I: pbuilder: network access will be disabled during build I: Current time: Sun Aug 22 06:56:37 +14 2021 I: pbuilder-time-stamp: 1629564997 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [racon_1.4.20-1.dsc] I: copying [./racon_1.4.20.orig.tar.gz] I: copying [./racon_1.4.20-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.sY2UsQPG/trustedkeys.kbx': General error gpgv: Signature made Wed Jan 20 00:04:56 2021 +14 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./racon_1.4.20-1.dsc dpkg-source: info: extracting racon in racon-1.4.20 dpkg-source: info: unpacking racon_1.4.20.orig.tar.gz dpkg-source: info: unpacking racon_1.4.20-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/31276/tmp/hooks/D01_modify_environment starting debug: Running on codethink10-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/31276/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/31276/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/var/lib/jenkins HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=31276 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.KqRd9dJF08/pbuilderrc_E5Ig --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.KqRd9dJF08/b2 --logfile b2/build.log racon_1.4.20-1.dsc' SUDO_GID=117 SUDO_UID=110 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root USERNAME=root _='I: set' http_proxy=http://192.168.101.16:3128 I: uname -a Linux i-capture-the-hostname 4.15.0-154-generic #161-Ubuntu SMP Fri Jul 30 13:01:15 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Aug 5 10:25 bash -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash -rwxr-xr-x 1 root root 101384 Sep 23 2020 date -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd -rwxr-xr-x 1 root root 89824 Sep 23 2020 df -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir -rwxr-xr-x 1 root root 76152 Jul 29 09:09 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 64856 Jul 29 09:09 findmnt -rwsr-xr-x 1 root root 34824 Feb 27 06:12 fusermount -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe -rwxr-xr-x 1 root root 93744 Mar 3 13:30 gzip -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln -rwxr-xr-x 1 root root 52720 Feb 8 2020 login -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls -rwxr-xr-x 1 root root 161960 Jul 29 09:09 lsblk -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 51368 Jul 29 09:09 more -rwsr-xr-x 1 root root 51360 Jul 29 09:09 mount -rwxr-xr-x 1 root root 14496 Jul 29 09:09 mountpoint -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Aug 22 06:56 sh -> bash lrwxrwxrwx 1 root root 4 Aug 21 23:24 sh.distrib -> dash -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty -rwsr-xr-x 1 root root 67776 Jul 29 09:09 su -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync -rwxr-xr-x 1 root root 535768 Feb 17 2021 tar -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch -rwxr-xr-x 1 root root 31512 Sep 23 2020 true -rwxr-xr-x 1 root root 14264 Feb 27 06:12 ulockmgr_server -rwsr-xr-x 1 root root 30880 Jul 29 09:09 umount -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir -rwxr-xr-x 1 root root 59584 Jul 29 09:09 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew I: user script /srv/workspace/pbuilder/31276/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev (>= 3.0.12), libcereal-dev, libedlib-dev, libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev (>= 3.0.12); however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev; however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbioparser-dev{a} libbrotli1{a} libcereal-dev{a} libcurl4{a} libdebhelper-perl{a} libedlib-dev{a} libedlib0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgtest-dev{a} libicu67{a} libjsoncpp24{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps8{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1{a} libsub-override-perl{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 27.5 MB of archives. After unpacking 112 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8 [142 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libncurses6 arm64 6.2+20201114-2 [93.2 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libprocps8 arm64 2:3.3.17-5 [61.9 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 procps arm64 2:3.3.17-5 [497 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 cmake-data all 3.18.4-2 [1725 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libarchive13 arm64 3.4.3-2+b1 [320 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3 [222 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 libssh2-1 arm64 1.9.0-2 [150 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libcurl4 arm64 7.74.0-1.3+b1 [321 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libjsoncpp24 arm64 1.9.4-4 [72.5 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 librhash0 arm64 1.4.1-2 [127 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libuv1 arm64 1.40.0-2 [126 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 cmake arm64 3.18.4-2 [3673 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 googletest all 1.10.0.20201025-1.1 [629 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libbioparser-dev all 3.0.12-1 [7168 B] Get: 54 http://deb.debian.org/debian bullseye/main arm64 rapidjson-dev all 1.1.0+dfsg2-7 [98.9 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libcereal-dev all 1.3.0+dfsg-1 [210 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libedlib0 arm64 1.2.6-1 [15.2 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libedlib-dev arm64 1.2.6-1 [17.5 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libgtest-dev arm64 1.10.0.20201025-1.1 [221 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libspoa7.0.0 arm64 4.0.7+ds-1+b1 [46.4 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 libspoa-dev arm64 4.0.7+ds-1+b1 [6992 B] Get: 61 http://deb.debian.org/debian bullseye/main arm64 libthread-pool-dev all 3.0.2-1 [4376 B] Get: 62 http://deb.debian.org/debian bullseye/main arm64 rampler arm64 2.0.0-1 [20.5 kB] Fetched 27.5 MB in 4s (6537 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_arm64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../05-libncurses6_6.2+20201114-2_arm64.deb ... Unpacking libncurses6:arm64 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:arm64. Preparing to unpack .../06-libprocps8_2%3a3.3.17-5_arm64.deb ... Unpacking libprocps8:arm64 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../07-procps_2%3a3.3.17-5_arm64.