I: pbuilder: network access will be disabled during build I: Current time: Fri Mar 17 12:44:59 -12 2023 I: pbuilder-time-stamp: 1679100299 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ball_1.5.0+git20180813.37fc53c-6.dsc] I: copying [./ball_1.5.0+git20180813.37fc53c.orig.tar.xz] I: copying [./ball_1.5.0+git20180813.37fc53c-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.dloOB9rC/trustedkeys.kbx': General error gpgv: Signature made Sun Mar 8 23:51:34 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ball_1.5.0+git20180813.37fc53c-6.dsc dpkg-source: info: extracting ball in ball-1.5.0+git20180813.37fc53c dpkg-source: info: unpacking ball_1.5.0+git20180813.37fc53c.orig.tar.xz dpkg-source: info: unpacking ball_1.5.0+git20180813.37fc53c-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python3.patch dpkg-source: info: applying fix-ftbfs-char.patch dpkg-source: info: applying missing_GLEW I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4212/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='412d6e35955941d6b775e417891cd480' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4212' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.64K08arS/pbuilderrc_QhL2 --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.64K08arS/b1 --logfile b1/build.log ball_1.5.0+git20180813.37fc53c-6.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux cbxi4a 5.10.0-21-armmp #1 SMP Debian 5.10.162-1 (2023-01-21) armv7l GNU/Linux I: ls -l /bin total 3580 -rwxr-xr-x 1 root root 816764 Mar 27 2022 bash -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash -rwxr-xr-x 1 root root 75880 Sep 22 2020 date -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd -rwxr-xr-x 1 root root 59912 Sep 22 2020 df -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir -rwxr-xr-x 1 root root 55012 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 22496 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 47492 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 26076 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 64212 Apr 9 2022 gzip -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln -rwxr-xr-x 1 root root 35068 Feb 7 2020 login -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls -rwxr-xr-x 1 root root 99940 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 34408 Jan 20 2022 more -rwsr-xr-x 1 root root 34400 Jan 20 2022 mount -rwxr-xr-x 1 root root 9824 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Mar 6 21:27 sh -> dash -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty -rwsr-xr-x 1 root root 46704 Jan 20 2022 su -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync -rwxr-xr-x 1 root root 340872 Feb 16 2021 tar -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch -rwxr-xr-x 1 root root 22496 Sep 22 2020 true -rwxr-xr-x 1 root root 9636 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 22108 Jan 20 2022 umount -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir -rwxr-xr-x 1 root root 38512 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/4212/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-python, qtbase5-dev, qttools5-dev, libqt5opengl5-dev, python3-sip-dev, flex, bison, cmake, qtwebengine5-dev, libfftw3-dev, libeigen3-dev, libgsl0-dev, python3-dev, libxrender-dev, libboost-dev, libboost-iostreams-dev, libboost-thread-dev, libboost-math-dev, libboost-system-dev, libasio-dev, libboost-regex-dev, libxmu-dev, libglew-dev, libx11-dev, tidy, chrpath, doxygen, graphviz, ghostscript, texlive-latex-base, texlive-latex-recommended, texlive-fonts-recommended, texlive-latex-extra dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19447 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on qtbase5-dev; however: Package qtbase5-dev is not installed. pbuilder-satisfydepends-dummy depends on qttools5-dev; however: Package qttools5-dev is not installed. pbuilder-satisfydepends-dummy depends on libqt5opengl5-dev; however: Package libqt5opengl5-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-sip-dev; however: Package python3-sip-dev is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on bison; however: Package bison is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on qtwebengine5-dev; however: Package qtwebengine5-dev is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl0-dev; however: Package libgsl0-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on libxrender-dev; however: Package libxrender-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however: Package libboost-thread-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-math-dev; however: Package libboost-math-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libasio-dev; however: Package libasio-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-regex-dev; however: Package libboost-regex-dev is not installed. pbuilder-satisfydepends-dummy depends on libxmu-dev; however: Package libxmu-dev is not installed. pbuilder-satisfydepends-dummy depends on libglew-dev; however: Package libglew-dev is not installed. pbuilder-satisfydepends-dummy depends on libx11-dev; however: Package libx11-dev is not installed. pbuilder-satisfydepends-dummy depends on tidy; however: Package tidy is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bison{a} bsdextrautils{a} chrpath{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} flex{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} graphviz{a} groff-base{a} icu-devtools{a} intltool-debian{a} iso-codes{a} libaom0{a} libapache-pom-java{a} libarchive-zip-perl{a} libarchive13{a} libasio-dev{a} libasound2{a} libasound2-data{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libavcodec58{a} libavformat58{a} libavutil56{a} libbluray2{a} libboost-atomic1.74-dev{a} libboost-atomic1.74.0{a} libboost-chrono1.74-dev{a} libboost-chrono1.74.0{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-dev{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-math-dev{a} libboost-math1.74-dev{a} libboost-math1.74.0{a} libboost-regex-dev{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-system-dev{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost-thread-dev{a} libboost-thread1.74-dev{a} libboost-thread1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libcairo-gobject2{a} libcairo2{a} libcap2{a} libcap2-bin{a} libcdt5{a} libcgraph6{a} libchromaprint1{a} libclang-cpp11{a} libclang1-11{a} libcodec2-0.9{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2{a} libcurl4{a} libdatrie1{a} libdav1d4{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libdw1{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libeigen3-dev{a} libelf1{a} libevdev2{a} libevent-2.1-7{a} libexpat1{a} libexpat1-dev{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgd3{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglew-dev{a} libglew2.1{a} libglib2.0-0{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgme0{a} libgraphite2-3{a} libgs9{a} libgs9-common{a} libgsl-dev{a} libgsl25{a} libgslcblas0{a} libgsm1{a} libgstreamer-plugins-base1.0-0{a} libgstreamer1.0-0{a} libgts-0.7-5{a} libgudev-1.0-0{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libhyphen0{a} libice-dev{a} libice6{a} libicu-dev{a} libicu67{a} libidn11{a} libijs-0.35{a} libinput-bin{a} libinput10{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp24{a} libkpathsea6{a} liblab-gamut1{a} liblcms2-2{a} libldap-2.4-2{a} libllvm11{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmd4c0{a} libminizip1{a} libmp3lame0{a} libmpdec3{a} libmpg123-0{a} libmtdev1{a} libncurses6{a} libnghttp2-14{a} libnorm1{a} libnspr4{a} libnss3{a} libogg0{a} libopenjp2-7{a} libopenmpt0{a} libopus0{a} liborc-0.4-0{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpathplan4{a} libpcre2-16-0{a} libpdfbox-java{a} libpgm-5.3-0{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libprocps8{a} libpsl5{a} libptexenc1{a} libpthread-stubs0-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libqt5concurrent5{a} libqt5core5a{a} libqt5dbus5{a} libqt5designer5{a} libqt5designercomponents5{a} libqt5gui5{a} libqt5help5{a} libqt5network5{a} libqt5opengl5{a} libqt5opengl5-dev{a} libqt5positioning5{a} libqt5positioning5-plugins{a} libqt5positioningquick5{a} libqt5printsupport5{a} libqt5qml5{a} libqt5qmlmodels5{a} libqt5qmlworkerscript5{a} libqt5quick5{a} libqt5quickparticles5{a} libqt5quickshapes5{a} libqt5quicktest5{a} libqt5quickwidgets5{a} libqt5sensors5{a} libqt5sql5{a} libqt5sql5-sqlite{a} libqt5test5{a} libqt5webchannel5{a} libqt5webchannel5-dev{a} libqt5webengine-data{a} libqt5webengine5{a} libqt5webenginecore5{a} libqt5webenginewidgets5{a} libqt5webkit5{a} libqt5widgets5{a} libqt5xml5{a} librabbitmq4{a} libre2-9{a} libreadline8{a} librhash0{a} librsvg2-2{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libshine3{a} libsigsegv2{a} libsm-dev{a} libsm6{a} libsnappy1v5{a} libsodium23{a} libsoxr0{a} libspeex1{a} libsrt1.4-gnutls{a} libssh-gcrypt-4{a} libssh2-1{a} libsub-override-perl{a} libswresample3{a} libsynctex2{a} libteckit0{a} libtexlua53{a} libtexluajit2{a} libthai-data{a} libthai0{a} libtheora0{a} libtidy5deb1{a} libtiff5{a} libtool{a} libtwolame0{a} libuchardet0{a} libudfread0{a} libunwind8{a} libuv1{a} libva-drm2{a} libva-x11-2{a} libva2{a} libvdpau1{a} libvorbis0a{a} libvorbisenc2{a} libvorbisfile3{a} libvpx6{a} libvulkan-dev{a} libvulkan1{a} libwacom-common{a} libwacom2{a} libwavpack1{a} libwayland-client0{a} libwayland-server0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libwoff1{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libx264-160{a} libx265-192{a} libxau-dev{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes3{a} libxi6{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxmu-dev{a} libxmu-headers{a} libxmu6{a} libxpm4{a} libxrandr2{a} libxrender-dev{a} libxrender1{a} libxshmfence1{a} libxslt1.1{a} libxss1{a} libxt-dev{a} libxt6{a} libxvidcore4{a} libxxf86vm1{a} libz3-4{a} libzmq5{a} libzvbi-common{a} libzvbi0{a} libzzip-0-13{a} m4{a} man-db{a} media-types{a} ocl-icd-libopencl1{a} pkg-config{a} po-debconf{a} poppler-data{a} preview-latex-style{a} procps{a} python3{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-sip{a} python3-sip-dev{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} qdoc-qt5{a} qhelpgenerator-qt5{a} qt5-assistant{a} qt5-qmake{a} qt5-qmake-bin{a} qt5-qmltooling-plugins{a} qtattributionsscanner-qt5{a} qtbase5-dev{a} qtbase5-dev-tools{a} qtchooser{a} qtdeclarative5-dev{a} qtdeclarative5-dev-tools{a} qtpositioning5-dev{a} qttools5-dev{a} qttools5-dev-tools{a} qtwebengine5-dev{a} readline-common{a} sensible-utils{a} shared-mime-info{a} sip-dev{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} tidy{a} ucf{a} x11-common{a} x11proto-dev{a} x11proto-xext-dev{a} xdg-utils{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf ca-certificates curl dbus dvisvgm fonts-droid-fallback fonts-liberation geoclue-2.0 gstreamer1.0-plugins-base javascript-common libaacs0 libarchive-cpio-perl libboost-date-time-dev libfile-mimeinfo-perl libfl-dev libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libgts-bin libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpam-cap libqt5svg5 librsvg2-common libsasl2-modules libssl-dev libvdpau-va-gl1 libwacom-bin libx11-protocol-perl lmodern lynx mesa-va-drivers mesa-vdpau-drivers mesa-vulkan-drivers psmisc publicsuffix qt5-gtk-platformtheme qttranslations5-l10n qtwebengine5-doc ruby tex-gyre texlive-plain-generic tipa tk va-driver-all vdpau-driver-all wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 423 newly installed, 0 to remove and 0 not upgraded. Need to get 331 MB of archives. After unpacking 1304 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-8+deb11u1 [139 kB] Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB] Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB] Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB] Get: 6 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB] Get: 7 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB] Get: 8 http://deb.debian.org/debian bullseye/main armhf flex armhf 2.6.4-8 [424 kB] Get: 9 http://deb.debian.org/debian bullseye/main armhf libglvnd0 armhf 1.3.2-1 [51.8 kB] Get: 10 http://deb.debian.org/debian bullseye/main armhf libdrm-common all 2.4.104-1 [14.9 kB] Get: 11 http://deb.debian.org/debian bullseye/main armhf libdrm2 armhf 2.4.104-1 [37.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2+deb11u5 [78.4 kB] Get: 13 http://deb.debian.org/debian bullseye/main armhf libwayland-server0 armhf 1.18.0-2~exp1.1 [28.1 kB] Get: 14 http://deb.debian.org/debian bullseye/main armhf libgbm1 armhf 20.3.5-1 [70.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main armhf libglapi-mesa armhf 20.3.5-1 [80.2 kB] Get: 16 http://deb.debian.org/debian bullseye/main armhf libwayland-client0 armhf 1.18.0-2~exp1.1 [22.1 kB] Get: 17 http://deb.debian.org/debian bullseye/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 18 http://deb.debian.org/debian bullseye/main armhf libmd0 armhf 1.0.3-3 [27.4 kB] Get: 19 http://deb.debian.org/debian bullseye/main armhf libbsd0 armhf 0.11.3-1 [103 kB] Get: 20 http://deb.debian.org/debian bullseye/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 21 http://deb.debian.org/debian bullseye/main armhf libxcb1 armhf 1.14-3 [136 kB] Get: 22 http://deb.debian.org/debian bullseye/main armhf libx11-data all 2:1.7.2-1 [311 kB] Get: 23 http://deb.debian.org/debian bullseye/main armhf libx11-6 armhf 2:1.7.2-1 [713 kB] Get: 24 http://deb.debian.org/debian bullseye/main armhf libx11-xcb1 armhf 2:1.7.2-1 [203 kB] Get: 25 http://deb.debian.org/debian bullseye/main armhf libxcb-dri2-0 armhf 1.14-3 [103 kB] Get: 26 http://deb.debian.org/debian bullseye/main armhf libxcb-dri3-0 armhf 1.14-3 [102 kB] Get: 27 http://deb.debian.org/debian bullseye/main armhf libxcb-present0 armhf 1.14-3 [101 kB] Get: 28 http://deb.debian.org/debian bullseye/main armhf libxcb-sync1 armhf 1.14-3 [104 kB] Get: 29 http://deb.debian.org/debian bullseye/main armhf libxcb-xfixes0 armhf 1.14-3 [105 kB] Get: 30 http://deb.debian.org/debian bullseye/main armhf libxshmfence1 armhf 1.3-1 [8592 B] Get: 31 http://deb.debian.org/debian bullseye/main armhf libegl-mesa0 armhf 20.3.5-1 [123 kB] Get: 32 http://deb.debian.org/debian bullseye/main armhf libegl1 armhf 1.3.2-1 [29.5 kB] Get: 33 http://deb.debian.org/debian bullseye/main armhf libgles2 armhf 1.3.2-1 [18.2 kB] Get: 34 http://deb.debian.org/debian bullseye/main armhf libglib2.0-0 armhf 2.66.8-1 [1206 kB] Get: 35 http://deb.debian.org/debian bullseye/main armhf libcap2 armhf 1:2.44-1 [21.2 kB] Get: 36 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB] Get: 37 http://deb.debian.org/debian bullseye/main armhf libdw1 armhf 0.183-1 [216 kB] Get: 38 http://deb.debian.org/debian bullseye/main armhf libunwind8 armhf 1.3.2-2 [48.0 kB] Get: 39 http://deb.debian.org/debian bullseye/main armhf libcap2-bin armhf 1:2.44-1 [31.7 kB] Get: 40 http://deb.debian.org/debian bullseye/main armhf libgstreamer1.0-0 armhf 1.18.4-2.1 [2152 kB] Get: 41 http://deb.debian.org/debian bullseye/main armhf liborc-0.4-0 armhf 1:0.4.32-1 [157 kB] Get: 42 http://deb.debian.org/debian bullseye/main armhf iso-codes all 4.6.0-1 [2824 kB] Get: 43 http://deb.debian.org/debian bullseye/main armhf libgstreamer-plugins-base1.0-0 armhf 1.18.4-2 [2076 kB] Get: 44 http://deb.debian.org/debian bullseye/main armhf libhyphen0 armhf 2.8.8-7 [29.9 kB] Get: 45 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB] Get: 46 http://deb.debian.org/debian bullseye/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [123 kB] Get: 47 http://deb.debian.org/debian bullseye/main armhf libpng16-16 armhf 1.6.37-3 [277 kB] Get: 48 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7+deb11u3 [602 kB] Get: 49 http://deb.debian.org/debian bullseye/main armhf shared-mime-info armhf 2.0-1 [699 kB] Get: 50 http://deb.debian.org/debian bullseye/main armhf libdouble-conversion3 armhf 3.1.5-6.1 [39.0 kB] Get: 51 http://deb.debian.org/debian bullseye/main armhf libpcre2-16-0 armhf 10.36-2+deb11u1 [198 kB] Get: 52 http://deb.debian.org/debian bullseye/main armhf libqt5core5a armhf 5.15.2+dfsg-9 [1559 kB] Get: 53 http://deb.debian.org/debian bullseye/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB] Get: 54 http://deb.debian.org/debian bullseye/main armhf libfreetype6 armhf 2.10.4+dfsg-1+deb11u1 [357 kB] Get: 55 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB] Get: 56 http://deb.debian.org/debian bullseye/main armhf ucf all 3.0043 [74.0 kB] Get: 57 http://deb.debian.org/debian bullseye/main armhf fonts-dejavu-core all 2.37-2 [1069 kB] Get: 58 http://deb.debian.org/debian bullseye/main armhf fonts-urw-base35 all 20200910-1 [6367 kB] Get: 59 http://deb.debian.org/debian bullseye/main armhf fontconfig-config all 2.13.1-4.2 [281 kB] Get: 60 http://deb.debian.org/debian bullseye/main armhf libfontconfig1 armhf 2.13.1-4.2 [329 kB] Get: 61 http://deb.debian.org/debian bullseye/main armhf fontconfig armhf 2.13.1-4.2 [415 kB] Get: 62 http://deb.debian.org/debian bullseye/main armhf libgraphite2-3 armhf 1.3.14-1 [70.5 kB] Get: 63 http://deb.debian.org/debian bullseye/main armhf libharfbuzz0b armhf 2.7.4-1 [1427 kB] Get: 64 http://deb.debian.org/debian bullseye/main armhf x11-common all 1:7.7+22 [252 kB] Get: 65 http://deb.debian.org/debian bullseye/main armhf libice6 armhf 2:1.0.10-1 [51.9 kB] Get: 66 http://deb.debian.org/debian bullseye/main armhf libevdev2 armhf 1.11.0+dfsg-1 [28.1 kB] Get: 67 http://deb.debian.org/debian bullseye/main armhf libmtdev1 armhf 1.1.6-1 [21.9 kB] Get: 68 http://deb.debian.org/debian bullseye/main armhf libgudev-1.0-0 armhf 234-1 [12.7 kB] Get: 69 http://deb.debian.org/debian bullseye/main armhf libwacom-common all 1.8-2 [49.7 kB] Get: 70 http://deb.debian.org/debian bullseye/main armhf libwacom2 armhf 1.8-2 [19.1 kB] Get: 71 http://deb.debian.org/debian bullseye/main armhf libinput-bin armhf 1.16.4-3 [21.6 kB] Get: 72 http://deb.debian.org/debian bullseye/main armhf libinput10 armhf 1.16.4-3 [101 kB] Get: 73 http://deb.debian.org/debian bullseye/main armhf libmd4c0 armhf 0.4.7-2 [39.5 kB] Get: 74 http://deb.debian.org/debian bullseye/main armhf libdbus-1-3 armhf 1.12.24-0+deb11u1 [199 kB] Get: 75 http://deb.debian.org/debian bullseye/main armhf libqt5dbus5 armhf 5.15.2+dfsg-9 [217 kB] Get: 76 http://deb.debian.org/debian bullseye/main armhf libqt5network5 armhf 5.15.2+dfsg-9 [617 kB] Get: 77 http://deb.debian.org/debian bullseye/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get: 78 http://deb.debian.org/debian bullseye/main armhf libxcb-icccm4 armhf 0.4.1-1.1 [26.3 kB] Get: 79 http://deb.debian.org/debian bullseye/main armhf libxcb-shm0 armhf 1.14-3 [101 kB] Get: 80 http://deb.debian.org/debian bullseye/main armhf libxcb-util1 armhf 0.4.0-1+b1 [22.2 kB] Get: 81 http://deb.debian.org/debian bullseye/main armhf libxcb-image0 armhf 0.4.0-1+b3 [23.2 kB] Get: 82 http://deb.debian.org/debian bullseye/main armhf libxcb-keysyms1 armhf 0.4.0-1+b2 [15.8 kB] Get: 83 http://deb.debian.org/debian bullseye/main armhf libxcb-randr0 armhf 1.14-3 [112 kB] Get: 84 http://deb.debian.org/debian bullseye/main armhf libxcb-render0 armhf 1.14-3 [110 kB] Get: 85 http://deb.debian.org/debian bullseye/main armhf libxcb-render-util0 armhf 0.3.9-1+b1 [17.4 kB] Get: 86 http://deb.debian.org/debian bullseye/main armhf libxcb-shape0 armhf 1.14-3 [102 kB] Get: 87 http://deb.debian.org/debian bullseye/main armhf libxcb-xinerama0 armhf 1.14-3 [101 kB] Get: 88 http://deb.debian.org/debian bullseye/main armhf libxcb-xinput0 armhf 1.14-3 [124 kB] Get: 89 http://deb.debian.org/debian bullseye/main armhf libxcb-xkb1 armhf 1.14-3 [122 kB] Get: 90 http://deb.debian.org/debian bullseye/main armhf xkb-data all 2.29-2 [655 kB] Get: 91 http://deb.debian.org/debian bullseye/main armhf libxkbcommon0 armhf 1.0.3-2 [89.8 kB] Get: 92 http://deb.debian.org/debian bullseye/main armhf libxkbcommon-x11-0 armhf 1.0.3-2 [15.1 kB] Get: 93 http://deb.debian.org/debian bullseye/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB] Get: 94 http://deb.debian.org/debian bullseye/main armhf libqt5gui5 armhf 5.15.2+dfsg-9 [2628 kB] Get: 95 http://deb.debian.org/debian bullseye/main armhf libqt5positioning5 armhf 5.15.2+dfsg-2 [180 kB] Get: 96 http://deb.debian.org/debian bullseye/main armhf libavahi-common-data armhf 0.8-5+deb11u1 [124 kB] Get: 97 http://deb.debian.org/debian bullseye/main armhf libavahi-common3 armhf 0.8-5+deb11u1 [55.4 kB] Get: 98 http://deb.debian.org/debian bullseye/main armhf libavahi-client3 armhf 0.8-5+deb11u1 [58.8 kB] Get: 99 http://deb.debian.org/debian bullseye/main armhf libcups2 armhf 2.3.3op2-3+deb11u2 [317 kB] Get: 100 http://deb.debian.org/debian bullseye/main armhf libqt5widgets5 armhf 5.15.2+dfsg-9 [2119 kB] Get: 101 http://deb.debian.org/debian bullseye/main armhf libqt5printsupport5 armhf 5.15.2+dfsg-9 [214 kB] Get: 102 http://deb.debian.org/debian bullseye/main armhf libqt5qml5 armhf 5.15.2+dfsg-6 [1194 kB] Get: 103 http://deb.debian.org/debian bullseye/main armhf libqt5qmlmodels5 armhf 5.15.2+dfsg-6 [172 kB] Get: 104 http://deb.debian.org/debian bullseye/main armhf libqt5quick5 armhf 5.15.2+dfsg-6 [1373 kB] Get: 105 http://deb.debian.org/debian bullseye/main armhf libqt5sensors5 armhf 5.15.2-2 [97.9 kB] Get: 106 http://deb.debian.org/debian bullseye/main armhf libqt5webchannel5 armhf 5.15.2-2 [51.3 kB] Get: 107 http://deb.debian.org/debian bullseye/main armhf libwebp6 armhf 0.6.1-2.1 [226 kB] Get: 108 http://deb.debian.org/debian bullseye/main armhf libwoff1 armhf 1.0.2-1+b1 [35.5 kB] Get: 109 http://deb.debian.org/debian bullseye/main armhf libxslt1.1 armhf 1.1.34-4+deb11u1 [221 kB] Get: 110 http://deb.debian.org/debian bullseye/main armhf libqt5webkit5 armhf 5.212.0~alpha4-11 [9260 kB] Get: 111 http://deb.debian.org/debian bullseye/main armhf poppler-data all 0.4.10-1 [1602 kB] Get: 112 http://deb.debian.org/debian bullseye/main armhf libpython3.9-minimal armhf 3.9.2-1 [790 kB] Get: 113 http://deb.debian.org/debian bullseye/main armhf python3.9-minimal armhf 3.9.2-1 [1630 kB] Get: 114 http://deb.debian.org/debian bullseye/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB] Get: 115 http://deb.debian.org/debian bullseye/main armhf media-types all 4.0.0 [30.3 kB] Get: 116 http://deb.debian.org/debian bullseye/main armhf libmpdec3 armhf 2.5.1-1 [74.9 kB] Get: 117 http://deb.debian.org/debian bullseye/main armhf readline-common all 8.1-1 [73.7 kB] Get: 118 http://deb.debian.org/debian bullseye/main armhf libreadline8 armhf 8.1-1 [147 kB] Get: 119 http://deb.debian.org/debian bullseye/main armhf libpython3.9-stdlib armhf 3.9.2-1 [1608 kB] Get: 120 http://deb.debian.org/debian bullseye/main armhf python3.9 armhf 3.9.2-1 [466 kB] Get: 121 http://deb.debian.org/debian bullseye/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB] Get: 122 http://deb.debian.org/debian bullseye/main armhf python3 armhf 3.9.2-3 [37.9 kB] Get: 123 http://deb.debian.org/debian bullseye/main armhf tex-common all 6.16 [53.7 kB] Get: 124 http://deb.debian.org/debian bullseye/main armhf libncurses6 armhf 6.2+20201114-2 [80.5 kB] Get: 125 http://deb.debian.org/debian bullseye/main armhf libprocps8 armhf 2:3.3.17-5 [60.7 kB] Get: 126 http://deb.debian.org/debian bullseye/main armhf procps armhf 2:3.3.17-5 [492 kB] Get: 127 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB] Get: 128 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB] Get: 129 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB] Get: 130 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB] Get: 131 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB] Get: 132 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 133 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB] Get: 134 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB] Get: 135 http://deb.debian.org/debian bullseye/main armhf bison armhf 2:3.7.5+dfsg-1 [1072 kB] Get: 136 http://deb.debian.org/debian bullseye/main armhf chrpath armhf 0.16-2+b1 [15.9 kB] Get: 137 http://deb.debian.org/debian bullseye/main armhf cmake-data all 3.18.4-2+deb11u1 [1725 kB] Get: 138 http://deb.debian.org/debian bullseye/main armhf libarchive13 armhf 3.4.3-2+deb11u1 [303 kB] Get: 139 http://deb.debian.org/debian bullseye/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2.1+deb11u1 [67.7 kB] Get: 140 http://deb.debian.org/debian bullseye/main armhf libsasl2-2 armhf 2.1.27+dfsg-2.1+deb11u1 [99.2 kB] Get: 141 http://deb.debian.org/debian bullseye/main armhf libldap-2.4-2 armhf 2.4.57+dfsg-3+deb11u1 [210 kB] Get: 142 http://deb.debian.org/debian bullseye/main armhf libnghttp2-14 armhf 1.43.0-1 [65.6 kB] Get: 143 http://deb.debian.org/debian bullseye/main armhf libpsl5 armhf 0.21.0-1.2 [56.1 kB] Get: 144 http://deb.debian.org/debian bullseye/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 145 http://deb.debian.org/debian bullseye/main armhf libssh2-1 armhf 1.9.0-2 [143 kB] Get: 146 http://deb.debian.org/debian bullseye/main armhf libcurl4 armhf 7.74.0-1.3+deb11u3 [312 kB] Get: 147 http://deb.debian.org/debian bullseye/main armhf libjsoncpp24 armhf 1.9.4-4 [68.5 kB] Get: 148 http://deb.debian.org/debian bullseye/main armhf librhash0 armhf 1.4.1-2 [144 kB] Get: 149 http://deb.debian.org/debian bullseye/main armhf libuv1 armhf 1.40.0-2 [120 kB] Get: 150 http://deb.debian.org/debian bullseye/main armhf cmake armhf 3.18.4-2+deb11u1 [3534 kB] Get: 151 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB] Get: 152 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB] Get: 153 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB] Get: 154 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 155 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB] Get: 156 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 157 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 158 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB] Get: 159 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB] Get: 160 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 161 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 162 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB] Get: 163 http://deb.debian.org/debian bullseye/main armhf python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 164 http://deb.debian.org/debian bullseye/main armhf python3-distutils all 3.9.2-1 [143 kB] Get: 165 http://deb.debian.org/debian bullseye/main armhf dh-python all 4.20201102+nmu1 [99.4 kB] Get: 166 http://deb.debian.org/debian bullseye/main armhf libedit2 armhf 3.1-20191231-2+b1 [81.1 kB] Get: 167 http://deb.debian.org/debian bullseye/main armhf libz3-4 armhf 4.8.10-1 [5959 kB] Get: 168 http://deb.debian.org/debian bullseye/main armhf libllvm11 armhf 1:11.0.1-2 [15.4 MB] Get: 169 http://deb.debian.org/debian bullseye/main armhf libclang-cpp11 armhf 1:11.0.1-2 [8197 kB] Get: 170 http://deb.debian.org/debian bullseye/main armhf libclang1-11 armhf 1:11.0.1-2 [4579 kB] Get: 171 http://deb.debian.org/debian bullseye/main armhf doxygen armhf 1.9.1-1 [3765 kB] Get: 172 http://deb.debian.org/debian bullseye/main armhf fonts-lmodern all 2.004.5-6.1 [4540 kB] Get: 173 http://deb.debian.org/debian bullseye/main armhf libgs9-common all 9.53.3~dfsg-7+deb11u2 [734 kB] Get: 174 http://deb.debian.org/debian bullseye/main armhf libidn11 armhf 1.33-3 [113 kB] Get: 175 http://deb.debian.org/debian bullseye/main armhf libijs-0.35 armhf 0.35-15 [14.8 kB] Get: 176 http://deb.debian.org/debian bullseye/main armhf libjbig2dec0 armhf 0.19-2 [59.0 kB] Get: 177 http://deb.debian.org/debian bullseye/main armhf liblcms2-2 armhf 2.12~rc1-2 [123 kB] Get: 178 http://deb.debian.org/debian bullseye/main armhf libopenjp2-7 armhf 2.4.0-3 [154 kB] Get: 179 http://deb.debian.org/debian bullseye/main armhf libpaper1 armhf 1.1.28+b1 [20.8 kB] Get: 180 http://deb.debian.org/debian bullseye/main armhf libdeflate0 armhf 1.7-1 [43.1 kB] Get: 181 http://deb.debian.org/debian bullseye/main armhf libjbig0 armhf 2.1-3.1+b2 [28.4 kB] Get: 182 http://deb.debian.org/debian bullseye/main armhf libtiff5 armhf 4.2.0-1+deb11u1 [272 kB] Get: 183 http://deb.debian.org/debian bullseye/main armhf libgs9 armhf 9.53.3~dfsg-7+deb11u2 [1932 kB] Get: 184 http://deb.debian.org/debian bullseye/main armhf ghostscript armhf 9.53.3~dfsg-7+deb11u2 [97.7 kB] Get: 185 http://deb.debian.org/debian bullseye/main armhf libcdt5 armhf 2.42.2-5 [59.7 kB] Get: 186 http://deb.debian.org/debian bullseye/main armhf libcgraph6 armhf 2.42.2-5 [78.4 kB] Get: 187 http://deb.debian.org/debian bullseye/main armhf libxpm4 armhf 1:3.5.12-1 [44.0 kB] Get: 188 http://deb.debian.org/debian bullseye/main armhf libgd3 armhf 2.3.0-2 [119 kB] Get: 189 http://deb.debian.org/debian bullseye/main armhf libgts-0.7-5 armhf 0.7.6+darcs121130-4+b1 [138 kB] Get: 190 http://deb.debian.org/debian bullseye/main armhf libpixman-1-0 armhf 0.40.0-1.1~deb11u1 [466 kB] Get: 191 http://deb.debian.org/debian bullseye/main armhf libxext6 armhf 2:1.3.3-1.1 [47.8 kB] Get: 192 http://deb.debian.org/debian bullseye/main armhf libcairo2 armhf 1.16.0-5 [615 kB] Get: 193 http://deb.debian.org/debian bullseye/main armhf libltdl7 armhf 2.4.6-15 [388 kB] Get: 194 http://deb.debian.org/debian bullseye/main armhf libfribidi0 armhf 1.0.8-2+deb11u1 [63.1 kB] Get: 195 http://deb.debian.org/debian bullseye/main armhf libthai-data all 0.1.28-3 [170 kB] Get: 196 http://deb.debian.org/debian bullseye/main armhf libdatrie1 armhf 0.2.13-1 [39.4 kB] Get: 197 http://deb.debian.org/debian bullseye/main armhf libthai0 armhf 0.1.28-3 [50.9 kB] Get: 198 http://deb.debian.org/debian bullseye/main armhf libpango-1.0-0 armhf 1.46.2-3 [173 kB] Get: 199 http://deb.debian.org/debian bullseye/main armhf libpangoft2-1.0-0 armhf 1.46.2-3 [56.1 kB] Get: 200 http://deb.debian.org/debian bullseye/main armhf libpangocairo-1.0-0 armhf 1.46.2-3 [46.8 kB] Get: 201 http://deb.debian.org/debian bullseye/main armhf libpathplan4 armhf 2.42.2-5 [61.9 kB] Get: 202 http://deb.debian.org/debian bullseye/main armhf libgvc6 armhf 2.42.2-5 [597 kB] Get: 203 http://deb.debian.org/debian bullseye/main armhf libgvpr2 armhf 2.42.2-5 [185 kB] Get: 204 http://deb.debian.org/debian bullseye/main armhf liblab-gamut1 armhf 2.42.2-5 [220 kB] Get: 205 http://deb.debian.org/debian bullseye/main armhf libxt6 armhf 1:1.2.0-1 [161 kB] Get: 206 http://deb.debian.org/debian bullseye/main armhf libxmu6 armhf 2:1.1.2-2+b3 [52.7 kB] Get: 207 http://deb.debian.org/debian bullseye/main armhf libxaw7 armhf 2:1.0.13-1.1 [167 kB] Get: 208 http://deb.debian.org/debian bullseye/main armhf graphviz armhf 2.42.2-5 [521 kB] Get: 209 http://deb.debian.org/debian bullseye/main armhf icu-devtools armhf 67.1-7 [180 kB] Get: 210 http://deb.debian.org/debian bullseye/main armhf libaom0 armhf 1.0.0.errata1-3 [821 kB] Get: 211 http://deb.debian.org/debian bullseye/main armhf libapache-pom-java all 18-1 [4676 B] Get: 212 http://deb.debian.org/debian bullseye/main armhf libasio-dev all 1:1.18.1-1 [354 kB] Get: 213 http://deb.debian.org/debian bullseye/main armhf libasound2-data all 1.2.4-1.1 [38.2 kB] Get: 214 http://deb.debian.org/debian bullseye/main armhf libasound2 armhf 1.2.4-1.1 [310 kB] Get: 215 http://deb.debian.org/debian bullseye/main armhf libva2 armhf 2.10.0-1 [62.6 kB] Get: 216 http://deb.debian.org/debian bullseye/main armhf libva-drm2 armhf 2.10.0-1 [18.4 kB] Get: 217 http://deb.debian.org/debian bullseye/main armhf libxfixes3 armhf 1:5.0.3-2 [20.6 kB] Get: 218 http://deb.debian.org/debian bullseye/main armhf libva-x11-2 armhf 2.10.0-1 [21.8 kB] Get: 219 http://deb.debian.org/debian bullseye/main armhf libvdpau1 armhf 1.4-3 [27.4 kB] Get: 220 http://deb.debian.org/debian bullseye/main armhf ocl-icd-libopencl1 armhf 2.2.14-2 [39.7 kB] Get: 221 http://deb.debian.org/debian bullseye/main armhf libavutil56 armhf 7:4.3.5-0+deb11u1 [308 kB] Get: 222 http://deb.debian.org/debian bullseye/main armhf libcodec2-0.9 armhf 0.9.2-4 [7867 kB] Get: 223 http://deb.debian.org/debian bullseye/main armhf libdav1d4 armhf 0.7.1-3 [228 kB] Get: 224 http://deb.debian.org/debian bullseye/main armhf libgsm1 armhf 1.0.18-2 [26.5 kB] Get: 225 http://deb.debian.org/debian bullseye/main armhf libmp3lame0 armhf 3.100-3 [350 kB] Get: 226 http://deb.debian.org/debian bullseye/main armhf libopus0 armhf 1.3.1-0.1 [166 kB] Get: 227 http://deb.debian.org/debian bullseye/main armhf libcairo-gobject2 armhf 1.16.0-5 [125 kB] Get: 228 http://deb.debian.org/debian bullseye/main armhf libgdk-pixbuf2.0-common all 2.42.2+dfsg-1+deb11u1 [320 kB] Get: 229 http://deb.debian.org/debian bullseye/main armhf libgdk-pixbuf-2.0-0 armhf 2.42.2+dfsg-1+deb11u1 [131 kB] Get: 230 http://deb.debian.org/debian bullseye/main armhf librsvg2-2 armhf 2.50.3+dfsg-1 [2042 kB] Get: 231 http://deb.debian.org/debian bullseye/main armhf libshine3 armhf 3.1.1-2 [22.0 kB] Get: 232 http://deb.debian.org/debian bullseye/main armhf libsnappy1v5 armhf 1.1.8-1 [16.5 kB] Get: 233 http://deb.debian.org/debian bullseye/main armhf libspeex1 armhf 1.2~rc1.2-1.1 [51.6 kB] Get: 234 http://deb.debian.org/debian bullseye/main armhf libsoxr0 armhf 0.1.3-4 [67.0 kB] Get: 235 http://deb.debian.org/debian bullseye/main armhf libswresample3 armhf 7:4.3.5-0+deb11u1 [103 kB] Get: 236 http://deb.debian.org/debian bullseye/main armhf libogg0 armhf 1.3.4-0.1 [24.6 kB] Get: 237 http://deb.debian.org/debian bullseye/main armhf libtheora0 armhf 1.1.1+dfsg.1-15 [147 kB] Get: 238 http://deb.debian.org/debian bullseye/main armhf libtwolame0 armhf 0.4.0-2 [47.1 kB] Get: 239 http://deb.debian.org/debian bullseye/main armhf libvorbis0a armhf 1.3.7-1 [83.0 kB] Get: 240 http://deb.debian.org/debian bullseye/main armhf libvorbisenc2 armhf 1.3.7-1 [74.4 kB] Get: 241 http://deb.debian.org/debian bullseye/main armhf libvpx6 armhf 1.9.0-1 [1038 kB] Get: 242 http://deb.debian.org/debian bullseye/main armhf libwavpack1 armhf 5.4.0-1 [75.7 kB] Get: 243 http://deb.debian.org/debian bullseye/main armhf libwebpmux3 armhf 0.6.1-2.1 [94.2 kB] Get: 244 http://deb.debian.org/debian bullseye/main armhf libx264-160 armhf 2:0.160.3011+gitcde9a93-2.1 [426 kB] Get: 245 http://deb.debian.org/debian bullseye/main armhf libx265-192 armhf 3.4-2 [583 kB] Get: 246 http://deb.debian.org/debian bullseye/main armhf libxvidcore4 armhf 2:1.3.7-1 [203 kB] Get: 247 http://deb.debian.org/debian bullseye/main armhf libzvbi-common all 0.2.35-18 [64.6 kB] Get: 248 http://deb.debian.org/debian bullseye/main armhf libzvbi0 armhf 0.2.35-18 [245 kB] Get: 249 http://deb.debian.org/debian bullseye/main armhf libavcodec58 armhf 7:4.3.5-0+deb11u1 [4505 kB] Get: 250 http://deb.debian.org/debian bullseye/main armhf libudfread0 armhf 1.1.1-1 [14.3 kB] Get: 251 http://deb.debian.org/debian bullseye/main armhf libbluray2 armhf 1:1.2.1-4+deb11u2 [124 kB] Get: 252 http://deb.debian.org/debian bullseye/main armhf libchromaprint1 armhf 1.5.0-2 [33.4 kB] Get: 253 http://deb.debian.org/debian bullseye/main armhf libgme0 armhf 0.6.3-2 [108 kB] Get: 254 http://deb.debian.org/debian bullseye/main armhf libmpg123-0 armhf 1.26.4-1 [120 kB] Get: 255 http://deb.debian.org/debian bullseye/main armhf libvorbisfile3 armhf 1.3.7-1 [25.4 kB] Get: 256 http://deb.debian.org/debian bullseye/main armhf libopenmpt0 armhf 0.4.11-1 [544 kB] Get: 257 http://deb.debian.org/debian bullseye/main armhf librabbitmq4 armhf 0.10.0-1 [36.8 kB] Get: 258 http://deb.debian.org/debian bullseye/main armhf libsrt1.4-gnutls armhf 1.4.2-1.3 [240 kB] Get: 259 http://deb.debian.org/debian bullseye/main armhf libssh-gcrypt-4 armhf 0.9.5-1+deb11u1 [193 kB] Get: 260 http://deb.debian.org/debian bullseye/main armhf libnorm1 armhf 1.5.9+dfsg-2 [185 kB] Get: 261 http://deb.debian.org/debian bullseye/main armhf libpgm-5.3-0 armhf 5.3.128~dfsg-2 [156 kB] Get: 262 http://deb.debian.org/debian bullseye/main armhf libsodium23 armhf 1.0.18-1 [147 kB] Get: 263 http://deb.debian.org/debian bullseye/main armhf libzmq5 armhf 4.3.4-1 [237 kB] Get: 264 http://deb.debian.org/debian bullseye/main armhf libavformat58 armhf 7:4.3.5-0+deb11u1 [984 kB] Get: 265 http://deb.debian.org/debian bullseye/main armhf libboost1.74-dev armhf 1.74.0-9 [9534 kB] Get: 266 http://deb.debian.org/debian bullseye/main armhf libboost-atomic1.74.0 armhf 1.74.0-9 [244 kB] Get: 267 http://deb.debian.org/debian bullseye/main armhf libboost-atomic1.74-dev armhf 1.74.0-9 [245 kB] Get: 268 http://deb.debian.org/debian bullseye/main armhf libboost-chrono1.74.0 armhf 1.74.0-9 [248 kB] Get: 269 http://deb.debian.org/debian bullseye/main armhf libboost-chrono1.74-dev armhf 1.74.0-9 [255 kB] Get: 270 http://deb.debian.org/debian bullseye/main armhf libboost-date-time1.74.0 armhf 1.74.0-9 [241 kB] Get: 271 http://deb.debian.org/debian bullseye/main armhf libboost-serialization1.74.0 armhf 1.74.0-9 [321 kB] Get: 272 http://deb.debian.org/debian bullseye/main armhf libboost-serialization1.74-dev armhf 1.74.0-9 [394 kB] Get: 273 http://deb.debian.org/debian bullseye/main armhf libboost-date-time1.74-dev armhf 1.74.0-9 [250 kB] Get: 274 http://deb.debian.org/debian bullseye/main armhf libboost-dev armhf 1.74.0.3 [4548 B] Get: 275 http://deb.debian.org/debian bullseye/main armhf libboost-regex1.74.0 armhf 1.74.0-9 [459 kB] Get: 276 http://deb.debian.org/debian bullseye/main armhf libicu-dev armhf 67.1-7 [9343 kB] Get: 277 http://deb.debian.org/debian bullseye/main armhf libboost-regex1.74-dev armhf 1.74.0-9 [572 kB] Get: 278 http://deb.debian.org/debian bullseye/main armhf libboost-iostreams1.74-dev armhf 1.74.0-9 [271 kB] Get: 279 http://deb.debian.org/debian bullseye/main armhf libboost-iostreams-dev armhf 1.74.0.3 [4316 B] Get: 280 http://deb.debian.org/debian bullseye/main armhf libboost-math1.74.0 armhf 1.74.0-9 [350 kB] Get: 281 http://deb.debian.org/debian bullseye/main armhf libboost-math1.74-dev armhf 1.74.0-9 [410 kB] Get: 282 http://deb.debian.org/debian bullseye/main armhf libboost-math-dev armhf 1.74.0.3 [4532 B] Get: 283 http://deb.debian.org/debian bullseye/main armhf libboost-regex-dev armhf 1.74.0.3 [4596 B] Get: 284 http://deb.debian.org/debian bullseye/main armhf libboost-system1.74.0 armhf 1.74.0-9 [242 kB] Get: 285 http://deb.debian.org/debian bullseye/main armhf libboost-system1.74-dev armhf 1.74.0-9 [243 kB] Get: 286 http://deb.debian.org/debian bullseye/main armhf libboost-system-dev armhf 1.74.0.3 [4468 B] Get: 287 http://deb.debian.org/debian bullseye/main armhf libboost-thread1.74.0 armhf 1.74.0-9 [271 kB] Get: 288 http://deb.debian.org/debian bullseye/main armhf libboost-thread1.74-dev armhf 1.74.0-9 [286 kB] Get: 289 http://deb.debian.org/debian bullseye/main armhf libboost-thread-dev armhf 1.74.0.3 [4356 B] Get: 290 http://deb.debian.org/debian bullseye/main armhf libcommons-parent-java all 43-1 [10.8 kB] Get: 291 http://deb.debian.org/debian bullseye/main armhf libcommons-logging-java all 1.2-2 [62.2 kB] Get: 292 http://deb.debian.org/debian bullseye/main armhf libdrm-amdgpu1 armhf 2.4.104-1 [27.1 kB] Get: 293 http://deb.debian.org/debian bullseye/main armhf libdrm-nouveau2 armhf 2.4.104-1 [24.6 kB] Get: 294 http://deb.debian.org/debian bullseye/main armhf libdrm-radeon1 armhf 2.4.104-1 [27.6 kB] Get: 295 http://deb.debian.org/debian bullseye/main armhf libxcb-glx0 armhf 1.14-3 [116 kB] Get: 296 http://deb.debian.org/debian bullseye/main armhf libxdamage1 armhf 1:1.1.5-2 [15.1 kB] Get: 297 http://deb.debian.org/debian bullseye/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.2 kB] Get: 298 http://deb.debian.org/debian bullseye/main armhf libsensors-config all 1:3.6.0-7 [32.3 kB] Get: 299 http://deb.debian.org/debian bullseye/main armhf libsensors5 armhf 1:3.6.0-7 [49.6 kB] Get: 300 http://deb.debian.org/debian bullseye/main armhf libvulkan1 armhf 1.2.162.0-1 [84.3 kB] Get: 301 http://deb.debian.org/debian bullseye/main armhf libgl1-mesa-dri armhf 20.3.5-1 [6037 kB] Get: 302 http://deb.debian.org/debian bullseye/main armhf libglx-mesa0 armhf 20.3.5-1 [167 kB] Get: 303 http://deb.debian.org/debian bullseye/main armhf libglx0 armhf 1.3.2-1 [32.8 kB] Get: 304 http://deb.debian.org/debian bullseye/main armhf libgl1 armhf 1.3.2-1 [94.3 kB] Get: 305 http://deb.debian.org/debian bullseye/main armhf xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 306 http://deb.debian.org/debian bullseye/main armhf x11proto-dev all 2020.1-1 [594 kB] Get: 307 http://deb.debian.org/debian bullseye/main armhf libxau-dev armhf 1:1.0.9-1 [22.4 kB] Get: 308 http://deb.debian.org/debian bullseye/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.7 kB] Get: 309 http://deb.debian.org/debian bullseye/main armhf xtrans-dev all 1.4.0-1 [98.7 kB] Get: 310 http://deb.debian.org/debian bullseye/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B] Get: 311 http://deb.debian.org/debian bullseye/main armhf libxcb1-dev armhf 1.14-3 [175 kB] Get: 312 http://deb.debian.org/debian bullseye/main armhf libx11-dev armhf 2:1.7.2-1 [785 kB] Get: 313 http://deb.debian.org/debian bullseye/main armhf libglx-dev armhf 1.3.2-1 [16.3 kB] Get: 314 http://deb.debian.org/debian bullseye/main armhf libgl-dev armhf 1.3.2-1 [100 kB] Get: 315 http://deb.debian.org/debian bullseye/main armhf libegl-dev armhf 1.3.2-1 [19.6 kB] Get: 316 http://deb.debian.org/debian bullseye/main armhf pkg-config armhf 0.29.2-1 [62.4 kB] Get: 317 http://deb.debian.org/debian bullseye/main armhf libeigen3-dev all 3.3.9-2 [858 kB] Get: 318 http://deb.debian.org/debian bullseye/main armhf libevent-2.1-7 armhf 2.1.12-stable-1 [169 kB] Get: 319 http://deb.debian.org/debian bullseye/main armhf libexpat1-dev armhf 2.2.10-2+deb11u5 [126 kB] Get: 320 http://deb.debian.org/debian bullseye/main armhf libfftw3-double3 armhf 3.3.8-2 [432 kB] Get: 321 http://deb.debian.org/debian bullseye/main armhf libfftw3-single3 armhf 3.3.8-2 [715 kB] Get: 322 http://deb.debian.org/debian bullseye/main armhf libfftw3-bin armhf 3.3.8-2 [43.5 kB] Get: 323 http://deb.debian.org/debian bullseye/main armhf libfftw3-dev armhf 3.3.8-2 [1141 kB] Get: 324 http://deb.debian.org/debian bullseye/main armhf libfontbox-java all 1:1.8.16-2 [211 kB] Get: 325 http://deb.debian.org/debian bullseye/main armhf libgles1 armhf 1.3.2-1 [12.6 kB] Get: 326 http://deb.debian.org/debian bullseye/main armhf libgles-dev armhf 1.3.2-1 [50.3 kB] Get: 327 http://deb.debian.org/debian bullseye/main armhf libglew2.1 armhf 2.1.0-4+b1 [162 kB] Get: 328 http://deb.debian.org/debian bullseye/main armhf libglu1-mesa armhf 9.0.1-1 [130 kB] Get: 329 http://deb.debian.org/debian bullseye/main armhf libglu1-mesa-dev armhf 9.0.1-1 [171 kB] Get: 330 http://deb.debian.org/debian bullseye/main armhf libglew-dev armhf 2.1.0-4+b1 [141 kB] Get: 331 http://deb.debian.org/debian bullseye/main armhf libgslcblas0 armhf 2.6+dfsg-2 [80.0 kB] Get: 332 http://deb.debian.org/debian bullseye/main armhf libgsl25 armhf 2.6+dfsg-2 [769 kB] Get: 333 http://deb.debian.org/debian bullseye/main armhf libgsl-dev armhf 2.6+dfsg-2 [963 kB] Get: 334 http://deb.debian.org/debian bullseye/main armhf libice-dev armhf 2:1.0.10-1 [61.9 kB] Get: 335 http://deb.debian.org/debian bullseye/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 336 http://deb.debian.org/debian bullseye/main armhf libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 337 http://deb.debian.org/debian bullseye/main armhf libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 338 http://deb.debian.org/debian bullseye/main armhf libkpathsea6 armhf 2020.20200327.54578-7 [163 kB] Get: 339 http://deb.debian.org/debian bullseye/main armhf libminizip1 armhf 1.1-8+b1 [19.0 kB] Get: 340 http://deb.debian.org/debian bullseye/main armhf libnspr4 armhf 2:4.29-1 [90.7 kB] Get: 341 http://deb.debian.org/debian bullseye/main armhf libnss3 armhf 2:3.61-1+deb11u2 [1114 kB] Get: 342 http://deb.debian.org/debian bullseye/main armhf libpaper-utils armhf 1.1.28+b1 [17.9 kB] Get: 343 http://deb.debian.org/debian bullseye/main armhf libpdfbox-java all 1:1.8.16-2 [5205 kB] Get: 344 http://deb.debian.org/debian bullseye/main armhf libptexenc1 armhf 2020.20200327.54578-7 [61.2 kB] Get: 345 http://deb.debian.org/debian bullseye/main armhf libpython3.9 armhf 3.9.2-1 [1447 kB] Get: 346 http://deb.debian.org/debian bullseye/main armhf libpython3.9-dev armhf 3.9.2-1 [3160 kB] Get: 347 http://deb.debian.org/debian bullseye/main armhf libpython3-dev armhf 3.9.2-3 [21.7 kB] Get: 348 http://deb.debian.org/debian bullseye/main armhf libqt5concurrent5 armhf 5.15.2+dfsg-9 [69.6 kB] Get: 349 http://deb.debian.org/debian bullseye/main armhf libqt5xml5 armhf 5.15.2+dfsg-9 [138 kB] Get: 350 http://deb.debian.org/debian bullseye/main armhf libqt5designer5 armhf 5.15.2-5 [2645 kB] Get: 351 http://deb.debian.org/debian bullseye/main armhf libqt5designercomponents5 armhf 5.15.2-5 [644 kB] Get: 352 http://deb.debian.org/debian bullseye/main armhf libqt5sql5 armhf 5.15.2+dfsg-9 [138 kB] Get: 353 http://deb.debian.org/debian bullseye/main armhf libqt5help5 armhf 5.15.2-5 [136 kB] Get: 354 http://deb.debian.org/debian bullseye/main armhf libqt5opengl5 armhf 5.15.2+dfsg-9 [154 kB] Get: 355 http://deb.debian.org/debian bullseye/main armhf libqt5test5 armhf 5.15.2+dfsg-9 [159 kB] Get: 356 http://deb.debian.org/debian bullseye/main armhf libvulkan-dev armhf 1.2.162.0-1 [586 kB] Get: 357 http://deb.debian.org/debian bullseye/main armhf x11proto-xext-dev all 2020.1-1 [3404 B] Get: 358 http://deb.debian.org/debian bullseye/main armhf libxext-dev armhf 2:1.3.3-1.1 [103 kB] Get: 359 http://deb.debian.org/debian bullseye/main armhf qt5-qmake-bin armhf 5.15.2+dfsg-9 [905 kB] Get: 360 http://deb.debian.org/debian bullseye/main armhf qtchooser armhf 66-2 [23.6 kB] Get: 361 http://deb.debian.org/debian bullseye/main armhf qt5-qmake armhf 5.15.2+dfsg-9 [249 kB] Get: 362 http://deb.debian.org/debian bullseye/main armhf qtbase5-dev-tools armhf 5.15.2+dfsg-9 [672 kB] Get: 363 http://deb.debian.org/debian bullseye/main armhf qtbase5-dev armhf 5.15.2+dfsg-9 [1095 kB] Get: 364 http://deb.debian.org/debian bullseye/main armhf libqt5opengl5-dev armhf 5.15.2+dfsg-9 [77.9 kB] Get: 365 http://deb.debian.org/debian bullseye/main armhf libqt5positioning5-plugins armhf 5.15.2+dfsg-2 [61.6 kB] Get: 366 http://deb.debian.org/debian bullseye/main armhf libqt5positioningquick5 armhf 5.15.2+dfsg-2 [41.6 kB] Get: 367 http://deb.debian.org/debian bullseye/main armhf libqt5qmlworkerscript5 armhf 5.15.2+dfsg-6 [42.2 kB] Get: 368 http://deb.debian.org/debian bullseye/main armhf libqt5quickparticles5 armhf 5.15.2+dfsg-6 [192 kB] Get: 369 http://deb.debian.org/debian bullseye/main armhf libqt5quickshapes5 armhf 5.15.2+dfsg-6 [93.5 kB] Get: 370 http://deb.debian.org/debian bullseye/main armhf libqt5quicktest5 armhf 5.15.2+dfsg-6 [61.2 kB] Get: 371 http://deb.debian.org/debian bullseye/main armhf libqt5quickwidgets5 armhf 5.15.2+dfsg-6 [45.8 kB] Get: 372 http://deb.debian.org/debian bullseye/main armhf libqt5sql5-sqlite armhf 5.15.2+dfsg-9 [81.5 kB] Get: 373 http://deb.debian.org/debian bullseye/main armhf qt5-qmltooling-plugins armhf 5.15.2+dfsg-6 [163 kB] Get: 374 http://deb.debian.org/debian bullseye/main armhf qtdeclarative5-dev-tools armhf 5.15.2+dfsg-6 [526 kB] Get: 375 http://deb.debian.org/debian bullseye/main armhf qtdeclarative5-dev armhf 5.15.2+dfsg-6 [437 kB] Get: 376 http://deb.debian.org/debian bullseye/main armhf libqt5webchannel5-dev armhf 5.15.2-2 [11.9 kB] Get: 377 http://deb.debian.org/debian bullseye/main armhf libqt5webengine-data all 5.15.2+dfsg-3 [6929 kB] Get: 378 http://deb.debian.org/debian bullseye/main armhf libre2-9 armhf 20210201+dfsg-1 [141 kB] Get: 379 http://deb.debian.org/debian bullseye/main armhf libwebpdemux2 armhf 0.6.1-2.1 [86.7 kB] Get: 380 http://deb.debian.org/debian bullseye/main armhf libxcomposite1 armhf 1:0.4.5-1 [16.1 kB] Get: 381 http://deb.debian.org/debian bullseye/main armhf libxcursor1 armhf 1:1.2.0-2 [34.2 kB] Get: 382 http://deb.debian.org/debian bullseye/main armhf libxi6 armhf 2:1.7.10-1 [78.5 kB] Get: 383 http://deb.debian.org/debian bullseye/main armhf libxrandr2 armhf 2:1.5.1-1 [34.9 kB] Get: 384 http://deb.debian.org/debian bullseye/main armhf libxss1 armhf 1:1.2.3-1 [17.2 kB] Get: 385 http://deb.debian.org/debian bullseye/main armhf libqt5webenginecore5 armhf 5.15.2+dfsg-3 [32.7 MB] Get: 386 http://deb.debian.org/debian bullseye/main armhf libqt5webengine5 armhf 5.15.2+dfsg-3 [150 kB] Get: 387 http://deb.debian.org/debian bullseye/main armhf libqt5webenginewidgets5 armhf 5.15.2+dfsg-3 [108 kB] Get: 388 http://deb.debian.org/debian bullseye/main armhf libsm-dev armhf 2:1.2.3-1 [36.1 kB] Get: 389 http://deb.debian.org/debian bullseye/main armhf libsynctex2 armhf 2020.20200327.54578-7 [70.2 kB] Get: 390 http://deb.debian.org/debian bullseye/main armhf libteckit0 armhf 2.5.10+ds1-3 [253 kB] Get: 391 http://deb.debian.org/debian bullseye/main armhf libtexlua53 armhf 2020.20200327.54578-7 [102 kB] Get: 392 http://deb.debian.org/debian bullseye/main armhf libtexluajit2 armhf 2020.20200327.54578-7 [205 kB] Get: 393 http://deb.debian.org/debian bullseye/main armhf libtidy5deb1 armhf 2:5.6.0-11 [177 kB] Get: 394 http://deb.debian.org/debian bullseye/main armhf libxt-dev armhf 1:1.2.0-1 [388 kB] Get: 395 http://deb.debian.org/debian bullseye/main armhf libxmu-headers all 2:1.1.2-2 [51.9 kB] Get: 396 http://deb.debian.org/debian bullseye/main armhf libxmu-dev armhf 2:1.1.2-2+b3 [59.3 kB] Get: 397 http://deb.debian.org/debian bullseye/main armhf libxrender-dev armhf 1:0.9.10-1 [37.8 kB] Get: 398 http://deb.debian.org/debian bullseye/main armhf libzzip-0-13 armhf 0.13.62-3.3+deb11u1 [52.0 kB] Get: 399 http://deb.debian.org/debian bullseye/main armhf preview-latex-style all 12.2-1 [201 kB] Get: 400 http://deb.debian.org/debian bullseye/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2+deb11u2 [185 kB] Get: 401 http://deb.debian.org/debian bullseye/main armhf python3.9-dev armhf 3.9.2-1 [515 kB] Get: 402 http://deb.debian.org/debian bullseye/main armhf python3-dev armhf 3.9.2-3 [24.8 kB] Get: 403 http://deb.debian.org/debian bullseye/main armhf python3-sip armhf 4.19.25+dfsg-1 [165 kB] Get: 404 http://deb.debian.org/debian bullseye/main armhf sip-dev armhf 4.19.25+dfsg-1 [242 kB] Get: 405 http://deb.debian.org/debian bullseye/main armhf python3-sip-dev armhf 4.19.25+dfsg-1 [120 kB] Get: 406 http://deb.debian.org/debian bullseye/main armhf qdoc-qt5 armhf 5.15.2-5 [514 kB] Get: 407 http://deb.debian.org/debian bullseye/main armhf qhelpgenerator-qt5 armhf 5.15.2-5 [58.1 kB] Get: 408 http://deb.debian.org/debian bullseye/main armhf qt5-assistant armhf 5.15.2-5 [336 kB] Get: 409 http://deb.debian.org/debian bullseye/main armhf qtattributionsscanner-qt5 armhf 5.15.2-5 [36.1 kB] Get: 410 http://deb.debian.org/debian bullseye/main armhf qtpositioning5-dev armhf 5.15.2+dfsg-2 [24.2 kB] Get: 411 http://deb.debian.org/debian bullseye/main armhf qttools5-dev-tools armhf 5.15.2-5 [913 kB] Get: 412 http://deb.debian.org/debian bullseye/main armhf qttools5-dev armhf 5.15.2-5 [184 kB] Get: 413 http://deb.debian.org/debian bullseye/main armhf qtwebengine5-dev armhf 5.15.2+dfsg-3 [68.9 kB] Get: 414 http://deb.debian.org/debian bullseye/main armhf t1utils armhf 1.41-4 [54.7 kB] Get: 415 http://deb.debian.org/debian bullseye/main armhf texlive-binaries armhf 2020.20200327.54578-7 [7626 kB] Get: 416 http://deb.debian.org/debian bullseye/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 417 http://deb.debian.org/debian bullseye/main armhf texlive-base all 2020.20210202-3 [20.8 MB] Get: 418 http://deb.debian.org/debian bullseye/main armhf texlive-fonts-recommended all 2020.20210202-3 [5002 kB] Get: 419 http://deb.debian.org/debian bullseye/main armhf texlive-latex-base all 2020.20210202-3 [1120 kB] Get: 420 http://deb.debian.org/debian bullseye/main armhf texlive-latex-recommended all 2020.20210202-3 [14.5 MB] Get: 421 http://deb.debian.org/debian bullseye/main armhf texlive-pictures all 2020.20210202-3 [6743 kB] Get: 422 http://deb.debian.org/debian bullseye/main armhf texlive-latex-extra all 2020.20210202-3 [13.7 MB] Get: 423 http://deb.debian.org/debian bullseye/main armhf tidy armhf 2:5.6.0-11 [33.2 kB] Fetched 331 MB in 1min 37s (3404 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19447 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-8+deb11u1_armhf.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../001-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_armhf.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../003-libpipeline1_1.5.3-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_armhf.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../005-libsigsegv2_2.13-1_armhf.deb ... Unpacking libsigsegv2:armhf (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../006-m4_1.4.18-5_armhf.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package flex. Preparing to unpack .../007-flex_2.6.4-8_armhf.deb ... Unpacking flex (2.6.4-8) ... Selecting previously unselected package libglvnd0:armhf. Preparing to unpack .../008-libglvnd0_1.3.2-1_armhf.deb ... Unpacking libglvnd0:armhf (1.3.2-1) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../009-libdrm-common_2.4.104-1_all.deb ... Unpacking libdrm-common (2.4.104-1) ... Selecting previously unselected package libdrm2:armhf. Preparing to unpack .../010-libdrm2_2.4.104-1_armhf.deb ... Unpacking libdrm2:armhf (2.4.104-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../011-libexpat1_2.2.10-2+deb11u5_armhf.deb ... Unpacking libexpat1:armhf (2.2.10-2+deb11u5) ... Selecting previously unselected package libwayland-server0:armhf. Preparing to unpack .../012-libwayland-server0_1.18.0-2~exp1.1_armhf.deb ... Unpacking libwayland-server0:armhf (1.18.0-2~exp1.1) ... Selecting previously unselected package libgbm1:armhf. Preparing to unpack .../013-libgbm1_20.3.5-1_armhf.deb ... Unpacking libgbm1:armhf (20.3.5-1) ... Selecting previously unselected package libglapi-mesa:armhf. Preparing to unpack .../014-libglapi-mesa_20.3.5-1_armhf.deb ... Unpacking libglapi-mesa:armhf (20.3.5-1) ... Selecting previously unselected package libwayland-client0:armhf. Preparing to unpack .../015-libwayland-client0_1.18.0-2~exp1.1_armhf.deb ... Unpacking libwayland-client0:armhf (1.18.0-2~exp1.1) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../016-libxau6_1%3a1.0.9-1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.9-1) ... Selecting previously unselected package libmd0:armhf. Preparing to unpack .../017-libmd0_1.0.3-3_armhf.deb ... Unpacking libmd0:armhf (1.0.3-3) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../018-libbsd0_0.11.3-1_armhf.deb ... Unpacking libbsd0:armhf (0.11.3-1) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../019-libxdmcp6_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../020-libxcb1_1.14-3_armhf.deb ... Unpacking libxcb1:armhf (1.14-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../021-libx11-data_2%3a1.7.2-1_all.deb ... Unpacking libx11-data (2:1.7.2-1) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../022-libx11-6_2%3a1.7.2-1_armhf.deb ... Unpacking libx11-6:armhf (2:1.7.2-1) ... Selecting previously unselected package libx11-xcb1:armhf. Preparing to unpack .../023-libx11-xcb1_2%3a1.7.2-1_armhf.deb ... Unpacking libx11-xcb1:armhf (2:1.7.2-1) ... Selecting previously unselected package libxcb-dri2-0:armhf. Preparing to unpack .../024-libxcb-dri2-0_1.14-3_armhf.deb ... Unpacking libxcb-dri2-0:armhf (1.14-3) ... Selecting previously unselected package libxcb-dri3-0:armhf. Preparing to unpack .../025-libxcb-dri3-0_1.14-3_armhf.deb ... Unpacking libxcb-dri3-0:armhf (1.14-3) ... Selecting previously unselected package libxcb-present0:armhf. Preparing to unpack .../026-libxcb-present0_1.14-3_armhf.deb ... Unpacking libxcb-present0:armhf (1.14-3) ... Selecting previously unselected package libxcb-sync1:armhf. Preparing to unpack .../027-libxcb-sync1_1.14-3_armhf.deb ... Unpacking libxcb-sync1:armhf (1.14-3) ... Selecting previously unselected package libxcb-xfixes0:armhf. Preparing to unpack .../028-libxcb-xfixes0_1.14-3_armhf.deb ... Unpacking libxcb-xfixes0:armhf (1.14-3) ... Selecting previously unselected package libxshmfence1:armhf. Preparing to unpack .../029-libxshmfence1_1.3-1_armhf.deb ... Unpacking libxshmfence1:armhf (1.3-1) ... Selecting previously unselected package libegl-mesa0:armhf. Preparing to unpack .../030-libegl-mesa0_20.3.5-1_armhf.deb ... Unpacking libegl-mesa0:armhf (20.3.5-1) ... Selecting previously unselected package libegl1:armhf. Preparing to unpack .../031-libegl1_1.3.2-1_armhf.deb ... Unpacking libegl1:armhf (1.3.2-1) ... Selecting previously unselected package libgles2:armhf. Preparing to unpack .../032-libgles2_1.3.2-1_armhf.deb ... Unpacking libgles2:armhf (1.3.2-1) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../033-libglib2.0-0_2.66.8-1_armhf.deb ... Unpacking libglib2.0-0:armhf (2.66.8-1) ... Selecting previously unselected package libcap2:armhf. Preparing to unpack .../034-libcap2_1%3a2.44-1_armhf.deb ... Unpacking libcap2:armhf (1:2.44-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../035-libelf1_0.183-1_armhf.deb ... Unpacking libelf1:armhf (0.183-1) ... Selecting previously unselected package libdw1:armhf. Preparing to unpack .../036-libdw1_0.183-1_armhf.deb ... Unpacking libdw1:armhf (0.183-1) ... Selecting previously unselected package libunwind8:armhf. Preparing to unpack .../037-libunwind8_1.3.2-2_armhf.deb ... Unpacking libunwind8:armhf (1.3.2-2) ... Selecting previously unselected package libcap2-bin. Preparing to unpack .../038-libcap2-bin_1%3a2.44-1_armhf.deb ... Unpacking libcap2-bin (1:2.44-1) ... Selecting previously unselected package libgstreamer1.0-0:armhf. Preparing to unpack .../039-libgstreamer1.0-0_1.18.4-2.1_armhf.deb ... Unpacking libgstreamer1.0-0:armhf (1.18.4-2.1) ... Selecting previously unselected package liborc-0.4-0:armhf. Preparing to unpack .../040-liborc-0.4-0_1%3a0.4.32-1_armhf.deb ... Unpacking liborc-0.4-0:armhf (1:0.4.32-1) ... Selecting previously unselected package iso-codes. Preparing to unpack .../041-iso-codes_4.6.0-1_all.deb ... Unpacking iso-codes (4.6.0-1) ... Selecting previously unselected package libgstreamer-plugins-base1.0-0:armhf. Preparing to unpack .../042-libgstreamer-plugins-base1.0-0_1.18.4-2_armhf.deb ... Unpacking libgstreamer-plugins-base1.0-0:armhf (1.18.4-2) ... Selecting previously unselected package libhyphen0:armhf. Preparing to unpack .../043-libhyphen0_2.8.8-7_armhf.deb ... Unpacking libhyphen0:armhf (2.8.8-7) ... Selecting previously unselected package libicu67:armhf. Preparing to unpack .../044-libicu67_67.1-7_armhf.deb ... 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Setting up libicu-dev:armhf (67.1-7) ... Setting up libxml2:armhf (2.9.10+dfsg-6.7+deb11u3) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up iso-codes (4.6.0-1) ... Setting up libgudev-1.0-0:armhf (234-1) ... Setting up libzvbi-common (0.2.35-18) ... Setting up chrpath (0.16-2+b1) ... Setting up libprocps8:armhf (2:3.3.17-5) ... Setting up qtchooser (66-2) ... Setting up libmp3lame0:armhf (3.100-3) ... Setting up libvorbisenc2:armhf (1.3.7-1) ... Setting up libsynctex2:armhf (2020.20200327.54578-7) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libboost-thread1.74.0:armhf (1.74.0-9) ... Setting up libwacom-common (1.8-2) ... Setting up libxkbcommon0:armhf (1.0.3-2) ... Setting up libwayland-client0:armhf (1.18.0-2~exp1.1) ... Setting up libgs9-common (9.53.3~dfsg-7+deb11u2) ... Setting up x11proto-dev (2020.1-1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... 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Setting up libvorbisfile3:armhf (1.3.7-1) ... Setting up libxdmcp-dev:armhf (1:1.1.2-3) ... Setting up libxcb-xinerama0:armhf (1.14-3) ... Setting up libllvm11:armhf (1:11.0.1-2) ... Setting up libptexenc1:armhf (2020.20200327.54578-7) ... Setting up libfreetype6:armhf (2.10.4+dfsg-1+deb11u1) ... Setting up libxcb-sync1:armhf (1.14-3) ... Setting up shared-mime-info (2.0-1) ... Setting up libxkbcommon-x11-0:armhf (1.0.3-2) ... Setting up libeigen3-dev (3.3.9-2) ... Setting up libclang1-11 (1:11.0.1-2) ... Setting up ucf (3.0043) ... Setting up libqt5core5a:armhf (5.15.2+dfsg-9) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up libboost-serialization1.74-dev:armhf (1.74.0-9) ... Setting up libxcb-dri2-0:armhf (1.14-3) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up libgvpr2:armhf (2.42.2-5) ... Setting up x11proto-xext-dev (2020.1-1) ... Setting up libdrm2:armhf (2.4.104-1) ... Setting up dwz (0.13+20210201-1) ... Setting up libboost-regex1.74-dev:armhf (1.74.0-9) ... Setting up libva-drm2:armhf (2.10.0-1) ... Setting up groff-base (1.22.4-6) ... Setting up libqt5dbus5:armhf (5.15.2+dfsg-9) ... Setting up libxcb-randr0:armhf (1.14-3) ... Setting up procps (2:3.3.17-5) ... Setting up libxslt1.1:armhf (1.1.34-4+deb11u1) ... Setting up bison (2:3.7.5+dfsg-1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libcurl4:armhf (7.74.0-1.3+deb11u3) ... Setting up libx11-6:armhf (2:1.7.2-1) ... Setting up libharfbuzz0b:armhf (2.7.4-1) ... Setting up libgdk-pixbuf-2.0-0:armhf (2.42.2+dfsg-1+deb11u1) ... Setting up libqt5sensors5:armhf (5.15.2-2) ... Setting up libqt5test5:armhf (5.15.2+dfsg-9) ... Setting up libboost-regex-dev:armhf (1.74.0.3) ... Setting up libwacom2:armhf (1.8-2) ... Setting up libxcomposite1:armhf (1:0.4.5-1) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libfftw3-dev:armhf (3.3.8-2) ... Setting up libqt5concurrent5:armhf (5.15.2+dfsg-9) ... Setting up libopenmpt0:armhf (0.4.11-1) ... Setting up libavahi-client3:armhf (0.8-5+deb11u1) ... Setting up libgstreamer1.0-0:armhf (1.18.4-2.1) ... Setcap worked! gst-ptp-helper is not suid! Setting up libpython3.9-stdlib:armhf (3.9.2-1) ... Setting up libpython3-stdlib:armhf (3.9.2-3) ... Setting up libdrm-amdgpu1:armhf (2.4.104-1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:armhf (1.14-3) ... Setting up libpaper1:armhf (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libx11-xcb1:armhf (2:1.7.2-1) ... Setting up flex (2.6.4-8) ... Setting up libdrm-nouveau2:armhf (2.4.104-1) ... Setting up libxdamage1:armhf (1:1.1.5-2) ... Setting up libxcb1-dev:armhf (1.14-3) ... Setting up libxpm4:armhf (1:3.5.12-1) ... Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up libgbm1:armhf (20.3.5-1) ... Setting up libsm-dev:armhf (2:1.2.3-1) ... Setting up libdrm-radeon1:armhf (2.4.104-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up qdoc-qt5 (5.15.2-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libqt5positioning5:armhf (5.15.2+dfsg-2) ... Setting up libgl1-mesa-dri:armhf (20.3.5-1) ... Setting up libx11-dev:armhf (2:1.7.2-1) ... Setting up libxext6:armhf (2:1.3.3-1.1) ... Setting up libgstreamer-plugins-base1.0-0:armhf (1.18.4-2) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libqt5network5:armhf (5.15.2+dfsg-9) ... Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ... Setting up libinput-bin (1.16.4-3) ... Setting up libclang-cpp11 (1:11.0.1-2) ... Setting up libqt5sql5:armhf (5.15.2+dfsg-9) ... Setting up libboost-iostreams1.74-dev:armhf (1.74.0-9) ... Setting up dh-autoreconf (20) ... Setting up tex-common (6.16) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libboost-date-time1.74-dev:armhf (1.74.0-9) ... Setting up qtbase5-dev-tools (5.15.2+dfsg-9) ... Setting up libqt5xml5:armhf (5.15.2+dfsg-9) ... Setting up libegl-mesa0:armhf (20.3.5-1) ... Setting up doxygen (1.9.1-1) ... Setting up libpython3.9:armhf (3.9.2-1) ... Setting up libxfixes3:armhf (1:5.0.3-2) ... Setting up libqt5qml5:armhf (5.15.2+dfsg-6) ... Setting up qtattributionsscanner-qt5 (5.15.2-5) ... Setting up libxrandr2:armhf (2:1.5.1-1) ... Setting up libqt5webchannel5:armhf (5.15.2-2) ... Setting up libxt6:armhf (1:1.2.0-1) ... Setting up libxext-dev:armhf (2:1.3.3-1.1) ... Setting up libcups2:armhf (2.3.3op2-3+deb11u2) ... Setting up libvdpau1:armhf (1.4-3) ... Setting up libegl1:armhf (1.3.2-1) ... Setting up cmake (3.18.4-2+deb11u1) ... Setting up libboost-thread1.74-dev:armhf (1.74.0-9) ... Setting up libqt5positioning5-plugins:armhf (5.15.2+dfsg-2) ... Setting up libxss1:armhf (1:1.2.3-1) ... Setting up libfontconfig1:armhf (2.13.1-4.2) ... Setting up libbluray2:armhf (1:1.2.1-4+deb11u2) ... Setting up libva-x11-2:armhf (2.10.0-1) ... Setting up libxrender-dev:armhf (1:0.9.10-1) ... Setting up python3.9 (3.9.2-1) ... Setting up libboost-thread-dev:armhf (1.74.0.3) ... Setting up libinput10:armhf (1.16.4-3) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libxmu-headers (2:1.1.2-2) ... Setting up libxmu6:armhf (2:1.1.2-2+b3) ... Setting up libqt5qmlmodels5:armhf (5.15.2+dfsg-6) ... Setting up libglx-mesa0:armhf (20.3.5-1) ... Setting up libqt5sql5-sqlite:armhf (5.15.2+dfsg-9) ... Setting up libgs9:armhf (9.53.3~dfsg-7+deb11u2) ... Setting up libxi6:armhf (2:1.7.10-1) ... Setting up libglx0:armhf (1.3.2-1) ... Setting up preview-latex-style (12.2-1) ... Setting up libxcursor1:armhf (1:1.2.0-2) ... Setting up libpango-1.0-0:armhf (1.46.2-3) ... Setting up libqt5gui5:armhf (5.15.2+dfsg-9) ... Setting up libpython3.9-dev:armhf (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up libqt5widgets5:armhf (5.15.2+dfsg-9) ... Setting up python3 (3.9.2-3) ... Setting up libxaw7:armhf (2:1.0.13-1.1) ... Setting up libboost-iostreams-dev:armhf (1.74.0.3) ... Setting up ghostscript (9.53.3~dfsg-7+deb11u2) ... Setting up libqt5help5:armhf (5.15.2-5) ... Setting up libcairo2:armhf (1.16.0-5) ... Setting up libavutil56:armhf (7:4.3.5-0+deb11u1) ... Setting up libqt5qmlworkerscript5:armhf (5.15.2+dfsg-6) ... Setting up libqt5printsupport5:armhf (5.15.2+dfsg-9) ... Setting up libgl1:armhf (1.3.2-1) ... Setting up libxt-dev:armhf (1:1.2.0-1) ... Setting up libgd3:armhf (2.3.0-2) ... Setting up python3.9-dev (3.9.2-1) ... Setting up libglew2.1:armhf (2.1.0-4+b1) ... Setting up libqt5opengl5:armhf (5.15.2+dfsg-9) ... Setting up texlive-binaries (2020.20200327.54578-7) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libtheora0:armhf (1.1.1+dfsg.1-15) ... Setting up libglx-dev:armhf (1.3.2-1) ... Setting up libcairo-gobject2:armhf (1.16.0-5) ... Setting up libglu1-mesa:armhf (9.0.1-1) ... Setting up libpangoft2-1.0-0:armhf (1.46.2-3) ... Setting up libqt5quick5:armhf (5.15.2+dfsg-6) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up texlive-base (2020.20210202-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up libgl-dev:armhf (1.3.2-1) ... Setting up libpangocairo-1.0-0:armhf (1.46.2-3) ... Setting up python3-sip (4.19.25+dfsg-1) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up libqt5quickshapes5:armhf (5.15.2+dfsg-6) ... Setting up libqt5quicktest5:armhf (5.15.2+dfsg-6) ... Setting up libqt5positioningquick5:armhf (5.15.2+dfsg-2) ... Setting up libpython3-dev:armhf (3.9.2-3) ... Setting up libqt5designer5:armhf (5.15.2-5) ... Setting up libegl-dev:armhf (1.3.2-1) ... Setting up qtdeclarative5-dev-tools (5.15.2+dfsg-6) ... Setting up qhelpgenerator-qt5 (5.15.2-5) ... Setting up libqt5webkit5:armhf (5.212.0~alpha4-11) ... Setting up libqt5designercomponents5:armhf (5.15.2-5) ... Setting up libswresample3:armhf (7:4.3.5-0+deb11u1) ... Setting up libxmu-dev:armhf (2:1.1.2-2+b3) ... Setting up qt5-qmltooling-plugins:armhf (5.15.2+dfsg-6) ... Setting up libqt5quickwidgets5:armhf (5.15.2+dfsg-6) ... Setting up librsvg2-2:armhf (2.50.3+dfsg-1) ... Setting up texlive-latex-base (2020.20210202-3) ... Setting up python3-dev (3.9.2-3) ... Setting up texlive-latex-recommended (2020.20210202-3) ... Setting up libglu1-mesa-dev:armhf (9.0.1-1) ... Setting up libgvc6 (2.42.2-5) ... Setting up texlive-pictures (2020.20210202-3) ... Setting up qt5-assistant (5.15.2-5) ... Setting up qttools5-dev-tools (5.15.2-5) ... Setting up texlive-fonts-recommended (2020.20210202-3) ... Setting up libavcodec58:armhf (7:4.3.5-0+deb11u1) ... Setting up libqt5quickparticles5:armhf (5.15.2+dfsg-6) ... Setting up libgles-dev:armhf (1.3.2-1) ... Setting up libchromaprint1:armhf (1.5.0-2) ... Setting up graphviz (2.42.2-5) ... Setting up libavformat58:armhf (7:4.3.5-0+deb11u1) ... Setting up python3-sip-dev (4.19.25+dfsg-1) ... Setting up texlive-latex-extra (2020.20210202-3) ... Setting up libglew-dev:armhf (2.1.0-4+b1) ... Setting up qtbase5-dev:armhf (5.15.2+dfsg-9) ... Setting up qtdeclarative5-dev:armhf (5.15.2+dfsg-6) ... Setting up libqt5webenginecore5:armhf (5.15.2+dfsg-3) ... Setting up libqt5opengl5-dev:armhf (5.15.2+dfsg-9) ... Setting up qtpositioning5-dev:armhf (5.15.2+dfsg-2) ... Setting up libqt5webengine5:armhf (5.15.2+dfsg-3) ... Setting up qttools5-dev:armhf (5.15.2-5) ... Setting up libqt5webchannel5-dev:armhf (5.15.2-2) ... Setting up libqt5webenginewidgets5:armhf (5.15.2+dfsg-3) ... Setting up qtwebengine5-dev:armhf (5.15.2+dfsg-3) ... Processing triggers for libc-bin (2.31-13+deb11u5) ... Processing triggers for tex-common (6.16) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/ball-1.5.0+git20180813.37fc53c/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ball_1.5.0+git20180813.37fc53c-6_source.changes dpkg-buildpackage: info: source package ball dpkg-buildpackage: info: source version 1.5.0+git20180813.37fc53c-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --buildsystem=cmake --builddirectory=build --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/ball-1.5.0+git20180813.37fc53c' [ -d source ] && cd source ; \ if [ -f Makefile ] ; \ then \ make clean ; \ cd PYTHON/EXTENSIONS; \ make clean; \ rm -rf ../lib/Linux*; \ rm -rf ../doc/doxygen/latex/*; \ rm -f /build/ball-1.5.0+git20180813.37fc53c/source/config.status 2>/dev/null; \ fi rm -f data/BALLView/translations/BALLView.de_DE.qm rm -f data/BALLView/translations/BALLView.zh_TW.qm rm -f doc/TUTORIAL/*.aux rm -rf build find . -name "*.o" | xargs -r rm find . -type l | xargs -r rm find doc/TUTORIAL/ -name "tutorial.*" | egrep -v ".(tex|bib)$" |xargs -r rm rm -f include/BALL/BALL.doc # find . -name "*.doc" -delete # Remove self-create UI header file rm -f include/BALL/VIEW/UIC/ui_assignBondOrderConfigurationDialog.h \ include/BALL/VIEW/UIC/ui_assignBondOrderResultsDialog.h \ include/BALL/VIEW/UIC/ui_atomOverview.h make[1]: Leaving directory '/build/ball-1.5.0+git20180813.37fc53c' dh_autoreconf_clean -O--buildsystem=cmake -O--builddirectory=build dh_clean -O--buildsystem=cmake -O--builddirectory=build rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libball1.5-data.substvars debian/libball1.5.substvars debian/libball1.5-dev.substvars debian/libballview1.5.substvars debian/libballview1.5-dev.substvars debian/python3-ball.substvars debian/ballview.substvars debian/libball1.5-doc.substvars debian/files rm -fr -- debian/libball1.5-data/ debian/tmp/ debian/libball1.5/ debian/libball1.5-dev/ debian/libballview1.5/ debian/libballview1.5-dev/ debian/python3-ball/ debian/ballview/ debian/libball1.5-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build dh build --buildsystem=cmake --builddirectory=build --with python3 dh_update_autotools_config -O--buildsystem=cmake -O--builddirectory=build dh_autoreconf -O--buildsystem=cmake -O--builddirectory=build debian/rules override_dh_auto_configure make[1]: Entering directory '/build/ball-1.5.0+git20180813.37fc53c' mkdir -p build cd build && LDFLAGS="-Wl,-z,relro -Wl,-z,now" CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security" CFLAGS="-g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" \ cmake .. -DCMAKE_SOURCE_DIR=/build/ball-1.5.0+git20180813.37fc53c -DCMAKE_INSTALL_PREFIX=./usr \ -DBALL_PATH=/usr -DBALL_DATA_PATH=/usr/share/BALL-1.5/data \ -DCMAKE_VERBOSE_MAKEFILE=ON CMake Deprecation Warning at CMakeLists.txt:10 (CMAKE_POLICY): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler checks for conversion: OFF -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- Check size of char -- Check size of char - done -- Check size of short -- Check size of short - done -- Check size of int -- Check size of int - done -- Check size of long -- Check size of long - done -- Check size of size_t -- Check size of size_t - done -- Check size of void* -- Check size of void* - done -- Check size of unsigned short -- Check size of unsigned short - done -- Check size of unsigned int -- Check size of unsigned int - done -- Check size of unsigned long -- Check size of unsigned long - done -- Check size of unsigned long long -- Check size of unsigned long long - done -- Check size of float -- Check size of float - done -- Check size of double -- Check size of double - done -- Check size of uint64_t -- Check size of uint64_t - done -- Check size of uint32_t -- Check size of uint32_t - done -- Check size of uint16_t -- Check size of uint16_t - done -- Looking for C++ include unistd.h -- Looking for C++ include unistd.h - found -- Looking for C++ include process.h -- Looking for C++ include process.h - not found -- Looking for C++ include time.h -- Looking for C++ include time.h - found -- Looking for C++ include dirent.h -- Looking for C++ include dirent.h - found -- Looking for C++ include direct.h -- Looking for C++ include direct.h - not found -- Looking for C++ include pwd.h -- Looking for C++ include pwd.h - found -- Looking for C++ include stdint.h -- Looking for C++ include stdint.h - found -- Looking for C++ include sys/time.h -- Looking for C++ include sys/time.h - found -- Looking for C++ include sys/stat.h -- Looking for C++ include sys/stat.h - found -- Looking for C++ include sys/times.h -- Looking for C++ include sys/times.h - found -- Looking for C++ include sys/types.h -- Looking for C++ include sys/types.h - found -- Looking for C++ include sys/param.h -- Looking for C++ include sys/param.h - found -- Looking for C++ include sys/sysinfo.h -- Looking for C++ include sys/sysinfo.h - found -- Performing Test BALL_HAS_MODE_T -- Performing Test BALL_HAS_MODE_T - Success -- Looking for C++ include ieeefp.h -- Looking for C++ include ieeefp.h - not found -- Looking for kill -- Looking for kill - found -- Looking for sysconf -- Looking for sysconf - found -- Performing Test BALL_ALLOW_LONG64_TYPE_OVERLOADS -- Performing Test BALL_ALLOW_LONG64_TYPE_OVERLOADS - Success -- Performing Test BALL_HAS_THREAD_LOCAL -- Performing Test BALL_HAS_THREAD_LOCAL - Success -- Performing Test BALL_HAS_NOEXCEPT -- Performing Test BALL_HAS_NOEXCEPT - Success -- Performing Test BALL_HAS_STD_STRING_CONST_ITERATOR_FUNCTIONS -- Performing Test BALL_HAS_STD_STRING_CONST_ITERATOR_FUNCTIONS - Success -- Performing Test BALL_HAS_STD_STRING_CONST_ITERATOR_INITLIST_INSERT -- Performing Test BALL_HAS_STD_STRING_CONST_ITERATOR_INITLIST_INSERT - Success -- Looking for vsnprintf -- Looking for vsnprintf - found -- [GCC only] STL debug mode: OFF -- Found BISON: /usr/bin/bison -- Found FLEX: /usr/bin/flex -- Checking for yylex_destroy support in flex -- Checking for yylex_destroy support in flex - Not found -- Looking for C++ include rpc/types.h -- Looking for C++ include rpc/types.h - found -- Performing Test XDR_HAS_RPC_XDR_H -- Performing Test XDR_HAS_RPC_XDR_H - Success -- Looking for xdr_int -- Looking for xdr_int - found -- Looking for xdr_u_hyper -- Looking for xdr_u_hyper - found -- Looking for 64-bit XDR type (for xdr_u_hyper) -- Performing Test XDR_64Bit_Type -- Performing Test XDR_64Bit_Type - Success -- Performing Test BALL_XDRREC_CREATE_CHAR_CHAR_INT -- Performing Test BALL_XDRREC_CREATE_CHAR_CHAR_INT - Success -- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.55") found components: chrono date_time iostreams regex serialization system thread -- Could NOT find LPSolve (missing: LPSOLVE_LIBRARIES LPSOLVE_INCLUDE_PATH LPSOLVE_LINKS) -- Looking for math.h -- Looking for math.h - found CMake Warning (dev) at /usr/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:273 (message): The package name passed to `find_package_handle_standard_args` (LibSVM) does not match the name of the calling package (libSVM). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindlibSVM.cmake:165 (find_package_handle_standard_args) CMakeLists.txt:196 (FIND_PACKAGE) This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find LibSVM (missing: LIBSVM_LIBRARY LIBSVM_INCLUDE_DIR LIBSVM_INCLUDE_DIRS LIBSVM_ROOT_DIR) -- [Warning] FindTBB.cmake: The use of TBB_ARCHITECTURE and TBB_COMPILER is deprecated and may not be supported in future versions. Please set (using tbbvars.[bat|csh|sh]). -- Looked for Threading Building Blocks in /opt/intel/tbb;/usr/local/include;/usr/include;/usr -- Intel Threading Building Blocks not found! -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) Reason given by package: MPI component 'Fortran' was requested, but language Fortran is not enabled. -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found OpenGL: /usr/lib/arm-linux-gnueabihf/libGL.so -- Found GLEW: /usr/include (found version "2.1.0") -- Could not find RTfact header file (RTpie/IRayTracer.hpp)! Real time ray tracing will be disabled! -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.9.2", minimum required is "3") -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so (found suitable version "3.9.2", minimum required is "3") -- Found SIP version: 4.19.25 -- Could NOT find SIP (missing: SIP_LIBRARIES) (Required is at least version "4.8") -- Disabling python support. -- Setting CTDSchema version to its default value (v1.7) -- Setting CTDConverter version to its default value (v2.0) -- Could not find SpaceNavigator libraries. Disabling the SpaceNavigator plugin -- Could not find VRPN libraries. Disabling the VRPN plugin -- Could not find VRPN libraries. Disabling the VRPNHD plugin -- Python support has not been enabled. Disabling the Jupyter plugin. -- Found Doxygen: /usr/bin/doxygen (found version "1.9.1") found components: doxygen dot -- Found LATEX: /usr/bin/latex -- -- ----------------------------------------------------------------- -- -- You have successfully configured BALL. -- -- For a full list of make targets execute: -- 'make targets' -- -- ----------------------------------------------------------------- -- -- Configuring done -- Generating done -- Build files have been written to: /build/ball-1.5.0+git20180813.37fc53c/build make[1]: Leaving directory '/build/ball-1.5.0+git20180813.37fc53c' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/ball-1.5.0+git20180813.37fc53c' ## Fix upstream issue of missing UI files ## ... ## Uhmmm, seems we need to do this for all UI files mentioned in ## source/VIEW/DIALOGS/sources.cmake ## but I really hope some cmake expert might be able to find a clue ## how to trigger cmake to do it as intended by upstream. ## Somehow the code ## ADD_BALL_UIFILES("VIEW/DIALOGS" "") ## needs to be called before the build code below can be started make -C build BALL VIEW BALLView build_tests install make[2]: Entering directory '/build/ball-1.5.0+git20180813.37fc53c/build' /usr/bin/cmake -S/build/ball-1.5.0+git20180813.37fc53c -B/build/ball-1.5.0+git20180813.37fc53c/build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 BALL make[3]: Entering directory '/build/ball-1.5.0+git20180813.37fc53c/build' /usr/bin/cmake -S/build/ball-1.5.0+git20180813.37fc53c -B/build/ball-1.5.0+git20180813.37fc53c/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/ball-1.5.0+git20180813.37fc53c/build/CMakeFiles 21 make -f CMakeFiles/Makefile2 CMakeFiles/BALL.dir/all make[4]: Entering directory '/build/ball-1.5.0+git20180813.37fc53c/build' make -f CMakeFiles/BALL_autogen.dir/build.make CMakeFiles/BALL_autogen.dir/depend make[5]: Entering directory '/build/ball-1.5.0+git20180813.37fc53c/build' cd /build/ball-1.5.0+git20180813.37fc53c/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/ball-1.5.0+git20180813.37fc53c /build/ball-1.5.0+git20180813.37fc53c /build/ball-1.5.0+git20180813.37fc53c/build /build/ball-1.5.0+git20180813.37fc53c/build /build/ball-1.5.0+git20180813.37fc53c/build/CMakeFiles/BALL_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target BALL_autogen make[5]: Leaving directory '/build/ball-1.5.0+git20180813.37fc53c/build' make -f CMakeFiles/BALL_autogen.dir/build.make CMakeFiles/BALL_autogen.dir/build make[5]: Entering directory '/build/ball-1.5.0+git20180813.37fc53c/build' [ 0%] [BISON][smilesParserParser] Building parser with bison 3.7.5 cd /build/ball-1.5.0+git20180813.37fc53c && /usr/bin/bison --defines=/build/ball-1.5.0+git20180813.37fc53c/build/source/STRUCTURE/smilesParserParser.h -pSmilesParser -d -o /build/ball-1.5.0+git20180813.37fc53c/build/source/STRUCTURE/smilesParserParser.C source/STRUCTURE/smilesParserParser.y [ 0%] [FLEX][CIFParserLexer] Building scanner with flex 2.6.4 cd /build/ball-1.5.0+git20180813.37fc53c && /usr/bin/flex -PCIFParser -o/build/ball-1.5.0+git20180813.37fc53c/build/source/FORMAT/CIFParserLexer.C source/FORMAT/CIFParserLexer.l [ 0%] [BISON][CIFParserParser] Building parser with bison 3.7.5 cd /build/ball-1.5.0+git20180813.37fc53c && /usr/bin/bison --defines=/build/ball-1.5.0+git20180813.37fc53c/build/source/FORMAT/CIFParserParser.h -pCIFParser -d -o /build/ball-1.5.0+git20180813.37fc53c/build/source/FORMAT/CIFParserParser.C source/FORMAT/CIFParserParser.y source/FORMAT/CIFParserParser.y: warning: 5 shift/reduce conflicts [-Wconflicts-sr] source/FORMAT/CIFParserParser.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples [ 0%] [FLEX][GAMESSDatParserLexer] Building scanner with flex 2.6.4 cd /build/ball-1.5.0+git20180813.37fc53c && /usr/bin/flex -PGAMESSDatParser -o/build/ball-1.5.0+git20180813.37fc53c/build/source/FORMAT/GAMESSDatParserLexer.C source/FORMAT/GAMESSDatParserLexer.l [ 0%] [BISON][GAMESSDatParserParser] Building parser with bison 3.7.5 cd /build/ball-1.5.0+git20180813.37fc53c && /usr/bin/bison --defines=/build/ball-1.5.0+git20180813.37fc53c/build/source/FORMAT/GAMESSDatParserParser.h -pGAMESSDatParser -d -o /build/ball-1.5.0+git20180813.37fc53c/build/source/FORMAT/GAMESSDatParserParser.C source/FORMAT/GAMESSDatParserParser.y source/FORMAT/GAMESSDatParserParser.y: warning: 3 shift/reduce conflicts [-Wconflicts-sr] source/FORMAT/GAMESSDatParserParser.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples [ 0%] [FLEX][expressionParserLexer] Building scanner with flex 2.6.4 cd /build/ball-1.5.0+git20180813.37fc53c && /usr/bin/flex -PExpressionParser -o/build/ball-1.5.0+git20180813.37fc53c/build/source/KERNEL/expressionParserLexer.C source/KERNEL/expressionParserLexer.l [ 0%] [BISON][expressionParserParser] Building parser with bison 3.7.5 cd /build/ball-1.5.0+git20180813.37fc53c && /usr/bin/bison --defines=/build/ball-1.5.0+git20180813.37fc53c/build/source/KERNEL/expressionParserParser.h -pExpressionParser -d -o /build/ball-1.5.0+git20180813.37fc53c/build/source/KERNEL/expressionParserParser.C source/KERNEL/expressionParserParser.y [ 0%] [FLEX][parsedFunctionLexer] Building scanner with flex 2.6.4 cd /build/ball-1.5.0+git20180813.37fc53c && /usr/bin/flex -PParsedFunction -o/build/ball-1.5.0+git20180813.37fc53c/build/source/MATHS/parsedFunctionLexer.C source/MATHS/parsedFunctionLexer.l [ 0%] [BISON][parsedFunctionParser] Building parser with bison 3.7.5 cd /build/ball-1.5.0+git20180813.37fc53c && /usr/bin/bison --defines=/build/ball-1.5.0+git20180813.37fc53c/build/source/MATHS/parsedFunctionParser.h -pParsedFunction -d -o /build/ball-1.5.0+git20180813.37fc53c/build/source/MATHS/parsedFunctionParser.C source/MATHS/parsedFunctionParser.y [ 0%] [FLEX][GAFFCESParserLexer] Building scanner with flex 2.6.4 cd /build/ball-1.5.0+git20180813.37fc53c && /usr/bin/flex -PGAFFCESParser -o/build/ball-1.5.0+git20180813.37fc53c/build/source/MOLMEC/AMBER/GAFFCESParserLexer.C source/MOLMEC/AMBER/GAFFCESParserLexer.l [ 0%] [BISON][GAFFCESParserParser] Building parser with bison 3.7.5 cd /build/ball-1.5.0+git20180813.37fc53c && /usr/bin/bison --defines=/build/ball-1.5.0+git20180813.37fc53c/build/source/MOLMEC/AMBER/GAFFCESParserParser.h -pGAFFCESParser -d -o /build/ball-1.5.0+git20180813.37fc53c/build/source/MOLMEC/AMBER/GAFFCESParserParser.C source/MOLMEC/AMBER/GAFFCESParserParser.y [ 4%] [FLEX][smartsParserLexer] Building scanner with flex 2.6.4 cd /build/ball-1.5.0+git20180813.37fc53c && /usr/bin/flex -PSmartsParser -o/build/ball-1.5.0+git20180813.37fc53c/build/source/STRUCTURE/smartsParserLexer.C source/STRUCTURE/smartsParserLexer.l [ 4%] [BISON][smartsParserParser] Building parser with bison 3.7.5 cd /build/ball-1.5.0+git20180813.37fc53c && /usr/bin/bison --defines=/build/ball-1.5.0+git20180813.37fc53c/build/source/STRUCTURE/smartsParserParser.h -pSmartsParser -d -o /build/ball-1.5.0+git20180813.37fc53c/build/source/STRUCTURE/smartsParserParser.C source/STRUCTURE/smartsParserParser.y source/STRUCTURE/smartsParserParser.y: warning: 26 shift/reduce conflicts [-Wconflicts-sr] source/STRUCTURE/smartsParserParser.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples [ 4%] [FLEX][smilesParserLexer] Building scanner with flex 2.6.4 cd /build/ball-1.5.0+git20180813.37fc53c && /usr/bin/flex -PSmilesParser -o/build/ball-1.5.0+git20180813.37fc53c/build/source/STRUCTURE/smilesParserLexer.C source/STRUCTURE/smilesParserLexer.l [ 4%] Automatic MOC for target BALL /usr/bin/cmake -E cmake_autogen /build/ball-1.5.0+git20180813.37fc53c/build/CMakeFiles/BALL_autogen.dir/AutogenInfo.json Release make[5]: Leaving directory '/build/ball-1.5.0+git20180813.37fc53c/build' [ 4%] Built target BALL_autogen make -f CMakeFiles/BALL.dir/build.make CMakeFiles/BALL.dir/depend make[5]: Entering directory '/build/ball-1.5.0+git20180813.37fc53c/build' cd /build/ball-1.5.0+git20180813.37fc53c/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/ball-1.5.0+git20180813.37fc53c /build/ball-1.5.0+git20180813.37fc53c /build/ball-1.5.0+git20180813.37fc53c/build /build/ball-1.5.0+git20180813.37fc53c/build /build/ball-1.5.0+git20180813.37fc53c/build/CMakeFiles/BALL.dir/DependInfo.cmake --color= Scanning dependencies of target BALL make[5]: Leaving directory '/build/ball-1.5.0+git20180813.37fc53c/build' make -f CMakeFiles/BALL.dir/build.make CMakeFiles/BALL.dir/build make[5]: Entering directory '/build/ball-1.5.0+git20180813.37fc53c/build' [ 4%] Building CXX object CMakeFiles/BALL.dir/BALL_autogen/mocs_compilation.cpp.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/BALL_autogen/mocs_compilation.cpp.o -c /build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/mocs_compilation.cpp [ 4%] Building CXX object 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/usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/CONCEPT/client.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/client.C [ 4%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/composite.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include 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-DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/CONCEPT/embeddable.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/embeddable.C [ 4%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/enumerator.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK 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/build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/enumerator.C [ 4%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/factory.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/CONCEPT/factory.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/factory.C [ 4%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/object.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/CONCEPT/object.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/object.C [ 4%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/objectCreator.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/CONCEPT/objectCreator.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/objectCreator.C [ 4%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/moleculeObjectCreator.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/CONCEPT/moleculeObjectCreator.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/objectCreator.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/moleculeObjectCreator.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/objectCreator.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/moleculeObjectCreator.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/objectCreator.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/moleculeObjectCreator.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C:10: /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C: In member function 'virtual BALL::Composite* BALL::MoleculeObjectCreator::convertObject(BALL::PersistentObject&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C:89:4: note: in expansion of macro 'BALL_FOREACH_BOND' 89 | BALL_FOREACH_BOND(*p, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/objectCreator.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/moleculeObjectCreator.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C:10: /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C: In member function 'virtual BALL::Composite* BALL::MoleculeObjectCreator::convertObject(BALL::PersistentObject&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C:89:4: note: in expansion of macro 'BALL_FOREACH_BOND' 89 | BALL_FOREACH_BOND(*p, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C:89:4: note: in expansion of macro 'BALL_FOREACH_BOND' 89 | BALL_FOREACH_BOND(*p, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/objectCreator.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/moleculeObjectCreator.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C:10: /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C: In member function 'virtual BALL::Composite* BALL::MoleculeObjectCreator::convertObject(BALL::PersistentObject&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C:89:4: note: in expansion of macro 'BALL_FOREACH_BOND' 89 | BALL_FOREACH_BOND(*p, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C:108:4: note: in expansion of macro 'BALL_FOREACH_BOND' 108 | BALL_FOREACH_BOND(*s, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/objectCreator.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/moleculeObjectCreator.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C:108:4: note: in expansion of macro 'BALL_FOREACH_BOND' 108 | BALL_FOREACH_BOND(*s, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ [ 4%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/persistenceManager.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/CONCEPT/persistenceManager.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/persistenceManager.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/persistenceManager.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/persistenceManager.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/persistenceManager.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/persistenceManager.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/persistenceManager.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/persistenceManager.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 4%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/preferencesObject.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/CONCEPT/preferencesObject.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/preferencesObject.C [ 4%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/processor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/CONCEPT/processor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/processor.C [ 4%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/property.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/CONCEPT/property.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/property.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/selectable.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/CONCEPT/selectable.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/selectable.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/textPersistenceManager.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/CONCEPT/textPersistenceManager.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/textPersistenceManager.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/timeStamp.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/CONCEPT/timeStamp.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/timeStamp.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/visitor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/CONCEPT/visitor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/visitor.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/molecularInformation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/CONCEPT/molecularInformation.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/molecularInformation.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/molecularInformation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/molecularInformation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/molecularInformation.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/molecularInformation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/molecularInformation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/molecularInformation.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/molecularInformation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/molecularInformation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/molecularInformation.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 9%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/XDRPersistenceManager.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/CONCEPT/XDRPersistenceManager.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/XDRPersistenceManager.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/constants.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/COMMON/constants.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/COMMON/constants.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/exception.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/COMMON/exception.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/COMMON/exception.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/hash.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/COMMON/hash.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/COMMON/hash.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/init.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/COMMON/init.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/COMMON/init.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/logStream.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/COMMON/logStream.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/COMMON/logStream.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/rtti.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/COMMON/rtti.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/COMMON/rtti.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/version.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/COMMON/version.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/COMMON/version.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/graphAlgorithms.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/graphAlgorithms.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/GRAPH/graphAlgorithms.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/molecularGraph.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/molecularGraph.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/GRAPH/molecularGraph.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/GRAPH/molecularGraph.C:4: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/GRAPH/molecularGraph.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/GRAPH/molecularGraph.C:4: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/GRAPH/molecularGraph.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/GRAPH/molecularGraph.C:4: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/GRAPH/molecularGraph.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 9%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/treeWidth.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/treeWidth.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/GRAPH/treeWidth.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/bitVector.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/DATATYPE/bitVector.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/bitVector.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/contourSurface.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/DATATYPE/contourSurface.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/contourSurface.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/hashGrid.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/DATATYPE/hashGrid.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/hashGrid.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/options.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/DATATYPE/options.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/options.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/regularExpression.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/DATATYPE/regularExpression.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/regularExpression.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/regularData1D.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/DATATYPE/regularData1D.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/regularData1D.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/regularData2D.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/DATATYPE/regularData2D.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/regularData2D.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/regularData3D.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/DATATYPE/regularData3D.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/regularData3D.C [ 14%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/string.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/DATATYPE/string.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/string.C [ 14%] Building CXX object CMakeFiles/BALL.dir/source/ENERGY/atomicContactEnergy.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/ENERGY/atomicContactEnergy.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/atomicContactEnergy.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/geometricProperties.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/atomicContactEnergy.C:16: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/atomicContactEnergy.C:12: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/geometricProperties.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/atomicContactEnergy.C:16: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/atomicContactEnergy.C:12: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/geometricProperties.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/atomicContactEnergy.C:16: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/atomicContactEnergy.C:12: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/forwardIterator.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashSet.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/file.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/atomicContactEnergy.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/baseIterator.h: In instantiation of 'BALL::BaseIterator& BALL::BaseIterator::operator=(const BALL::BaseIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/forwardIterator.h:63:68: required from 'BALL::ConstForwardIterator& BALL::ConstForwardIterator::operator=(const BALL::ConstForwardIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/forwardIterator.h:237:76: required from 'BALL::ForwardIterator& BALL::ForwardIterator::operator=(const BALL::ForwardIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]' /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/atomicContactEnergy.C:250:37: required from here /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/baseIterator.h:111:12: warning: implicitly-declared 'BALL::HashGridBox3::BoxIteratorTraits& BALL::HashGridBox3::BoxIteratorTraits::operator=(const BALL::HashGridBox3::BoxIteratorTraits&)' is deprecated [-Wdeprecated-copy] 111 | traits_ = iterator.traits_; | ~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/atomicContactEnergy.C:12: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:209:4: note: because 'BALL::HashGridBox3::BoxIteratorTraits' has user-provided 'BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3::BoxIteratorTraits&, bool) [with Item = BALL::ACEFastAtomType*]' 209 | BoxIteratorTraits(const BoxIteratorTraits& traits, bool /* deep */ = true) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h: In instantiation of 'BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::ACEFastAtomType*; BALL::Index = int]': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1516:17: required from 'bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::ACEFastAtomType*; BALL::Position = unsigned int]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:563:21: required from 'void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = BALL::ACEFastAtomType*; BALL::Position = unsigned int]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:206:13: required from 'BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = BALL::ACEFastAtomType*]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/baseIterator.h:190:23: required from 'BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/forwardIterator.h:128:67: required from 'BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/forwardIterator.h:298:20: required from 'BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/forwardIterator.h:309:19: required from 'static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:332:29: required from 'BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = BALL::ACEFastAtomType*; BALL::HashGridBox3::BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]' /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/atomicContactEnergy.C:250:37: required from here /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1726:46: warning: comparison of integer expressions of different signedness: 'int' and 'BALL::Size' {aka 'unsigned int'} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/ENERGY/composedEnergyProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/ENERGY/composedEnergyProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/composedEnergyProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/composedEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/composedEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/composedEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/composedEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/composedEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/composedEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/composedEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/composedEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/composedEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/composedEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/composedEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/composedEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/ENERGY/coulomb.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/ENERGY/coulomb.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/coulomb.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/coulomb.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/coulomb.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/coulomb.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/coulomb.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/coulomb.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/coulomb.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/coulomb.C:7: /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/coulomb.C: In function 'double BALL::calculateCoulomb(const BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:90:55: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 90 | for (first_atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/coulomb.C:23:3: note: in expansion of macro 'BALL_FOREACH_ATOM_PAIR' 23 | BALL_FOREACH_ATOM_PAIR(atoms, atom_it1, atom_it2) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/coulomb.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/coulomb.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:92:58: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 92 | for (second_atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/coulomb.C:23:3: note: in expansion of macro 'BALL_FOREACH_ATOM_PAIR' 23 | BALL_FOREACH_ATOM_PAIR(atoms, atom_it1, atom_it2) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/coulomb.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/ENERGY/distanceCoulomb.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/ENERGY/distanceCoulomb.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/distanceCoulomb.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/distanceCoulomb.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/distanceCoulomb.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/distanceCoulomb.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/distanceCoulomb.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/distanceCoulomb.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/distanceCoulomb.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/distanceCoulomb.C:8: /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/distanceCoulomb.C: In function 'double BALL::calculateDistanceCoulomb(const BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:90:55: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 90 | for (first_atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/distanceCoulomb.C:30:3: note: in expansion of macro 'BALL_FOREACH_ATOM_PAIR' 30 | BALL_FOREACH_ATOM_PAIR(atoms, atom_iterator1, atom_iterator2) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/distanceCoulomb.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/distanceCoulomb.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:92:58: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 92 | for (second_atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/distanceCoulomb.C:30:3: note: in expansion of macro 'BALL_FOREACH_ATOM_PAIR' 30 | BALL_FOREACH_ATOM_PAIR(atoms, atom_iterator1, atom_iterator2) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/distanceCoulomb.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/ENERGY/energyProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/ENERGY/energyProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/energyProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/energyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/energyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/energyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/energyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/energyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/ENERGY/energyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/amiraMeshFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/amiraMeshFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/amiraMeshFile.C [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/antechamberFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/antechamberFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/antechamberFile.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/antechamberFile.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/antechamberFile.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/antechamberFile.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/antechamberFile.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/antechamberFile.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/antechamberFile.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/antechamberFile.C:8: /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/antechamberFile.C: In member function 'virtual bool BALL::AntechamberFile::write(const BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/antechamberFile.C:133:3: note: in expansion of macro 'BALL_FOREACH_BOND' 133 | BALL_FOREACH_BOND(ac, at_it, bit) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/antechamberFile.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/antechamberFile.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/antechamberFile.C:133:3: note: in expansion of macro 'BALL_FOREACH_BOND' 133 | BALL_FOREACH_BOND(ac, at_it, bit) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/antechamberFile.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/antechamberFile.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/antechamberFile.C:8: /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/antechamberFile.C: In member function 'virtual bool BALL::AntechamberFile::write(const BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/antechamberFile.C:133:3: note: in expansion of macro 'BALL_FOREACH_BOND' 133 | BALL_FOREACH_BOND(ac, at_it, bit) | ^~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/bruker1DFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/bruker1DFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/bruker1DFile.C [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/bruker2DFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/bruker2DFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/bruker2DFile.C [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/commandlineParser.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/commandlineParser.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/commandlineParser.C In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/commandlineParser.h:4, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/commandlineParser.C:5: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void BALL::CommandlineParser::registerAdvancedParameters(BALL::Options&)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/dockResultFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/dockResultFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/flexibleMolecule.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/receptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/result.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C: In member function 'void BALL::DockResultFile::writeProtein(BALL::Protein*, QXmlStreamWriter&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:187:58: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 187 | for (residue_iterator = (residue_container).beginResidue(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:806:4: note: in expansion of macro 'BALL_FOREACH_RESIDUE' 806 | BALL_FOREACH_RESIDUE(*prot,ri) | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/flexibleMolecule.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/receptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/result.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C: In member function 'void BALL::DockResultFile::writeProtein(BALL::Protein*, QXmlStreamWriter&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:187:58: note: synthesized method 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)' first required here 187 | for (residue_iterator = (residue_container).beginResidue(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:806:4: note: in expansion of macro 'BALL_FOREACH_RESIDUE' 806 | BALL_FOREACH_RESIDUE(*prot,ri) | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/flexibleMolecule.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/receptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/result.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C: In member function 'void BALL::DockResultFile::writeResidue(BALL::Residue*, QXmlStreamWriter&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:820:4: note: in expansion of macro 'BALL_FOREACH_ATOM' 820 | BALL_FOREACH_ATOM(*res, pai) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/flexibleMolecule.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/receptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/result.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C: In member function 'void BALL::DockResultFile::writeResidue(BALL::Residue*, QXmlStreamWriter&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:820:4: note: in expansion of macro 'BALL_FOREACH_ATOM' 820 | BALL_FOREACH_ATOM(*res, pai) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C: In member function 'void BALL::DockResultFile::writeMolecule(BALL::Molecule*, QXmlStreamWriter&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:982:4: note: in expansion of macro 'BALL_FOREACH_ATOM' 982 | BALL_FOREACH_ATOM(*molecule, a_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:990:31: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 990 | a_it = molecule->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/flexibleMolecule.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/receptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/result.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:991:4: note: in expansion of macro 'BALL_FOREACH_ATOM' 991 | BALL_FOREACH_ATOM(*molecule, a_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/flexibleMolecule.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/receptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/result.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:1001:4: note: in expansion of macro 'BALL_FOREACH_BOND' 1001 | BALL_FOREACH_BOND(*molecule, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/flexibleMolecule.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/receptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/result.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:1001:4: note: in expansion of macro 'BALL_FOREACH_BOND' 1001 | BALL_FOREACH_BOND(*molecule, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/flexibleMolecule.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/receptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/result.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C: In member function 'void BALL::DockResultFile::writeMolecule(BALL::Molecule*, QXmlStreamWriter&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:1001:4: note: in expansion of macro 'BALL_FOREACH_BOND' 1001 | BALL_FOREACH_BOND(*molecule, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:1007:31: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 1007 | a_it = molecule->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/flexibleMolecule.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/receptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/result.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:1008:4: note: in expansion of macro 'BALL_FOREACH_ATOM' 1008 | BALL_FOREACH_ATOM(*molecule, a_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/dockResultFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/CCP4File.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/CCP4File.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/CCP4File.C [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/CIFFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/CIFFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/CIFFile.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/CIFFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/CIFFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/CIFFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/CIFFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/CIFFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/CIFFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/CIFFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h: In member function 'BALL::CIFFile::SaveFrame& BALL::CIFFile::SaveFrame::operator=(const BALL::CIFFile::SaveFrame&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:76:10: warning: implicitly-declared 'BALL::CIFFile::Item& BALL::CIFFile::Item::operator=(const BALL::CIFFile::Item&)' is deprecated [-Wdeprecated-copy] 76 | class SaveFrame | ^~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/CIFFile.C:134:2: note: because 'BALL::CIFFile::Item' has user-provided 'BALL::CIFFile::Item::Item(const BALL::CIFFile::Item&)' 134 | CIFFile::Item::Item(const Item& item) | ^~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/CIFFile.C: In constructor 'BALL::CIFFile::Datacontent::Datacontent(BALL::CIFFile::SaveFrame)': /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/CIFFile.C:379:15: note: synthesized method 'BALL::CIFFile::SaveFrame& BALL::CIFFile::SaveFrame::operator=(const BALL::CIFFile::SaveFrame&)' first required here 379 | saveframe = new_saveframe; | ^~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/CIFFile.C: In constructor 'BALL::CIFFile::Datacontent::Datacontent(BALL::CIFFile::Item)': /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/CIFFile.C:385:14: warning: implicitly-declared 'BALL::CIFFile::Item& BALL::CIFFile::Item::operator=(const BALL::CIFFile::Item&)' is deprecated [-Wdeprecated-copy] 385 | dataitem = new_item; | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/CIFFile.C:134:2: note: because 'BALL::CIFFile::Item' has user-provided 'BALL::CIFFile::Item::Item(const BALL::CIFFile::Item&)' 134 | CIFFile::Item::Item(const Item& item) | ^~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/DCDFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/DCDFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/DCDFile.C [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/DSN6File.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/DSN6File.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/DSN6File.C [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/GAMESSDatFile.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/GAMESSDatFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/GAMESSDatFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/GAMESSDatFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/GAMESSDatFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/GAMESSDatFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/GAMESSDatFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/GAMESSDatFile.C: In member function 'virtual bool BALL::GAMESSDatFile::write(const BALL::System&)': /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/GAMESSDatFile.C:88:32: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 88 | for (atIt = system.beginAtom(); +atIt; ++atIt) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/GAMESSDatFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/genericMolFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/genericMolFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/genericMolFile.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/genericMolFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/genericMolFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/genericMolFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/genericMolFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/genericMolFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/genericMolFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/HINFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/HINFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/HINFile.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/HINFile.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/simpleBox3.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/HINFile.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/HINFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/HINFile.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/simpleBox3.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/HINFile.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/HINFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/HINFile.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/simpleBox3.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/HINFile.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/HINFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/HINFile.C: In member function 'virtual bool BALL::HINFile::write(const BALL::System&)': /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/HINFile.C:153:35: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 153 | for (atom_it = system.beginAtom(); +atom_it; ++atom_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/simpleBox3.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/HINFile.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/HINFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/HINFile.C:377:35: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 377 | for (atom_it = system.beginAtom(); +atom_it; ++atom_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/simpleBox3.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/HINFile.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/HINFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/HMOFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/HMOFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/HMOFile.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/HMOFile.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/HMOFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/HMOFile.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/HMOFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/HMOFile.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/HMOFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/HMOFile.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/HMOFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/HMOFile.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/HMOFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/HMOFile.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/HMOFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/INIFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/INIFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/INIFile.C [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/JCAMPFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/JCAMPFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/JCAMPFile.C In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/rtti.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/macros.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h:18, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/file.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/lineBasedFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/JCAMPFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/JCAMPFile.C:6: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/10/bits/vector.tcc: In member function 'void BALL::JCAMPFile::read()': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/KCFFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/KCFFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/KCFFile.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/KCFFile.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/KCFFile.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/KCFFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/KCFFile.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/KCFFile.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/KCFFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/KCFFile.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/KCFFile.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/KCFFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/KCFFile.C: In member function 'virtual bool BALL::KCFFile::write(const BALL::Molecule&)': /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/KCFFile.C:91:32: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 91 | for (ai = molecule.beginAtom(); +ai; ++ai) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/KCFFile.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/KCFFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/lineBasedFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/lineBasedFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/lineBasedFile.C [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/MOLFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/MOLFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOLFile.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOLFile.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOLFile.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOLFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOLFile.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOLFile.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOLFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOLFile.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOLFile.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOLFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOLFile.C:11: /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOLFile.C: In member function 'virtual bool BALL::MOLFile::write(const BALL::Molecule&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOLFile.C:164:3: note: in expansion of macro 'BALL_FOREACH_BOND' 164 | BALL_FOREACH_BOND(molecule, it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOLFile.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOLFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOLFile.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOLFile.C:164:3: note: in expansion of macro 'BALL_FOREACH_BOND' 164 | BALL_FOREACH_BOND(molecule, it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOLFile.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOLFile.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOLFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOLFile.C:11: /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOLFile.C: In member function 'virtual bool BALL::MOLFile::write(const BALL::Molecule&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOLFile.C:164:3: note: in expansion of macro 'BALL_FOREACH_BOND' 164 | BALL_FOREACH_BOND(molecule, it, bond_it) | ^~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/molFileFactory.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/molFileFactory.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/molFileFactory.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/molFileFactory.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/molFileFactory.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/molFileFactory.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/molFileFactory.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/molFileFactory.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/molFileFactory.