I: pbuilder: network access will be disabled during build I: Current time: Wed Jul 28 13:21:40 +14 2021 I: pbuilder-time-stamp: 1627428100 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pairtools_0.3.0-2.dsc] I: copying [./pairtools_0.3.0.orig.tar.gz] I: copying [./pairtools_0.3.0-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.saOR6rhU/trustedkeys.kbx': General error gpgv: Signature made Thu Jul 16 03:51:33 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pairtools_0.3.0-2.dsc dpkg-source: info: extracting pairtools in pairtools-0.3.0 dpkg-source: info: unpacking pairtools_0.3.0.orig.tar.gz dpkg-source: info: unpacking pairtools_0.3.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile dpkg-source: info: applying fix-spelling dpkg-source: info: applying tests-to-python3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/17456/tmp/hooks/D01_modify_environment starting debug: Running on codethink14-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/17456/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/17456/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/var/lib/jenkins HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=17456 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.46sN8wIYRr/pbuilderrc_FodN --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.46sN8wIYRr/b2 --logfile b2/build.log --extrapackages usrmerge pairtools_0.3.0-2.dsc' SUDO_GID=117 SUDO_UID=110 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root USERNAME=root _='I: set' http_proxy=http://192.168.101.16:3128 I: uname -a Linux i-capture-the-hostname 4.15.0-151-generic #157-Ubuntu SMP Fri Jul 9 21:03:48 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 22 16:26 bash -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash -rwxr-xr-x 1 root root 101384 Sep 23 2020 date -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd -rwxr-xr-x 1 root root 89824 Sep 23 2020 df -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir -rwxr-xr-x 1 root root 76152 Feb 8 04:38 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 8 04:38 findmnt -rwsr-xr-x 1 root root 34824 Feb 27 06:12 fusermount -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe -rwxr-xr-x 1 root root 93744 Mar 3 13:30 gzip -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln -rwxr-xr-x 1 root root 52720 Feb 8 2020 login -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls -rwxr-xr-x 1 root root 161960 Feb 8 04:38 lsblk -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 8 04:38 more -rwsr-xr-x 1 root root 51360 Feb 8 04:38 mount -rwxr-xr-x 1 root root 14496 Feb 8 04:38 mountpoint -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Jul 28 13:21 sh -> bash lrwxrwxrwx 1 root root 4 Jul 26 23:25 sh.distrib -> dash -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty -rwsr-xr-x 1 root root 67776 Feb 8 04:38 su -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync -rwxr-xr-x 1 root root 535768 Feb 17 23:55 tar -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch -rwxr-xr-x 1 root root 31512 Sep 23 2020 true -rwxr-xr-x 1 root root 14264 Feb 27 06:12 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 8 04:38 umount -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 8 04:38 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew I: user script /srv/workspace/pbuilder/17456/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-all-dbg, cython3, cython3-dbg, python3-setuptools, python3-click, python3-numpy, python3-sphinx-click dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dbg; however: Package python3-all-dbg is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on cython3-dbg; however: Package cython3-dbg is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-click; however: Package python3-sphinx-click is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cython3{a} cython3-dbg{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu67{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-all-dbg{a} libpython3-all-dev{a} libpython3-dbg{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dbg{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} openssl{a} po-debconf{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dbg{a} python3-all-dev{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-click{a} python3-colorama{a} python3-dbg{a} python3-dev{a} python3-distutils{a} python3-docutils{a} python3-idna{a} python3-imagesize{a} python3-jinja2{a} python3-lib2to3{a} python3-markupsafe{a} python3-minimal{a} python3-numpy{a} python3-packaging{a} python3-pbr{a} python3-pkg-resources{a} python3-pygments{a} python3-pyparsing{a} python3-requests{a} python3-roman{a} python3-setuptools{a} python3-six{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sphinx-click{a} python3-tz{a} python3-urllib3{a} python3.9{a} python3.9-dbg{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl gdb gdb-minimal javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-pil wget 0 packages upgraded, 103 newly installed, 0 to remove and 0 not upgraded. Need to get 91.3 MB of archives. After unpacking 364 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-minimal arm64 3.9.2-1 [797 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 python3.9-minimal arm64 3.9.2-1 [1884 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 python3-minimal arm64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libmpdec3 arm64 2.5.1-1 [84.4 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 libreadline8 arm64 8.1-1 [160 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-stdlib arm64 3.9.2-1 [1658 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 python3.9 arm64 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 libpython3-stdlib arm64 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 python3 arm64 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 sgml-base all 1.30 [15.1 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 openssl arm64 1.1.1k-1 [829 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 ca-certificates all 20210119 [158 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 cython3 arm64 0.29.21-3+b1 [1239 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 cython3-dbg arm64 0.29.21-3+b1 [9944 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 python3-distutils all 3.9.2-1 [143 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 xml-core all 0.18+nmu1 [23.8 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 docutils-common all 0.16+dfsg-4 [129 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libblas3 arm64 3.9.0-3 [101 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libexpat1-dev arm64 2.2.10-2 [126 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libgfortran5 arm64 10.2.1-6 [333 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 liblapack3 arm64 3.9.0-3 [1541 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-dbg arm64 3.9.2-1 [14.6 MB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 libpython3-dbg arm64 3.9.2-3 [21.6 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 libpython3-all-dbg arm64 3.9.2-3 [1064 B] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libpython3.9 arm64 3.9.2-1 [1556 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-dev arm64 3.9.2-1 [3835 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 libpython3-dev arm64 3.9.2-3 [21.7 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 libpython3-all-dev arm64 3.9.2-3 [1068 B] