I: pbuilder: network access will be disabled during build I: Current time: Thu Jul 29 18:35:31 -12 2021 I: pbuilder-time-stamp: 1627626931 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pyani_0.2.10-2.dsc] I: copying [./python-pyani_0.2.10.orig.tar.gz] I: copying [./python-pyani_0.2.10-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.32Imvq7c/trustedkeys.kbx': General error gpgv: Signature made Fri Mar 20 09:27:19 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-pyani_0.2.10-2.dsc dpkg-source: info: extracting python-pyani in python-pyani-0.2.10 dpkg-source: info: unpacking python-pyani_0.2.10.orig.tar.gz dpkg-source: info: unpacking python-pyani_0.2.10-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/9575/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='9575' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.wMLxoNuJWL/pbuilderrc_Bb5c --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.wMLxoNuJWL/b1 --logfile b1/build.log python-pyani_0.2.10-2.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink16-arm64 4.15.0-151-generic #157-Ubuntu SMP Fri Jul 9 21:03:48 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 21 14:26 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 7 02:38 more -rwsr-xr-x 1 root root 51360 Feb 7 02:38 mount -rwxr-xr-x 1 root root 14496 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 27 21:24 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Feb 7 02:38 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 21:55 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 7 02:38 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/9575/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-python, python3-all-dev, python3-setuptools, python3-biopython, python3-matplotlib, python3-pandas, python3-scipy, python3-seaborn, mummer, ncbi-blast+, python3-nose dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-seaborn; however: Package python3-seaborn is not installed. pbuilder-satisfydepends-dummy depends on mummer; however: Package mummer is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on python3-nose; however: Package python3-nose is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-lyx{a} gawk{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgfortran5{a} libicu67{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblmdb0{a} libmagic-mgc{a} libmagic1{a} libmbedcrypto3{a} libmbedtls12{a} libmbedx509-0{a} libmd0{a} libmpdec3{a} libpipeline1{a} libpng16-16{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtcl8.6{a} libtiff5{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxss1{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} mummer{a} ncbi-blast+{a} ncbi-data{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-biopython{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-kiwisolver{a} python3-lib2to3{a} python3-matplotlib{a} python3-minimal{a} python3-nose{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pkg-resources{a} python3-pyparsing{a} python3-reportlab{a} python3-reportlab-accel{a} python3-scipy{a} python3-seaborn{a} python3-setuptools{a} python3-six{a} python3-tk{a} python3-tz{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} ttf-bitstream-vera{a} ucf{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python-biopython-doc python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-numexpr python3-odf python3-olefile python3-openpyxl python3-patsy python3-renderpm python3-tables python3-xlwt wget 0 packages upgraded, 129 newly installed, 0 to remove and 0 not upgraded. Need to get 87.1 MB of archives. After unpacking 364 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 readline-common all 8.1-1 [73.7 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libreadline8 arm64 8.1-1 [160 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 gawk arm64 1:5.1.0-1 [570 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-minimal arm64 3.9.2-1 [797 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 python3.9-minimal arm64 3.9.2-1 [1884 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 python3-minimal arm64 3.9.2-3 [38.2 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 media-types all 4.0.0 [30.3 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 mailcap all 3.69 [31.7 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 mime-support all 3.66 [10.9 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 libmpdec3 arm64 2.5.1-1 [84.4 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-stdlib arm64 3.9.2-1 [1658 