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/MOPACInputFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/MOPACInputFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOPACInputFile.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOPACInputFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOPACInputFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOPACInputFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOPACInputFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOPACInputFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOPACInputFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOPACInputFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOPACInputFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOPACInputFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOPACInputFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOPACInputFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOPACInputFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/MOPACOutputFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/MOPACOutputFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOPACOutputFile.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOPACOutputFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOPACOutputFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOPACOutputFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOPACOutputFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOPACOutputFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOPACOutputFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOPACOutputFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOPACOutputFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOPACOutputFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOPACOutputFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOPACOutputFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOPACOutputFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/SDFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/SDFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/SDFile.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/SDFile.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOLFile.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/SDFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/SDFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/SDFile.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOLFile.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/SDFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/SDFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/SDFile.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOLFile.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/SDFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/SDFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/MOL2File.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/MOL2File.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOL2File.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOL2File.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOL2File.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOL2File.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOL2File.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOL2File.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:15: /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C: In member function 'virtual bool BALL::MOL2File::write(const BALL::Molecule&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:127:3: note: in expansion of macro 'BALL_FOREACH_BOND' 127 | BALL_FOREACH_BOND(new_molecule, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOL2File.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:15: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:127:3: note: in expansion of macro 'BALL_FOREACH_BOND' 127 | BALL_FOREACH_BOND(new_molecule, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOL2File.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOL2File.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:15: /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C: In member function 'virtual bool BALL::MOL2File::write(const BALL::Molecule&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:127:3: note: in expansion of macro 'BALL_FOREACH_BOND' 127 | BALL_FOREACH_BOND(new_molecule, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:162:36: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 162 | atom_it = new_molecule.beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOL2File.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:15: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:212:4: note: in expansion of macro 'BALL_FOREACH_BOND' 212 | BALL_FOREACH_BOND(new_molecule, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOL2File.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:15: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:212:4: note: in expansion of macro 'BALL_FOREACH_BOND' 212 | BALL_FOREACH_BOND(new_molecule, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOL2File.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C: In member function 'bool BALL::MOL2File::containsAtomChilds_(BALL::AtomContainerConstIterator&)': /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:993:51: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 993 | for (children_it = frag_it->beginChildComposite(); +children_it; ++children_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOL2File.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/MOL2File.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::ChildCompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/NMRStarFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/NMRStarFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/NMRStarFile.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/NMRStarFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/NMRStarFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/NMRStarFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/NMRStarFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/NMRStarFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/NMRStarFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/NMRStarFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/NMRStarFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/NMRStarFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/NMRStarFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/NMRStarFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/NMRStarFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/NMRStarFile.C: In member function 'bool BALL::NMRStarFile::assignShifts_(BALL::NMRStarFile::BALLToBMRBMapper&)': /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/NMRStarFile.C:1204:77: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 1204 | r_it = const_cast(ball_to_bmrb_mapping.getChain())->beginResidue(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/NMRStarFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/NMRStarFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/NMRStarFile.C: In member function 'bool BALL::NMRStarFile::assignShifts_(BALL::NMRStarFile::BALLToBMRBMapper&)': /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/NMRStarFile.C:1204:77: note: synthesized method 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)' first required here 1204 | r_it = const_cast(ball_to_bmrb_mapping.getChain())->beginResidue(); | ^ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/NMRStarFile.C: In member function 'int BALL::NMRStarFile::valueToInt_(BALL::String)': /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/NMRStarFile.C:2277:24: warning: catching polymorphic type 'class BALL::Exception::InvalidFormat' by value [-Wcatch-value=] 2277 | } catch (Exception::InvalidFormat) { | ^~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/paramFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/paramFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/paramFile.C [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/parameters.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/parameters.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/parameters.C /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/parameters.C: In copy constructor 'BALL::Parameters::Parameters(const BALL::Parameters&)': /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/parameters.C:19:34: warning: implicitly-declared 'BALL::INIFile::INIFile(const BALL::INIFile&)' is deprecated [-Wdeprecated-copy] 19 | INI_file_(parameters.INI_file_) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameters.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/parameters.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/INIFile.h:378:18: note: because 'BALL::INIFile' has user-provided 'const BALL::INIFile& BALL::INIFile::operator=(const BALL::INIFile&)' 378 | const INIFile& operator = (const INIFile& file) | ^~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/parameterSection.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/parameterSection.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/parameterSection.C [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/PDBdefs.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/PDBdefs.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBdefs.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBdefs.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBdefs.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBdefs.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBdefs.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBdefs.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBdefs.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/PDBFileGeneral.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/PDBFileGeneral.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileGeneral.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileGeneral.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileGeneral.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileGeneral.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileGeneral.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileGeneral.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileGeneral.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileGeneral.C: In member function 'bool BALL::PDBFile::parseLine(const char*, BALL::Size, const char*, ...)': /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileGeneral.C:381:10: warning: 'char* strncpy(char*, const char*, size_t)' output truncated before terminating nul copying 4 bytes from a string of the same length [-Wstringop-truncation] 381 | strncpy(formats, "%.6s", 4); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/PDBFileDetails.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/PDBFileDetails.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileDetails.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileDetails.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileDetails.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileDetails.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileDetails.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileDetails.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileDetails.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileDetails.C: In member function 'void BALL::PDBFile::postprocessSheetsTurns_(BALL::PDBFile::QuadrupleList&, BALL::PDBFile::SecStructList&)': /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileDetails.C:195:58: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 195 | for (protein_res_it = current_protein_->beginResidue(); !protein_res_it.isEnd(); ++protein_res_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileDetails.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileDetails.C: In member function 'void BALL::PDBFile::postprocessSheetsTurns_(BALL::PDBFile::QuadrupleList&, BALL::PDBFile::SecStructList&)': /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileDetails.C:195:58: note: synthesized method 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)' first required here 195 | for (protein_res_it = current_protein_->beginResidue(); !protein_res_it.isEnd(); ++protein_res_it) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileDetails.C: In member function 'void BALL::PDBFile::postprocessRandomCoils_()': /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileDetails.C:287:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 287 | for (protein_res_it = chain_it->beginResidue(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileDetails.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileDetails.C: In static member function 'static void BALL::PDBFile::updateAdditionalAtomInfo_(const BALL::PDB::Structure::AtomEntry&, BALL::PDB::AdditionalAtomInfo&)': /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileDetails.C:1460:12: warning: 'char* strncpy(char*, const char*, size_t)' specified bound 4 equals destination size [-Wstringop-truncation] 1460 | strncpy(aai.residue_name, atom.residue->getName().c_str(), 4); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileDetails.C: In member function 'void BALL::PDBFile::writeCoordinateSection_(const BALL::PDB::Structure&, const BALL::PDBInfo&)': /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileDetails.C:1553:12: warning: 'char* strncpy(char*, const char*, size_t)' specified bound 4 equals destination size [-Wstringop-truncation] 1553 | strncpy(atom_info.residue_name, atom_info.current_residue->getName().c_str(), 4); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileDetails.C:9: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {BALL::PDB::Structure::NCSMatrix}; _Tp = BALL::PDB::Structure::NCSMatrix; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileDetails.C: In member function 'void BALL::PDBFile::writeSEQRESSection_(const std::vector >&)': /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileDetails.C:1785:11: warning: 'char* strncpy(char*, const char*, size_t)' output may be truncated copying 3 bytes from a string of length 3 [-Wstringop-truncation] 1785 | strncpy(sr.residue_name[res_counter++], seq, 3); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBFileDetails.C:9: /usr/include/c++/10/bits/vector.tcc: In static member function 'static void BALL::PDBFile::extractStructure_(const BALL::AtomContainer&, BALL::PDB::Structure&)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/PDBInfo.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/PDBInfo.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBInfo.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBInfo.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBInfo.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBRecords.h:16, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBInfo.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBInfo.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBInfo.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBInfo.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBRecords.h:16, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBInfo.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBInfo.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBInfo.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBInfo.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBRecords.h:16, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBInfo.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBInfo.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/PDBRecords.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/PDBRecords.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/PDBRecords.C [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/pubchemDownloader.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/pubchemDownloader.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/pubchemDownloader.C [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/resourceFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/resourceFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/resourceFile.C [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/SCWRLRotamerFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/SCWRLRotamerFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/SCWRLRotamerFile.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/fragmentDB.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/rotamerLibrary.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/SCWRLRotamerFile.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/fragmentDB.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/rotamerLibrary.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/SCWRLRotamerFile.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/fragmentDB.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/rotamerLibrary.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/SCWRLRotamerFile.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/fragmentDB.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/rotamerLibrary.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/SCWRLRotamerFile.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/fragmentDB.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/rotamerLibrary.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/SCWRLRotamerFile.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/fragmentDB.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/rotamerLibrary.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/SCWRLRotamerFile.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/trajectoryFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/trajectoryFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/trajectoryFile.C [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/trajectoryFileFactory.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/trajectoryFileFactory.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/trajectoryFileFactory.C /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/trajectoryFileFactory.C: In static member function 'static BALL::TrajectoryFile* BALL::TrajectoryFileFactory::detectFormat(const BALL::String&)': /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/trajectoryFileFactory.C:103:68: warning: unused parameter 'name' [-Wunused-parameter] 103 | TrajectoryFile* TrajectoryFileFactory::detectFormat(const String& name) | ~~~~~~~~~~~~~~^~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/TRRFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/TRRFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/TRRFile.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/TRRFile.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/snapShot.h:16, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/trajectoryFile.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/TRRFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/TRRFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/TRRFile.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/snapShot.h:16, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/trajectoryFile.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/TRRFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/TRRFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/TRRFile.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/snapShot.h:16, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/trajectoryFile.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/TRRFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/TRRFile.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/XYZFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/XYZFile.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/XYZFile.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/XYZFile.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/XYZFile.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/XYZFile.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/XYZFile.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/XYZFile.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/FORMAT/XYZFile.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/CIFParserParser.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/CIFParserParser.C.o -c /build/ball-1.5.0+git20180813.37fc53c/build/source/FORMAT/CIFParserParser.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from source/FORMAT/CIFParserParser.y:2: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from source/FORMAT/CIFParserParser.y:2: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from source/FORMAT/CIFParserParser.y:2: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from source/FORMAT/CIFParserParser.y:2: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from source/FORMAT/CIFParserParser.y:2: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from source/FORMAT/CIFParserParser.y:2: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/build/source/FORMAT/CIFParserParser.C: In function 'int CIFParserparse()': /build/ball-1.5.0+git20180813.37fc53c/build/source/FORMAT/CIFParserParser.C:1670:20: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1670 | yyerror (YY_("syntax error")); | ^~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/build/source/FORMAT/CIFParserParser.C:309:22: note: in definition of macro 'YY_' 309 | # define YY_(Msgid) Msgid | ^~~~~ /build/ball-1.5.0+git20180813.37fc53c/build/source/FORMAT/CIFParserParser.C:1781:16: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1781 | yyerror (YY_("memory exhausted")); | ^~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/build/source/FORMAT/CIFParserParser.C:309:22: note: in definition of macro 'YY_' 309 | # define YY_(Msgid) Msgid | ^~~~~ source/FORMAT/CIFParserParser.y:239:33: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] source/FORMAT/CIFParserParser.y:239:18: note: 'sprintf' output between 2 and 2551 bytes into a destination of size 2550 source/FORMAT/CIFParserParser.y:236:33: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] source/FORMAT/CIFParserParser.y:236:18: note: 'sprintf' output between 2 and 2551 bytes into a destination of size 2550 source/FORMAT/CIFParserParser.y:233:33: warning: '%s' directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] source/FORMAT/CIFParserParser.y:233:18: note: 'sprintf' output between 1 and 5099 bytes into a destination of size 2550 source/FORMAT/CIFParserParser.y:230:33: warning: '%s' directive writing up to 2549 bytes into a region of size between 0 and 2549 [-Wformat-overflow=] source/FORMAT/CIFParserParser.y:230:18: note: 'sprintf' output between 2 and 5100 bytes into a destination of size 2550 source/FORMAT/CIFParserParser.y:227:33: warning: '%s' directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] source/FORMAT/CIFParserParser.y:227:18: note: 'sprintf' output between 1 and 5099 bytes into a destination of size 2550 source/FORMAT/CIFParserParser.y:219:89: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] source/FORMAT/CIFParserParser.y:219:74: note: 'sprintf' output between 2 and 2551 bytes into a destination of size 2550 source/FORMAT/CIFParserParser.y:218:71: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] source/FORMAT/CIFParserParser.y:218:56: note: 'sprintf' output between 2 and 2551 bytes into a destination of size 2550 source/FORMAT/CIFParserParser.y:217:33: warning: '%s' directive writing up to 2549 bytes into a region of size between 0 and 2549 [-Wformat-overflow=] source/FORMAT/CIFParserParser.y:217:18: note: 'sprintf' output between 2 and 5100 bytes into a destination of size 2550 source/FORMAT/CIFParserParser.y:214:95: warning: '%s' directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] source/FORMAT/CIFParserParser.y:214:80: note: 'sprintf' output between 1 and 5099 bytes into a destination of size 2550 source/FORMAT/CIFParserParser.y:213:95: warning: '%s' directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] source/FORMAT/CIFParserParser.y:213:80: note: 'sprintf' output between 1 and 5099 bytes into a destination of size 2550 source/FORMAT/CIFParserParser.y:209:111: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] source/FORMAT/CIFParserParser.y:209:96: note: 'sprintf' output between 2 and 2551 bytes into a destination of size 2550 source/FORMAT/CIFParserParser.y:205:159: warning: '%s' directive writing up to 2549 bytes into a region of size between 0 and 2549 [-Wformat-overflow=] source/FORMAT/CIFParserParser.y:205:144: note: 'sprintf' output between 2 and 5100 bytes into a destination of size 2550 source/FORMAT/CIFParserParser.y:204:139: warning: '%s' directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] source/FORMAT/CIFParserParser.y:204:124: note: 'sprintf' output between 1 and 5099 bytes into a destination of size 2550 source/FORMAT/CIFParserParser.y:203:139: warning: '%s' directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] source/FORMAT/CIFParserParser.y:203:124: note: 'sprintf' output between 1 and 7648 bytes into a destination of size 2550 source/FORMAT/CIFParserParser.y:198:139: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] source/FORMAT/CIFParserParser.y:198:124: note: 'sprintf' output between 2 and 2551 bytes into a destination of size 2550 source/FORMAT/CIFParserParser.y:197:139: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] source/FORMAT/CIFParserParser.y:197:124: note: 'sprintf' output between 2 and 2551 bytes into a destination of size 2550 source/FORMAT/CIFParserParser.y:196:159: warning: '%s' directive writing up to 2549 bytes into a region of size between 0 and 2549 [-Wformat-overflow=] source/FORMAT/CIFParserParser.y:196:144: note: 'sprintf' output between 2 and 5100 bytes into a destination of size 2550 source/FORMAT/CIFParserParser.y:195:139: warning: '%s' directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] source/FORMAT/CIFParserParser.y:195:124: note: 'sprintf' output between 1 and 5099 bytes into a destination of size 2550 source/FORMAT/CIFParserParser.y:194:139: warning: '%s' directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] source/FORMAT/CIFParserParser.y:194:124: note: 'sprintf' output between 1 and 7648 bytes into a destination of size 2550 [ 23%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/CIFParserLexer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/CIFParserLexer.C.o -c /build/ball-1.5.0+git20180813.37fc53c/build/source/FORMAT/CIFParserLexer.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from source/FORMAT/CIFParserLexer.l:2: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from source/FORMAT/CIFParserLexer.l:2: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from source/FORMAT/CIFParserLexer.l:2: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from source/FORMAT/CIFParserLexer.l:2: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from source/FORMAT/CIFParserLexer.l:2: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h:17, from source/FORMAT/CIFParserLexer.l:2: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/build/source/FORMAT/CIFParserLexer.C: At global scope: /build/ball-1.5.0+git20180813.37fc53c/build/source/FORMAT/CIFParserLexer.C:2176:17: warning: 'void yyunput(int, char*)' defined but not used [-Wunused-function] 2176 | static void yyunput (int c, char * yy_bp ) | ^~~~~~~ source/FORMAT/CIFParserLexer.l: In function 'int CIFParserlex()': source/FORMAT/CIFParserLexer.l:223:10: warning: 'char* strncpy(char*, const char*, size_t)' output may be truncated copying 2550 bytes from a string of length 8191 [-Wstringop-truncation] source/FORMAT/CIFParserLexer.l:207:10: warning: 'char* strncpy(char*, const char*, size_t)' output may be truncated copying 2550 bytes from a string of length 8191 [-Wstringop-truncation] source/FORMAT/CIFParserLexer.l:200:10: warning: 'char* strncpy(char*, const char*, size_t)' output may be truncated copying 2550 bytes from a string of length 8191 [-Wstringop-truncation] source/FORMAT/CIFParserLexer.l:135:10: warning: 'char* strncpy(char*, const char*, size_t)' output may be truncated copying 2550 bytes from a string of length 8191 [-Wstringop-truncation] source/FORMAT/CIFParserLexer.l:117:10: warning: 'char* strncpy(char*, const char*, size_t)' output may be truncated copying 2550 bytes from a string of length 8191 [-Wstringop-truncation] source/FORMAT/CIFParserLexer.l:90:15: warning: 'char* strncpy(char*, const char*, size_t)' output may be truncated copying 2550 bytes from a string of length 8191 [-Wstringop-truncation] [ 23%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatParserParser.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatParserParser.C.o -c /build/ball-1.5.0+git20180813.37fc53c/build/source/FORMAT/GAMESSDatParserParser.C [ 23%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatParserLexer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatParserLexer.C.o -c /build/ball-1.5.0+git20180813.37fc53c/build/source/FORMAT/GAMESSDatParserLexer.C /build/ball-1.5.0+git20180813.37fc53c/build/source/FORMAT/GAMESSDatParserLexer.C:2637:24: warning: 'void yy_fatal_error(const char*)' defined but not used [-Wunused-function] 2637 | static void yynoreturn yy_fatal_error (const char* msg ) | ^~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/atom.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/atom.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atom.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atom.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atom.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atom.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atom.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atom.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atom.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/atomContainer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/atomContainer.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:6: /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C: In member function 'BALL::Size BALL::AtomContainer::countBonds() const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:230:3: note: in expansion of macro 'BALL_FOREACH_BOND' 230 | BALL_FOREACH_BOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:230:3: note: in expansion of macro 'BALL_FOREACH_BOND' 230 | BALL_FOREACH_BOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:6: /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C: In member function 'BALL::Size BALL::AtomContainer::countBonds() const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:230:3: note: in expansion of macro 'BALL_FOREACH_BOND' 230 | BALL_FOREACH_BOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C: In member function 'BALL::Size BALL::AtomContainer::countInterBonds() const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:124:49: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 124 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:244:3: note: in expansion of macro 'BALL_FOREACH_INTERBOND' 244 | BALL_FOREACH_INTERBOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:126:51: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 126 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:244:3: note: in expansion of macro 'BALL_FOREACH_INTERBOND' 244 | BALL_FOREACH_INTERBOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:6: /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C: In member function 'BALL::Size BALL::AtomContainer::countIntraBonds() const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:141:49: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 141 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:258:3: note: in expansion of macro 'BALL_FOREACH_INTRABOND' 258 | BALL_FOREACH_INTRABOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:143:51: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 143 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:258:3: note: in expansion of macro 'BALL_FOREACH_INTRABOND' 258 | BALL_FOREACH_INTRABOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:6: /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C: In member function 'bool BALL::AtomContainer::applyInterBond(BALL::UnaryProcessor&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:124:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 124 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:460:3: note: in expansion of macro 'BALL_FOREACH_INTERBOND' 460 | BALL_FOREACH_INTERBOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:6: /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C: In member function 'bool BALL::AtomContainer::applyInterBond(BALL::UnaryProcessor&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:124:49: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 124 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:460:3: note: in expansion of macro 'BALL_FOREACH_INTERBOND' 460 | BALL_FOREACH_INTERBOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:126:51: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 126 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:460:3: note: in expansion of macro 'BALL_FOREACH_INTERBOND' 460 | BALL_FOREACH_INTERBOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:6: /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C: In member function 'bool BALL::AtomContainer::applyInterBond(BALL::UnaryProcessor&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:126:51: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 126 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:460:3: note: in expansion of macro 'BALL_FOREACH_INTERBOND' 460 | BALL_FOREACH_INTERBOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C: In member function 'bool BALL::AtomContainer::applyIntraBond(BALL::UnaryProcessor&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:141:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 141 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:484:3: note: in expansion of macro 'BALL_FOREACH_INTRABOND' 484 | BALL_FOREACH_INTRABOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:143:51: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 143 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:484:3: note: in expansion of macro 'BALL_FOREACH_INTRABOND' 484 | BALL_FOREACH_INTRABOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/global.h: In instantiation of 'void BALL::cloneBonds(const AtomContainerType&, AtomContainerType&) [with AtomContainerType = BALL::AtomContainer]': /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:91:42: required from here /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/global.h:79:19: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 79 | for (bond_iter = atom_iter_a->beginBond(); bond_iter != atom_iter_a->endBond(); ++bond_iter) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/atomContainer.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/bond.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/bond.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/bond.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/bond.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/bond.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/bond.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/bond.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/bond.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/bond.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/chain.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/chain.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/chain.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chain.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/chain.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chain.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/chain.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chain.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/chain.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chain.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/chain.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chain.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/chain.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chain.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/chain.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expression.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/expression.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/expression.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/standardPredicates.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/expression.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionPredicate.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionTree.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionParser.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expression.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/expression.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/standardPredicates.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/expression.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionPredicate.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionTree.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionParser.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expression.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/expression.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/standardPredicates.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/expression.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionPredicate.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionTree.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionParser.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expression.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/expression.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expressionPredicate.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/expressionPredicate.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/expressionPredicate.C [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expressionTree.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/expressionTree.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/expressionTree.C [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expressionParser.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/expressionParser.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/expressionParser.C [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/extractors.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/extractors.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/extractors.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/extractors.C:13: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionPredicate.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionTree.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionParser.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expression.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/extractors.C:12: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/extractors.C:13: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionPredicate.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionTree.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionParser.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expression.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/extractors.C:12: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/extractors.C:13: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionPredicate.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionTree.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionParser.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expression.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/extractors.C:12: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/fragment.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/fragment.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/fragment.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/fragment.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/fragment.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/fragment.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/fragment.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/fragment.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/fragment.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/global.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/global.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/global.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/global.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/global.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/global.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/global.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/global.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/global.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/global.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/global.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/global.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/global.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/global.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/global.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/molecularInteractions.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/molecularInteractions.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/molecularInteractions.C [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/molecule.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/molecule.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/molecule.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/molecule.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/molecule.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/molecule.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/molecule.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/molecule.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/molecule.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/nucleicAcid.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/nucleicAcid.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/nucleicAcid.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/nucleicAcid.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/nucleicAcid.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/nucleicAcid.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/nucleicAcid.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/nucleicAcid.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/nucleicAcid.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/nucleicAcid.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/nucleicAcid.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/nucleicAcid.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/nucleicAcid.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/nucleicAcid.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/nucleicAcid.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/nucleotide.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/nucleotide.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/nucleotide.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/nucleotide.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/nucleotide.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/nucleotide.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/nucleotide.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/nucleotide.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/nucleotide.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/nucleotide.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/nucleotide.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/nucleotide.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/nucleotide.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/nucleotide.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/nucleotide.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/PDBAtom.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/PDBAtom.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/PDBAtom.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chain.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/PDBAtom.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/PDBAtom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/PDBAtom.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chain.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/PDBAtom.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/PDBAtom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/PDBAtom.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chain.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/PDBAtom.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/PDBAtom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/PDBAtom.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/predicate.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/predicate.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/predicate.C [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/protein.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/protein.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/protein.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chain.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chainIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/protein.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/protein.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chain.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chainIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/protein.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/protein.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chain.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chainIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/protein.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/protein.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chain.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chainIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/protein.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/protein.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chain.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chainIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/protein.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/protein.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chain.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chainIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/protein.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/protein.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/PTE.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/PTE.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/PTE.C [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/residue.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/residue.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/residue.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/residue.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/residue.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/residue.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/residue.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/residue.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/residue.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/residue.C: In member function 'BALL::Angle BALL::Residue::getTorsionPsi() const': /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/residue.C:135:25: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 135 | for (it = beginAtom(); +it; ++it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/residue.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/residue.C:143:31: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 143 | for (it = next->beginAtom(); +it; ++it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/residue.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/residue.C: In member function 'BALL::Angle BALL::Residue::getTorsionPhi() const': /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/residue.C:199:25: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 199 | for (it = beginAtom(); +it; ++it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/residue.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/residue.C:207:35: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 207 | for (it = previous->beginAtom(); +it; ++it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/residue.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/residue.C: In member function 'BALL::Angle BALL::Residue::getTorsionOmega() const': /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/residue.C:262:25: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 262 | for (it = beginAtom(); +it; ++it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/residue.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/residue.C:270:31: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 270 | for (it = next->beginAtom(); +it; ++it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/residue.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/secondaryStructure.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/secondaryStructure.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/secondaryStructure.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/secondaryStructure.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/secondaryStructure.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/secondaryStructure.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/secondaryStructure.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/secondaryStructure.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/secondaryStructure.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/selector.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/selector.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/selector.C [ 28%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/standardPredicates.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/standardPredicates.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/standardPredicates.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/standardPredicates.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/standardPredicates.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/standardPredicates.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/standardPredicates.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/standardPredicates.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/standardPredicates.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/standardPredicates.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/standardPredicates.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/standardPredicates.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/standardPredicates.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/standardPredicates.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/standardPredicates.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/system.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/system.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/system.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/system.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/system.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/system.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/system.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/system.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/KERNEL/system.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expressionParserParser.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/expressionParserParser.C.o -c /build/ball-1.5.0+git20180813.37fc53c/build/source/KERNEL/expressionParserParser.C source/KERNEL/expressionParserParser.y:11:2: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] source/KERNEL/expressionParserParser.y:126:2: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] [ 28%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expressionParserLexer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/KERNEL/expressionParserLexer.C.o -c /build/ball-1.5.0+git20180813.37fc53c/build/source/KERNEL/expressionParserLexer.C /build/ball-1.5.0+git20180813.37fc53c/build/source/KERNEL/expressionParserLexer.C:1845:24: warning: 'void yy_fatal_error(const char*)' defined but not used [-Wunused-function] 1845 | static void yynoreturn yy_fatal_error (const char* msg ) | ^~~~~~~~~~~~~~ [ 28%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/analyticalGeometry.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MATHS/analyticalGeometry.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MATHS/analyticalGeometry.C [ 28%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/angle.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MATHS/angle.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MATHS/angle.C [ 28%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/box3.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MATHS/box3.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MATHS/box3.C [ 28%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/circle3.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MATHS/circle3.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MATHS/circle3.C [ 28%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/cubicSpline1D.C.o /usr/bin/c++ 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/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MATHS/sphere3.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MATHS/sphere3.C [ 28%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/surface.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MATHS/surface.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MATHS/surface.C [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/vector2.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MATHS/vector2.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MATHS/vector2.C [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/vector3.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MATHS/vector3.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MATHS/vector3.C [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/vector4.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MATHS/vector4.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MATHS/vector4.C [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/parsedFunctionParser.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MATHS/parsedFunctionParser.C.o -c /build/ball-1.5.0+git20180813.37fc53c/build/source/MATHS/parsedFunctionParser.C [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/parsedFunctionLexer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MATHS/parsedFunctionLexer.C.o -c /build/ball-1.5.0+git20180813.37fc53c/build/source/MATHS/parsedFunctionLexer.C /build/ball-1.5.0+git20180813.37fc53c/build/source/MATHS/parsedFunctionLexer.C:1869:24: warning: 'void yy_fatal_error(const char*)' defined but not used [-Wunused-function] 1869 | static void yynoreturn yy_fatal_error (const char* msg ) | ^~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amber.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amber.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amber.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amber.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amber.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amber.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amber.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amber.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amber.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amber.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amber.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amber.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amber.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amber.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amber.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amber.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h: In member function 'void BALL::CosineTorsion::Values::set(const BALL::CosineTorsion::Values&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:105:28: warning: implicitly-declared 'BALL::CosineTorsion::SingleValues& BALL::CosineTorsion::SingleValues::operator=(const BALL::CosineTorsion::SingleValues&)' is deprecated [-Wdeprecated-copy] 105 | values[i] = v.values[i]; | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:42:4: note: because 'BALL::CosineTorsion::SingleValues' has user-provided 'BALL::CosineTorsion::SingleValues::SingleValues(const BALL::CosineTorsion::SingleValues&)' 42 | SingleValues(const SingleValues& v) | ^~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberBend.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberBend.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberBend.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberBend.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberBend.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberBend.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberBend.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberBend.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberBend.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberBend.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberBend.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberBend.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberBend.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberBend.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberBend.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberBend.C: In member function 'virtual bool BALL::AmberBend::setup()': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberBend.C:84:37: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 84 | for (it2 = (*atom_it)->beginBond(); +it2 ; ++it2) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberBend.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberBend.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberBend.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberBend.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberBend.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberBend.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberBend.C: In member function 'virtual bool BALL::AmberBend::setup()': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberBend.C:84:37: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 84 | for (it2 = (*atom_it)->beginBond(); +it2 ; ++it2) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberBend.C:87:16: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 87 | for (it1 = it2, ++it1; +it1 ; ++it1) | ^~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberBend.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberBend.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberNonBonded.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberNonBonded.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberNonBonded.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberNonBonded.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/lennardJones.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberNonBonded.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberNonBonded.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/lennardJones.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberNonBonded.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberNonBonded.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/lennardJones.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberNonBonded.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberNonBonded.C: In member function 'const BALL::AmberNonBonded& BALL::AmberNonBonded::operator=(const BALL::AmberNonBonded&)': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberNonBonded.C:127:33: warning: implicitly-declared 'BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)' is deprecated [-Wdeprecated-copy] 127 | ForceFieldComponent::operator = (anb); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberNonBonded.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:61:3: note: because 'BALL::ForceFieldComponent' has user-provided 'BALL::ForceFieldComponent::ForceFieldComponent(const BALL::ForceFieldComponent&)' 61 | ForceFieldComponent(const ForceFieldComponent& force_field_component); | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h: In member function 'BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:34:20: warning: implicitly-declared 'BALL::ScoringComponent& BALL::ScoringComponent::operator=(const BALL::ScoringComponent&)' is deprecated [-Wdeprecated-copy] 34 | class BALL_EXPORT ForceFieldComponent : public ScoringComponent | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberNonBonded.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:26:4: note: because 'BALL::ScoringComponent' has user-provided 'BALL::ScoringComponent::ScoringComponent(const BALL::ScoringComponent&)' 26 | ScoringComponent(const ScoringComponent& sc); | ^~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberNonBonded.C: In member function 'const BALL::AmberNonBonded& BALL::AmberNonBonded::operator=(const BALL::AmberNonBonded&)': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberNonBonded.C:127:33: note: synthesized method 'BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)' first required here 127 | ForceFieldComponent::operator = (anb); | ^ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberNonBonded.C:127:39: warning: implicitly-declared 'BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)' is deprecated [-Wdeprecated-copy] 127 | ForceFieldComponent::operator = (anb); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberNonBonded.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:61:3: note: because 'BALL::ForceFieldComponent' has user-provided 'BALL::ForceFieldComponent::ForceFieldComponent(const BALL::ForceFieldComponent&)' 61 | ForceFieldComponent(const ForceFieldComponent& force_field_component); | ^~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberStretch.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberStretch.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberStretch.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberStretch.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberStretch.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberStretch.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberStretch.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberStretch.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberStretch.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberStretch.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberStretch.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberStretch.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberStretch.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberStretch.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberStretch.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberTorsion.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberTorsion.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h: In member function 'void BALL::CosineTorsion::Values::set(const BALL::CosineTorsion::Values&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:105:28: warning: implicitly-declared 'BALL::CosineTorsion::SingleValues& BALL::CosineTorsion::SingleValues::operator=(const BALL::CosineTorsion::SingleValues&)' is deprecated [-Wdeprecated-copy] 105 | values[i] = v.values[i]; | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:42:4: note: because 'BALL::CosineTorsion::SingleValues' has user-provided 'BALL::CosineTorsion::SingleValues::SingleValues(const BALL::CosineTorsion::SingleValues&)' 42 | SingleValues(const SingleValues& v) | ^~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberTorsion.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberTorsion.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberTorsion.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C: In member function 'virtual bool BALL::AmberTorsion::setup()': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:115:37: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 115 | for (it1 = (*atom_it)->beginBond(); +it1 ; ++ it1) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/atomTypes.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/atomTypes.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C: In member function 'virtual bool BALL::AmberTorsion::setup()': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:115:37: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 115 | for (it1 = (*atom_it)->beginBond(); +it1 ; ++ it1) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:124:39: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 124 | for (it2 = (*atom_it)->beginBond(); +it2 ; ++it2) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/atomTypes.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:139:70: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 139 | for (it3 = const_cast(it1->getSecondAtom())->beginBond(); +it3 ; ++it3) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/atomTypes.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:186:41: warning: implicitly-declared 'BALL::CosineTorsion::SingleValues& BALL::CosineTorsion::SingleValues::operator=(const BALL::CosineTorsion::SingleValues&)' is deprecated [-Wdeprecated-copy] 186 | tmp.values = values.values[j]; | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:42:4: note: because 'BALL::CosineTorsion::SingleValues' has user-provided 'BALL::CosineTorsion::SingleValues::SingleValues(const BALL::CosineTorsion::SingleValues&)' 42 | SingleValues(const SingleValues& v) | ^~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:296:39: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 296 | for (it1 = (*atom_it)->beginBond(); +it1 ; ++ it1) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/atomTypes.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:301:18: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 301 | for (it2 = it1, ++it2; +it2 ; it2++) | ^~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/atomTypes.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:305:19: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 305 | for (it3 = it2, ++it3; +it3 ; it3++) | ^~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/atomTypes.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:362:40: warning: implicitly-declared 'BALL::CosineTorsion::SingleValues& BALL::CosineTorsion::SingleValues::operator=(const BALL::CosineTorsion::SingleValues&)' is deprecated [-Wdeprecated-copy] 362 | tmp.values = values.values[j]; | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/amberTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:42:4: note: because 'BALL::CosineTorsion::SingleValues' has user-provided 'BALL::CosineTorsion::SingleValues::SingleValues(const BALL::CosineTorsion::SingleValues&)' 42 | SingleValues(const SingleValues& v) | ^~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFTypeProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFTypeProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFTypeProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/GAFFTypeProcessor.h:29, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFTypeProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/GAFFTypeProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFTypeProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/GAFFTypeProcessor.h:29, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFTypeProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/GAFFTypeProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFTypeProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/GAFFTypeProcessor.h:29, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFTypeProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/GAFFTypeProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFTypeProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFTypeProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFTypeProcessor.C: In member function 'void BALL::GAFFTypeProcessor::annotateBondTypes_()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFTypeProcessor.C:289:3: note: in expansion of macro 'BALL_FOREACH_BOND' 289 | BALL_FOREACH_BOND(*current_molecule_, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/GAFFTypeProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFTypeProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFTypeProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFTypeProcessor.C: In member function 'void BALL::GAFFTypeProcessor::annotateBondTypes_()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFTypeProcessor.C:289:3: note: in expansion of macro 'BALL_FOREACH_BOND' 289 | BALL_FOREACH_BOND(*current_molecule_, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFTypeProcessor.C:289:3: note: in expansion of macro 'BALL_FOREACH_BOND' 289 | BALL_FOREACH_BOND(*current_molecule_, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/GAFFCESParser.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/GAFFTypeProcessor.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFTypeProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/GAFFTypeProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFTypeProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/GAFFCESParser.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/GAFFTypeProcessor.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFTypeProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFTypeProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFTypeProcessor.C: In member function 'void BALL::GAFFTypeProcessor::annotateBondTypes_()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFTypeProcessor.C:289:3: note: in expansion of macro 'BALL_FOREACH_BOND' 289 | BALL_FOREACH_BOND(*current_molecule_, a_it, b_it) | ^~~~~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParser.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParser.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFCESParser.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFCESParser.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/GAFFCESParser.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFCESParser.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFCESParser.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/GAFFCESParser.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFCESParser.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFCESParser.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/GAFFCESParser.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFCESParser.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFCESParser.C: In member function 'bool BALL::GAFFCESParser::APSMatcher::hasBond_(BALL::Atom*, BALL::Atom*, int, int)': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFCESParser.C:89:34: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 89 | for (bond_it = atom->beginBond(); +bond_it; ++bond_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/GAFFCESParser.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFCESParser.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/GAFFCESParser.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFCESParser.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFCESParser.C: In member function 'bool BALL::GAFFCESParser::APSMatcher::hasBond_(BALL::Atom*, BALL::Atom*, int, int)': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/AMBER/GAFFCESParser.C:89:34: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 89 | for (bond_it = atom->beginBond(); +bond_it; ++bond_it) | ^ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParserParser.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParserParser.C.o -c /build/ball-1.5.0+git20180813.37fc53c/build/source/MOLMEC/AMBER/GAFFCESParserParser.C [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParserLexer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParserLexer.C.o -c /build/ball-1.5.0+git20180813.37fc53c/build/source/MOLMEC/AMBER/GAFFCESParserLexer.C /build/ball-1.5.0+git20180813.37fc53c/build/source/MOLMEC/AMBER/GAFFCESParserLexer.C:1996:24: warning: 'void yy_fatal_error(const char*)' defined but not used [-Wunused-function] 1996 | static void yynoreturn yy_fatal_error (const char* msg ) | ^~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmm.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmm.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmm.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmm.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmm.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmm.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmm.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmm.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmm.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmm.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmm.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmm.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmm.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmm.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmm.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmm.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h: In member function 'void BALL::CosineTorsion::Values::set(const BALL::CosineTorsion::Values&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:105:28: warning: implicitly-declared 'BALL::CosineTorsion::SingleValues& BALL::CosineTorsion::SingleValues::operator=(const BALL::CosineTorsion::SingleValues&)' is deprecated [-Wdeprecated-copy] 105 | values[i] = v.values[i]; | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:42:4: note: because 'BALL::CosineTorsion::SingleValues' has user-provided 'BALL::CosineTorsion::SingleValues::SingleValues(const BALL::CosineTorsion::SingleValues&)' 42 | SingleValues(const SingleValues& v) | ^~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmBend.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmBend.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmBend.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmBend.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmBend.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmBend.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmBend.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmBend.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmBend.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmBend.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmBend.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmBend.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmBend.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmBend.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmBend.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmBend.C: In member function 'virtual bool BALL::CharmmBend::setup()': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmBend.C:83:37: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 83 | for (it2 = (*atom_it)->beginBond(); +it2 ; ++it2) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmBend.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmBend.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmBend.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmBend.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmBend.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmBend.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmBend.C: In member function 'virtual bool BALL::CharmmBend::setup()': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmBend.C:83:37: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 83 | for (it2 = (*atom_it)->beginBond(); +it2 ; ++it2) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmBend.C:86:16: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 86 | for (it1 = it2, ++it1; +it1 ; ++it1 ) | ^~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmBend.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmBend.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmImproperTorsion.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmImproperTorsion.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmImproperTorsion.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:23, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmImproperTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/quadraticImproperTorsion.h:12, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmImproperTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:23, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmImproperTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/quadraticImproperTorsion.h:12, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmImproperTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:23, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmImproperTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/quadraticImproperTorsion.h:12, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmImproperTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmImproperTorsion.C: In member function 'virtual bool BALL::CharmmImproperTorsion::setup()': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmImproperTorsion.C:173:40: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 173 | for (atom_it = next_it->beginAtom(); +atom_it; ++atom_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/quadraticImproperTorsion.h:12, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmImproperTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmImproperTorsion.C: In member function 'virtual bool BALL::CharmmImproperTorsion::setup()': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmImproperTorsion.C:173:40: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 173 | for (atom_it = next_it->beginAtom(); +atom_it; ++atom_it) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmImproperTorsion.C:202:45: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 202 | for (atom_it = last_residue->beginAtom(); +atom_it; ++atom_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/quadraticImproperTorsion.h:12, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmImproperTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmImproperTorsion.C:229:39: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 229 | for (atom_it = res_it->beginAtom(); (cys_res != 0) && +atom_it; ++atom_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/quadraticImproperTorsion.h:12, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmImproperTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmImproperTorsion.C:258:46: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | for (atom_it = last_residue->beginAtom(); +atom_it; ++atom_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/quadraticImproperTorsion.h:12, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmImproperTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmNonBonded.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmNonBonded.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmNonBonded.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:29, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmNonBonded.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/lennardJones.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmNonBonded.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:29, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmNonBonded.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/lennardJones.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmNonBonded.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:29, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmNonBonded.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/lennardJones.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmNonBonded.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmNonBonded.C: In member function 'const BALL::CharmmNonBonded& BALL::CharmmNonBonded::operator=(const BALL::CharmmNonBonded&)': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmNonBonded.C:137:33: warning: implicitly-declared 'BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)' is deprecated [-Wdeprecated-copy] 137 | ForceFieldComponent::operator = (charmm_non_bonded); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:29, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmNonBonded.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:61:3: note: because 'BALL::ForceFieldComponent' has user-provided 'BALL::ForceFieldComponent::ForceFieldComponent(const BALL::ForceFieldComponent&)' 61 | ForceFieldComponent(const ForceFieldComponent& force_field_component); | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h: In member function 'BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:34:20: warning: implicitly-declared 'BALL::ScoringComponent& BALL::ScoringComponent::operator=(const BALL::ScoringComponent&)' is deprecated [-Wdeprecated-copy] 34 | class BALL_EXPORT ForceFieldComponent : public ScoringComponent | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:29, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmNonBonded.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:26:4: note: because 'BALL::ScoringComponent' has user-provided 'BALL::ScoringComponent::ScoringComponent(const BALL::ScoringComponent&)' 26 | ScoringComponent(const ScoringComponent& sc); | ^~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmNonBonded.C: In member function 'const BALL::CharmmNonBonded& BALL::CharmmNonBonded::operator=(const BALL::CharmmNonBonded&)': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmNonBonded.C:137:33: note: synthesized method 'BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)' first required here 137 | ForceFieldComponent::operator = (charmm_non_bonded); | ^ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmNonBonded.C:137:53: warning: implicitly-declared 'BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)' is deprecated [-Wdeprecated-copy] 137 | ForceFieldComponent::operator = (charmm_non_bonded); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:29, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmNonBonded.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:61:3: note: because 'BALL::ForceFieldComponent' has user-provided 'BALL::ForceFieldComponent::ForceFieldComponent(const BALL::ForceFieldComponent&)' 61 | ForceFieldComponent(const ForceFieldComponent& force_field_component); | ^~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmStretch.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmStretch.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmStretch.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmStretch.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmStretch.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmStretch.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmStretch.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmStretch.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmStretch.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmStretch.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmStretch.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmStretch.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmStretch.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmStretch.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmStretch.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmStretch.C: In member function 'virtual bool BALL::CharmmStretch::setup()': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmStretch.C:71:47: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 71 | for (bond_iterator = (*atom_it)->beginBond(); +bond_iterator; ++bond_iterator) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmStretch.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmStretch.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmStretch.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmStretch.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmStretch.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmStretch.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmStretch.C: In member function 'virtual bool BALL::CharmmStretch::setup()': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmStretch.C:71:47: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 71 | for (bond_iterator = (*atom_it)->beginBond(); +bond_iterator; ++bond_iterator) | ^ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmTorsion.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmTorsion.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h: In member function 'void BALL::CosineTorsion::Values::set(const BALL::CosineTorsion::Values&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:105:28: warning: implicitly-declared 'BALL::CosineTorsion::SingleValues& BALL::CosineTorsion::SingleValues::operator=(const BALL::CosineTorsion::SingleValues&)' is deprecated [-Wdeprecated-copy] 105 | values[i] = v.values[i]; | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:42:4: note: because 'BALL::CosineTorsion::SingleValues' has user-provided 'BALL::CosineTorsion::SingleValues::SingleValues(const BALL::CosineTorsion::SingleValues&)' 42 | SingleValues(const SingleValues& v) | ^~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:23, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:23, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:23, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C: In member function 'virtual bool BALL::CharmmTorsion::setup()': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C:131:37: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 131 | for (it1 = (*atom_it)->beginBond(); +it1 ; ++ it1) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/atomTypes.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/atomTypes.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C: In member function 'virtual bool BALL::CharmmTorsion::setup()': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C:131:37: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 131 | for (it1 = (*atom_it)->beginBond(); +it1 ; ++ it1) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C:140:39: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 140 | for (it2 = (*atom_it)->beginBond(); +it2 ; ++it2) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/atomTypes.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C:155:70: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 155 | for (it3 = const_cast(it1->getSecondAtom())->beginBond(); +it3 ; ++it3) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/atomTypes.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C:198:48: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 198 | for (res_it = chain->beginResidue(); +res_it; last_res = &*res_it, ++res_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C: In member function 'virtual bool BALL::CharmmTorsion::setup()': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C:198:48: note: synthesized method 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)' first required here 198 | for (res_it = chain->beginResidue(); +res_it; last_res = &*res_it, ++res_it) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C:304:41: warning: implicitly-declared 'BALL::CosineTorsion::SingleValues& BALL::CosineTorsion::SingleValues::operator=(const BALL::CosineTorsion::SingleValues&)' is deprecated [-Wdeprecated-copy] 304 | tmp.values = values.values[j]; | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/CHARMM/charmmTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:42:4: note: because 'BALL::CosineTorsion::SingleValues' has user-provided 'BALL::CosineTorsion::SingleValues::SingleValues(const BALL::CosineTorsion::SingleValues&)' 42 | SingleValues(const SingleValues& v) | ^~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/assignTypes.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/assignTypes.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/assignTypes.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/assignTypes.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/atomTypes.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/assignTypes.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/assignTypes.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/assignTypes.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/atomTypes.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/assignTypes.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/assignTypes.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/assignTypes.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/atomTypes.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/assignTypes.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/assignTypes.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/atomVector.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/atomVector.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/atomVector.C [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/bendComponent.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/bendComponent.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/bendComponent.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/bendComponent.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/bendComponent.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/bendComponent.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/bendComponent.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/bendComponent.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/bendComponent.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/chargeRuleProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/chargeRuleProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/chargeRuleProcessor.C [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/forceField.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/forceField.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/forceField.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/forceField.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/forceField.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/forceField.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/forceField.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/forceField.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/forceField.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/forceField.C: In member function 'void BALL::ForceField::collectAtoms_(const BALL::System&)': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/forceField.C:326:36: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 326 | for (atom_it = system.beginAtom(); +atom_it; ++atom_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/forceField.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/forceFieldComponent.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/forceFieldComponent.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/forceFieldComponent.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/forceFieldComponent.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/forceFieldComponent.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/forceFieldComponent.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/forceFieldComponent.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/forceFieldComponent.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/forceFieldComponent.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/forceFieldComponent.C: In copy constructor 'BALL::ForceFieldComponent::ForceFieldComponent(const BALL::ForceFieldComponent&)': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/forceFieldComponent.C:34:2: warning: base class 'class BALL::ScoringComponent' should be explicitly initialized in the copy constructor [-Wextra] 34 | ForceFieldComponent::ForceFieldComponent(const ForceFieldComponent& force_field_component) | ^~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/gradient.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/gradient.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/gradient.C [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/periodicBoundary.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/periodicBoundary.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/periodicBoundary.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/periodicBoundary.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/periodicBoundary.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/periodicBoundary.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/periodicBoundary.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/periodicBoundary.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/periodicBoundary.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/periodicBoundary.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/periodicBoundary.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/periodicBoundary.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:28, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/periodicBoundary.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h: In instantiation of 'BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = const BALL::Atom*; BALL::Index = int]': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1667:20: required from 'void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = const BALL::Atom*; std::ostream = std::basic_ostream; BALL::Size = unsigned int]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1625:7: required from here /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1726:46: warning: comparison of integer expressions of different signedness: 'int' and 'BALL::Size' {aka 'unsigned int'} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/radiusRuleProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/radiusRuleProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/radiusRuleProcessor.C [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/ruleEvaluator.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/ruleEvaluator.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/ruleEvaluator.C [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/ruleProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/ruleProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/ruleProcessor.C [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/snapShot.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/snapShot.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/snapShot.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/snapShot.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/snapShot.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/snapShot.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/snapShot.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/snapShot.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/snapShot.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/snapShot.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/snapShot.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/snapShot.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/snapShotManager.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/snapShotManager.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/snapShotManager.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/snapShotManager.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/snapShot.h:16, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/snapShotManager.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/snapShotManager.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/snapShotManager.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/snapShot.h:16, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/snapShotManager.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/snapShotManager.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/snapShotManager.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/snapShot.h:16, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/snapShotManager.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/snapShotManager.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/rtti.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/macros.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h:18, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/PTE.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/snapShotManager.C:7: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BALL::SnapShot&}; _Tp = BALL::SnapShot; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {BALL::SnapShot}; _Tp = BALL::SnapShot; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/rtti.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/macros.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h:18, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/PTE.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/snapShotManager.C:7: /usr/include/c++/10/bits/stl_vector.h: In member function 'bool BALL::SnapShotManager::readFromFile()': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/rtti.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/macros.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h:18, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/PTE.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/snapShotManager.C:7: /usr/include/c++/10/bits/vector.tcc: In member function 'virtual void BALL::SnapShotManager::takeSnapShot()': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/support.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/support.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/support.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:20, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/support.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/simpleBox3.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/support.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:20, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/support.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/simpleBox3.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/support.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:20, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/support.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/simpleBox3.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/support.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/support.C: In function 'BALL::Size BALL::MolmecSupport::addNonOverlappingMolecules(BALL::System&, const BALL::HashGrid3&, const BALL::System&, const SimpleBox3&, double)': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/support.C:496:38: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 496 | for (atom_it = mol_it->beginAtom(); +atom_it; ++atom_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/simpleBox3.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/support.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/support.C: In function 'void BALL::MolmecSupport::adaptWaterBox(BALL::System&, const SimpleBox3&)': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/support.C:652:33: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 652 | atom_it = mol_it->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/simpleBox3.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/support.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/support.C: In function 'void BALL::MolmecSupport::adaptWaterBox(BALL::System&, const SimpleBox3&)': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/support.C:652:33: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 652 | atom_it = mol_it->beginAtom(); | ^ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/support.C:701:39: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 701 | for (atom_it = mol_it->beginAtom(); +atom_it; ++atom_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/simpleBox3.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/support.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:28, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/support.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h: In instantiation of 'BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1516:17: required from 'bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::Atom*; BALL::Position = unsigned int]' /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/support.C:234:39: required from here /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1726:46: warning: comparison of integer expressions of different signedness: 'int' and 'BALL::Size' {aka 'unsigned int'} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/forwardIterator.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashSet.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/simpleBox3.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/support.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/baseIterator.h: In instantiation of 'BALL::BaseIterator& BALL::BaseIterator::operator=(const BALL::BaseIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/forwardIterator.h:63:68: required from 'BALL::ConstForwardIterator& BALL::ConstForwardIterator::operator=(const BALL::ConstForwardIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]' /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/support.C:450:36: required from here /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/baseIterator.h:111:12: warning: implicitly-declared 'BALL::HashGridBox3::BoxIteratorTraits& BALL::HashGridBox3::BoxIteratorTraits::operator=(const BALL::HashGridBox3::BoxIteratorTraits&)' is deprecated [-Wdeprecated-copy] 111 | traits_ = iterator.traits_; | ~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:28, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/support.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:209:4: note: because 'BALL::HashGridBox3::BoxIteratorTraits' has user-provided 'BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3::BoxIteratorTraits&, bool) [with Item = const BALL::Atom*]' 209 | BoxIteratorTraits(const BoxIteratorTraits& traits, bool /* deep */ = true) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h: In instantiation of 'BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = const BALL::Atom*; BALL::Index = int]': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1516:17: required from 'bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = const BALL::Atom*; BALL::Position = unsigned int]' /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/support.C:503:62: required from here /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1726:46: warning: comparison of integer expressions of different signedness: 'int' and 'BALL::Size' {aka 'unsigned int'} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/stretchComponent.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/stretchComponent.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/stretchComponent.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/stretchComponent.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/stretchComponent.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/stretchComponent.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/stretchComponent.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/stretchComponent.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/stretchComponent.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/typenameRuleProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/typenameRuleProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/typenameRuleProcessor.C [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/typeRuleProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/typeRuleProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/COMMON/typeRuleProcessor.C [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/energyMinimizer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/energyMinimizer.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/energyMinimizer.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/energyMinimizer.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/energyMinimizer.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/energyMinimizer.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/energyMinimizer.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/energyMinimizer.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/energyMinimizer.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/lineSearch.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/lineSearch.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/lineSearch.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/lineSearch.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/lineSearch.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/lineSearch.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/lineSearch.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/lineSearch.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/lineSearch.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/steepestDescent.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/steepestDescent.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/steepestDescent.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/steepestDescent.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/steepestDescent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/steepestDescent.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/steepestDescent.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/steepestDescent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/steepestDescent.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/steepestDescent.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/steepestDescent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/steepestDescent.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/strangLBFGS.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/strangLBFGS.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/strangLBFGS.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/strangLBFGS.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/strangLBFGS.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/strangLBFGS.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/strangLBFGS.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/strangLBFGS.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/strangLBFGS.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/strangLBFGS.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/strangLBFGS.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/strangLBFGS.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/shiftedLVMM.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/shiftedLVMM.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/shiftedLVMM.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/shiftedLVMM.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/shiftedLVMM.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/shiftedLVMM.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/shiftedLVMM.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/shiftedLVMM.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/shiftedLVMM.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/shiftedLVMM.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/shiftedLVMM.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/shiftedLVMM.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/conjugateGradient.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/conjugateGradient.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/conjugateGradient.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/conjugateGradient.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/conjugateGradient.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/conjugateGradient.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/conjugateGradient.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/conjugateGradient.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/conjugateGradient.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/conjugateGradient.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/conjugateGradient.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MINIMIZATION/conjugateGradient.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/molecularDynamics.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/molecularDynamics.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MDSIMULATION/molecularDynamics.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MDSIMULATION/molecularDynamics.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h:18, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MDSIMULATION/molecularDynamics.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MDSIMULATION/molecularDynamics.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h:18, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MDSIMULATION/molecularDynamics.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MDSIMULATION/molecularDynamics.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h:18, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MDSIMULATION/molecularDynamics.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/microCanonicalMD.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/microCanonicalMD.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MDSIMULATION/microCanonicalMD.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MDSIMULATION/microCanonicalMD.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h:18, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MDSIMULATION/microCanonicalMD.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MDSIMULATION/microCanonicalMD.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MDSIMULATION/microCanonicalMD.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h:18, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MDSIMULATION/microCanonicalMD.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MDSIMULATION/microCanonicalMD.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MDSIMULATION/microCanonicalMD.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h:18, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MDSIMULATION/microCanonicalMD.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MDSIMULATION/microCanonicalMD.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MDSIMULATION/microCanonicalMD.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MDSIMULATION/microCanonicalMD.C:7: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BALL::MicroCanonicalMD::AuxFactors&}; _Tp = BALL::MicroCanonicalMD::AuxFactors; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MDSIMULATION/microCanonicalMD.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MDSIMULATION/microCanonicalMD.C:7: /usr/include/c++/10/bits/stl_vector.h: In member function 'void BALL::MicroCanonicalMD::calculateFactors()': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/canonicalMD.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/canonicalMD.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MDSIMULATION/canonicalMD.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MDSIMULATION/canonicalMD.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h:18, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MDSIMULATION/canonicalMD.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MDSIMULATION/canonicalMD.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MDSIMULATION/canonicalMD.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h:18, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MDSIMULATION/canonicalMD.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MDSIMULATION/canonicalMD.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MDSIMULATION/canonicalMD.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h:18, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MDSIMULATION/canonicalMD.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MDSIMULATION/canonicalMD.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/path.h:22, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:3: note: in expansion of macro 'BALL_CREATE' 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/path.h:22, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:34: note: because 'BALL::MMFF94StretchParameters' has user-provided 'const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)' 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/path.h:22, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:31: note: because 'BALL::MMFF94BendParameters' has user-provided 'const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)' 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/path.h:22, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:38: note: because 'BALL::MMFF94StretchBendParameters' has user-provided 'const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)' 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/path.h:22, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:34: note: because 'BALL::MMFF94TorsionParameters' has user-provided 'const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)' 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/path.h:22, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:32: note: because 'BALL::MMFF94PlaneParameters' has user-provided 'const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)' 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/path.h:22, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:30: note: because 'BALL::MMFF94VDWParameters' has user-provided 'const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)' 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/path.h:22, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:29: note: because 'BALL::MMFF94ESParameters' has user-provided 'const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)' 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/path.h:22, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94StretchBend.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94StretchBend.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:3: note: in expansion of macro 'BALL_CREATE' 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:34: note: because 'BALL::MMFF94StretchParameters' has user-provided 'const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)' 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:31: note: because 'BALL::MMFF94BendParameters' has user-provided 'const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)' 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:38: note: because 'BALL::MMFF94StretchBendParameters' has user-provided 'const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)' 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:34: note: because 'BALL::MMFF94TorsionParameters' has user-provided 'const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)' 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:32: note: because 'BALL::MMFF94PlaneParameters' has user-provided 'const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)' 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:30: note: because 'BALL::MMFF94VDWParameters' has user-provided 'const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)' 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:29: note: because 'BALL::MMFF94ESParameters' has user-provided 'const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)' 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C: In member function 'bool BALL::MMFF94StretchBend::setupBends_()': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:189:37: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 189 | for (it2 = (*atom_it)->beginBond(); +it2 ; ++it2) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C: In member function 'bool BALL::MMFF94StretchBend::setupBends_()': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:189:37: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 189 | for (it2 = (*atom_it)->beginBond(); +it2 ; ++it2) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:193:16: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 193 | for (it1 = it2, ++it1; +it1 ; ++it1) | ^~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BALL::MMFF94StretchBend::Bend&}; _Tp = BALL::MMFF94StretchBend::Bend; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BALL::MMFF94StretchBend::Stretch&}; _Tp = BALL::MMFF94StretchBend::Stretch; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BALL::MMFF94StretchBend::StretchBend&}; _Tp = BALL::MMFF94StretchBend::StretchBend; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /usr/include/c++/10/bits/stl_vector.h: In member function 'bool BALL::MMFF94StretchBend::setupBends_()': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In member function 'bool BALL::MMFF94StretchBend::setupStretches_()': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In member function 'bool BALL::MMFF94StretchBend::setupStretchBends_()': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Torsion.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Torsion.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:3: note: in expansion of macro 'BALL_CREATE' 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:34: note: because 'BALL::MMFF94StretchParameters' has user-provided 'const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)' 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:31: note: because 'BALL::MMFF94BendParameters' has user-provided 'const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)' 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:38: note: because 'BALL::MMFF94StretchBendParameters' has user-provided 'const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)' 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:34: note: because 'BALL::MMFF94TorsionParameters' has user-provided 'const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)' 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:32: note: because 'BALL::MMFF94PlaneParameters' has user-provided 'const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)' 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:30: note: because 'BALL::MMFF94VDWParameters' has user-provided 'const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)' 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:29: note: because 'BALL::MMFF94ESParameters' has user-provided 'const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)' 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C: In member function 'virtual bool BALL::MMFF94Torsion::setup()': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:144:37: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 144 | for (it1 = (*atom_it)->beginBond(); +it1 ; ++ it1) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C: In member function 'virtual bool BALL::MMFF94Torsion::setup()': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:144:37: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 144 | for (it1 = (*atom_it)->beginBond(); +it1 ; ++ it1) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:153:38: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 153 | for (it2 = (*atom_it)->beginBond(); +it2 ; ++it2) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:163:34: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 163 | for (it3 = atom3->beginBond(); +it3 ; ++it3) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BALL::MMFF94Torsion::Torsion&}; _Tp = BALL::MMFF94Torsion::Torsion; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /usr/include/c++/10/bits/stl_vector.h: In member function 'virtual bool BALL::MMFF94Torsion::setup()': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Parameters.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Parameters.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:3: note: in expansion of macro 'BALL_CREATE' 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:34: note: because 'BALL::MMFF94StretchParameters' has user-provided 'const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)' 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:31: note: because 'BALL::MMFF94BendParameters' has user-provided 'const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)' 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:38: note: because 'BALL::MMFF94StretchBendParameters' has user-provided 'const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)' 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:34: note: because 'BALL::MMFF94TorsionParameters' has user-provided 'const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)' 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:32: note: because 'BALL::MMFF94PlaneParameters' has user-provided 'const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)' 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:30: note: because 'BALL::MMFF94VDWParameters' has user-provided 'const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)' 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:29: note: because 'BALL::MMFF94ESParameters' has user-provided 'const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)' 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:10: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Parameters.C:9: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'virtual bool BALL::MMFF94TorsionParameters::setup_(const std::vector >&)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:3: note: in expansion of macro 'BALL_CREATE' 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:34: note: because 'BALL::MMFF94StretchParameters' has user-provided 'const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)' 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:31: note: because 'BALL::MMFF94BendParameters' has user-provided 'const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)' 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:38: note: because 'BALL::MMFF94StretchBendParameters' has user-provided 'const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)' 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:34: note: because 'BALL::MMFF94TorsionParameters' has user-provided 'const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)' 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:32: note: because 'BALL::MMFF94PlaneParameters' has user-provided 'const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)' 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:30: note: because 'BALL::MMFF94VDWParameters' has user-provided 'const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)' 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:29: note: because 'BALL::MMFF94ESParameters' has user-provided 'const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)' 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C: In member function 'virtual bool BALL::MMFF94OutOfPlaneBend::setup()': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:130:41: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 130 | for (bond_it = (*atom_it)->beginBond(); +bond_it; ++bond_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C: In member function 'virtual bool BALL::MMFF94OutOfPlaneBend::setup()': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:130:41: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 130 | for (bond_it = (*atom_it)->beginBond(); +bond_it; ++bond_it) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:140:42: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 140 | for (bond_it = central_atom.beginBond(); +bond_it; ++bond_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BALL::MMFF94OutOfPlaneBend::OutOfPlaneBend&}; _Tp = BALL::MMFF94OutOfPlaneBend::OutOfPlaneBend; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /usr/include/c++/10/bits/stl_vector.h: In member function 'virtual bool BALL::MMFF94OutOfPlaneBend::setup()': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Processors.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Processors.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:3: note: in expansion of macro 'BALL_CREATE' 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:34: note: because 'BALL::MMFF94StretchParameters' has user-provided 'const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)' 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:31: note: because 'BALL::MMFF94BendParameters' has user-provided 'const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)' 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:38: note: because 'BALL::MMFF94StretchBendParameters' has user-provided 'const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)' 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:34: note: because 'BALL::MMFF94TorsionParameters' has user-provided 'const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)' 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:32: note: because 'BALL::MMFF94PlaneParameters' has user-provided 'const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)' 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:30: note: because 'BALL::MMFF94VDWParameters' has user-provided 'const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)' 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:29: note: because 'BALL::MMFF94ESParameters' has user-provided 'const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)' 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:23, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:23, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:23, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:23, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:23, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:23, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C: In member function 'virtual void BALL::MMFF94AtomTyper::assignTo(BALL::System&)': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:439:20: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 439 | ait = s.beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:23, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C: In member function 'virtual void BALL::MMFF94AtomTyper::assignTo(BALL::System&)': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94Processors.C:439:20: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 439 | ait = s.beginAtom(); | ^ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94NonBonded.