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../08-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../09-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../10-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../11-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../12-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../13-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../14-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../15-autoconf_2.69-14_all.deb ... 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Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package hostname: Temporary failure in name resolution I: Running cd /build/racon-1.4.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.4.20-1_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.4.20-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/racon-1.4.20' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found GTest: /usr/lib/aarch64-linux-gnu/libgtest.a -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/racon-1.4.20/obj-aarch64-linux-gnu # Somehow the means in the patch for CMakeLists.txt to replace -lpthread by -pthread to not work # Just hack it here sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/racon-1.4.20' dh_auto_build -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/racon-1.4.20/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/racon-1.4.20 -B/build/racon-1.4.20/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/racon-1.4.20/obj-aarch64-linux-gnu/CMakeFiles /build/racon-1.4.20/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/racon-1.4.20/obj-aarch64-linux-gnu' make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/depend make[3]: Entering directory '/build/racon-1.4.20/obj-aarch64-linux-gnu' cd /build/racon-1.4.20/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/racon-1.4.20 /build/racon-1.4.20 /build/racon-1.4.20/obj-aarch64-linux-gnu /build/racon-1.4.20/obj-aarch64-linux-gnu /build/racon-1.4.20/obj-aarch64-linux-gnu/CMakeFiles/racon_test.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/racon-1.4.20/obj-aarch64-linux-gnu' cd /build/racon-1.4.20/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/racon-1.4.20 /build/racon-1.4.20 /build/racon-1.4.20/obj-aarch64-linux-gnu /build/racon-1.4.20/obj-aarch64-linux-gnu /build/racon-1.4.20/obj-aarch64-linux-gnu/CMakeFiles/racon.dir/DependInfo.cmake --color= Dependee "/build/racon-1.4.20/obj-aarch64-linux-gnu/CMakeFiles/racon.dir/DependInfo.cmake" is newer than depender "/build/racon-1.4.20/obj-aarch64-linux-gnu/CMakeFiles/racon.dir/depend.internal". 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-I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-aarch64-linux-gnu/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -o CMakeFiles/racon_test.dir/src/logger.cpp.o -c /build/racon-1.4.20/src/logger.cpp /usr/bin/c++ -DRACON_VERSION=\"v1.4.20\" -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-aarch64-linux-gnu/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/racon-1.4.20/src/polisher.cpp [ 57%] Building CXX object CMakeFiles/racon_test.dir/src/overlap.cpp.o /usr/bin/c++ -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-aarch64-linux-gnu/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -o CMakeFiles/racon_test.dir/src/overlap.cpp.o -c /build/racon-1.4.20/src/overlap.cpp [ 42%] Building CXX object CMakeFiles/racon.dir/src/main.cpp.o [ 57%] Building CXX object CMakeFiles/racon_test.dir/src/polisher.cpp.o /usr/bin/c++ -DRACON_VERSION=\"v1.4.20\" -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-aarch64-linux-gnu/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -o CMakeFiles/racon.dir/src/main.cpp.o -c /build/racon-1.4.20/src/main.cpp /usr/bin/c++ -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-aarch64-linux-gnu/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -o CMakeFiles/racon_test.dir/src/polisher.cpp.o -c 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-DRACON_VERSION=\"v1.4.20\" -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-aarch64-linux-gnu/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/racon-1.4.20/src/window.cpp [ 85%] Building CXX object CMakeFiles/racon_test.dir/src/window.cpp.o /usr/bin/c++ -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-aarch64-linux-gnu/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -o CMakeFiles/racon_test.dir/src/window.cpp.o -c /build/racon-1.4.20/src/window.cpp [ 92%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -rdynamic -pthread CMakeFiles/racon.dir/src/main.cpp.o CMakeFiles/racon.dir/src/logger.cpp.o CMakeFiles/racon.dir/src/polisher.cpp.o CMakeFiles/racon.dir/src/overlap.cpp.o CMakeFiles/racon.dir/src/sequence.cpp.o CMakeFiles/racon.dir/src/window.cpp.o -o bin/racon -lspoa -ledlib -lz make[3]: Leaving directory '/build/racon-1.4.20/obj-aarch64-linux-gnu' [ 92%] Built target racon [100%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/racon_test.dir/test/racon_test.cpp.o CMakeFiles/racon_test.dir/src/logger.cpp.o CMakeFiles/racon_test.dir/src/polisher.cpp.o CMakeFiles/racon_test.dir/src/overlap.cpp.o CMakeFiles/racon_test.dir/src/sequence.cpp.o CMakeFiles/racon_test.dir/src/window.cpp.o -o bin/racon_test -lspoa -ledlib /usr/lib/aarch64-linux-gnu/libgtest_main.a -lz /usr/lib/aarch64-linux-gnu/libgtest.a -pthread make[3]: Leaving directory '/build/racon-1.4.20/obj-aarch64-linux-gnu' [100%] Built target racon_test make[2]: Leaving directory '/build/racon-1.4.20/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/racon-1.4.20/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/racon-1.4.20/obj-aarch64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/racon-1.4.20' cd test && ../obj-*/bin/racon_test Running main() from /build/googletest-GKBoPn/googletest-1.10.0.20201025/googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (6 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (8 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (2 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (6 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (6 ms) [----------] 5 tests from RaconInitializeTest (28 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.001073 s [racon::Polisher::initialize] loaded sequences 0.125902 s [racon::Polisher::initialize] loaded overlaps 0.000649 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.180879 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.254729 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.277810 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.313811 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.349809 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.366082 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.433845 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.453819 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.481812 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.565008 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.565061 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.577835 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.617811 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.657817 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.677819 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.721846 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.761801 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.797812 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.829802 s [racon::Polisher::initialize] aligning overlaps [====================] 0.877821 s [racon::Polisher::initialize] transformed data into windows 0.004481 s [racon::Polisher::polish] generating consensus [=> ] 0.151297 s [racon::Polisher::polish] generating consensus [==> ] 0.271284 s [racon::Polisher::polish] generating consensus [===> ] 0.398953 s [racon::Polisher::polish] generating consensus [====> ] 0.491259 s [racon::Polisher::polish] generating consensus [=====> ] 0.503267 s [racon::Polisher::polish] generating consensus [======> ] 0.567256 s [racon::Polisher::polish] generating consensus [=======> ] 0.639270 s [racon::Polisher::polish] generating consensus [========> ] 0.671308 s [racon::Polisher::polish] generating consensus [=========> ] 0.767269 s [racon::Polisher::polish] generating consensus [==========> ] 0.903240 s [racon::Polisher::polish] generating consensus [===========> ] 1.047263 s [racon::Polisher::polish] generating consensus [============> ] 1.127249 s [racon::Polisher::polish] generating consensus [=============> ] 1.451307 s [racon::Polisher::polish] generating consensus [==============> ] 1.691270 s [racon::Polisher::polish] generating consensus [===============> ] 1.811257 s [racon::Polisher::polish] generating consensus [================> ] 1.891247 s [racon::Polisher::polish] generating consensus [=================> ] 2.031261 s [racon::Polisher::polish] generating consensus [==================> ] 2.175246 s [racon::Polisher::polish] generating consensus [===================>] 2.243882 s [racon::Polisher::polish] generating consensus [====================] 2.830918 s [racon::Polisher::] total = 3.871991 s [ OK ] RaconPolishingTest.ConsensusWithQualities (3885 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.000966 s [racon::Polisher::initialize] loaded sequences 0.080751 s [racon::Polisher::initialize] loaded overlaps 0.000570 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.097522 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.145539 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.185525 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.249536 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.305525 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.349539 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.409536 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.461527 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.506252 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.550417 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.589956 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.645851 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.713782 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.749543 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.806706 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.864208 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.913532 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.965983 