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 python3.9 arm64 3.9.2-1 [466 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 libpython3-stdlib arm64 3.9.2-3 [21.4 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 python3 arm64 3.9.2-3 [37.9 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 ucf all 3.0043 [74.0 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 libtcl8.6 arm64 8.6.11+dfsg-1 [964 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 libpng16-16 arm64 1.6.37-3 [289 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libfreetype6 arm64 2.10.4+dfsg-1 [393 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 libfontconfig1 arm64 2.13.1-4.2 [344 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 libbsd0 arm64 0.11.3-1 [106 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 libxcb1 arm64 1.14-3 [138 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 libx11-data all 2:1.7.1-1 [310 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 libx11-6 arm64 2:1.7.1-1 [747 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 libxrender1 arm64 1:0.9.10-1 [30.4 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 libxft2 arm64 2.3.2-2 [51.3 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 libxext6 arm64 2:1.3.3-1.1 [51.6 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 x11-common all 1:7.7+22 [252 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libxss1 arm64 1:1.2.3-1 [17.8 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libtk8.6 arm64 8.6.11-2 [738 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-4.1 [540 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 blt arm64 2.5.3+dfsg-4.1 [14.9 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 68 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 71 http://deb.debian.org/debian bullseye/main arm64 python3-distutils all 3.9.2-1 [143 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 73 http://deb.debian.org/debian bullseye/main arm64 fonts-lyx all 2.3.6-1 [205 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 libblas3 arm64 3.9.0-3 [101 kB] Get: 75 http://deb.debian.org/debian bullseye/main arm64 libdeflate0 arm64 1.7-1 [47.7 kB] Get: 76 http://deb.debian.org/debian bullseye/main arm64 libexpat1-dev arm64 2.2.10-2 [126 kB] Get: 77 http://deb.debian.org/debian bullseye/main arm64 libgfortran5 arm64 10.2.1-6 [333 kB] Get: 78 http://deb.debian.org/debian bullseye/main arm64 libimagequant0 arm64 2.12.2-1.1 [30.3 kB] Get: 79 http://deb.debian.org/debian bullseye/main arm64 libjbig0 arm64 2.1-3.1+b2 [27.8 kB] Get: 80 http://deb.debian.org/debian bullseye/main arm64 libjpeg62-turbo arm64 1:2.0.6-4 [133 kB] Get: 81 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 82 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB] Get: 83 http://deb.debian.org/debian bullseye/main arm64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 84 http://deb.debian.org/debian bullseye/main arm64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 85 http://deb.debian.org/debian bullseye/main arm64 liblapack3 arm64 3.9.0-3 [1541 kB] Get: 86 http://deb.debian.org/debian bullseye/main arm64 liblbfgsb0 arm64 3.0+dfsg.3-9 [24.5 kB] Get: 87 http://deb.debian.org/debian bullseye/main arm64 liblcms2-2 arm64 2.12~rc1-2 [140 kB] Get: 88 http://deb.debian.org/debian bullseye/main arm64 liblmdb0 arm64 0.9.24-1 [43.7 kB] Get: 89 http://deb.debian.org/debian bullseye/main arm64 libmbedcrypto3 arm64 2.16.9-0.1 [211 kB] Get: 90 http://deb.debian.org/debian bullseye/main arm64 libmbedx509-0 arm64 2.16.9-0.1 [108 kB] Get: 91 http://deb.debian.org/debian bullseye/main arm64 libmbedtls12 arm64 2.16.9-0.1 [132 kB] Get: 92 http://deb.debian.org/debian bullseye/main arm64 libpython3.9 arm64 3.9.2-1 [1556 kB] Get: 93 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-dev arm64 3.9.2-1 [3835 kB] Get: 94 http://deb.debian.org/debian bullseye/main arm64 libpython3-dev arm64 3.9.2-3 [21.7 kB] Get: 95 http://deb.debian.org/debian bullseye/main arm64 libpython3-all-dev arm64 3.9.2-3 [1068 B] Get: 96 http://deb.debian.org/debian bullseye/main arm64 libwebp6 arm64 0.6.1-2.1 [244 kB] Get: 97 http://deb.debian.org/debian bullseye/main arm64 libtiff5 arm64 4.2.0-1 [276 kB] Get: 98 http://deb.debian.org/debian bullseye/main arm64 libwebpdemux2 arm64 0.6.1-2.1 [87.5 kB] Get: 99 http://deb.debian.org/debian bullseye/main arm64 libwebpmux3 arm64 0.6.1-2.1 [96.7 kB] Get: 100 http://deb.debian.org/debian bullseye/main arm64 mummer arm64 3.23+dfsg-7 [640 kB] Get: 101 http://deb.debian.org/debian