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94NonBonded.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:3: note: in expansion of macro 'BALL_CREATE' 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:34: note: because 'BALL::MMFF94StretchParameters' has user-provided 'const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)' 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:31: note: because 'BALL::MMFF94BendParameters' has user-provided 'const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)' 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:38: note: because 'BALL::MMFF94StretchBendParameters' has user-provided 'const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)' 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:34: note: because 'BALL::MMFF94TorsionParameters' has user-provided 'const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)' 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:32: note: because 'BALL::MMFF94PlaneParameters' has user-provided 'const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)' 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:30: note: because 'BALL::MMFF94VDWParameters' has user-provided 'const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)' 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:29: note: because 'BALL::MMFF94ESParameters' has user-provided 'const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)' 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C: In member function 'const BALL::MMFF94NonBonded& BALL::MMFF94NonBonded::operator=(const BALL::MMFF94NonBonded&)': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:103:33: warning: implicitly-declared 'BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)' is deprecated [-Wdeprecated-copy] 103 | ForceFieldComponent::operator = (anb); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:61:3: note: because 'BALL::ForceFieldComponent' has user-provided 'BALL::ForceFieldComponent::ForceFieldComponent(const BALL::ForceFieldComponent&)' 61 | ForceFieldComponent(const ForceFieldComponent& force_field_component); | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h: In member function 'BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:34:20: warning: implicitly-declared 'BALL::ScoringComponent& BALL::ScoringComponent::operator=(const BALL::ScoringComponent&)' is deprecated [-Wdeprecated-copy] 34 | class BALL_EXPORT ForceFieldComponent : public ScoringComponent | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:26:4: note: because 'BALL::ScoringComponent' has user-provided 'BALL::ScoringComponent::ScoringComponent(const BALL::ScoringComponent&)' 26 | ScoringComponent(const ScoringComponent& sc); | ^~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C: In member function 'const BALL::MMFF94NonBonded& BALL::MMFF94NonBonded::operator=(const BALL::MMFF94NonBonded&)': /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:103:33: note: synthesized method 'BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)' first required here 103 | ForceFieldComponent::operator = (anb); | ^ /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:103:39: warning: implicitly-declared 'BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)' is deprecated [-Wdeprecated-copy] 103 | ForceFieldComponent::operator = (anb); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:61:3: note: because 'BALL::ForceFieldComponent' has user-provided 'BALL::ForceFieldComponent::ForceFieldComponent(const BALL::ForceFieldComponent&)' 61 | ForceFieldComponent(const ForceFieldComponent& force_field_component); | ^~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/atomTypes.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/atomTypes.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/PARAMETER/atomTypes.C [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/charmmEEF1.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/charmmEEF1.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/PARAMETER/charmmEEF1.C [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/cosineTorsion.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/cosineTorsion.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/PARAMETER/cosineTorsion.C In file included from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/PARAMETER/cosineTorsion.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h: In member function 'void BALL::CosineTorsion::Values::set(const BALL::CosineTorsion::Values&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:105:28: warning: implicitly-declared 'BALL::CosineTorsion::SingleValues& BALL::CosineTorsion::SingleValues::operator=(const BALL::CosineTorsion::SingleValues&)' is deprecated [-Wdeprecated-copy] 105 | values[i] = v.values[i]; | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:42:4: note: because 'BALL::CosineTorsion::SingleValues' has user-provided 'BALL::CosineTorsion::SingleValues::SingleValues(const BALL::CosineTorsion::SingleValues&)' 42 | SingleValues(const SingleValues& v) | ^~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/forceFieldParameters.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/forceFieldParameters.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/PARAMETER/forceFieldParameters.C [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/lennardJones.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/lennardJones.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/PARAMETER/lennardJones.C [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/potential1210.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/potential1210.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/PARAMETER/potential1210.C [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticAngleBend.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticAngleBend.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/PARAMETER/quadraticAngleBend.C [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticBondStretch.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticBondStretch.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/PARAMETER/quadraticBondStretch.C [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticImproperTorsion.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticImproperTorsion.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/PARAMETER/quadraticImproperTorsion.C [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/residueTorsions.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/residueTorsions.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/PARAMETER/residueTorsions.C [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/templates.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/templates.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/PARAMETER/templates.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/templates.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/PARAMETER/templates.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/templates.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/PARAMETER/templates.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/templates.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/PARAMETER/templates.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/templates.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/PARAMETER/templates.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/templates.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/PARAMETER/templates.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/templates.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/MOLMEC/PARAMETER/templates.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/NMR/anisotropyShiftProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/NMR/anisotropyShiftProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/NMR/anisotropyShiftProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/anisotropyShiftProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/anisotropyShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/anisotropyShiftProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/anisotropyShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/anisotropyShiftProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/anisotropyShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/anisotropyShiftProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/anisotropyShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/anisotropyShiftProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/anisotropyShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/anisotropyShiftProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/anisotropyShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/NMR/clearShiftProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/NMR/clearShiftProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/NMR/clearShiftProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/clearShiftProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/clearShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/clearShiftProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/clearShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/clearShiftProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/clearShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/clearShiftProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/clearShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/clearShiftProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/clearShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/clearShiftProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/clearShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/NMR/EFShiftProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/NMR/EFShiftProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/NMR/EFShiftProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/EFShiftProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/EFShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/EFShiftProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/EFShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/EFShiftProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/EFShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/EFShiftProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/EFShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/EFShiftProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/EFShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/EFShiftProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/EFShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/NMR/empiricalHSShiftProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/NMR/empiricalHSShiftProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/empiricalHSShiftProcessor.h: In member function 'BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_& BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_::operator=(const BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/empiricalHSShiftProcessor.h:282:9: warning: implicitly-declared 'BALL::CubicSpline2D& BALL::CubicSpline2D::operator=(const BALL::CubicSpline2D&)' is deprecated [-Wdeprecated-copy] 282 | class ShiftHyperSurface_ | ^~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/empiricalHSShiftProcessor.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/cubicSpline2D.h:163:4: note: because 'BALL::CubicSpline2D' has user-provided 'BALL::CubicSpline2D::CubicSpline2D(const BALL::CubicSpline2D&)' 163 | CubicSpline2D(const CubicSpline2D& cs2D); | ^~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C: In member function 'virtual void BALL::EmpiricalHSShiftProcessor::init()': /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:205:40: note: synthesized method 'BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_& BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_::operator=(const BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_&)' first required here 205 | hypersurfaces_[atom_type][tuple]= shs; | ^~~ /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C: In member function 'float BALL::EmpiricalHSShiftProcessor::PropertiesForShift_::getChiAngle_(BALL::Residue*)': /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:475:30: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 475 | r_it = residue->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C: In member function 'float BALL::EmpiricalHSShiftProcessor::PropertiesForShift_::getChiAngle_(BALL::Residue*)': /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:475:30: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 475 | r_it = residue->beginAtom(); | ^ /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:488:30: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 488 | r_it = residue->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:506:30: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 506 | r_it = residue->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:519:30: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 519 | r_it = residue->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:532:30: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 532 | r_it = residue->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:545:30: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 545 | r_it = residue->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C: In member function 'float BALL::EmpiricalHSShiftProcessor::PropertiesForShift_::getChi2Angle_(BALL::Residue*)': /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:654:30: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 654 | r_it = residue->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:667:30: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 667 | r_it = residue->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:681:30: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 681 | r_it = residue->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:694:30: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 694 | r_it = residue->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:707:30: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 707 | r_it = residue->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:721:30: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 721 | r_it = residue->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:738:30: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 738 | r_it = residue->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:755:30: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 755 | r_it = residue->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C: In constructor 'BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_::ShiftHyperSurface_(BALL::String, BALL::String, BALL::String, BALL::String, int)': /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:1641:28: warning: implicitly-declared 'BALL::CubicSpline1D& BALL::CubicSpline1D::operator=(const BALL::CubicSpline1D&)' is deprecated [-Wdeprecated-copy] 1641 | s1d_[first_property_] = s; | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/cubicSpline2D.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/empiricalHSShiftProcessor.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/cubicSpline1D.h:124:4: note: because 'BALL::CubicSpline1D' has user-provided 'BALL::CubicSpline1D::CubicSpline1D(const BALL::CubicSpline1D&)' 124 | CubicSpline1D(const CubicSpline1D& cs1D); | ^~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:1679:56: warning: implicitly-declared 'BALL::CubicSpline2D& BALL::CubicSpline2D::operator=(const BALL::CubicSpline2D&)' is deprecated [-Wdeprecated-copy] 1679 | s2d_ = CubicSpline2D(x_axis, y_axis, sample_values_); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/empiricalHSShiftProcessor.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/cubicSpline2D.h:163:4: note: because 'BALL::CubicSpline2D' has user-provided 'BALL::CubicSpline2D::CubicSpline2D(const BALL::CubicSpline2D&)' 163 | CubicSpline2D(const CubicSpline2D& cs2D); | ^~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:1732:32: warning: implicitly-declared 'BALL::CubicSpline1D& BALL::CubicSpline1D::operator=(const BALL::CubicSpline1D&)' is deprecated [-Wdeprecated-copy] 1732 | s1d_[y_axis_values_[i]] = s; | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/cubicSpline2D.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/empiricalHSShiftProcessor.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/cubicSpline1D.h:124:4: note: because 'BALL::CubicSpline1D' has user-provided 'BALL::CubicSpline1D::CubicSpline1D(const BALL::CubicSpline1D&)' 124 | CubicSpline1D(const CubicSpline1D& cs1D); | ^~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:1760:32: warning: implicitly-declared 'BALL::CubicSpline1D& BALL::CubicSpline1D::operator=(const BALL::CubicSpline1D&)' is deprecated [-Wdeprecated-copy] 1760 | s1d_[y_axis_values_[i]] = s; | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/cubicSpline2D.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/empiricalHSShiftProcessor.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/empiricalHSShiftProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/cubicSpline1D.h:124:4: note: because 'BALL::CubicSpline1D' has user-provided 'BALL::CubicSpline1D::CubicSpline1D(const BALL::CubicSpline1D&)' 124 | CubicSpline1D(const CubicSpline1D& cs1D); | ^~~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/NMR/experiment.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/NMR/experiment.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/NMR/experiment.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/experiment.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/experiment.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/peak.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/peakList.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/experiment.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/experiment.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/experiment.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/experiment.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/peak.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/peakList.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/experiment.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/experiment.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/experiment.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/experiment.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/peak.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/peakList.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/experiment.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/experiment.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/NMR/HBondShiftProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/NMR/HBondShiftProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/NMR/HBondShiftProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/HBondShiftProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/HBondShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/HBondShiftProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/HBondShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/HBondShiftProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/HBondShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/HBondShiftProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/HBondShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/HBondShiftProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/HBondShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/HBondShiftProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/HBondShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/NMR/HBondShiftProcessor.C: In member function 'virtual bool BALL::HBondShiftProcessor::finish()': /build/ball-1.5.0+git20180813.37fc53c/source/NMR/HBondShiftProcessor.C:234:42: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 234 | for (bi = acceptors_[a]->beginBond(); +bi; ++bi) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/HBondShiftProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/HBondShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/HBondShiftProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/HBondShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/HBondShiftProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/HBondShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/NMR/HBondShiftProcessor.C: In member function 'virtual bool BALL::HBondShiftProcessor::finish()': /build/ball-1.5.0+git20180813.37fc53c/source/NMR/HBondShiftProcessor.C:234:42: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 234 | for (bi = acceptors_[a]->beginBond(); +bi; ++bi) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/NMR/HBondShiftProcessor.C:242:39: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 242 | for (bi = donors_[d]->beginBond(); +bi; ++bi) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/HBondShiftProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/HBondShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/NMR/haighMallionShiftProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/NMR/haighMallionShiftProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/NMR/haighMallionShiftProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/haighMallionShiftProcessor.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/haighMallionShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/haighMallionShiftProcessor.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/haighMallionShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/haighMallionShiftProcessor.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/haighMallionShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/haighMallionShiftProcessor.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/haighMallionShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/haighMallionShiftProcessor.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/haighMallionShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/haighMallionShiftProcessor.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/haighMallionShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/NMR/createSpectrumProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/NMR/createSpectrumProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/NMR/createSpectrumProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/createSpectrumProcessor.h:35, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/createSpectrumProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/peak.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/createSpectrumProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/createSpectrumProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/createSpectrumProcessor.h:35, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/createSpectrumProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/peak.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/createSpectrumProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/createSpectrumProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/createSpectrumProcessor.h:35, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/createSpectrumProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/peak.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/createSpectrumProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/createSpectrumProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/NMR/peak.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/NMR/peak.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/NMR/peak.C [ 47%] Building CXX object CMakeFiles/BALL.dir/source/NMR/peakList.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/NMR/peakList.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/NMR/peakList.C [ 47%] Building CXX object CMakeFiles/BALL.dir/source/NMR/shiftModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/NMR/shiftModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/NMR/shiftModel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModel.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/shiftModel.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModel.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/shiftModel.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModel.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/shiftModel.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModel.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/shiftModel.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModel.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/shiftModel.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModel.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/shiftModel.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/NMR/shiftModule.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/NMR/shiftModule.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/NMR/shiftModule.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/shiftModule.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/shiftModule.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/shiftModule.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/shiftModule.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/shiftModule.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/shiftModule.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/NMR/spectrum.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/NMR/spectrum.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/NMR/spectrum.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/spectrum.h:335, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/spectrum.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/spectrum.iC: In constructor 'BALL::Spectrum::Spectrum(const std::vector&, const PositionType&, const PositionType&, const PositionType&) [with DataT = BALL::TRegularData1D; PeakT = BALL::Peak; PositionT = float; BALL::Spectrum::PositionType = float]': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/spectrum.iC:20:31: warning: catching polymorphic type 'class BALL::Exception::OutOfGrid' by value [-Wcatch-value=] 20 | catch (Exception::OutOfGrid e) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/spectrum.h:335, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/spectrum.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/spectrum.iC: In constructor 'BALL::Spectrum::Spectrum(const std::vector&, const PositionType&, const PositionType&, const PositionType&) [with DataT = BALL::TRegularData2D; PeakT = BALL::Peak >; PositionT = BALL::TVector2; BALL::Spectrum::PositionType = BALL::TVector2]': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/spectrum.iC:46:31: warning: catching polymorphic type 'class BALL::Exception::OutOfGrid' by value [-Wcatch-value=] 46 | catch (Exception::OutOfGrid e) | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/spectrum.iC: In member function 'double BALL::Spectrum::difference(const BALL::Spectrum&) const [with DataT = BALL::TRegularData1D; PeakT = BALL::Peak; PositionT = float]': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/spectrum.iC:135:32: warning: catching polymorphic type 'class BALL::Exception::OutOfGrid' by value [-Wcatch-value=] 135 | catch (Exception::OutOfGrid e) | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/spectrum.iC: In member function 'double BALL::Spectrum::difference(const BALL::Spectrum&) const [with DataT = BALL::TRegularData2D; PeakT = BALL::Peak >; PositionT = BALL::TVector2]': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/spectrum.iC:177:32: warning: catching polymorphic type 'class BALL::Exception::OutOfGrid' by value [-Wcatch-value=] 177 | catch (Exception::OutOfGrid e) | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/spectrum.iC: In member function 'double BALL::Spectrum::getFourierDifference(const BALL::Spectrum&, float, float) [with DataT = BALL::TRegularData1D; PeakT = BALL::Peak; PositionT = float]': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/spectrum.iC:752:101: warning: unused parameter 'other_spectrum' [-Wunused-parameter] 752 | double Spectrum::getFourierDifference(const Spectrum& other_spectrum, float min_freq, float max_freq) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/spectrum.iC:752:123: warning: unused parameter 'min_freq' [-Wunused-parameter] 752 | double Spectrum::getFourierDifference(const Spectrum& other_spectrum, float min_freq, float max_freq) | ~~~~~~^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/spectrum.iC:752:139: warning: unused parameter 'max_freq' [-Wunused-parameter] 752 | double Spectrum::getFourierDifference(const Spectrum& other_spectrum, float min_freq, float max_freq) | ~~~~~~^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/spectrum.iC: In member function 'double BALL::Spectrum::getFourierDifference(const BALL::Spectrum&, float, float) [with DataT = BALL::TRegularData2D; PeakT = BALL::Peak >; PositionT = BALL::TVector2]': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/spectrum.iC:827:101: warning: unused parameter 'other_spectrum' [-Wunused-parameter] 827 | double Spectrum::getFourierDifference(const Spectrum& other_spectrum, float min_freq, float max_freq) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/spectrum.iC:827:123: warning: unused parameter 'min_freq' [-Wunused-parameter] 827 | double Spectrum::getFourierDifference(const Spectrum& other_spectrum, float min_freq, float max_freq) | ~~~~~~^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/spectrum.iC:827:139: warning: unused parameter 'max_freq' [-Wunused-parameter] 827 | double Spectrum::getFourierDifference(const Spectrum& other_spectrum, float min_freq, float max_freq) | ~~~~~~^~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/NMR/johnsonBoveyShiftProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/NMR/johnsonBoveyShiftProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/NMR/johnsonBoveyShiftProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/johnsonBoveyShiftProcessor.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/johnsonBoveyShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionPredicate.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionTree.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionParser.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expression.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/johnsonBoveyShiftProcessor.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/johnsonBoveyShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/johnsonBoveyShiftProcessor.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/johnsonBoveyShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionPredicate.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionTree.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionParser.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expression.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/johnsonBoveyShiftProcessor.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/johnsonBoveyShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/johnsonBoveyShiftProcessor.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/johnsonBoveyShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionPredicate.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionTree.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionParser.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expression.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/johnsonBoveyShiftProcessor.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/johnsonBoveyShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/NMR/randomCoilShiftProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/NMR/randomCoilShiftProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/NMR/randomCoilShiftProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/randomCoilShiftProcessor.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/randomCoilShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/randomCoilShiftProcessor.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/randomCoilShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/randomCoilShiftProcessor.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/randomCoilShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/randomCoilShiftProcessor.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/randomCoilShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/randomCoilShiftProcessor.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/randomCoilShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/randomCoilShiftProcessor.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/NMR/randomCoilShiftProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/PLUGIN/BALLPlugin.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/PLUGIN/BALLPlugin.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/PLUGIN/BALLPlugin.C [ 47%] Building CXX object CMakeFiles/BALL.dir/source/PLUGIN/pluginManager.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/PLUGIN/pluginManager.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/PLUGIN/pluginManager.C [ 47%] Building CXX object CMakeFiles/BALL.dir/source/PLUGIN/pluginHandler.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/PLUGIN/pluginHandler.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/PLUGIN/pluginHandler.C [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/aromaticityProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/aromaticityProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/aromaticityProcessor.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/aromaticityProcessor.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/aromaticityProcessor.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/aromaticityProcessor.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/aromaticityProcessor.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/aromaticityProcessor.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C:10: /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C: In member function 'void BALL::AromaticityProcessor::aromatize(const std::vector >&, BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C:660:3: note: in expansion of macro 'BALL_FOREACH_BOND' 660 | BALL_FOREACH_BOND(ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/aromaticityProcessor.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C:10: /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C: In member function 'void BALL::AromaticityProcessor::aromatize(const std::vector >&, BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C:660:3: note: in expansion of macro 'BALL_FOREACH_BOND' 660 | BALL_FOREACH_BOND(ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C:660:3: note: in expansion of macro 'BALL_FOREACH_BOND' 660 | BALL_FOREACH_BOND(ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/aromaticityProcessor.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/aromaticityProcessor.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/aromaticityProcessor.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C:10: /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C: In member function 'void BALL::AromaticityProcessor::aromatize(const std::vector >&, BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C:660:3: note: in expansion of macro 'BALL_FOREACH_BOND' 660 | BALL_FOREACH_BOND(ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C: In member function 'bool BALL::AromaticityProcessor::hasConjugatedDoubleBonds_(BALL::HashSet)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C:956:16: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 956 | bond_it = it; | ^~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/aromaticityProcessor.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C: In member function 'BALL::Size BALL::AromaticityProcessor::countPiElectrons_(BALL::HashSet&)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C:1008:29: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 1008 | for (j=(*i)->beginBond();j!=(*i)->endBond();++j) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/aromaticityProcessor.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C:1051:29: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 1051 | for (j=(*i)->beginBond();j!=(*i)->endBond();++j) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/aromaticityProcessor.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/aromaticityProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/automaticModelCreator.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/automaticModelCreator.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/automaticModelCreator.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/automaticModelCreator.h:2, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/automaticModelCreator.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/automaticModelCreator.h:2, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/automaticModelCreator.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/automaticModelCreator.h:2, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/automaticModelCreator.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/automaticModelCreator.h:2, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/automaticModelCreator.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/automaticModelCreator.h:2, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/automaticModelCreator.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/automaticModelCreator.h:2, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/automaticModelCreator.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/automaticModelCreator.C: In member function 'void BALL::QSAR::AutomaticModelCreator::optimizeParameters(BALL::QSAR::Model*)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/automaticModelCreator.C:35:39: warning: catching polymorphic type 'class BALL::QSAR::Exception::SingularMatrixError' by value [-Wcatch-value=] 35 | catch(Exception::SingularMatrixError e) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/automaticModelCreator.C: In member function 'BALL::QSAR::Model* BALL::QSAR::AutomaticModelCreator::generateModel()': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/automaticModelCreator.C:80:43: warning: catching polymorphic type 'class BALL::Exception::GeneralException' by value [-Wcatch-value=] 80 | catch(BALL::Exception::GeneralException e) | ^ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/automaticModelCreator.h:2, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/automaticModelCreator.C:1: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'BALL::QSAR::Model* BALL::QSAR::AutomaticModelCreator::generateModel()': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/bayesModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/bayesModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/bayesModel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/bayesModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/bayesModel.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/bayesModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/bayesModel.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/bayesModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/bayesModel.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/bayesModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/bayesModel.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/bayesModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/bayesModel.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/bayesModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/bayesModel.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/classificationModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/classificationModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/classificationModel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/classificationModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/classificationModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/classificationModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/classificationModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/classificationModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/classificationModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/classificationValidation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/classificationValidation.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/classificationValidation.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationValidation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/classificationValidation.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationValidation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/classificationValidation.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationValidation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/classificationValidation.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationValidation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/classificationValidation.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationValidation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/classificationValidation.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationValidation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/classificationValidation.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/configIO.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/configIO.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/configIO.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/modelFactory.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/registry.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/configIO.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/modelFactory.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/registry.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/configIO.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/modelFactory.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/registry.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/configIO.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/modelFactory.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/registry.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/configIO.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/modelFactory.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/registry.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/configIO.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/modelFactory.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/registry.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/configIO.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/rtti.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/macros.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h:18, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/configIO.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/configIO.C:1: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In static member function 'static BALL::QSAR::ModelConfiguration BALL::QSAR::ConfigIO::readModelConfiguration(std::istream*)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/connectivityBase.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/connectivityBase.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C: In member function 'virtual void BALL::ConnectivityBase::calculate_(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:109:31: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 109 | for (atom_it = ac.beginAtom(); atom_it != ac.endAtom(); ++atom_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:121:31: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 121 | for (atom_it = ac.beginAtom(); atom_it != ac.endAtom(); ++atom_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:135:26: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 135 | atom_it = ac.beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:136:32: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 136 | bond_it = atom_it->beginBond(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C: In member function 'virtual void BALL::ConnectivityBase::calculate_(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:136:32: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 136 | bond_it = atom_it->beginBond(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:138:3: note: in expansion of macro 'BALL_FOREACH_BOND' 138 | BALL_FOREACH_BOND (ac, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:138:3: note: in expansion of macro 'BALL_FOREACH_BOND' 138 | BALL_FOREACH_BOND (ac, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C: In member function 'void BALL::ConnectivityBase::recursion_(std::vector&, const BALL::Atom*, BALL::HashMap&)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:195:39: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 195 | for (bond_it = min_atom->beginBond(); bond_it != min_atom->endBond(); ++bond_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/processor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityBase.C:6: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 /usr/include/c++/10/bits/vector.tcc: In member function 'void BALL::ConnectivityBase::recursion_(std::vector&, const BALL::Atom*, BALL::HashMap&)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/connectivityDescriptors.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/connectivityDescriptors.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityDescriptors.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityDescriptors.C:8: /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityDescriptors.C: In member function 'virtual double BALL::ZagrebIndex::compute(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityDescriptors.C:50:3: note: in expansion of macro 'BALL_FOREACH_ATOM' 50 | BALL_FOREACH_ATOM (ac, atom_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityDescriptors.C:56:39: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 56 | for (bond_it = atom_it->beginBond(); bond_it != atom_it->endBond(); bond_it++) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityDescriptors.C: In member function 'virtual double BALL::ZagrebIndex::compute(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/connectivityDescriptors.C:56:39: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 56 | for (bond_it = atom_it->beginBond(); bond_it != atom_it->endBond(); bond_it++) | ^ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/descriptor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/descriptor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/descriptor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/descriptor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/descriptor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/descriptor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/descriptor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/descriptor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/descriptor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/exception.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/exception.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/exception.C [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/kernel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/kernel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kernel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kernel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kernel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kernel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kernel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kernel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kernel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/kernelModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/kernelModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kernelModel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kernelModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kernelModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kernelModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kernelModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kernelModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kernelModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kernelModel.C: In member function 'virtual void BALL::QSAR::KernelModel::calculateOffsets()': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kernelModel.C:60:8: warning: unused variable 'no_act' [-Wunused-variable] 60 | int no_act = training_result_.cols(); | ^~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kernelModel.C: In member function 'virtual void BALL::QSAR::KernelModel::saveToFile(std::string)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kernelModel.C:99:9: warning: variable 'sterr' set but not used [-Wunused-but-set-variable] 99 | bool sterr = 0; | ^~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/latentVariableModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/latentVariableModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/latentVariableModel.C [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/linearModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/linearModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/linearModel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/linearModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/linearModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/linearModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/linearModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/linearModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/linearModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/logitModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/logitModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/logitModel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/logitModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/logitModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/logitModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/logitModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/logitModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/logitModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/logitModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/logitModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/logitModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/logitModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/logitModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/logitModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/logitModel.C: In member function 'virtual Eigen::VectorXd BALL::QSAR::LogitModel::predict(const std::vector&, bool)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/logitModel.C:90:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'Eigen::Index' {aka 'int'} [-Wsign-compare] 90 | for (unsigned int i = 0; i < res.rows(); i++) | ~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/logitModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/logitModel.C:6: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'virtual void BALL::QSAR::LogitModel::readFromFile(std::string)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/Model.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/Model.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/Model.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/Model.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/Model.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/Model.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/Model.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/Model.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/Model.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/Model.C: In member function 'void BALL::QSAR::Model::readDescriptorInformation()': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/Model.C:182:29: warning: variable 'y_transform' set but not used [-Wunused-but-set-variable] 182 | bool transform = 0; bool y_transform = 0; | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/Model.C: In member function 'Eigen::VectorXd BALL::QSAR::Model::getSubstanceVector(const VectorXd&, bool)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/Model.C:316:51: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'Eigen::Index' {aka 'int'} [-Wsign-compare] 316 | if ( (data != NULL && data->getNoDescriptors() != substance.rows()) || (data == NULL && substance.rows() <= *(descriptor_IDs_.end()--)) ) | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/Model.C:316:109: warning: comparison of integer expressions of different signedness: 'Eigen::Index' {aka 'int'} and 'const unsigned int' [-Wsign-compare] 316 | if ( (data != NULL && data->getNoDescriptors() != substance.rows()) || (data == NULL && substance.rows() <= *(descriptor_IDs_.end()--)) ) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/Model.C: In member function 'void BALL::QSAR::Model::readVector(Eigen::RowVectorXd&, std::ifstream&, unsigned int, bool)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/Model.C:486:94: warning: unused parameter 'column_vector' [-Wunused-parameter] 486 | void Model::readVector(Eigen::RowVectorXd & vec, ifstream& in, unsigned int no_cells, bool column_vector) | ~~~~~^~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/Model.C:6: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/10/bits/vector.tcc: In member function 'void BALL::QSAR::Model::readModelParametersFromFile(std::ifstream&)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/modelFactory.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/modelFactory.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/modelFactory.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/modelFactory.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/modelFactory.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/modelFactory.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/modelFactory.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/modelFactory.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/modelFactory.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/modelFactory.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/modelFactory.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/modelFactory.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/modelFactory.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/modelFactory.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/modelFactory.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/nBModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/nBModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/nBModel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/bayesModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nBModel.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/nBModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/bayesModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nBModel.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/nBModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/bayesModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nBModel.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/nBModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/bayesModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nBModel.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/nBModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/bayesModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nBModel.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/nBModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/bayesModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nBModel.h:14, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/nBModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/nBModel.C: In member function 'virtual void BALL::QSAR::NBModel::saveToFile(std::string)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/nBModel.C:240:9: warning: variable 'centered_y' set but not used [-Wunused-but-set-variable] 240 | bool centered_y = 0; | ^~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/common.h:4, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nBModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/nBModel.C:6: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/common.h:4, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nBModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/nBModel.C:6: /usr/include/c++/10/bits/stl_vector.h: In member function 'virtual std::vector BALL::QSAR::NBModel::getParameters() const': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/nonlinearModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/nonlinearModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/nonlinearModel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/nonlinearModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/nonlinearModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/nonlinearModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/nonlinearModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/nonlinearModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/nonlinearModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/partialChargeBase.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/partialChargeBase.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeBase.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/partialChargeBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeBase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/partialChargeBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeBase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/partialChargeBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeBase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/partialChargeBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeBase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/partialChargeBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeBase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/partialChargeBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeBase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeBase.C: In member function 'virtual void BALL::PartialChargeBase::calculate_(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeBase.C:108:26: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (it = ac.beginAtom(); it != ac.endAtom(); ++it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/partialChargeBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeBase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeBase.C: In member function 'virtual void BALL::PartialChargeBase::calculate_(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeBase.C:108:26: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 108 | for (it = ac.beginAtom(); it != ac.endAtom(); ++it) | ^ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/partialChargeDescriptors.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/partialChargeDescriptors.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeDescriptors.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/partialChargeBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/partialChargeDescriptors.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/partialChargeBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/partialChargeDescriptors.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/partialChargeBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/partialChargeDescriptors.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/partialChargeBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/partialChargeDescriptors.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/partialChargeBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/partialChargeDescriptors.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/partialChargeBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/partialChargeDescriptors.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/partialChargeProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/partialChargeProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeProcessor.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeProcessor.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeProcessor.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeProcessor.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeProcessor.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeProcessor.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeProcessor.C: In member function 'void BALL::PartialChargeProcessor::calculatePEOE(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeProcessor.C:85:27: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 85 | atom_it = ac.beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeProcessor.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeProcessor.C: In member function 'void BALL::PartialChargeProcessor::calculatePEOE(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeProcessor.C:85:27: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 85 | atom_it = ac.beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeProcessor.C:12: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeProcessor.C:88:4: note: in expansion of macro 'BALL_FOREACH_BOND' 88 | BALL_FOREACH_BOND (ac, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeProcessor.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeProcessor.C:12: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeProcessor.C:88:4: note: in expansion of macro 'BALL_FOREACH_BOND' 88 | BALL_FOREACH_BOND (ac, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeProcessor.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeProcessor.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeProcessor.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeProcessor.C:12: /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeProcessor.C: In member function 'void BALL::PartialChargeProcessor::calculatePEOE(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/partialChargeProcessor.C:88:4: note: in expansion of macro 'BALL_FOREACH_BOND' 88 | BALL_FOREACH_BOND (ac, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/QSARData.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/QSARData.