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.029526 s [racon::Polisher::initialize] aligning overlaps [====================] 1.109597 s [racon::Polisher::initialize] transformed data into windows 0.000915 s [racon::Polisher::polish] generating consensus [=> ] 0.250822 s [racon::Polisher::polish] generating consensus [==> ] 0.498301 s [racon::Polisher::polish] generating consensus [===> ] 0.710777 s [racon::Polisher::polish] generating consensus [====> ] 0.886794 s [racon::Polisher::polish] generating consensus [=====> ] 0.932344 s [racon::Polisher::polish] generating consensus [======> ] 1.038788 s [racon::Polisher::polish] generating consensus [=======> ] 1.130754 s [racon::Polisher::polish] generating consensus [========> ] 1.326821 s [racon::Polisher::polish] generating consensus [=========> ] 1.439437 s [racon::Polisher::polish] generating consensus [==========> ] 1.738766 s [racon::Polisher::polish] generating consensus [===========> ] 1.982857 s [racon::Polisher::polish] generating consensus [============> ] 2.410795 s [racon::Polisher::polish] generating consensus [=============> ] 2.638791 s [racon::Polisher::polish] generating consensus [==============> ] 3.038776 s [racon::Polisher::polish] generating consensus [===============> ] 3.406784 s [racon::Polisher::polish] generating consensus [================> ] 3.706808 s [racon::Polisher::polish] generating consensus [=================> ] 4.054784 s [racon::Polisher::polish] generating consensus [==================> ] 4.242782 s [racon::Polisher::polish] generating consensus [===================>] 4.514797 s [racon::Polisher::polish] generating consensus [====================] 5.634899 s [racon::Polisher::] total = 6.861089 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (6874 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.000980 s [racon::Polisher::initialize] loaded sequences 0.146538 s [racon::Polisher::initialize] loaded overlaps 0.039697 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.008053 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.008440 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.008830 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.009270 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.009579 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.009894 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.010388 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.010722 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.011140 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.011507 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.012810 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.012979 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.013484 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.013779 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.014267 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.014791 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.015058 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.015510 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.016689 s [racon::Polisher::initialize] aligning overlaps [====================] 0.016718 s [racon::Polisher::initialize] transformed data into windows 0.004647 s [racon::Polisher::polish] generating consensus [=> ] 0.274318 s [racon::Polisher::polish] generating consensus [==> ] 0.382285 s [racon::Polisher::polish] generating consensus [===> ] 0.518271 s [racon::Polisher::polish] generating consensus [====> ] 0.602315 s [racon::Polisher::polish] generating consensus [=====> ] 0.646264 s [racon::Polisher::polish] generating consensus [======> ] 0.686466 s [racon::Polisher::polish] generating consensus [=======> ] 0.738272 s [racon::Polisher::polish] generating consensus [========> ] 0.818365 s [racon::Polisher::polish] generating consensus [=========> ] 0.919704 s [racon::Polisher::polish] generating consensus [==========> ] 1.066274 s [racon::Polisher::polish] generating consensus [===========> ] 1.338282 s [racon::Polisher::polish] generating consensus [============> ] 1.470315 s [racon::Polisher::polish] generating consensus [=============> ] 1.858280 s [racon::Polisher::polish] generating consensus [==============> ] 2.086287 s [racon::Polisher::polish] generating consensus [===============> ] 2.290284 s [racon::Polisher::polish] generating consensus [================> ] 2.490287 s [racon::Polisher::polish] generating consensus [=================> ] 2.605319 s [racon::Polisher::polish] generating consensus [==================> ] 2.746268 s [racon::Polisher::polish] generating consensus [===================>] 2.938279 s [racon::Polisher::polish] generating consensus [====================] 3.602416 s [racon::Polisher::] total = 3.845415 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (3859 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.000980 s [racon::Polisher::initialize] loaded sequences 0.071614 s [racon::Polisher::initialize] loaded overlaps 0.087310 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.024817 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.025636 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.026492 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.027375 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.028028 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.028740 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.029613 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.046347 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.046397 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.046417 