bullseye/main arm64 ncbi-data all 6.1.20170106+dfsg1-9 [3556 kB] Get: 102 http://deb.debian.org/debian bullseye/main arm64 ncbi-blast+ arm64 2.11.0+ds-1 [10.2 MB] Get: 103 http://deb.debian.org/debian bullseye/main arm64 python-matplotlib-data all 3.3.4-1 [4153 kB] Get: 104 http://deb.debian.org/debian bullseye/main arm64 python3-all arm64 3.9.2-3 [1056 B] Get: 105 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Get: 106 http://deb.debian.org/debian bullseye/main arm64 python3.9-dev arm64 3.9.2-1 [515 kB] Get: 107 http://deb.debian.org/debian bullseye/main arm64 python3-dev arm64 3.9.2-3 [24.8 kB] Get: 108 http://deb.debian.org/debian bullseye/main arm64 python3-all-dev arm64 3.9.2-3 [1064 B] Get: 109 http://deb.debian.org/debian bullseye/main arm64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 110 http://deb.debian.org/debian bullseye/main arm64 python3-numpy arm64 1:1.19.5-1 [3196 kB] Get: 111 http://deb.debian.org/debian bullseye/main arm64 python3-reportlab-accel arm64 3.5.59-2 [38.6 kB] Get: 112 http://deb.debian.org/debian bullseye/main arm64 python3-pil arm64 8.1.2+dfsg-0.3 [428 kB] Get: 113 http://deb.debian.org/debian bullseye/main arm64 python3-reportlab all 3.5.59-2 [575 kB] Get: 114 http://deb.debian.org/debian bullseye/main arm64 python3-biopython arm64 1.78+dfsg-4 [1389 kB] Get: 115 http://deb.debian.org/debian bullseye/main arm64 python3-six all 1.16.0-1 [17.1 kB] Get: 116 http://deb.debian.org/debian bullseye/main arm64 python3-cycler all 0.10.0-3 [8084 B] Get: 117 http://deb.debian.org/debian bullseye/main arm64 python3-dateutil all 2.8.1-6 [79.2 kB] Get: 118 http://deb.debian.org/debian bullseye/main arm64 python3-decorator all 4.4.2-2 [15.8 kB] Get: 119 http://deb.debian.org/debian bullseye/main arm64 python3-kiwisolver arm64 1.3.1-1+b1 [51.6 kB] Get: 120 http://deb.debian.org/debian bullseye/main arm64 python3-pyparsing all 2.4.7-1 [109 kB] Get: 121 http://deb.debian.org/debian bullseye/main arm64 python3-matplotlib arm64 3.3.4-1 [4109 kB] Get: 122 http://deb.debian.org/debian bullseye/main arm64 python3-nose all 1.3.7-7 [133 kB] Get: 123 http://deb.debian.org/debian bullseye/main arm64 python3-tz all 2021.1-1 [34.8 kB] Get: 124 http://deb.debian.org/debian bullseye/main arm64 python3-pandas-lib arm64 1.1.5+dfsg-2 [2914 kB] Get: 125 http://deb.debian.org/debian bullseye/main arm64 python3-pandas all 1.1.5+dfsg-2 [2096 kB] Get: 126 http://deb.debian.org/debian bullseye/main arm64 python3-scipy arm64 1.6.0-2 [11.6 MB] Get: 127 http://deb.debian.org/debian bullseye/main arm64 python3-tk arm64 3.9.2-1 [100 kB] Get: 128 http://deb.debian.org/debian bullseye/main arm64 python3-seaborn all 0.11.1-1 [206 kB] Get: 129 http://deb.debian.org/debian bullseye/main arm64 python3-setuptools all 52.0.0-4 [366 kB] Fetched 87.1 MB in 3s (26.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../1-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_arm64.deb ... 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Unpacking libexpat1:arm64 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../python3.9-minimal_3.9.2-1_arm64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:arm64 (3.9.2-1) ... Setting up libexpat1:arm64 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20721 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_arm64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.69_all.deb ... Unpacking mailcap (3.69) ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21142 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_arm64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../003-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package ucf. Preparing to unpack .../006-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package m4. Preparing to unpack .../007-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../008-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../009-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../010-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../011-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libtcl8.6:arm64. Preparing to unpack .../012-libtcl8.6_8.6.11+dfsg-1_arm64.deb ... Unpacking libtcl8.6:arm64 (8.6.11+dfsg-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../013-libbrotli1_1.0.9-2+b2_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b2) ... Selecting previously unselected package libpng16-16:arm64. Preparing to unpack .../014-libpng16-16_1.6.37-3_arm64.deb ... Unpacking libpng16-16:arm64 (1.6.37-3) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../015-libfreetype6_2.10.4+dfsg-1_arm64.deb ... Unpacking libfreetype6:arm64 (2.10.4+dfsg-1) ... Selecting previously unselected package ttf-bitstream-vera. Preparing to unpack .../016-ttf-bitstream-vera_1.10-8.1_all.deb ... Unpacking ttf-bitstream-vera (1.10-8.1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../017-fontconfig-config_2.13.1-4.2_all.deb ... Unpacking fontconfig-config (2.13.1-4.2) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../018-libfontconfig1_2.13.1-4.2_arm64.deb ... Unpacking libfontconfig1:arm64 (2.13.1-4.2) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../019-libxau6_1%3a1.0.9-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.9-1) ... Selecting previously unselected package libmd0:arm64. Preparing to unpack .../020-libmd0_1.0.3-3_arm64.deb ... Unpacking libmd0:arm64 (1.0.3-3) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../021-libbsd0_0.11.3-1_arm64.deb ... Unpacking libbsd0:arm64 (0.11.3-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../022-libxdmcp6_1%3a1.1.2-3_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../023-libxcb1_1.14-3_arm64.deb ... Unpacking libxcb1:arm64 (1.14-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../024-libx11-data_2%3a1.7.1-1_all.deb ... Unpacking libx11-data (2:1.7.1-1) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../025-libx11-6_2%3a1.7.1-1_arm64.deb ... Unpacking libx11-6:arm64 (2:1.7.1-1) ... Selecting previously unselected package libxrender1:arm64. Preparing to unpack .../026-libxrender1_1%3a0.9.10-1_arm64.deb ... Unpacking libxrender1:arm64 (1:0.9.10-1) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../027-libxft2_2.3.2-2_arm64.deb ... Unpacking libxft2:arm64 (2.3.2-2) ... Selecting previously unselected package libxext6:arm64. Preparing to unpack .../028-libxext6_2%3a1.3.3-1.1_arm64.deb ... Unpacking libxext6:arm64 (2:1.3.3-1.1) ... Selecting previously unselected package x11-common. Preparing to unpack .../029-x11-common_1%3a7.7+22_all.deb ... Unpacking x11-common (1:7.7+22) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../030-libxss1_1%3a1.2.3-1_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1) ... Selecting previously unselected package libtk8.6:arm64. Preparing to unpack .../031-libtk8.6_8.6.11-2_arm64.deb ... Unpacking libtk8.6:arm64 (8.6.11-2) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../032-tk8.6-blt2.5_2.5.3+dfsg-4.1_arm64.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Selecting previously unselected package blt. Preparing to unpack .../033-blt_2.5.3+dfsg-4.1_arm64.deb ... Unpacking blt (2.5.3+dfsg-4.1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../034-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../035-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../036-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../037-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../038-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../039-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../040-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../041-libelf1_0.183-1_arm64.deb ... Unpacking libelf1:arm64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../042-dwz_0.13+20210201-1_arm64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../043-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../044-libxml2_2.9.10+dfsg-6.7_arm64.deb ... Unpacking libxml2:arm64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../045-gettext_0.21-4_arm64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. 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Setting up libtiff5:arm64 (4.2.0-1) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up python-matplotlib-data (3.3.4-1) ... Setting up libwebpmux3:arm64 (0.6.1-2.1) ... Setting up libbsd0:arm64 (0.11.3-1) ... Setting up mailcap (3.69) ... Setting up libelf1:arm64 (0.183-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up libpython3.9-stdlib:arm64 (3.9.2-1) ... Setting up libpython3-stdlib:arm64 (3.9.2-3) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up liblapack3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15) ... Setting up libmbedx509-0:arm64 (2.16.9-0.1) ... Setting up libwebpdemux2:arm64 (0.6.1-2.1) ... Setting up libmbedtls12:arm64 (2.16.9-0.1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dh-autoreconf (20) ... Setting up libpython3.9:arm64 (3.9.2-1) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8) ... Setting up libfreetype6:arm64 (2.10.4+dfsg-1) ... Setting up