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C: In member function 'void BALL::QSAR::QSARData::readSDFile(const char*)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:77:39: warning: catching polymorphic type 'class BALL::Exception::ParseError' by value [-Wcatch-value=] 77 | catch(BALL::Exception::ParseError e) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C: In member function 'void BALL::QSAR::QSARData::readSDFile(const char*, std::set&, bool, bool, bool, bool, bool)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:201:39: warning: catching polymorphic type 'class BALL::Exception::ParseError' by value [-Wcatch-value=] 201 | catch(BALL::Exception::ParseError e) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:292:44: warning: catching polymorphic type 'class BALL::Exception::InvalidFormat' by value [-Wcatch-value=] 292 | catch(BALL::Exception::InvalidFormat g) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:313:45: warning: catching polymorphic type 'class BALL::Exception::InvalidFormat' by value [-Wcatch-value=] 313 | catch(BALL::Exception::InvalidFormat g) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:330:41: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 330 | for(int p=no_internal_descriptors; p::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 332 | if(descriptor_matrix_[p].size() >::size_type' {aka 'unsigned int'} [-Wsign-compare] 343 | for(int act=0; act::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] 345 | if(Y_[act].size()&, bool, bool, bool)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:399:39: warning: catching polymorphic type 'class BALL::Exception::ParseError' by value [-Wcatch-value=] 399 | catch(BALL::Exception::ParseError e) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:460:45: warning: catching polymorphic type 'class BALL::Exception::InvalidFormat' by value [-Wcatch-value=] 460 | catch(BALL::Exception::InvalidFormat g) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:488:45: warning: catching polymorphic type 'class BALL::Exception::InvalidFormat' by value [-Wcatch-value=] 488 | catch(BALL::Exception::InvalidFormat g) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C: In member function 'void BALL::QSAR::QSARData::readCSVFile(const char*, int, bool, bool, const char*, bool, bool)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:1097:44: warning: catching polymorphic type 'class BALL::Exception::InvalidFormat' by value [-Wcatch-value=] 1097 | catch(BALL::Exception::InvalidFormat g) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:1119:45: warning: catching polymorphic type 'class BALL::Exception::InvalidFormat' by value [-Wcatch-value=] 1119 | catch(BALL::Exception::InvalidFormat g) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C: In member function 'std::vector BALL::QSAR::QSARData::evenSplit(int, int, int) const': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:1354:26: warning: comparison of integer expressions of different signedness: 'BALL::Size' {aka 'unsigned int'} and 'int' [-Wsign-compare] 1354 | if (i%no_test_splits == current_test_split_id) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/unordered/unordered_map.hpp:19, from /usr/include/boost/unordered_map.hpp:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashMap.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/timeStamp.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:41, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:6: /usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/unordered/unordered_map.hpp:19, from /usr/include/boost/unordered_map.hpp:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashMap.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/timeStamp.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:41, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:6: /usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:6: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:6: /usr/include/c++/10/bits/stl_vector.h: In member function 'void BALL::QSAR::QSARData::insertSubstance(const BALL::QSAR::QSARData*, int, bool)': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/10/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/unordered/unordered_map.hpp:19, from /usr/include/boost/unordered_map.hpp:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashMap.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/timeStamp.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:41, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:6: /usr/include/c++/10/bits/stl_algo.h: In member function 'void BALL::QSAR::QSARData::discretizeY(std::vector)': /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:6: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void BALL::QSAR::QSARData::calculateTopologicalDescriptors(BALL::Molecule&, BALL::MolecularSimilarity&, const std::map&)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void BALL::QSAR::QSARData::readCSVFile(const char*, int, bool, bool, const char*, bool, bool)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void BALL::QSAR::QSARData::readSDFile(const char*)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:6: /usr/include/c++/10/bits/stl_vector.h: In member function 'void BALL::QSAR::QSARData::readSDFile(const char*, std::set&, bool, bool, bool, bool, bool)': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/QSARData.C:6: /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void BALL::QSAR::QSARData::readSDFile(const char*, std::multiset&, bool, bool, bool)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/registry.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/registry.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/registry.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/modelFactory.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/registry.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/registry.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/modelFactory.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/registry.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/registry.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/modelFactory.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/registry.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/registry.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/modelFactory.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/registry.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/registry.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/modelFactory.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/registry.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/registry.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/modelFactory.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/registry.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/registry.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/factory.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/modelFactory.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/registry.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/registry.C:1: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In constructor 'BALL::QSAR::Registry::Registry()': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/regressionModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/regressionModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/regressionModel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/regressionModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/regressionModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/regressionModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/regressionModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/regressionModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/regressionModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/regressionModel.C: In member function 'void BALL::QSAR::RegressionModel::show()': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/regressionModel.C:48:9: warning: variable 'sterr' set but not used [-Wunused-but-set-variable] 48 | bool sterr = 0; | ^~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/regressionModel.C: In member function 'virtual void BALL::QSAR::RegressionModel::saveToFile(std::string)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/regressionModel.C:129:9: warning: variable 'sterr' set but not used [-Wunused-but-set-variable] 129 | bool sterr = 0; | ^~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/regressionModel.C: In member function 'virtual void BALL::QSAR::RegressionModel::saveDescriptorInformationToFile(std::ofstream&)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/regressionModel.C:259:45: warning: comparison of integer expressions of different signedness: 'Eigen::Index' {aka 'int'} and 'std::multiset::size_type' {aka 'unsigned int'} [-Wsign-compare] 259 | bool trained = (training_result_.rows() == descriptor_IDs_.size()); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/regressionModel.C:285:45: warning: comparison of integer expressions of different signedness: 'Eigen::Index' {aka 'int'} and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 285 | bool trained = (training_result_.rows() == descriptor_names_.size()); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/regressionValidation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/regressionValidation.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/regressionValidation.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionValidation.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/regressionValidation.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionValidation.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/regressionValidation.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionValidation.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/regressionValidation.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionValidation.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/regressionValidation.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionValidation.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/regressionValidation.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionValidation.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/regressionValidation.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/regressionValidation.C: In member function 'virtual void BALL::QSAR::RegressionValidation::testInputData(bool)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/regressionValidation.C:252:8: warning: variable 'col' set but not used [-Wunused-but-set-variable] 252 | int col = model_->data->descriptor_matrix_.size(); | ^~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/ringPerceptionProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/ringPerceptionProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/ringPerceptionProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/ringPerceptionProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/ringPerceptionProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/ringPerceptionProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/ringPerceptionProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/ringPerceptionProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:8: /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C: In member function 'virtual BALL::Processor::Result BALL::RingPerceptionProcessor::operator()(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:59:2: note: in expansion of macro 'BALL_FOREACH_ATOM' 59 | BALL_FOREACH_ATOM(ac, a_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/ringPerceptionProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:8: /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C: In member function 'virtual BALL::Processor::Result BALL::RingPerceptionProcessor::operator()(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:59:2: note: in expansion of macro 'BALL_FOREACH_ATOM' 59 | BALL_FOREACH_ATOM(ac, a_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:68:2: note: in expansion of macro 'BALL_FOREACH_BOND' 68 | BALL_FOREACH_BOND(ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/ringPerceptionProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:68:2: note: in expansion of macro 'BALL_FOREACH_BOND' 68 | BALL_FOREACH_BOND(ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/ringPerceptionProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/ringPerceptionProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/ringPerceptionProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:8: /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C: In member function 'virtual BALL::Processor::Result BALL::RingPerceptionProcessor::operator()(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:68:2: note: in expansion of macro 'BALL_FOREACH_BOND' 68 | BALL_FOREACH_BOND(ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/ringPerceptionProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/simpleMolecularGraph.h: In instantiation of 'BALL::TSimpleMolecularGraph::TSimpleMolecularGraph(const BALL::Molecule&) [with Node = int; Edge = int]': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:89:37: required from here /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/simpleMolecularGraph.h:228:11: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 228 | for (ai = molecule.beginAtom(); +ai; ++ai) | ~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/ringPerceptionProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/ringPerceptionProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/simpleMolecularGraph.h:230:12: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 230 | for (bi = ai->beginBond(); +bi; ++bi) | ~~~^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/ringPerceptionProcessor.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ringPerceptionProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/simpleBase.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/simpleBase.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleBase.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleBase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleBase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleBase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleBase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleBase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleBase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleBase.C:8: /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleBase.C: In member function 'virtual void BALL::SimpleBase::calculate_(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleBase.C:269:3: note: in expansion of macro 'BALL_FOREACH_BOND' 269 | BALL_FOREACH_BOND (ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleBase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleBase.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleBase.C:269:3: note: in expansion of macro 'BALL_FOREACH_BOND' 269 | BALL_FOREACH_BOND (ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleBase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleBase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleBase.C:8: /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleBase.C: In member function 'virtual void BALL::SimpleBase::calculate_(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleBase.C:269:3: note: in expansion of macro 'BALL_FOREACH_BOND' 269 | BALL_FOREACH_BOND (ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/simpleDescriptors.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/simpleDescriptors.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleDescriptors.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleDescriptors.C:9: /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleDescriptors.C: In member function 'virtual double BALL::NumberOfHydrophobicAtoms::compute(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleDescriptors.C:677:4: note: in expansion of macro 'BALL_FOREACH_ATOM' 677 | BALL_FOREACH_ATOM (ac, a_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleDescriptors.C:9: /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleDescriptors.C: In member function 'virtual double BALL::NumberOfHydrophobicAtoms::compute(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleDescriptors.C:677:4: note: in expansion of macro 'BALL_FOREACH_ATOM' 677 | BALL_FOREACH_ATOM (ac, a_it) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleDescriptors.C: In member function 'virtual double BALL::NumberOfHydrogenBondDonors::compute(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleDescriptors.C:746:4: note: in expansion of macro 'BALL_FOREACH_ATOM' 746 | BALL_FOREACH_ATOM (ac, a_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleDescriptors.C:9: /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleDescriptors.C: In member function 'virtual double BALL::NumberOfHydrogenBondAcceptors::compute(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleDescriptors.C:815:4: note: in expansion of macro 'BALL_FOREACH_ATOM' 815 | BALL_FOREACH_ATOM (ac, a_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/simpleDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/snBModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/snBModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/snBModel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/bayesModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/snBModel.h:18, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/snBModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/bayesModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/snBModel.h:18, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/snBModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/bayesModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/snBModel.h:18, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/snBModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/bayesModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/snBModel.h:18, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/snBModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/bayesModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/snBModel.h:18, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/snBModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/bayesModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/snBModel.h:18, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/snBModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/snBModel.C: In member function 'virtual void BALL::QSAR::SNBModel::saveToFile(std::string)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/snBModel.C:234:9: warning: variable 'centered_y' set but not used [-Wunused-but-set-variable] 234 | bool centered_y = 0; | ^~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/common.h:4, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/snBModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/snBModel.C:6: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/common.h:4, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/snBModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/snBModel.C:6: /usr/include/c++/10/bits/stl_vector.h: In member function 'virtual std::vector BALL::QSAR::SNBModel::getParameters() const': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In member function 'virtual void BALL::QSAR::SNBModel::train()': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/statistics.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/statistics.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/statistics.C /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/statistics.C: In static member function 'static double BALL::QSAR::Statistics::calculateRankCorrelation(std::vector&, std::vector&)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/statistics.C:169:28: warning: comparison of integer expressions of different signedness: 'BALL::Size' {aka 'unsigned int'} and 'int' [-Wsign-compare] 169 | for(Size i=position; i& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/surfaceBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/surfaceBase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/surfaceBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/surfaceBase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/surfaceBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/surfaceBase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/surfaceBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/surfaceBase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/surfaceBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/surfaceBase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/surfaceDescriptors.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/surfaceDescriptors.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/surfaceDescriptors.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/surfaceBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/surfaceDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/surfaceDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/surfaceBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/surfaceDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/surfaceDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/surfaceBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/surfaceDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/surfaceDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/surfaceBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/surfaceDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/surfaceDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/surfaceBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/surfaceDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/surfaceDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h:14, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/surfaceBase.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/surfaceDescriptors.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/surfaceDescriptors.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/svmModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/svmModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/svmModel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/svmModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/svmModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/svmModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/svmModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/svmModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/svmModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/svmModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/svmModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/svmModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/svmModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/svmModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/svmModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/svrModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/svrModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/svrModel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/svrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/svrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/svrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/svrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/svrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/svrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/svrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/svrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/svrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/svrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/svrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/svrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/validation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/validation.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/validation.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/validation.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/validation.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/validation.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/validation.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/validation.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/validation.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/validation.C:5: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/validation.C:5: /usr/include/c++/10/bits/stl_vector.h: In member function 'void BALL::QSAR::Validation::setTestLine(int, int, bool)': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/allModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/allModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/allModel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/allModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/allModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/allModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/allModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/allModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/allModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/allModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/allModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/allModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/allModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/allModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/allModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/allModel.C: In member function 'virtual void BALL::QSAR::ALLModel::saveToFile(std::string)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/allModel.C:202:9: warning: variable 'sterr' set but not used [-Wunused-but-set-variable] 202 | bool sterr = 0; | ^~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/allModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/allModel.C:6: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/allModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/allModel.C:6: /usr/include/c++/10/bits/stl_vector.h: In member function 'virtual std::vector BALL::QSAR::ALLModel::getParameters() const': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/featureSelection.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/featureSelection.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/featureSelection.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/featureSelection.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/featureSelection.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/featureSelection.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/featureSelection.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/featureSelection.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/featureSelection.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/featureSelection.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/featureSelection.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/featureSelection.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/featureSelection.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/featureSelection.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/featureSelection.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/featureSelection.C: In member function 'void BALL::QSAR::FeatureSelection::forward(bool, int, bool)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/featureSelection.C:134:37: warning: catching polymorphic type 'class BALL::QSAR::Exception::NoPCAVariance' by value [-Wcatch-value=] 134 | catch(Exception::NoPCAVariance e) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/featureSelection.C: In member function 'void BALL::QSAR::FeatureSelection::backwardSelection(int, bool)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/featureSelection.C:288:37: warning: catching polymorphic type 'class BALL::QSAR::Exception::NoPCAVariance' by value [-Wcatch-value=] 288 | catch(Exception::NoPCAVariance e) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/featureSelection.C: In member function 'void BALL::QSAR::FeatureSelection::twinScan(int, bool)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/featureSelection.C:449:36: warning: catching polymorphic type 'class BALL::QSAR::Exception::NoPCAVariance' by value [-Wcatch-value=] 449 | catch(Exception::NoPCAVariance e) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/featureSelection.C:456:59: warning: variable 'it' set but not used [-Wunused-but-set-variable] 456 | std::multiset< pair >::iterator it = potential_descriptors.insert(make_pair(1-model_->model_val->getCVRes(), i)); | ^~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/featureSelection.C:485:36: warning: catching polymorphic type 'class BALL::QSAR::Exception::NoPCAVariance' by value [-Wcatch-value=] 485 | catch(Exception::NoPCAVariance e) | ^ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/gpModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/gpModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/gpModel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/gpModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/gpModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/gpModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/gpModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/gpModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/gpModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/gpModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/gpModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/gpModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/gpModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/gpModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/gpModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/gpModel.C: In member function 'virtual double BALL::QSAR::GPModel::calculateStdErr()': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/gpModel.C:88:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'Eigen::Index' {aka 'int'} [-Wsign-compare] 88 | for (unsigned int i = 1; i <= K_t_.cols(); i++) | ~~^~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/gpModel.C:90:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'Eigen::Index' {aka 'int'} [-Wsign-compare] 90 | for (unsigned int j = 1; j <= K_t_.cols(); j++) | ~~^~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/knnModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/knnModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/knnModel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/allModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/knnModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/knnModel.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/allModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/knnModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/knnModel.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/allModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/knnModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/knnModel.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/allModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/knnModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/knnModel.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/allModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/knnModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/knnModel.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/allModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/knnModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/knnModel.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/allModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/knnModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/knnModel.C:1: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/allModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/knnModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/knnModel.C:1: /usr/include/c++/10/bits/stl_vector.h: In member function 'virtual std::vector BALL::QSAR::KNNModel::getParameters() const': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/kpcrModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/kpcrModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kpcrModel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kpcrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kpcrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kpcrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kpcrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kpcrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kpcrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kpcrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kpcrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kpcrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kpcrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kpcrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kpcrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/kplsModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/kplsModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kplsModel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kplsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kplsModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kplsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kplsModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kplsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kplsModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kplsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kplsModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kplsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kplsModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kplsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/kplsModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/ldaModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/ldaModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ldaModel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/ldaModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ldaModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/ldaModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ldaModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/ldaModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ldaModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/ldaModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ldaModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/ldaModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ldaModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/ldaModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ldaModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ldaModel.C: In member function 'virtual Eigen::VectorXd BALL::QSAR::LDAModel::predict(const std::vector&, bool)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ldaModel.C:123:33: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'Eigen::Index' {aka 'int'} [-Wsign-compare] 123 | for (unsigned int i = 0; i < s.rows(); i++) | ~~^~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ldaModel.C: In member function 'virtual void BALL::QSAR::LDAModel::saveToFile(std::string)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/ldaModel.C:169:9: warning: variable 'centered_y' set but not used [-Wunused-but-set-variable] 169 | bool centered_y = 0; | ^~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/mlrModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/mlrModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/mlrModel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/mlrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/mlrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/mlrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/mlrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/mlrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/mlrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/mlrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/mlrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/mlrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/mlrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/mlrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/mlrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/mlrModel.C: In member function 'virtual void BALL::QSAR::MLRModel::train()': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/mlrModel.C:48:44: warning: catching polymorphic type 'class BALL::Exception::GeneralException' by value [-Wcatch-value=] 48 | catch(BALL::Exception::GeneralException e) | ^ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/oplsModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/oplsModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/oplsModel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/plsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/oplsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/oplsModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/plsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/oplsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/oplsModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/plsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/oplsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/oplsModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/plsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/oplsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/oplsModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/plsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/oplsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/oplsModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/plsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/oplsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/oplsModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/oplsModel.C: In member function 'virtual void BALL::QSAR::OPLSModel::train()': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/oplsModel.C:43:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'Eigen::Index' {aka 'int'} [-Wsign-compare] 43 | for (unsigned int i = 1; i <= u.rows(); i++) | ~~^~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/plsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/oplsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/oplsModel.C:6: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'virtual std::vector BALL::QSAR::OPLSModel::getParameters() const': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/pcrModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/pcrModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/pcrModel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/pcrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/pcrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/pcrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/pcrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/pcrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/pcrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/pcrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/pcrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/pcrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/pcrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/pcrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/pcrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/pcrModel.C: In static member function 'static void BALL::QSAR::PCRModel::calculateEigenvectors(const MatrixXd&, double, Eigen::MatrixXd&)': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/pcrModel.C:46:23: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'Eigen::Index' {aka 'int'} [-Wsign-compare] 46 | for (; last_vector < svd.singularValues().rows() && cols < data.rows() && explained_var/complete_var < frac_var ; last_vector++) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/pcrModel.C:46:61: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'Eigen::Index' {aka 'int'} [-Wsign-compare] 46 | for (; last_vector < svd.singularValues().rows() && cols < data.rows() && explained_var/complete_var < frac_var ; last_vector++) | ~~~~~^~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/pcrModel.C:55:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'Eigen::Index' {aka 'int'} [-Wsign-compare] 55 | for (unsigned int i = 0; i < data.rows(); i++) | ~~^~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/plsModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/plsModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/plsModel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/plsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/plsModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/plsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/plsModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/plsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/plsModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/plsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/plsModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/plsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/plsModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/plsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/plsModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/SVD:36, from /usr/include/eigen3/Eigen/Dense:5, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/plsModel.C:8: /usr/include/eigen3/Eigen/src/SVD/SVDBase.h: In function 'void Eigen::SVDBase::_solve_impl(const RhsType&, DstType&) const [with RhsType = Eigen::Transpose >; DstType = Eigen::Matrix; Derived = Eigen::JacobiSVD, 2>]': /usr/include/eigen3/Eigen/src/SVD/SVDBase.h:261:6: note: parameter passing for argument of type 'const Eigen::Transpose >' changed in GCC 7.1 261 | void SVDBase::_solve_impl(const RhsType &rhs, DstType &dst) const | ^~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:489, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/statistics.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:32, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/plsModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/plsModel.C:6: /usr/include/eigen3/Eigen/src/Core/Solve.h: In function 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Solve, 2>, Eigen::Transpose > >, 0>; Func = Eigen::internal::assign_op]': /usr/include/eigen3/Eigen/src/Core/Solve.h:147:26: note: parameter passing for argument of type 'const Eigen::Transpose >' changed in GCC 7.1 147 | src.dec()._solve_impl(src.rhs(), dst); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/Solve.h:147:26: note: parameter passing for argument of type 'const Eigen::Transpose >' changed in GCC 7.1 147 | src.dec()._solve_impl(src.rhs(), dst); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/rrModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/QSAR/rrModel.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/rrModel.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/mlrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/rrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/rrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/mlrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/rrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/rrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/mlrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/rrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/rrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/mlrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/rrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/rrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/mlrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/rrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/rrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/mlrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/rrModel.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/rrModel.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/rrModel.C: In member function 'virtual void BALL::QSAR::RRModel::train()': /build/ball-1.5.0+git20180813.37fc53c/source/QSAR/rrModel.C:70:44: warning: catching polymorphic type 'class BALL::Exception::GeneralException' by value [-Wcatch-value=] 70 | catch(BALL::Exception::GeneralException e) | ^ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/baseFunction.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMMON/baseFunction.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/baseFunction.C [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/diffScoringFunction.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMMON/diffScoringFunction.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/diffScoringFunction.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffScoringFunction.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/diffScoringFunction.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffScoringFunction.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/diffScoringFunction.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffScoringFunction.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/diffScoringFunction.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffScoringFunction.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/diffScoringFunction.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffScoringFunction.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/diffScoringFunction.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffScoringFunction.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/diffScoringFunction.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/diffGridBasedScoring.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMMON/diffGridBasedScoring.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/diffGridBasedScoring.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/diffGridBasedScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/diffGridBasedScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/diffGridBasedScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/diffGridBasedScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/diffGridBasedScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/diffGridBasedScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/gridBasedScoring.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMMON/gridBasedScoring.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/gridBasedScoring.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/gridBasedScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/gridBasedScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/gridBasedScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/gridBasedScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/gridBasedScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/gridBasedScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/gridBasedScoring.C:6: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/gridBasedScoring.C:6: /usr/include/c++/10/bits/stl_vector.h: In member function 'void BALL::GridBasedScoring::GridSetsResult::setup(BALL::Size)': /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/linearBaseFunction.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMMON/linearBaseFunction.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/linearBaseFunction.C [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/fermiBaseFunction.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMMON/fermiBaseFunction.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/fermiBaseFunction.C [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/rescorer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMMON/rescorer.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:2: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:2: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:2: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:2: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:2: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:2: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/file.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/molFileFactory.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:3: note: in expansion of macro 'BALL_CREATE' 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/file.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/molFileFactory.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:34: note: because 'BALL::MMFF94StretchParameters' has user-provided 'const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)' 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/file.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/molFileFactory.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:31: note: because 'BALL::MMFF94BendParameters' has user-provided 'const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)' 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/file.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/molFileFactory.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:38: note: because 'BALL::MMFF94StretchBendParameters' has user-provided 'const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)' 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/file.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/molFileFactory.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:34: note: because 'BALL::MMFF94TorsionParameters' has user-provided 'const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)' 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/file.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/molFileFactory.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:32: note: because 'BALL::MMFF94PlaneParameters' has user-provided 'const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)' 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/file.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/molFileFactory.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:30: note: because 'BALL::MMFF94VDWParameters' has user-provided 'const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)' 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/file.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/molFileFactory.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:29: note: because 'BALL::MMFF94ESParameters' has user-provided 'const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)' 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/file.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/molFileFactory.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C: In static member function 'static void BALL::Rescorer::processMultiMoleculeFile(BALL::ScoringFunction*, BALL::StructurePreparer*, BALL::String, BALL::Rescoring*, bool, double, BALL::String, BALL::GenericMolFile*, BALL::GenericMolFile*, double, bool)': /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/rescorer.C:390:45: warning: catching polymorphic type 'class BALL::Exception::GeneralException' by value [-Wcatch-value=] 390 | catch (BALL::Exception::GeneralException e) | ^ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/scoreGridSet.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMMON/scoreGridSet.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoreGridSet.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoreGridSet.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoreGridSet.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoreGridSet.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoreGridSet.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoreGridSet.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoreGridSet.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoreGridSet.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoreGridSet.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoreGridSet.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoreGridSet.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoreGridSet.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoreGridSet.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoreGridSet.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoreGridSet.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h: In instantiation of 'BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1667:20: required from 'void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = BALL::Atom*; std::ostream = std::basic_ostream; BALL::Size = unsigned int]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1625:7: required from here /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1726:46: warning: comparison of integer expressions of different signedness: 'int' and 'BALL::Size' {aka 'unsigned int'} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringComponent.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringComponent.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringComponent.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringComponent.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringComponent.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringComponent.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringComponent.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringComponent.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringComponent.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringFunction.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringFunction.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringFunction.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringFunction.C:4: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringFunction.C:4: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringFunction.C:4: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringFunction.C:4: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringFunction.C:4: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringFunction.C:4: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringFunction.C:4: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h: In instantiation of 'BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1667:20: required from 'void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = BALL::Atom*; std::ostream = std::basic_ostream; BALL::Size = unsigned int]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1625:7: required from here /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1726:46: warning: comparison of integer expressions of different signedness: 'int' and 'BALL::Size' {aka 'unsigned int'} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringOptimizer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringOptimizer.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringOptimizer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringOptimizer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringOptimizer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringOptimizer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringOptimizer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringOptimizer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringOptimizer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:3: note: in expansion of macro 'BALL_CREATE' 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:14: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringOptimizer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:14: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:34: note: because 'BALL::MMFF94StretchParameters' has user-provided 'const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)' 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringOptimizer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:14: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:31: note: because 'BALL::MMFF94BendParameters' has user-provided 'const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)' 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringOptimizer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:14: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:38: note: because 'BALL::MMFF94StretchBendParameters' has user-provided 'const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)' 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringOptimizer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:14: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:34: note: because 'BALL::MMFF94TorsionParameters' has user-provided 'const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)' 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringOptimizer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:14: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:32: note: because 'BALL::MMFF94PlaneParameters' has user-provided 'const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)' 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringOptimizer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:14: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:30: note: because 'BALL::MMFF94VDWParameters' has user-provided 'const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)' 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringOptimizer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:14: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:29: note: because 'BALL::MMFF94ESParameters' has user-provided 'const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)' 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringOptimizer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C: In member function 'void BALL::ScoringOptimizer::evaluate(double*, double*, double*, BALL::Size*)': /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMMON/scoringOptimizer.C:187:43: warning: catching polymorphic type 'class BALL::Exception::GeneralException' by value [-Wcatch-value=] 187 | catch(BALL::Exception::GeneralException e) | ^ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/aromaticRingStacking.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/aromaticRingStacking.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/aromaticRingStacking.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/aromaticityProcessor.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/aromaticRingStacking.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/aromaticRingStacking.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/aromaticityProcessor.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/aromaticRingStacking.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/aromaticRingStacking.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/aromaticityProcessor.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/aromaticRingStacking.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/aromaticRingStacking.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/aromaticityProcessor.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/aromaticRingStacking.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/aromaticRingStacking.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/aromaticityProcessor.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/aromaticRingStacking.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/aromaticRingStacking.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/aromaticityProcessor.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/aromaticRingStacking.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/aromaticRingStacking.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/advElectrostatic.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/advElectrostatic.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/advElectrostatic.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/advElectrostatic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/advElectrostatic.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/lennardJones.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/advElectrostatic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/advElectrostatic.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/advElectrostatic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/advElectrostatic.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/lennardJones.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/advElectrostatic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/advElectrostatic.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/advElectrostatic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/advElectrostatic.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/lennardJones.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/advElectrostatic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/advElectrostatic.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/fragmentationalSolvation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/fragmentationalSolvation.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fragmentationalSolvation.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/fragmentationalSolvation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fragmentationalSolvation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/fragmentationalSolvation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fragmentationalSolvation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/fragmentationalSolvation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fragmentationalSolvation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/fragmentationalSolvation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fragmentationalSolvation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/fragmentationalSolvation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fragmentationalSolvation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/fragmentationalSolvation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fragmentationalSolvation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/fragmentationalSolvation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fragmentationalSolvation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h: In instantiation of 'BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1667:20: required from 'void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = BALL::Atom*; std::ostream = std::basic_ostream; BALL::Size = unsigned int]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1625:7: required from here /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1726:46: warning: comparison of integer expressions of different signedness: 'int' and 'BALL::Size' {aka 'unsigned int'} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/burialDepth.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/burialDepth.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/burialDepth.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/burialDepth.