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.046434 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.046452 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.046468 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.046485 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.046501 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.046519 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.046537 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.046553 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.046571 s [racon::Polisher::initialize] aligning overlaps [====================] 0.046588 s [racon::Polisher::initialize] transformed data into windows 0.001013 s [racon::Polisher::polish] generating consensus [=> ] 0.314603 s [racon::Polisher::polish] generating consensus [==> ] 0.502574 s [racon::Polisher::polish] generating consensus [===> ] 0.646541 s [racon::Polisher::polish] generating consensus [====> ] 0.790685 s [racon::Polisher::polish] generating consensus [=====> ] 0.842858 s [racon::Polisher::polish] generating consensus [======> ] 0.938545 s [racon::Polisher::polish] generating consensus [=======> ] 1.001847 s [racon::Polisher::polish] generating consensus [========> ] 1.110607 s [racon::Polisher::polish] generating consensus [=========> ] 1.210531 s [racon::Polisher::polish] generating consensus [==========> ] 1.394549 s [racon::Polisher::polish] generating consensus [===========> ] 1.618572 s [racon::Polisher::polish] generating consensus [============> ] 1.890536 s [racon::Polisher::polish] generating consensus [=============> ] 2.346538 s [racon::Polisher::polish] generating consensus [==============> ] 2.726542 s [racon::Polisher::polish] generating consensus [===============> ] 3.030536 s [racon::Polisher::polish] generating consensus [================> ] 3.310552 s [racon::Polisher::polish] generating consensus [=================> ] 3.558544 s [racon::Polisher::polish] generating consensus [==================> ] 3.586529 s [racon::Polisher::polish] generating consensus [===================>] 3.758542 s [racon::Polisher::polish] generating consensus [====================] 4.820211 s [racon::Polisher::] total = 5.057470 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (5062 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.001024 s [racon::Polisher::initialize] loaded sequences 0.099061 s [racon::Polisher::initialize] loaded overlaps 0.000888 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.063562 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.112557 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.143543 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.195556 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.239547 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.259546 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.303555 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.351552 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.401495 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.455569 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.483395 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.524004 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.599553 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.619563 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.663577 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.731565 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.775554 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.835570 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.875555 s [racon::Polisher::initialize] aligning overlaps [====================] 0.943568 s [racon::Polisher::initialize] transformed data into windows 0.004292 s [racon::Polisher::polish] generating consensus [=> ] 0.971439 s [racon::Polisher::polish] generating consensus [==> ] 0.971513 s [racon::Polisher::polish] generating consensus [===> ] 1.183425 s [racon::Polisher::polish] generating consensus [====> ] 1.183510 s [racon::Polisher::polish] generating consensus [=====> ] 1.331411 s [racon::Polisher::polish] generating consensus [======> ] 1.423402 s [racon::Polisher::polish] generating consensus [=======> ] 1.576448 s [racon::Polisher::polish] generating consensus [========> ] 1.643775 s [racon::Polisher::polish] generating consensus [=========> ] 1.927409 s [racon::Polisher::polish] generating consensus [==========> ] 2.195414 s [racon::Polisher::polish] generating consensus [===========> ] 2.583439 s [racon::Polisher::polish] generating consensus [============> ] 2.987424 s [racon::Polisher::polish] generating consensus [=============> ] 3.707404 s [racon::Polisher::polish] generating consensus [==============> ] 3.867415 s [racon::Polisher::polish] generating consensus [===============> ] 4.423403 s [racon::Polisher::polish] generating consensus [================> ] 4.423510 s [racon::Polisher::polish] generating consensus [=================> ] 5.033571 s [racon::Polisher::polish] generating consensus [==================> ] 5.033627 s [racon::Polisher::polish] generating consensus [===================>] 5.447397 s [racon::Polisher::polish] generating consensus [====================] 6.508103 s [racon::Polisher::] total = 7.586523 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (7604 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.001407 s [racon::Polisher::initialize] loaded sequences 0.156130 s [racon::Polisher::initialize] loaded overlaps 0.000603 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.082505 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.146523 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.186498 