ucf (3.0043) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libx11-6:arm64 (2:1.7.1-1) ... Setting up python3.9 (3.9.2-1) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.3-9) ... Setting up libxrender1:arm64 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:arm64 (2:1.3.3-1.1) ... Setting up libpython3.9-dev:arm64 (3.9.2-1) ... Setting up python3 (3.9.2-3) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-tz (2021.1-1) ... Setting up ncbi-blast+ (2.11.0+ds-1) ... Setting up python3-six (1.16.0-1) ... Setting up python3-pil:arm64 (8.1.2+dfsg-0.3) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-cycler (0.10.0-3) ... Setting up python3-reportlab-accel:arm64 (3.5.59-2) ... Setting up python3-kiwisolver (1.3.1-1+b1) ... Setting up python3-reportlab (3.5.59-2) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up libxss1:arm64 (1:1.2.3-1) ... Setting up libfontconfig1:arm64 (2.13.1-4.2) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up libxft2:arm64 (2.3.2-2) ... Setting up libpython3-dev:arm64 (3.9.2-3) ... Setting up python3-setuptools (52.0.0-4) ... Setting up libtk8.6:arm64 (8.6.11-2) ... Setting up python3-all (3.9.2-3) ... Setting up debhelper (13.3.4) ... Setting up python3-nose (1.3.7-7) ... Setting up libpython3-all-dev:arm64 (3.9.2-3) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-biopython (1.78+dfsg-4) ... Setting up python3-all-dev (3.9.2-3) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up python3-matplotlib (3.3.4-1) ... Setting up python3-scipy (1.6.0-2) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-pandas-lib:arm64 (1.1.5+dfsg-2) ... Setting up python3-tk:arm64 (3.9.2-1) ... Setting up python3-pandas (1.1.5+dfsg-2) ... Setting up python3-seaborn (0.11.1-1) ... Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-pyani-0.2.10/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pyani_0.2.10-2_source.changes dpkg-buildpackage: info: source package python-pyani dpkg-buildpackage: info: source version 0.2.10-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sao I Kuan dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-pyani-0.2.10' dh_auto_clean I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -f pyani.egg-info/PKG-INFO pyani.egg-info/SOURCES.txt pyani.egg-info/dependency_links.txt pyani.egg-info/requires.txt pyani.egg-info/top_level.txt make[1]: Leaving directory '/build/python-pyani-0.2.10' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani copying pyani/tetra.py -> /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani copying pyani/run_sge.py -> /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani copying pyani/run_multiprocessing.py -> /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani copying pyani/pyani_tools.py -> /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani copying pyani/pyani_jobs.py -> /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani copying pyani/pyani_graphics.py -> /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani copying pyani/pyani_files.py -> /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani copying pyani/pyani_config.py -> /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani copying pyani/anim.py -> /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani copying pyani/anib.py -> /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani copying pyani/__init__.py -> /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani running egg_info creating pyani.egg-info writing pyani.egg-info/PKG-INFO writing dependency_links to pyani.egg-info/dependency_links.txt writing requirements to pyani.egg-info/requires.txt writing top-level names to pyani.egg-info/top_level.txt writing manifest file 'pyani.egg-info/SOURCES.txt' reading manifest file 'pyani.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pyani.egg-info/SOURCES.txt' running build_scripts creating build creating build/scripts-3.9 copying and adjusting bin/average_nucleotide_identity.py -> build/scripts-3.9 copying and adjusting bin/genbank_get_genomes_by_taxon.py -> build/scripts-3.9 copying and adjusting bin/delta_filter_wrapper.py -> build/scripts-3.9 changing mode of build/scripts-3.9/average_nucleotide_identity.py from 644 to 755 changing mode of build/scripts-3.9/genbank_get_genomes_by_taxon.py from 644 to 755 changing mode of build/scripts-3.9/delta_filter_wrapper.py from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:232: cd /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build; python3.9 -m nose -v tests /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/tests/test_anib.py:59: FutureWarning: pandas.util.testing is deprecated. Use the functions in the public API at pandas.testing instead. from pandas.util.testing import assert_frame_equal generate BLAST+ db commands. ... ok generate BLASTN+ commands. ... ok generate dictionary of BLASTN+ database jobs. ... ok generate BLASTN+ command-line. ... ok create jobgraph for BLASTN+ jobs. ... ok generate makeblastdb command-line. ... ok fragment files for ANIb/ANIblastall. ... ok parses directory of .blast_tab output. ... ok parses NUCmer .delta/.filter file. ... ok processes directory of .delta files into ANIResults. ... ok generate NUCmer command line with maxmatch. ... ok generate multiple abstract NUCmer/delta-filter command-lines. ... ok generate dependency tree of NUCmer/delta-filter jobs. ... ok generate single abstract NUCmer/delta-filter command-line. ... ok ANIb results concordant with JSpecies. ... ok ANIm results concordant with JSpecies. ... ok TETRA results concordant with JSpecies. ... ok Test Biopython import. ... ok Test matplotlib import. ... ok Test numpy import. ... ok Test pandas import. ... ok Test scipy import. ... ok Test that BLAST+ is runnable. ... ok Test that NUCmer is runnable. ... ok Write .png graphics with mpl ... ok Write .svg graphics with mpl ... ok Write .pdf graphics with mpl ... ok Write .png graphics with seaborn ... ok Write .svg graphics with seaborn ... ok Write .pdf graphics with seaborn ... ok create dummy job with dependency. ... ok create a dummy job. ... ok create dummy job with command. ... ok create dummy job, add and remove dependency. ... ok create dummy 1-parameter sweep jobgroup. ... ok create dummy 2-parameter sweep jobgroup. ... ok add jobgroup dependency. ... ok create dummy jobgroup. ... ok add and remove jobgroup dependency. ... ok module builds command sets. ... ok module runs dependency graph. ... ok multiprocessing() runs basic jobs. ... ok Test parsing of NUCmer delta file. ... ok TETRA correlation calculated correctly. ... ok detects unambiguous IUPAC symbols correctly. ... ok TETRA Z-score calculated correctly. ... ok ---------------------------------------------------------------------- Ran 46 tests in 498.179s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/python-pyani-0.2.10/debian/python3-pyani running install running build running build_py running egg_info writing pyani.egg-info/PKG-INFO writing dependency_links to pyani.egg-info/dependency_links.txt writing requirements to pyani.egg-info/requires.txt writing top-level names to pyani.egg-info/top_level.txt reading manifest file 'pyani.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pyani.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/python-pyani-0.2.10/debian/python3-pyani/usr creating /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib creating /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9 creating /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages creating /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani creating /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__pycache__ copying /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani/__pycache__/pyani_graphics.cpython-39.pyc -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__pycache__ copying /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani/__pycache__/tetra.cpython-39.pyc -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__pycache__ copying /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani/__pycache__/run_multiprocessing.cpython-39.pyc -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__pycache__ copying /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani/__pycache__/anim.cpython-39.pyc -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__pycache__ copying /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani/__pycache__/pyani_tools.cpython-39.pyc -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__pycache__ copying /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani/__pycache__/pyani_jobs.cpython-39.pyc -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__pycache__ copying /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani/__pycache__/pyani_files.cpython-39.pyc -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__pycache__ copying /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani/__pycache__/pyani_config.cpython-39.pyc -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__pycache__ copying /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani/__pycache__/anib.cpython-39.pyc -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__pycache__ copying /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani/__pycache__/__init__.cpython-39.pyc -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__pycache__ copying /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani/__init__.py -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani copying /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani/anib.py -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani copying /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani/anim.py -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani copying /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani/pyani_config.py -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani copying /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani/pyani_files.py -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani copying /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani/pyani_graphics.py -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani copying /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani/pyani_jobs.py -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani copying /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani/pyani_tools.py -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani copying /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani/run_multiprocessing.py -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani copying /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani/run_sge.py -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani copying /build/python-pyani-0.2.10/.pybuild/cpython3_3.9_pyani/build/pyani/tetra.py -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani byte-compiling /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/anib.py to anib.cpython-39.pyc byte-compiling /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/anim.py to anim.cpython-39.pyc byte-compiling /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/pyani_config.py to pyani_config.cpython-39.pyc byte-compiling /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/pyani_files.py to pyani_files.cpython-39.pyc byte-compiling /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/pyani_graphics.py to pyani_graphics.cpython-39.pyc byte-compiling /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/pyani_jobs.py to pyani_jobs.cpython-39.pyc byte-compiling /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/pyani_tools.py to pyani_tools.cpython-39.pyc byte-compiling /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/run_multiprocessing.py to run_multiprocessing.cpython-39.pyc byte-compiling /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/run_sge.py to run_sge.cpython-39.pyc byte-compiling /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani/tetra.py to tetra.cpython-39.pyc running install_egg_info Copying pyani.egg-info to /build/python-pyani-0.2.10/debian/python3-pyani/usr/lib/python3.9/dist-packages/pyani-0.2.10.egg-info Skipping SOURCES.txt running install_scripts creating /build/python-pyani-0.2.10/debian/python3-pyani/usr/bin copying build/scripts-3.9/delta_filter_wrapper.py -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/bin copying build/scripts-3.9/genbank_get_genomes_by_taxon.py -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/bin copying build/scripts-3.9/average_nucleotide_identity.py -> /build/python-pyani-0.2.10/debian/python3-pyani/usr/bin changing mode of /build/python-pyani-0.2.10/debian/python3-pyani/usr/bin/delta_filter_wrapper.py to 755 changing mode of /build/python-pyani-0.2.10/debian/python3-pyani/usr/bin/genbank_get_genomes_by_taxon.py to 755 changing mode of /build/python-pyani-0.2.10/debian/python3-pyani/usr/bin/average_nucleotide_identity.py to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/python-pyani-0.2.10' dh_installman --language=C make[1]: Leaving directory '/build/python-pyani-0.2.10' dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -O--buildsystem=pybuild dh_strip -O--buildsystem=pybuild dh_makeshlibs -O--buildsystem=pybuild dh_shlibdeps -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pyani' in '../python3-pyani_0.2.10-2_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-pyani_0.2.10-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/9575 and its subdirectories I: Current time: Thu Jul 29 18:46:10 -12 2021 I: pbuilder-time-stamp: 1627627570