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/burialDepth.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/burialDepth.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/burialDepth.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/burialDepth.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/burialDepth.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/burialDepth.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/burialDepth.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/burialDepth.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/burialDepth.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/burialDepth.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/burialDepth.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/buriedPolar.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/buriedPolar.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/buriedPolar.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/buriedPolar.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/buriedPolar.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/buriedPolar.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/buriedPolar.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/buriedPolar.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/buriedPolar.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/buriedPolar.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/buriedPolar.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/buriedPolar.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/buriedPolar.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/buriedPolar.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/buriedPolar.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/CHPI.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/CHPI.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/CHPI.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:20, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/CHPI.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/simpleBox3.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/CHPI.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:20, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/CHPI.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/simpleBox3.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/CHPI.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:20, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/CHPI.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/simpleBox3.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/CHPI.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/CHPISlick.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/CHPISlick.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/CHPISlick.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:20, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/CHPISlick.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/simpleBox3.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/CHPISlick.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:20, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/CHPISlick.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/simpleBox3.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/CHPISlick.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:20, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/CHPISlick.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/simpleBox3.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/CHPISlick.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/electrostatic.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/electrostatic.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/electrostatic.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/electrostatic.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/lennardJones.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/electrostatic.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/electrostatic.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/lennardJones.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/electrostatic.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/electrostatic.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/lennardJones.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/electrostatic.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/fresnoTypes.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/fresnoTypes.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fresnoTypes.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/fresnoTypes.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fresnoTypes.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/fresnoTypes.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fresnoTypes.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/fresnoTypes.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fresnoTypes.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/fresnoTypes.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fresnoTypes.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/fresnoTypes.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fresnoTypes.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/fresnoTypes.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fresnoTypes.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fresnoTypes.C:9: /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fresnoTypes.C: In member function 'virtual bool BALL::FresnoTypes::setup()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:77:49: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 77 | for (bond_iterator = (bond_container).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fresnoTypes.C:310:6: note: in expansion of macro 'BALL_FOREACH_ATOM_BOND' 310 | BALL_FOREACH_ATOM_BOND(*atom, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/fresnoTypes.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fresnoTypes.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/fresnoTypes.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fresnoTypes.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fresnoTypes.C:9: /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fresnoTypes.C: In member function 'virtual bool BALL::FresnoTypes::setup()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:77:49: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 77 | for (bond_iterator = (bond_container).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fresnoTypes.C:310:6: note: in expansion of macro 'BALL_FOREACH_ATOM_BOND' 310 | BALL_FOREACH_ATOM_BOND(*atom, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:77:49: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 77 | for (bond_iterator = (bond_container).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fresnoTypes.C:365:7: note: in expansion of macro 'BALL_FOREACH_ATOM_BOND' 365 | BALL_FOREACH_ATOM_BOND(*atom, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/fresnoTypes.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/fresnoTypes.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/hydrogenBond.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/hydrogenBond.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/hydrogenBond.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/hydrogenBond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/hydrogenBond.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/hydrogenBond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/hydrogenBond.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/hydrogenBond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/hydrogenBond.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/hydrogenBond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/hydrogenBond.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/hydrogenBond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/hydrogenBond.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/hydrogenBond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/hydrogenBond.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/hydrogenBondSlick.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/hydrogenBondSlick.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/hydrogenBondSlick.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/hydrogenBondSlick.h:7, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/hydrogenBondSlick.C:4: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/hydrogenBondSlick.h:7, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/hydrogenBondSlick.C:4: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/hydrogenBondSlick.h:7, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/hydrogenBondSlick.C:4: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/hydrogenBondSlick.h:7, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/hydrogenBondSlick.C:4: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/hydrogenBondSlick.h:7, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/hydrogenBondSlick.C:4: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/hydrogenBondSlick.h:7, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/hydrogenBondSlick.C:4: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/hydrogenBondSlick.C: In member function 'virtual bool BALL::HydrogenBondSlick::setup()': /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/hydrogenBondSlick.C:147:35: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 147 | for (lig_it = lig->beginAtom(); +lig_it; ++lig_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/hydrogenBondSlick.h:7, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/hydrogenBondSlick.C:4: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/hydrogenBondSlick.C:173:32: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 173 | for (lig_it = lig->beginAtom(); +lig_it; ++lig_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/hydrogenBondSlick.h:7, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/hydrogenBondSlick.C:4: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/hydrogenBondSlick.C:179:35: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 179 | for (rec_it = rec->beginAtom(); +rec_it; ++rec_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/hydrogenBondSlick.h:7, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/hydrogenBondSlick.C:4: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/lipophilic.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/lipophilic.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/lipophilic.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/lipophilic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/lipophilic.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/lipophilic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/lipophilic.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/lipophilic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/lipophilic.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/lipophilic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/lipophilic.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/lipophilic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/lipophilic.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/lipophilic.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/lipophilic.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/polarity.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/polarity.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarity.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarity.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarity.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarity.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarity.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarity.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarity.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarity.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarity.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarity.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarity.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarity.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarity.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarity.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarity.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h: In instantiation of 'BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1516:17: required from 'bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::Atom*; BALL::Position = unsigned int]' /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarity.C:167:49: required from here /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1726:46: warning: comparison of integer expressions of different signedness: 'int' and 'BALL::Size' {aka 'unsigned int'} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/PB.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/PB.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PB.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PB.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PB.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PB.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PB.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PB.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PB.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PB.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PB.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PB.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PB.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PB.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PB.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/PLP.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/PLP.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:3: note: in expansion of macro 'BALL_CREATE' 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:34: note: because 'BALL::MMFF94StretchParameters' has user-provided 'const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)' 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:31: note: because 'BALL::MMFF94BendParameters' has user-provided 'const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)' 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:38: note: because 'BALL::MMFF94StretchBendParameters' has user-provided 'const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)' 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:34: note: because 'BALL::MMFF94TorsionParameters' has user-provided 'const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)' 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:32: note: because 'BALL::MMFF94PlaneParameters' has user-provided 'const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)' 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:30: note: because 'BALL::MMFF94VDWParameters' has user-provided 'const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)' 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:29: note: because 'BALL::MMFF94ESParameters' has user-provided 'const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)' 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C: In member function 'const BALL::PLP& BALL::PLP::operator=(const BALL::PLP&)': /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:147:32: warning: implicitly-declared 'BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)' is deprecated [-Wdeprecated-copy] 147 | ForceFieldComponent::operator = (anb); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:61:3: note: because 'BALL::ForceFieldComponent' has user-provided 'BALL::ForceFieldComponent::ForceFieldComponent(const BALL::ForceFieldComponent&)' 61 | ForceFieldComponent(const ForceFieldComponent& force_field_component); | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h: In member function 'BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:34:20: warning: implicitly-declared 'BALL::ScoringComponent& BALL::ScoringComponent::operator=(const BALL::ScoringComponent&)' is deprecated [-Wdeprecated-copy] 34 | class BALL_EXPORT ForceFieldComponent : public ScoringComponent | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:26:4: note: because 'BALL::ScoringComponent' has user-provided 'BALL::ScoringComponent::ScoringComponent(const BALL::ScoringComponent&)' 26 | ScoringComponent(const ScoringComponent& sc); | ^~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C: In member function 'const BALL::PLP& BALL::PLP::operator=(const BALL::PLP&)': /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:147:32: note: synthesized method 'BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)' first required here 147 | ForceFieldComponent::operator = (anb); | ^ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:147:38: warning: implicitly-declared 'BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)' is deprecated [-Wdeprecated-copy] 147 | ForceFieldComponent::operator = (anb); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/PLP.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:61:3: note: because 'BALL::ForceFieldComponent' has user-provided 'BALL::ForceFieldComponent::ForceFieldComponent(const BALL::ForceFieldComponent&)' 61 | ForceFieldComponent(const ForceFieldComponent& force_field_component); | ^~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/rotationalEntropy.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/rotationalEntropy.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/rotationalEntropy.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/rotationalEntropy.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/rotationalEntropy.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/rotationalEntropy.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/rotationalEntropy.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/rotationalEntropy.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/rotationalEntropy.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/rotationalEntropy.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/rotationalEntropy.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/rotationalEntropy.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/rotationalEntropy.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/rotationalEntropy.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/rotationalEntropy.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/solvation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/solvation.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/solvation.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/solvation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/solvation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/solvation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/solvation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/solvation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/solvation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/set:60, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/solvation.C:6: /usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = BALL::String; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/map:61, from /usr/include/boost/detail/container_fwd.hpp:94, from /usr/include/boost/container_hash/extensions.hpp:22, from /usr/include/boost/container_hash/hash.hpp:761, from /usr/include/boost/functional/hash.hpp:6, from /usr/include/boost/unordered/unordered_map.hpp:18, from /usr/include/boost/unordered_map.hpp:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashMap.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/timeStamp.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:41, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/solvation.C:6: /usr/include/c++/10/bits/stl_map.h: In constructor 'BALL::Solvation::Solvation(BALL::ScoringFunction&)': /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/nonpolarSolvation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/nonpolarSolvation.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/nonpolarSolvation.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/nonpolarSolvation.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/nonpolarSolvation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/nonpolarSolvation.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/nonpolarSolvation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/nonpolarSolvation.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/nonpolarSolvation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/nonpolarSolvation.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/nonpolarSolvation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/nonpolarSolvation.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/nonpolarSolvation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/nonpolarSolvation.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/nonpolarSolvation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/nonpolarSolvation.C: In member function 'virtual double BALL::NonpolarSolvation::updateScore()': /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/nonpolarSolvation.C:406:54: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 406 | src = getScoringFunction()->getLigand()->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/nonpolarSolvation.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/nonpolarSolvation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/nonpolarSolvation.C:407:27: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 407 | dst = ligand_.beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/nonpolarSolvation.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/nonpolarSolvation.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/nonpolarSolvation.C: In member function 'virtual double BALL::NonpolarSolvation::updateScore()': /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/nonpolarSolvation.C:407:27: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 407 | dst = ligand_.beginAtom(); | ^ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/polarSolvation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/polarSolvation.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarSolvation.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarSolvation.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarSolvation.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarSolvation.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarSolvation.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarSolvation.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C: In member function 'virtual double BALL::PolarSolvation::updateScore()': /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:261:54: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 261 | src = getScoringFunction()->getLigand()->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarSolvation.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:262:34: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 262 | dst = desolv_ligand_.beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarSolvation.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C: In member function 'virtual double BALL::PolarSolvation::updateScore()': /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:262:34: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 262 | dst = desolv_ligand_.beginAtom(); | ^ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:457:37: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 457 | it = desolv_protein_.beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarSolvation.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C: In member function 'bool BALL::PolarSolvation::computeFullCycle_(BALL::System&, BALL::Molecule&, BALL::Molecule&, float&)': /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:768:30: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 768 | for (it = ligand.beginAtom(); +it; ++it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarSolvation.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:795:31: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 795 | for (it = protein.beginAtom(); +it; ++it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarSolvation.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:832:30: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 832 | for (it = ligand.beginAtom(); +it; ++it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarSolvation.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:851:30: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 851 | for (it = ligand.beginAtom(); +it; ++it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarSolvation.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:874:31: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 874 | for (it = protein.beginAtom(); +it; ++it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarSolvation.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:905:25: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 905 | it = system.beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarSolvation.h:6, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/polarSolvation.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/vanDerWaals.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/vanDerWaals.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaals.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/vanDerWaals.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaals.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/lennardJones.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/vanDerWaals.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaals.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/vanDerWaals.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaals.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/lennardJones.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/vanDerWaals.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaals.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/vanDerWaals.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaals.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/lennardJones.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/vanDerWaals.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaals.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/vanDerWaalsSlick.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/vanDerWaalsSlick.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaalsSlick.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:7, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:7, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:7, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:7, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:7, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:7, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaalsSlick.C: In member function 'virtual double BALL::VanDerWaalsSlick::updateScore()': /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:658:54: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 658 | src = getScoringFunction()->getLigand()->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:7, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:659:32: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 659 | dst = vdw_ligand_->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:7, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaalsSlick.C: In member function 'virtual double BALL::VanDerWaalsSlick::updateScore()': /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:659:32: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 659 | dst = vdw_ligand_->beginAtom(); | ^ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:683:33: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 683 | it = vdw_receptor_->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:7, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:697:31: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 697 | it = vdw_ligand_->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:7, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring.C:1: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring.C:1: /usr/include/c++/10/bits/stl_vector.h: In member function 'void BALL::Rescoring::addScoreContributions(BALL::Molecule*)': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In member function 'virtual double BALL::Rescoring::rescore(BALL::Molecule*)': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring1D.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring1D.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring1D.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring1D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring1D.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring1D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring1D.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring1D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring1D.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring1D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring1D.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring1D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring1D.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring1D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring1D.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring1D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring1D.C:6: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring1D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring1D.C:6: /usr/include/c++/10/bits/stl_vector.h: In member function 'void BALL::Rescoring1D::generateScoreContributions_(std::vector >*, std::vector*)': /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring3D.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring3D.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring3D.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring3D.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring3D.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring3D.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring3D.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring3D.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring3D.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring3D.C: In member function 'std::__cxx11::list*> > BALL::Rescoring3D::generateRegularData3DGrids()': /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring3D.C:112:30: warning: comparison of integer expressions of different signedness: 'BALL::Size' {aka 'unsigned int'} and 'Eigen::Index' {aka 'int'} [-Wsign-compare] 112 | if (sizeX_*sizeY_*sizeZ_ < coefficients->rows()) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring3D.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h: In instantiation of 'BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1667:20: required from 'void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = BALL::Atom*; std::ostream = std::basic_ostream; BALL::Size = unsigned int]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1625:7: required from here /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1726:46: warning: comparison of integer expressions of different signedness: 'int' and 'BALL::Size' {aka 'unsigned int'} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring3D.C:6: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring3D.C:6: /usr/include/c++/10/bits/stl_vector.h: In member function 'virtual void BALL::Rescoring3D::generateAtomScoreContributions_(const BALL::Atom*, std::vector&)': /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring3D.C:6: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring3D.C:6: /usr/include/c++/10/bits/stl_vector.h: In member function 'virtual void BALL::Rescoring3D::generateScoreContributions_(BALL::Molecule*, std::vector >*, std::vector*)': /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring4D.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring4D.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring4D.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring4D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring4D.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring4D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring4D.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring4D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring4D.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring4D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring4D.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring4D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring4D.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring4D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring4D.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring4D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring4D.C:1: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring4D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/rescoring4D.C:1: /usr/include/c++/10/bits/stl_vector.h: In member function 'virtual void BALL::Rescoring4D::generateAtomScoreContributions_(const BALL::Atom*, std::vector&)': /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/amberEvaluation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/amberEvaluation.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/amberEvaluation.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/amberEvaluation.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/amberEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/amberEvaluation.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/amberEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/amberEvaluation.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/amberEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/amberEvaluation.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/amberEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/amberEvaluation.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/amberEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/amberEvaluation.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/amberEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/energeticEvaluation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/energeticEvaluation.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/energeticEvaluation.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/energeticEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/energeticEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/energeticEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/energeticEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/energeticEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/energeticEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/forceFieldEvaluation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/forceFieldEvaluation.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/forceFieldEvaluation.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/forceFieldEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/forceFieldEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/forceFieldEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/forceFieldEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/forceFieldEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/forceFieldEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/gridedMM.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/gridedMM.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedMM.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedMM.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedMM.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedMM.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedMM.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedMM.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedMM.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedMM.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedMM.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedMM.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedMM.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedMM.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedMM.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/MMScoring.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/MMScoring.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/MMScoring.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffScoringFunction.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/MMScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/MMScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffScoringFunction.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/MMScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/MMScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffScoringFunction.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/MMScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/MMScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffScoringFunction.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/MMScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/MMScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffScoringFunction.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/MMScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/MMScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffScoringFunction.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/MMScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/MMScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/gridedPLP.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/gridedPLP.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:3: note: in expansion of macro 'BALL_CREATE' 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:34: note: because 'BALL::MMFF94StretchParameters' has user-provided 'const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)' 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:31: note: because 'BALL::MMFF94BendParameters' has user-provided 'const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)' 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:38: note: because 'BALL::MMFF94StretchBendParameters' has user-provided 'const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)' 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:34: note: because 'BALL::MMFF94TorsionParameters' has user-provided 'const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)' 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:32: note: because 'BALL::MMFF94PlaneParameters' has user-provided 'const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)' 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:30: note: because 'BALL::MMFF94VDWParameters' has user-provided 'const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)' 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:29: note: because 'BALL::MMFF94ESParameters' has user-provided 'const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)' 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/gridedPLP.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/PLPScoring.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/PLPScoring.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:3: note: in expansion of macro 'BALL_CREATE' 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:34: note: because 'BALL::MMFF94StretchParameters' has user-provided 'const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)' 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:31: note: because 'BALL::MMFF94BendParameters' has user-provided 'const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)' 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:38: note: because 'BALL::MMFF94StretchBendParameters' has user-provided 'const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)' 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:34: note: because 'BALL::MMFF94TorsionParameters' has user-provided 'const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)' 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:32: note: because 'BALL::MMFF94PlaneParameters' has user-provided 'const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)' 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:30: note: because 'BALL::MMFF94VDWParameters' has user-provided 'const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)' 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:29: note: because 'BALL::MMFF94ESParameters' has user-provided 'const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)' 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PLPScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/randomEvaluation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/randomEvaluation.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/randomEvaluation.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/randomEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/randomEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/randomEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/randomEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/randomEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/randomEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/randomEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/randomEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/randomEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/randomEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/randomEvaluation.h:8, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/randomEvaluation.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/PBScoring.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/PBScoring.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PBScoring.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PBScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PBScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PBScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PBScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PBScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PBScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PBScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PBScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PBScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PBScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PBScoring.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/PBScoring.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/slickEnergy.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/slickEnergy.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/slickEnergy.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/slickEnergy.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/slickEnergy.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/slickEnergy.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/slickEnergy.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/slickEnergy.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/slickEnergy.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/slickEnergy.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/slickEnergy.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/slickEnergy.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/slickEnergy.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/slickEnergy.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/slickEnergy.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/slickScore.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/slickScore.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/slickScore.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/slickScore.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/slickScore.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/slickScore.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/slickScore.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/slickScore.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/slickScore.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/slickScore.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/slickScore.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/slickScore.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/slickScore.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/slickScore.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SCORING/FUNCTIONS/slickScore.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/claverieParameter.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SOLVATION/claverieParameter.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/claverieParameter.C [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/electrostaticPotentialCalculator.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SOLVATION/electrostaticPotentialCalculator.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/electrostaticPotentialCalculator.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/electrostaticPotentialCalculator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/electrostaticPotentialCalculator.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/electrostaticPotentialCalculator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/electrostaticPotentialCalculator.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/electrostaticPotentialCalculator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/electrostaticPotentialCalculator.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/electrostaticPotentialCalculator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/electrostaticPotentialCalculator.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/electrostaticPotentialCalculator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/electrostaticPotentialCalculator.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/electrostaticPotentialCalculator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/electrostaticPotentialCalculator.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/electrostaticPotentialCalculator.C: In member function 'float BALL::ElectrostaticPotentialCalculator::operator()(const Vector3&)': /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/electrostaticPotentialCalculator.C:64:31: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 64 | for (atIt=mySys_.beginAtom();+atIt;++atIt) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/electrostaticPotentialCalculator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/electrostaticPotentialCalculator.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/electrostaticPotentialCalculator.C: In member function 'float BALL::ElectrostaticPotentialCalculator::operator()(const Vector3&)': /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/electrostaticPotentialCalculator.C:64:31: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 64 | for (atIt=mySys_.beginAtom();+atIt;++atIt) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/electrostaticPotentialCalculator.C:83:31: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 83 | for (atIt=mySys_.beginAtom();+atIt;++atIt) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/electrostaticPotentialCalculator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/electrostaticPotentialCalculator.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/generalizedBornCase.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SOLVATION/generalizedBornCase.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/generalizedBornCase.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/generalizedBornCase.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/generalizedBornCase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/generalizedBornCase.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/generalizedBornCase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/generalizedBornCase.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/generalizedBornCase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/generalizedBornCase.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/generalizedBornCase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/generalizedBornCase.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/generalizedBornCase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/generalizedBornCase.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/generalizedBornCase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/generalizedBornCase.C: In member function 'bool BALL::GeneralizedBornModel::setup(const BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/generalizedBornCase.C:235:29: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 235 | for (it1 = ac_->beginAtom(); +it1; ++it1) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/generalizedBornCase.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/generalizedBornCase.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/molecularSurfaceGrid.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SOLVATION/molecularSurfaceGrid.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/molecularSurfaceGrid.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/molecularSurfaceGrid.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/molecularSurfaceGrid.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/molecularSurfaceGrid.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/molecularSurfaceGrid.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/molecularSurfaceGrid.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/molecularSurfaceGrid.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/molecularSurfaceGrid.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/molecularSurfaceGrid.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/molecularSurfaceGrid.h:19, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/molecularSurfaceGrid.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/molecularSurfaceGrid.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/molecularSurfaceGrid.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/molecularSurfaceGrid.C:8: /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/molecularSurfaceGrid.C: In function 'BALL::TRegularData3D* BALL::calculateSESGrid(const Vector3&, const Vector3&, float, const BALL::System&, float)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/molecularSurfaceGrid.C:165:3: note: in expansion of macro 'BALL_FOREACH_ATOM' 165 | BALL_FOREACH_ATOM(system, atom_iterator) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/molecularSurfaceGrid.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/molecularSurfaceGrid.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/molecularSurfaceGrid.C:8: /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/molecularSurfaceGrid.C: In function 'BALL::TRegularData3D* BALL::calculateSASGrid(const Vector3&, const Vector3&, float, const BALL::System&, float)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/molecularSurfaceGrid.C:358:3: note: in expansion of macro 'BALL_FOREACH_ATOM' 358 | BALL_FOREACH_ATOM(system, atom_iterator) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/molecularSurfaceGrid.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/molecularSurfaceGrid.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/ooiEnergy.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SOLVATION/ooiEnergy.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/ooiEnergy.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/geometricProperties.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/ooiEnergy.C:13: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionPredicate.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionTree.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionParser.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expression.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/ruleEvaluator.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/ruleProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/typeRuleProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/ooiEnergy.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/ooiEnergy.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/geometricProperties.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/ooiEnergy.C:13: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionPredicate.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionTree.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionParser.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expression.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/ruleEvaluator.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/ruleProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/typeRuleProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/ooiEnergy.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/ooiEnergy.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/geometricProperties.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/ooiEnergy.C:13: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionPredicate.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionTree.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionParser.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expression.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/ruleEvaluator.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/ruleProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/typeRuleProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/ooiEnergy.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/ooiEnergy.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/ooiEnergy.C: In function 'double BALL::calculateOoiEnergy(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/ooiEnergy.C:277:34: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 277 | for (atom_it = atoms.beginAtom(); +atom_it; ++atom_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionPredicate.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionTree.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionParser.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expression.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/ruleEvaluator.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/ruleProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/typeRuleProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/ooiEnergy.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/ooiEnergy.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/ooiEnergy.C: In function 'double BALL::calculateOoiEnergy(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/ooiEnergy.C:277:34: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 277 | for (atom_it = atoms.beginAtom(); +atom_it; ++atom_it) | ^ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/PCMCavFreeEnergyProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SOLVATION/PCMCavFreeEnergyProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/PCMCavFreeEnergyProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/PCMCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/PCMCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/PCMCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/PCMCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/PCMCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/PCMCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/PCMCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/PCMCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/PCMCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/PCMCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/PCMCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/PCMCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/pierottiCavFreeEnergyProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SOLVATION/pierottiCavFreeEnergyProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pierottiCavFreeEnergyProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/pierottiCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pierottiCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/pierottiCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pierottiCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/pierottiCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pierottiCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/pierottiCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pierottiCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/pierottiCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pierottiCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/pierottiCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pierottiCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/pair6_12InteractionEnergyProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SOLVATION/pair6_12InteractionEnergyProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pair6_12InteractionEnergyProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/pair6_12InteractionEnergyProcessor.h:23, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pair6_12InteractionEnergyProcessor.C:14: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/surface.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pair6_12InteractionEnergyProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/pair6_12InteractionEnergyProcessor.h:23, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pair6_12InteractionEnergyProcessor.C:14: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/surface.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pair6_12InteractionEnergyProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/pair6_12InteractionEnergyProcessor.h:23, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pair6_12InteractionEnergyProcessor.C:14: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/surface.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pair6_12InteractionEnergyProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pair6_12InteractionEnergyProcessor.C: In member function 'virtual bool BALL::Pair6_12InteractionEnergyProcessor::finish()': /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pair6_12InteractionEnergyProcessor.C:406:48: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 406 | for (solute_iterator = fragment_->beginAtom(); +solute_iterator; | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/surface.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pair6_12InteractionEnergyProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/pair6_12RDFIntegrator.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SOLVATION/pair6_12RDFIntegrator.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pair6_12RDFIntegrator.C [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/pairExpInteractionEnergyProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SOLVATION/pairExpInteractionEnergyProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pairExpInteractionEnergyProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/pairExpInteractionEnergyProcessor.h:27, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pairExpInteractionEnergyProcessor.C:12: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/surface.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pairExpInteractionEnergyProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/pairExpInteractionEnergyProcessor.h:27, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pairExpInteractionEnergyProcessor.C:12: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/surface.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pairExpInteractionEnergyProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/pairExpInteractionEnergyProcessor.h:27, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pairExpInteractionEnergyProcessor.C:12: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/surface.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pairExpInteractionEnergyProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pairExpInteractionEnergyProcessor.C: In member function 'virtual bool BALL::PairExpInteractionEnergyProcessor::finish()': /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pairExpInteractionEnergyProcessor.C:315:48: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 315 | for (solute_iterator = fragment_->beginAtom(); +solute_iterator; | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/surface.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pairExpInteractionEnergyProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/pairExpRDFIntegrator.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SOLVATION/pairExpRDFIntegrator.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/pairExpRDFIntegrator.C [ 71%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/poissonBoltzmann.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SOLVATION/poissonBoltzmann.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/poissonBoltzmann.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/poissonBoltzmann.h:21, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/poissonBoltzmann.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/regularData3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/poissonBoltzmann.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/poissonBoltzmann.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/poissonBoltzmann.h:21, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/poissonBoltzmann.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/regularData3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/poissonBoltzmann.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/poissonBoltzmann.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/poissonBoltzmann.h:21, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/poissonBoltzmann.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/regularData3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/poissonBoltzmann.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/poissonBoltzmann.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/poissonBoltzmann.C:15: /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/poissonBoltzmann.C: In member function 'bool BALL::FDPB::setupAtomArray(BALL::System&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/poissonBoltzmann.C:267:3: note: in expansion of macro 'BALL_FOREACH_ATOM' 267 | BALL_FOREACH_ATOM(system, atom_iterator) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/regularData3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/poissonBoltzmann.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/poissonBoltzmann.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/poissonBoltzmann.C:15: /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/poissonBoltzmann.C: In member function 'bool BALL::FDPB::setupAtomArray(BALL::System&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/poissonBoltzmann.C:267:3: note: in expansion of macro 'BALL_FOREACH_ATOM' 267 | BALL_FOREACH_ATOM(system, atom_iterator) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/forwardIterator.