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.234569 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.262578 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.302517 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.354517 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.394516 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.450004 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.486504 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.522493 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.571253 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.626508 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.662510 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.698495 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.766516 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.803816 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.862162 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.967477 s [racon::Polisher::initialize] aligning overlaps [====================] 0.986512 s [racon::Polisher::initialize] transformed data into windows 0.004934 s [racon::Polisher::polish] generating consensus [=> ] 0.186787 s [racon::Polisher::polish] generating consensus [==> ] 0.350801 s [racon::Polisher::polish] generating consensus [===> ] 0.494778 s [racon::Polisher::polish] generating consensus [====> ] 0.598813 s [racon::Polisher::polish] generating consensus [=====> ] 0.626761 s [racon::Polisher::polish] generating consensus [======> ] 0.702764 s [racon::Polisher::polish] generating consensus [=======> ] 0.758775 s [racon::Polisher::polish] generating consensus [========> ] 0.954838 s [racon::Polisher::polish] generating consensus [=========> ] 0.954911 s [racon::Polisher::polish] generating consensus [==========> ] 1.082784 s [racon::Polisher::polish] generating consensus [===========> ] 1.270766 s [racon::Polisher::polish] generating consensus [============> ] 1.482789 s [racon::Polisher::polish] generating consensus [=============> ] 1.751858 s [racon::Polisher::polish] generating consensus [==============> ] 2.094796 s [racon::Polisher::polish] generating consensus [===============> ] 2.266785 s [racon::Polisher::polish] generating consensus [================> ] 2.466770 s [racon::Polisher::polish] generating consensus [=================> ] 2.614786 s [racon::Polisher::polish] generating consensus [==================> ] 2.733467 s [racon::Polisher::polish] generating consensus [===================>] 2.926785 s [racon::Polisher::polish] generating consensus [====================] 3.562856 s [racon::Polisher::] total = 4.738506 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (4741 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.118427 s [racon::Polisher::initialize] loaded sequences 0.082388 s [racon::Polisher::initialize] loaded overlaps 0.024949 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.089816 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.137819 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.157824 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.185817 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.229845 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.249823 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.277833 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.301838 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.349822 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.389815 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.421817 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.449811 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.513831 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.557823 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.609836 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.661839 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.705823 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.765832 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.817848 s [racon::Polisher::initialize] aligning overlaps [====================] 0.933861 s [racon::Polisher::initialize] transformed data into windows 0.009446 s [racon::Polisher::polish] generating consensus [=> ] 0.142353 s [racon::Polisher::polish] generating consensus [==> ] 0.247499 s [racon::Polisher::polish] generating consensus [===> ] 0.370452 s [racon::Polisher::polish] generating consensus [====> ] 0.370856 s [racon::Polisher::polish] generating consensus [=====> ] 0.458457 s [racon::Polisher::polish] generating consensus [======> ] 0.522586 s [racon::Polisher::polish] generating consensus [=======> ] 0.614367 s [racon::Polisher::polish] generating consensus [========> ] 0.614877 s [racon::Polisher::polish] generating consensus [=========> ] 0.786252 s [racon::Polisher::polish] generating consensus [==========> ] 0.862238 s [racon::Polisher::polish] generating consensus [===========> ] 0.930260 s [racon::Polisher::polish] generating consensus [============> ] 0.946436 s [racon::Polisher::polish] generating consensus [=============> ] 1.054513 s [racon::Polisher::polish] generating consensus [==============> ] 1.054947 s [racon::Polisher::polish] generating consensus [===============> ] 1.218514 s [racon::Polisher::polish] generating consensus [================> ] 1.218872 s [racon::Polisher::polish] generating consensus [=================> ] 1.494449 s [racon::Polisher::polish] generating consensus [==================> ] 1.610400 s [racon::Polisher::polish] generating consensus [===================>] 1.746419 s [racon::Polisher::polish] generating