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashSet.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:21, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/regularData3D.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/poissonBoltzmann.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/poissonBoltzmann.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/baseIterator.h: In instantiation of 'BALL::BaseIterator& BALL::BaseIterator::operator=(const BALL::BaseIterator&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/forwardIterator.h:63:68: required from 'BALL::ConstForwardIterator& BALL::ConstForwardIterator::operator=(const BALL::ConstForwardIterator&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/forwardIterator.h:237:76: required from 'BALL::ForwardIterator& BALL::ForwardIterator::operator=(const BALL::ForwardIterator&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]' /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/poissonBoltzmann.C:571:35: required from here /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/baseIterator.h:111:12: warning: implicitly-declared 'BALL::HashGridBox3 >::BoxIteratorTraits& BALL::HashGridBox3 >::BoxIteratorTraits::operator=(const BALL::HashGridBox3 >::BoxIteratorTraits&)' is deprecated [-Wdeprecated-copy] 111 | traits_ = iterator.traits_; | ~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/poissonBoltzmann.C:13: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:209:4: note: because 'BALL::HashGridBox3 >::BoxIteratorTraits' has user-provided 'BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3::BoxIteratorTraits&, bool) [with Item = BALL::TVector4]' 209 | BoxIteratorTraits(const BoxIteratorTraits& traits, bool /* deep */ = true) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h: In instantiation of 'BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::TVector4; BALL::Index = int]': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1516:17: required from 'bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::TVector4; BALL::Position = unsigned int]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:563:21: required from 'void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = BALL::TVector4; BALL::Position = unsigned int]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:206:13: required from 'BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = BALL::TVector4]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/baseIterator.h:190:23: required from 'BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/forwardIterator.h:128:67: required from 'BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/forwardIterator.h:298:20: required from 'BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/forwardIterator.h:309:19: required from 'static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:332:29: required from 'BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = BALL::TVector4; BALL::HashGridBox3::BoxIterator = BALL::ForwardIterator >, BALL::HashGridBox3 >, unsigned int, BALL::HashGridBox3 >::BoxIteratorTraits>]' /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/poissonBoltzmann.C:571:35: required from here /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1726:46: warning: comparison of integer expressions of different signedness: 'int' and 'BALL::Size' {aka 'unsigned int'} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/reissCavFreeEnergyProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SOLVATION/reissCavFreeEnergyProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/reissCavFreeEnergyProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/reissCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/reissCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/reissCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/reissCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/reissCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/reissCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/reissCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/reissCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/reissCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/reissCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/reissCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/reissCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/solventDescriptor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SOLVATION/solventDescriptor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/solventDescriptor.C [ 71%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/solventParameter.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SOLVATION/solventParameter.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/solventParameter.C [ 71%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/uhligCavFreeEnergyProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/SOLVATION/uhligCavFreeEnergyProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/uhligCavFreeEnergyProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/uhligCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/uhligCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/uhligCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/uhligCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/uhligCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/uhligCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/uhligCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/uhligCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/uhligCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/uhligCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/uhligCavFreeEnergyProcessor.h:15, from /build/ball-1.5.0+git20180813.37fc53c/source/SOLVATION/uhligCavFreeEnergyProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:3: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C: In member function 'bool BALL::BondOrderAssignment::apply()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:64:4: note: in expansion of macro 'BALL_FOREACH_BOND' 64 | BALL_FOREACH_BOND(*ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:3: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C: In member function 'bool BALL::BondOrderAssignment::apply()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:64:4: note: in expansion of macro 'BALL_FOREACH_BOND' 64 | BALL_FOREACH_BOND(*ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:64:4: note: in expansion of macro 'BALL_FOREACH_BOND' 64 | BALL_FOREACH_BOND(*ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:3: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C: In member function 'bool BALL::BondOrderAssignment::apply()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:64:4: note: in expansion of macro 'BALL_FOREACH_BOND' 64 | BALL_FOREACH_BOND(*ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:87:25: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 87 | a_it = ac->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:88:27: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 88 | b_it = a_it->beginBond(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:3: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:89:4: note: in expansion of macro 'BALL_FOREACH_ATOM' 89 | BALL_FOREACH_ATOM(*ac, a_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In member function 'virtual bool BALL::FPTBondOrderStrategy::readOptions(const BALL::Options&)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:30:56: warning: unused parameter 'options' [-Wunused-parameter] 30 | bool FPTBondOrderStrategy::readOptions(const Options& options) | ~~~~~~~~~~~~~~~^~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In member function 'virtual void BALL::FPTBondOrderStrategy::init()': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:69:13: warning: unused variable 'result' [-Wunused-variable] 69 | Penalty result = bond_assignments[i]->compute(); | ^~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:3: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In member function 'virtual boost::shared_ptr BALL::FPTBondOrderStrategy::computeNextSolution()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:104:4: note: in expansion of macro 'BALL_FOREACH_BOND' 104 | BALL_FOREACH_BOND(*abop->getAtomContainer(), at_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:3: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In member function 'virtual boost::shared_ptr BALL::FPTBondOrderStrategy::computeNextSolution()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:104:4: note: in expansion of macro 'BALL_FOREACH_BOND' 104 | BALL_FOREACH_BOND(*abop->getAtomContainer(), at_it, bond_it) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:104:4: note: in expansion of macro 'BALL_FOREACH_BOND' 104 | BALL_FOREACH_BOND(*abop->getAtomContainer(), at_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:3: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In member function 'virtual boost::shared_ptr BALL::FPTBondOrderStrategy::computeNextSolution()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:104:4: note: in expansion of macro 'BALL_FOREACH_BOND' 104 | BALL_FOREACH_BOND(*abop->getAtomContainer(), at_it, bond_it) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In member function 'void BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_::computeJoinBag(BALL::FPTBondOrderStrategy::TreeDecompositionBag&, BALL::FPTBondOrderStrategy::DPTable_&, BALL::FPTBondOrderStrategy::DPTable_&, BALL::FPTBondOrderStrategy::AdditionalBagProperties_&)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:853:32: warning: implicitly-declared 'BALL::FPTBondOrderStrategy::DPConfig_::DPConfig_(const BALL::FPTBondOrderStrategy::DPConfig_&)' is deprecated [-Wdeprecated-copy] 853 | DPConfig_ config = *match->first; | ^~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:245:35: note: because 'BALL::FPTBondOrderStrategy::DPConfig_' has user-provided 'BALL::FPTBondOrderStrategy::DPConfig_& BALL::FPTBondOrderStrategy::DPConfig_::operator=(const BALL::FPTBondOrderStrategy::DPConfig_&)' 245 | FPTBondOrderStrategy::DPConfig_& FPTBondOrderStrategy::DPConfig_::operator = (DPConfig_ const& copy) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In copy constructor 'BALL::FPTBondOrderStrategy::BackTrackingState_::BackTrackingState_(const BALL::FPTBondOrderStrategy::BackTrackingState_&)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:1213:21: warning: implicitly-declared 'BALL::FPTBondOrderStrategy::DPConfig_::DPConfig_(const BALL::FPTBondOrderStrategy::DPConfig_&)' is deprecated [-Wdeprecated-copy] 1213 | index(other.index) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:245:35: note: because 'BALL::FPTBondOrderStrategy::DPConfig_' has user-provided 'BALL::FPTBondOrderStrategy::DPConfig_& BALL::FPTBondOrderStrategy::DPConfig_::operator=(const BALL::FPTBondOrderStrategy::DPConfig_&)' 245 | FPTBondOrderStrategy::DPConfig_& FPTBondOrderStrategy::DPConfig_::operator = (DPConfig_ const& copy) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In member function 'void BALL::FPTBondOrderStrategy::DPBackTracking_::visitIntroduce(BALL::FPTBondOrderStrategy::BackTrackingState_&, BALL::FPTBondOrderStrategy::DPBackTracking_::TreeDecompositionBag&, BALL::FPTBondOrderStrategy::DPTable_&)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:1525:41: warning: implicitly-declared 'BALL::FPTBondOrderStrategy::DPConfig_::DPConfig_(const BALL::FPTBondOrderStrategy::DPConfig_&)' is deprecated [-Wdeprecated-copy] 1525 | DPConfig_ antecessor = table.begin()->first; | ^~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:245:35: note: because 'BALL::FPTBondOrderStrategy::DPConfig_' has user-provided 'BALL::FPTBondOrderStrategy::DPConfig_& BALL::FPTBondOrderStrategy::DPConfig_::operator=(const BALL::FPTBondOrderStrategy::DPConfig_&)' 245 | FPTBondOrderStrategy::DPConfig_& FPTBondOrderStrategy::DPConfig_::operator = (DPConfig_ const& copy) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In member function 'void BALL::FPTBondOrderStrategy::DPBackTracking_::visitForget(BALL::FPTBondOrderStrategy::BackTrackingState_&, BALL::FPTBondOrderStrategy::DPBackTracking_::TreeDecompositionBag&, BALL::FPTBondOrderStrategy::DPTable_&)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:1722:26: warning: implicitly-declared 'BALL::FPTBondOrderStrategy::DPConfig_::DPConfig_(const BALL::FPTBondOrderStrategy::DPConfig_&)' is deprecated [-Wdeprecated-copy] 1722 | DPConfig_ test_entry = successor; | ^~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:245:35: note: because 'BALL::FPTBondOrderStrategy::DPConfig_' has user-provided 'BALL::FPTBondOrderStrategy::DPConfig_& BALL::FPTBondOrderStrategy::DPConfig_::operator=(const BALL::FPTBondOrderStrategy::DPConfig_&)' 245 | FPTBondOrderStrategy::DPConfig_& FPTBondOrderStrategy::DPConfig_::operator = (DPConfig_ const& copy) | ^~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C: In member function 'bool BALL::PartialBondOrderAssignment::estimatePenalty_(bool, BALL::PartialBondOrderAssignment::HEURISTIC_INDEX)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C:226:32: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 226 | for (b_it = a_it->beginBond(); +b_it; b_it++) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C: In member function 'bool BALL::PartialBondOrderAssignment::estimatePenalty_(bool, BALL::PartialBondOrderAssignment::HEURISTIC_INDEX)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C:226:32: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 226 | for (b_it = a_it->beginBond(); +b_it; b_it++) | ^ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/addHydrogenProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/addHydrogenProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/addHydrogenProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/addHydrogenProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/addHydrogenProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/processor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/addHydrogenProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:3: note: in expansion of macro 'BALL_CREATE' 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C:12: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/processor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/addHydrogenProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C:12: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:34: note: because 'BALL::MMFF94StretchParameters' has user-provided 'const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)' 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/processor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/addHydrogenProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:3: note: in expansion of macro 'BALL_CREATE' 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C:12: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:31: note: because 'BALL::MMFF94BendParameters' has user-provided 'const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)' 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/processor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/addHydrogenProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94BendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:3: note: in expansion of macro 'BALL_CREATE' 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C:12: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:38: note: because 'BALL::MMFF94StretchBendParameters' has user-provided 'const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)' 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/processor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/addHydrogenProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:3: note: in expansion of macro 'BALL_CREATE' 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C:12: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:34: note: because 'BALL::MMFF94TorsionParameters' has user-provided 'const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)' 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/processor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/addHydrogenProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:3: note: in expansion of macro 'BALL_CREATE' 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C:12: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:32: note: because 'BALL::MMFF94PlaneParameters' has user-provided 'const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)' 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/processor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/addHydrogenProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:3: note: in expansion of macro 'BALL_CREATE' 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C:12: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:30: note: because 'BALL::MMFF94VDWParameters' has user-provided 'const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)' 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/processor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/addHydrogenProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:3: note: in expansion of macro 'BALL_CREATE' 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: warning: implicitly-declared 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C:12: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:29: note: because 'BALL::MMFF94ESParameters' has user-provided 'const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)' 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:20: warning: implicitly-declared 'constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)' is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:31: note: because 'BALL::MMFF94ParametersBase' has user-provided 'const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)' 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:20, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/processor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/addHydrogenProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/addHydrogenProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function 'virtual void* BALL::MMFF94ESParameters::create(bool, bool) const': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h:73:31: note: synthesized method 'BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)' first required here 73 | ptr = (void*)new name(*this);\ | ^ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:3: note: in expansion of macro 'BALL_CREATE' 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/analyticalSES.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/analyticalSES.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/analyticalSES.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/analyticalSES.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/analyticalSES.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/analyticalSES.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/analyticalSES.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/analyticalSES.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/analyticalSES.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/assignBondOrderProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/assignBondOrderProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/kernel.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/kernel.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/kernel.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/kernel.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/kernel.h:16, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/kernel.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C: In member function 'virtual BALL::Processor::Result BALL::AssignBondOrderProcessor::operator()(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:594:51: warning: comparison of integer expressions of different signedness: 'BALL::Size' {aka 'unsigned int'} and 'int' [-Wsign-compare] 594 | && ((getNumberOfComputedSolutions() < max_number_of_solutions_) || (!max_number_of_solutions_)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C: In member function 'bool BALL::AssignBondOrderProcessor::readAtomPenalties_()': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:667:29: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 667 | for (unsigned int i= 0; i < entries.length(); i++) | ~~^~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:705:33: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 705 | for (unsigned int k = 0; k < penalties.length(); k++) | ~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/kernel.h:28, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C: In member function 'bool BALL::AssignBondOrderProcessor::precomputeBondLengthPenalties_()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:774:4: note: in expansion of macro 'BALL_FOREACH_BOND' 774 | BALL_FOREACH_BOND(*ac_, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/kernel.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/kernel.h:28, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C: In member function 'bool BALL::AssignBondOrderProcessor::precomputeBondLengthPenalties_()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:774:4: note: in expansion of macro 'BALL_FOREACH_BOND' 774 | BALL_FOREACH_BOND(*ac_, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:774:4: note: in expansion of macro 'BALL_FOREACH_BOND' 774 | BALL_FOREACH_BOND(*ac_, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/kernel.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/kernel.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/kernel.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/kernel.h:28, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C: In member function 'bool BALL::AssignBondOrderProcessor::precomputeBondLengthPenalties_()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:774:4: note: in expansion of macro 'BALL_FOREACH_BOND' 774 | BALL_FOREACH_BOND(*ac_, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:799:10: warning: variable 'min_order' set but not used [-Wunused-but-set-variable] 799 | Size min_order = 0; | ^~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/kernel.h:28, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C: In member function 'void BALL::AssignBondOrderProcessor::storeOriginalConfiguration_()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:1187:3: note: in expansion of macro 'BALL_FOREACH_BOND' 1187 | BALL_FOREACH_BOND(*ac_, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/kernel.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/kernel.h:28, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:1187:3: note: in expansion of macro 'BALL_FOREACH_BOND' 1187 | BALL_FOREACH_BOND(*ac_, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/kernel.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/kernel.h:28, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C: In member function 'float BALL::AssignBondOrderProcessor::evaluatePenalty(BALL::AtomContainer*)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:1449:5: note: in expansion of macro 'BALL_FOREACH_BOND' 1449 | BALL_FOREACH_BOND(*ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/kernel.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/kernel.h:28, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:1449:5: note: in expansion of macro 'BALL_FOREACH_BOND' 1449 | BALL_FOREACH_BOND(*ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/kernel.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/assignBondOrderProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/atomBijection.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/atomBijection.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/atomBijection.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/atomBijection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/atomBijection.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/atomBijection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/atomBijection.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/atomBijection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/atomBijection.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/atomBijection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/atomBijection.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/atomBijection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/atomBijection.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/atomBijection.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/atomBijection.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/atomTyper.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/atomTyper.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/atomTyper.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/atomTyper.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/atomTyper.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/atomTyper.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/atomTyper.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/atomTyper.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/atomTyper.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/binaryFingerprintMethods.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/binaryFingerprintMethods.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/binaryFingerprintMethods.C /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/binaryFingerprintMethods.C: In static member function 'static bool BALL::BinaryFingerprintMethods::parseBinaryFingerprint(const BALL::String&, std::vector&, unsigned int, const char*)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/binaryFingerprintMethods.C:293:36: warning: catching polymorphic type 'class BALL::Exception::InvalidFormat' by value [-Wcatch-value=] 293 | catch (Exception::InvalidFormat e) | ^ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/bindingPocketProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/bindingPocketProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/bindingPocketProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/bindingPocketProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/bindingPocketProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/bindingPocketProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/bindingPocketProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/bindingPocketProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/bindingPocketProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/bindingPocketProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/bindingPocketProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/bindingPocketProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/bindingPocketProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/bindingPocketProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/bindingPocketProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/bindingPocketProcessor.C: In member function 'virtual BALL::Processor::Result BALL::BindingPocketProcessor::operator()(BALL::Composite&)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/bindingPocketProcessor.C:239:22: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 239 | ai = s->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/bindingPocketProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/bindingPocketProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/bindingPocketProcessor.C: In member function 'virtual BALL::Processor::Result BALL::BindingPocketProcessor::operator()(BALL::Composite&)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/bindingPocketProcessor.C:239:22: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 239 | ai = s->beginAtom(); | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/bindingPocketProcessor.C:245:22: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 245 | ai = s->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/bindingPocketProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/bindingPocketProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/bindingPocketProcessor.C:251:22: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 251 | ai = s->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/bindingPocketProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/bindingPocketProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/bindingPocketProcessor.h:21, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/bindingPocketProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h: In instantiation of 'BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::BindingPocketProcessor::Sphere_; BALL::Index = int]': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1516:17: required from 'bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::BindingPocketProcessor::Sphere_; BALL::Position = unsigned int]' /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/bindingPocketProcessor.C:398:50: required from here /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1726:46: warning: comparison of integer expressions of different signedness: 'int' and 'BALL::Size' {aka 'unsigned int'} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h:23, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h:36, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/processor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/bindingPocketProcessor.h:5, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/bindingPocketProcessor.C:1: /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, double>}; _Tp = std::pair, double>; _Alloc = std::allocator, double> >]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector, double> >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'virtual bool BALL::BindingPocketProcessor::finish()': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/buildBondsProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/buildBondsProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/buildBondsProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/buildBondsProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/buildBondsProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/buildBondsProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/buildBondsProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/buildBondsProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C: In member function 'virtual BALL::Processor::Result BALL::BuildBondsProcessor::operator()(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:90:4: note: in expansion of macro 'BALL_FOREACH_ATOM' 90 | BALL_FOREACH_ATOM(ac, ait) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/buildBondsProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C: In member function 'virtual BALL::Processor::Result BALL::BuildBondsProcessor::operator()(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:90:4: note: in expansion of macro 'BALL_FOREACH_ATOM' 90 | BALL_FOREACH_ATOM(ac, ait) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C: In member function 'BALL::Size BALL::BuildBondsProcessor::buildBondsHashGrid3_(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:90:55: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 90 | for (first_atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:129:4: note: in expansion of macro 'BALL_FOREACH_ATOM_PAIR' 129 | BALL_FOREACH_ATOM_PAIR(ac, ait1, ait2) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/buildBondsProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:92:58: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 92 | for (second_atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:129:4: note: in expansion of macro 'BALL_FOREACH_ATOM_PAIR' 129 | BALL_FOREACH_ATOM_PAIR(ac, ait1, ait2) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/buildBondsProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C: In member function 'void BALL::BuildBondsProcessor::estimateBondOrders_(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:258:3: note: in expansion of macro 'BALL_FOREACH_BOND' 258 | BALL_FOREACH_BOND(ac, ait, bit) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/buildBondsProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:258:3: note: in expansion of macro 'BALL_FOREACH_BOND' 258 | BALL_FOREACH_BOND(ac, ait, bit) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/buildBondsProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/buildBondsProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/buildBondsProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C: In member function 'void BALL::BuildBondsProcessor::estimateBondOrders_(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:258:3: note: in expansion of macro 'BALL_FOREACH_BOND' 258 | BALL_FOREACH_BOND(ac, ait, bit) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C: In member function 'void BALL::BuildBondsProcessor::deleteOverestimatedBonds_(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:333:3: note: in expansion of macro 'BALL_FOREACH_ATOM' 333 | BALL_FOREACH_ATOM(ac, ait) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/buildBondsProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h: In instantiation of 'BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1516:17: required from 'bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::Atom*; BALL::Position = unsigned int]' /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/buildBondsProcessor.C:165:36: required from here /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1726:46: warning: comparison of integer expressions of different signedness: 'int' and 'BALL::Size' {aka 'unsigned int'} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/connectedComponentsProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/connectedComponentsProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/connectedComponentsProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/connectedComponentsProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/connectedComponentsProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/connectedComponentsProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/connectedComponentsProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/connectedComponentsProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C: In member function 'virtual BALL::Processor::Result BALL::ConnectedComponentsProcessor::operator()(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C:50:3: note: in expansion of macro 'BALL_FOREACH_ATOM' 50 | BALL_FOREACH_ATOM(ac, atom_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/connectedComponentsProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C: In member function 'virtual BALL::Processor::Result BALL::ConnectedComponentsProcessor::operator()(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C:50:3: note: in expansion of macro 'BALL_FOREACH_ATOM' 50 | BALL_FOREACH_ATOM(ac, atom_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:141:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 141 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C:66:3: note: in expansion of macro 'BALL_FOREACH_INTRABOND' 66 | BALL_FOREACH_INTRABOND(ac, atom_it, bond_iter) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/connectedComponentsProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:143:51: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 143 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C:66:3: note: in expansion of macro 'BALL_FOREACH_INTRABOND' 66 | BALL_FOREACH_INTRABOND(ac, atom_it, bond_iter) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/connectedComponentsProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/connectedComponentsProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/connectedComponentsProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C:1: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C: In member function 'virtual BALL::Processor::Result BALL::ConnectedComponentsProcessor::operator()(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:143:51: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 143 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connectedComponentsProcessor.C:66:3: note: in expansion of macro 'BALL_FOREACH_INTRABOND' 66 | BALL_FOREACH_INTRABOND(ac, atom_it, bond_iter) | ^~~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/connolly.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/connolly.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/connolly.C [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/defaultProcessors.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/defaultProcessors.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/defaultProcessors.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/defaultProcessors.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/defaultProcessors.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/defaultProcessors.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/defaultProcessors.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/defaultProcessors.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/defaultProcessors.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/defaultProcessors.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/defaultProcessors.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/defaultProcessors.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/disulfidBondProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/disulfidBondProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/disulfidBondProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/disulfidBondProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/disulfidBondProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/disulfidBondProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/disulfidBondProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/disulfidBondProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C:15: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C: In member function 'virtual BALL::Processor::Result BALL::DisulfidBondProcessor::operator()(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C:43:3: note: in expansion of macro 'BALL_FOREACH_BOND' 43 | BALL_FOREACH_BOND(ac, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/disulfidBondProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C:15: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C: In member function 'virtual BALL::Processor::Result BALL::DisulfidBondProcessor::operator()(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C:43:3: note: in expansion of macro 'BALL_FOREACH_BOND' 43 | BALL_FOREACH_BOND(ac, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C:43:3: note: in expansion of macro 'BALL_FOREACH_BOND' 43 | BALL_FOREACH_BOND(ac, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/disulfidBondProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/disulfidBondProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/disulfidBondProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C:15: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C: In member function 'virtual BALL::Processor::Result BALL::DisulfidBondProcessor::operator()(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C:43:3: note: in expansion of macro 'BALL_FOREACH_BOND' 43 | BALL_FOREACH_BOND(ac, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C: In member function 'bool BALL::DisulfidBondProcessor::connect(BALL::Atom*, BALL::Atom*, bool)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C:121:31: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 121 | b_it = atom2->beginBond(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/disulfidBondProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C: In member function 'bool BALL::DisulfidBondProcessor::connect(BALL::Residue*, BALL::Residue*, bool)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C:194:31: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 194 | a_it = residue2->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/disulfidBondProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C: In member function 'bool BALL::DisulfidBondProcessor::disconnect(BALL::Residue*, BALL::Residue*)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C:338:32: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 338 | a_it = residue2->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/disulfidBondProcessor.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/disulfidBondProcessor.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/DNAMutator.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/DNAMutator.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/DNAMutator.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/DNAMutator.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/DNAMutator.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/DNAMutator.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/DNAMutator.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/DNAMutator.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/DNAMutator.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/DNAMutator.C:11: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/DNAMutator.h:12, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/DNAMutator.C:9: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/fragmentDB.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/fragmentDB.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/fragmentDB.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/fragmentDB.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/fragmentDB.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/fragmentDB.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/fragmentDB.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/fragmentDB.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C: In member function 'void BALL::FragmentDB::parseBonds_(BALL::ResourceEntry&, BALL::Fragment&)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C:306:39: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 306 | for (atom_it = fragment.beginAtom(); +atom_it; ++atom_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/fragmentDB.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C: In member function 'void BALL::FragmentDB::parseBonds_(BALL::ResourceEntry&, BALL::Fragment&)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C:306:39: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 306 | for (atom_it = fragment.beginAtom(); +atom_it; ++atom_it) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C: In member function 'void BALL::FragmentDB::parseDelete_(BALL::ResourceEntry&, BALL::Fragment&)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C:385:39: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 385 | for (atom_it = fragment.beginAtom(); +atom_it; ++atom_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/fragmentDB.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C: In member function 'void BALL::FragmentDB::parseRename_(BALL::ResourceEntry&, BALL::Fragment&)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C:423:39: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 423 | for (atom_it = fragment.beginAtom(); +atom_it; ++atom_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/fragmentDB.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C: In member function 'void BALL::FragmentDB::NormalizeNamesProcessor::countHits_(BALL::HashMap*, int>&, const BALL::Fragment*, BALL::FragmentDB::NormalizeNamesProcessor::CountingMode)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C:1239:35: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 1239 | for (atom_it = frag->beginAtom(); +atom_it; ++atom_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/fragmentDB.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C: In member function 'BALL::Size BALL::FragmentDB::BuildBondsProcessor::buildFragmentBonds(BALL::Fragment&, const BALL::Fragment&) const': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C:1483:49: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 1483 | for (tplate_bond_it = tplate_atom->beginBond(); +tplate_bond_it; ++tplate_bond_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/fragmentDB.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/fragmentDB.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C: In member function 'BALL::Size BALL::FragmentDB::BuildBondsProcessor::buildFragmentBonds(BALL::Fragment&, const BALL::Fragment&) const': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/fragmentDB.C:1483:49: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 1483 | for (tplate_bond_it = tplate_atom->beginBond(); +tplate_bond_it; ++tplate_bond_it) | ^ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/geometricProperties.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/geometricProperties.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/geometricProperties.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/geometricProperties.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/geometricProperties.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/geometricProperties.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/geometricProperties.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/geometricProperties.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/geometricProperties.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/geometricProperties.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/geometricProperties.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/geometricProperties.h:25, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/geometricProperties.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/geometricProperties.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/geometricProperties.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/geometricProperties.C: In member function 'virtual bool BALL::FragmentDistanceCollector::finish()': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/geometricProperties.C:199:60: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 199 | for (composite_it = reference_composite_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/geometricProperties.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/geometricProperties.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/geometricProperties.C:223:50: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 223 | for (atom_iterator2 = mol_fragment->beginAtom(); +atom_iterator2; ++ atom_iterator2) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/geometricProperties.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/geometricProperties.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/geometricProperties.C:238:52: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 238 | for (atom_iterator2 = mol_fragment->beginAtom(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/geometricProperties.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/geometricProperties.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/geometricTransformations.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/geometricTransformations.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/geometricTransformations.C [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/graphEdge.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/graphEdge.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/graphEdge.C [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/graphFace.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/graphFace.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/graphFace.C [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/graphVertex.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/graphVertex.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/graphVertex.C [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/HBondProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/HBondProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/HBondProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/HBondProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/HBondProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/HBondProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/HBondProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/HBondProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C: In member function 'virtual BALL::Processor::Result BALL::HBondProcessor::operator()(BALL::Composite&)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:101:25: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 101 | ri = s->beginResidue(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/HBondProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C: In member function 'virtual BALL::Processor::Result BALL::HBondProcessor::operator()(BALL::Composite&)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:101:25: note: synthesized method 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)' first required here 101 | ri = s->beginResidue(); | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:107:25: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 107 | ri = s->beginResidue(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/HBondProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:113:25: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 113 | ri = s->beginResidue(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/HBondProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:129:4: note: in expansion of macro 'BALL_FOREACH_BOND' 129 | BALL_FOREACH_BOND(*ri_del, ai, bi) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/HBondProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:8: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C: In member function 'virtual BALL::Processor::Result BALL::HBondProcessor::operator()(BALL::Composite&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:129:4: note: in expansion of macro 'BALL_FOREACH_BOND' 129 | BALL_FOREACH_BOND(*ri_del, ai, bi) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:129:4: note: in expansion of macro 'BALL_FOREACH_BOND' 129 | BALL_FOREACH_BOND(*ri_del, ai, bi) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/HBondProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/HBondProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/HBondProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:8: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C: In member function 'virtual BALL::Processor::Result BALL::HBondProcessor::operator()(BALL::Composite&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:129:4: note: in expansion of macro 'BALL_FOREACH_BOND' 129 | BALL_FOREACH_BOND(*ri_del, ai, bi) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C: In member function 'bool BALL::HBondProcessor::finishWishartEtAl_()': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:525:41: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 525 | for (bi = acceptors_[a]->beginBond(); +bi; ++bi) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/HBondProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:533:38: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 533 | for (bi = donors_[d]->beginBond(); +bi; ++bi) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/HBondProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:5: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h: In instantiation of 'BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::HBondProcessor::ResidueData*; BALL::Index = int]': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1516:17: required from 'bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::HBondProcessor::ResidueData*; BALL::Position = unsigned int]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:563:21: required from 'void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = BALL::HBondProcessor::ResidueData*; BALL::Position = unsigned int]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:206:13: required from 'BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = BALL::HBondProcessor::ResidueData*]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/baseIterator.h:190:23: required from 'BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/forwardIterator.h:128:67: required from 'BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/forwardIterator.h:298:20: required from 'BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/forwardIterator.h:309:19: required from 'static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]' /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:332:29: required from 'BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = BALL::HBondProcessor::ResidueData*; BALL::HashGridBox3::BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]' /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/HBondProcessor.C:350:68: required from here /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h:1726:46: warning: comparison of integer expressions of different signedness: 'int' and 'BALL::Size' {aka 'unsigned int'} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/hybridisationProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/hybridisationProcessor.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/hybridisationProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/hybridisationProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/hybridisationProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/hybridisationProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/hybridisationProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/hybridisationProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C: In member function 'double BALL::HybridisationProcessor::AverageBondAngle_(BALL::Atom*)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:112:29: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 112 | for (b_it1 = a->beginBond(); +b_it1; ++b_it1) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/hybridisationProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/hybridisationProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/hybridisationProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C: In member function 'double BALL::HybridisationProcessor::AverageBondAngle_(BALL::Atom*)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:112:29: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 112 | for (b_it1 = a->beginBond(); +b_it1; ++b_it1) | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:114:12: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 114 | b_it2 = b_it1; | ^~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/hybridisationProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C: In member function 'virtual BALL::Processor::Result BALL::HybridisationProcessor::operator()(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:147:4: note: in expansion of macro 'BALL_FOREACH_ATOM' 147 | BALL_FOREACH_ATOM(ac, ait) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/hybridisationProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C: In member function 'virtual BALL::Processor::Result BALL::HybridisationProcessor::operator()(BALL::AtomContainer&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:147:4: note: in expansion of macro 'BALL_FOREACH_ATOM' 147 | BALL_FOREACH_ATOM(ac, ait) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:217:28: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 217 | for (ait = ac.beginAtom(); +ait; ++ait) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/hybridisationProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:365:28: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 365 | for (ait = ac.beginAtom(); +ait; ++ait) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/hybridisationProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:371:33: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 371 | for (b_it = ait->beginBond(); +b_it; ++b_it) | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/hybridisationProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:410:4: note: in expansion of macro 'BALL_FOREACH_ATOM' 410 | BALL_FOREACH_ATOM(ac, ait) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/hybridisationProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:7: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:418:4: note: in expansion of macro 'BALL_FOREACH_ATOM' 418 | BALL_FOREACH_ATOM(ac, ait) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/hybridisationProcessor.h:13, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/hybridisationProcessor.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/kekulizer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/kekulizer.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C:7: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C: In member function 'bool BALL::Kekuliser::setup(BALL::Molecule&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C:197:2: note: in expansion of macro 'BALL_FOREACH_BOND' 197 | BALL_FOREACH_BOND(mol, ait, bit) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C:7: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C: In member function 'bool BALL::Kekuliser::setup(BALL::Molecule&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:108:49: note: synthesized method 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' first required here 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C:197:2: note: in expansion of macro 'BALL_FOREACH_BOND' 197 | BALL_FOREACH_BOND(mol, ait, bit) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C:197:2: note: in expansion of macro 'BALL_FOREACH_BOND' 197 | BALL_FOREACH_BOND(mol, ait, bit) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: warning: implicitly-declared 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:47:15: note: because 'BALL::ConstRandomAccessIterator' has user-provided 'BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:24:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h: In member function 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:413:8: note: synthesized method 'BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)' first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C:7: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C: In member function 'bool BALL::Kekuliser::setup(BALL::Molecule&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C:197:2: note: in expansion of macro 'BALL_FOREACH_BOND' 197 | BALL_FOREACH_BOND(mol, ait, bit) | ^~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C: In member function 'bool BALL::Kekuliser::fixAromaticRings_()': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C:374:25: warning: implicitly-declared 'BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)' is deprecated [-Wdeprecated-copy] 374 | bit = atom.beginBond(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:17, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h:437:15: note: because 'BALL::RandomAccessIterator' has user-provided 'BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]' 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C:7: /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C: In member function 'void BALL::Kekuliser::collectAromaticAtoms_()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)' is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C:587:2: note: in expansion of macro 'BALL_FOREACH_ATOM' 587 | BALL_FOREACH_ATOM(*molecule_, ait) | ^~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h:25, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h:9, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/kekulizer.C:8: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator, BALL::AtomIteratorTraits>' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/molecularSimilarity.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/build/ball-1.5.0+git20180813.37fc53c/build/BALL_autogen/include -I/build/ball-1.5.0+git20180813.37fc53c/include -I/build/ball-1.5.0+git20180813.37fc53c/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -fdebug-prefix-map=/build/ball-1.5.0+git20180813.37fc53c=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -o CMakeFiles/BALL.dir/source/STRUCTURE/molecularSimilarity.C.o -c /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/molecularSimilarity.C In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/molecularSimilarity.h:22, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/molecularSimilarity.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/molecularSimilarity.h:22, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/molecularSimilarity.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h: In member function 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:258:8: warning: implicitly-declared 'BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:46:15: note: because 'BALL::ConstBidirectionalIterator' has user-provided 'BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/molecularSimilarity.h:22, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/molecularSimilarity.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:262:32: note: synthesized method 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:286:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/molecularSimilarity.h:22, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/molecularSimilarity.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:15, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/molecularSimilarity.h:22, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/molecularSimilarity.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h: In member function 'void BALL::CompositeIteratorTraits::toRBegin()': /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h:343:48: warning: implicitly-declared 'BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)' is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ In file included from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h:17, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h:13, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h:11, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h:9, from /build/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/molecularSimilarity.h:22, from /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/molecularSimilarity.C:6: /build/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h:283:15: note: because 'BALL::BidirectionalIterator' has user-provided 'BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]' 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/molecularSimilarity.C: In member function 'void BALL::MolecularSimilarity::generateFingerprint(BALL::Molecule&, std::vector&)': /build/ball-1.5.0+git20180813.37fc53c/source/STRUCTURE/molecularSimilarity.C:405:26: warning: catching polymorphic type 'class BALL::Exception::GeneralException' by value [-Wcatch-value=] 405 | catch(BALL::Exception::GeneralException) | ^~~~~~~~~~~~~~~~ Sat Mar 18 18:44:57 UTC 2023 - pbuilder was killed by timeout after 18h.