consensus [====================] 1.798522 s [racon::Polisher::] total = 2.969340 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (2973 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.117164 s [racon::Polisher::initialize] loaded sequences 0.094240 s [racon::Polisher::initialize] loaded overlaps 0.026368 s [racon::Polisher::initialize] aligning overlaps [=> ] 1.048510 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.724519 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.368565 s [racon::Polisher::initialize] aligning overlaps [====> ] 3.292541 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.976521 s [racon::Polisher::initialize] aligning overlaps [======> ] 4.575270 s [racon::Polisher::initialize] aligning overlaps [=======> ] 5.392532 s [racon::Polisher::initialize] aligning overlaps [========> ] 6.360512 s [racon::Polisher::initialize] aligning overlaps [=========> ] 7.312874 s [racon::Polisher::initialize] aligning overlaps [==========> ] 8.156519 s [racon::Polisher::initialize] aligning overlaps [===========> ] 8.960550 s [racon::Polisher::initialize] aligning overlaps [============> ] 9.996614 s [racon::Polisher::initialize] aligning overlaps [=============> ] 11.044511 s [racon::Polisher::initialize] aligning overlaps [==============> ] 11.972514 s [racon::Polisher::initialize] aligning overlaps [===============> ] 13.006035 s [racon::Polisher::initialize] aligning overlaps [================> ] 13.901746 s [racon::Polisher::initialize] aligning overlaps [=================> ] 14.908520 s [racon::Polisher::initialize] aligning overlaps [==================> ] 15.908513 s [racon::Polisher::initialize] aligning overlaps [===================>] 16.892739 s [racon::Polisher::initialize] aligning overlaps [====================] 17.780543 s [racon::Polisher::initialize] transformed data into windows 0.157165 s [racon::Polisher::polish] generating consensus [=> ] 5.250026 s [racon::Polisher::polish] generating consensus [==> ] 9.298022 s [racon::Polisher::polish] generating consensus [===> ] 13.530146 s [racon::Polisher::polish] generating consensus [====> ] 16.618146 s [racon::Polisher::polish] generating consensus [=====> ] 20.382202 s [racon::Polisher::polish] generating consensus [======> ] 24.362031 s [racon::Polisher::polish] generating consensus [=======> ] 28.166044 s [racon::Polisher::polish] generating consensus [========> ] 31.790038 s [racon::Polisher::polish] generating consensus [=========> ] 36.302023 s [racon::Polisher::polish] generating consensus [==========> ] 41.958031 s [racon::Polisher::polish] generating consensus [===========> ] 46.826141 s [racon::Polisher::polish] generating consensus [============> ] 51.811783 s [racon::Polisher::polish] generating consensus [=============> ] 56.171844 s [racon::Polisher::polish] generating consensus [==============> ] 61.134028 s [racon::Polisher::polish] generating consensus [===============> ] 65.993372 s [racon::Polisher::polish] generating consensus [================> ] 68.734127 s [racon::Polisher::polish] generating consensus [=================> ] 74.950035 s [racon::Polisher::polish] generating consensus [==================> ] 80.574154 s [racon::Polisher::polish] generating consensus [===================>] 86.226024 s [racon::Polisher::polish] generating consensus [====================] 91.510130 s [racon::Polisher::] total = 109.698724 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (109701 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.073046 s [racon::Polisher::initialize] loaded sequences 0.075609 s [racon::Polisher::initialize] loaded overlaps 0.045384 s [racon::Polisher::initialize] aligning overlaps [=> ] 1.165266 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.955937 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.671393 s [racon::Polisher::initialize] aligning overlaps [====> ] 3.739387 s [racon::Polisher::initialize] aligning overlaps [=====> ] 4.591539 s [racon::Polisher::initialize] aligning overlaps [======> ] 5.307430 s [racon::Polisher::initialize] aligning overlaps [=======> ] 6.291378 s [racon::Polisher::initialize] aligning overlaps [========> ] 7.483400 s [racon::Polisher::initialize] aligning overlaps [=========> ] 8.711377 s [racon::Polisher::initialize] aligning overlaps [==========> ] 9.816571 s [racon::Polisher::initialize] aligning overlaps [===========> ] 10.675387 s [racon::Polisher::initialize] aligning overlaps [============> ] 11.891388 s [racon::Polisher::initialize] aligning overlaps [=============> ] 13.119926 s [racon::Polisher::initialize] aligning overlaps [==============> ] 14.171397 s [racon::Polisher::initialize] aligning overlaps [===============> ] 15.535363 s [racon::Polisher::initialize] aligning overlaps [================> ] 16.789498 s [racon::Polisher::initialize] aligning overlaps [=================> ] 17.955394 s [racon::Polisher::initialize] aligning overlaps [==================> ] 19.231913 s [racon::Polisher::initialize] aligning overlaps [===================>] 20.621802 s [racon::Polisher::initialize] aligning overlaps [====================] 21.811428 s [racon::Polisher::initialize] transformed data into windows 0.066907 s [racon::Polisher::polish] generating consensus [=> ] 8.773462 s [racon::Polisher::polish] generating consensus [==> ] 14.837479 s [racon::Polisher::polish] generating consensus [===> ] 21.793442 s [racon::Polisher::polish] generating consensus [====> ] 26.985544 s [racon::Polisher::polish] generating consensus [=====> ] 33.401455 s [racon::Polisher::polish] generating consensus [======> ] 41.761449 s [racon::Polisher::polish] generating consensus [=======> ] 50.169439 s [racon::Polisher::polish] generating consensus [========> ] 56.677436 s [racon::Polisher::polish] generating consensus [=========> ] 64.377902 s [racon::Polisher::polish] generating consensus [==========> ] 74.093472 s [racon::Polisher::polish] generating consensus [===========> ] 83.169547 s [racon::Polisher::polish] generating consensus [============> ] 92.177454 s [racon::Polisher::polish] generating consensus [=============> ] 101.901437 s [racon::Polisher::polish] generating consensus [==============> ] 111.501442 s [racon::Polisher::polish] generating consensus [===============> ] 119.853453 s [racon::Polisher::polish] generating consensus [================> ] 124.529553 s [racon::Polisher::polish] generating consensus [=================> ] 134.661448 s [racon::Polisher::polish] generating consensus [==================> ] 144.153552 s [racon::Polisher::polish] generating consensus [===================>] 152.601439 s [racon::Polisher::polish] generating consensus [====================] 159.716026 s [racon::Polisher::] total = 181.797784 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (181802 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.116919 s [racon::Polisher::initialize] loaded sequences 0.092222 s [racon::Polisher::initialize] loaded overlaps 0.024710 s [racon::Polisher::initialize] aligning overlaps [=> ] 1.313424 s [racon::Polisher::initialize] aligning overlaps [==> ] 2.077400 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.793403 s [racon::Polisher::initialize] aligning overlaps [====> ] 3.809396 s [racon::Polisher::initialize] aligning overlaps [=====> ] 4.641402 s [racon::Polisher::initialize] aligning overlaps [======> ] 5.377417 s [racon::Polisher::initialize] aligning overlaps [=======> ] 6.299775 s [racon::Polisher::initialize] aligning overlaps [========> ] 7.525407 s [racon::Polisher::initialize] aligning overlaps [=========> ] 8.649410 s [racon::Polisher::initialize] aligning overlaps [==========> ] 9.553409 s [racon::Polisher::initialize] aligning overlaps [===========> ] 10.277400 s [racon::Polisher::initialize] aligning overlaps [============> ] 11.365392 s [racon::Polisher::initialize] aligning overlaps [=============> ] 12.633406 s [racon::Polisher::initialize] aligning overlaps [==============> ] 13.689143 s [racon::Polisher::initialize] aligning overlaps [===============> ] 15.070663 s [racon::Polisher::initialize] aligning overlaps [================> ] 16.121479 s [racon::Polisher::initialize] aligning overlaps [=================> ] 17.137401 s [racon::Polisher::initialize] aligning overlaps [==================> ] 18.237410 s [racon::Polisher::initialize] aligning overlaps [===================>] 19.437400 s [racon::Polisher::initialize] aligning overlaps [====================] 20.537401 s [racon::Polisher::initialize] transformed data into windows 0.142332 s [racon::Polisher::polish] generating consensus [=> ] 4.521734 s [racon::Polisher::polish] generating consensus [==> ] 8.790275 s [racon::Polisher::polish] generating consensus [===> ] 13.862366 s [racon::Polisher::polish] generating consensus [====> ] 17.626787 s [racon::Polisher::polish] generating consensus [=====> ] 22.078289 s [racon::Polisher::polish] generating consensus [======> ] 26.738287 s [racon::Polisher::polish] generating consensus [=======> ] 31.202292 s [racon::Polisher::polish] generating consensus [========> ] 34.558272 s [racon::Polisher::polish] generating consensus [=========> ] 38.822307 s [racon::Polisher::polish] generating consensus [==========> ] 43.726298 s [racon::Polisher::polish] generating consensus [===========> ] 47.894307 s [racon::Polisher::polish] generating consensus [============> ] 52.658273 s [racon::Polisher::polish] generating consensus [=============> ] 56.894300 s [racon::Polisher::polish] generating consensus [==============> ] 61.673034 s [racon::Polisher::polish] generating consensus [===============> ] 66.346304 s [racon::Polisher::polish] generating consensus [================> ] 69.170402 s [racon::Polisher::polish] generating consensus [=================> ] 74.974280 s [racon::Polisher::polish] generating consensus [==================> ] 81.062601 s [racon::Polisher::polish] generating consensus [===================>] 86.822406 s [racon::Polisher::polish] generating consensus [====================] 92.180819 s [racon::Polisher::] total = 113.105342 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (113114 ms) [----------] 10 tests from RaconPolishingTest (439615 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (439643 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/racon-1.4.20' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/build/racon-1.4.20/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/racon-1.4.20/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/racon-1.4.20 -B/build/racon-1.4.20/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/racon-1.4.20/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/racon-1.4.20/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/racon-1.4.20/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/racon-1.4.20/obj-aarch64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.4.20-1_arm64.deb'. dpkg-deb: building package 'racon' in '../racon_1.4.20-1_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../racon_1.4.20-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/31276/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/31276/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/31276 and its subdirectories I: Current time: Sun Aug 22 07:05:46 +14 2021 I: pbuilder-time-stamp: 1629565546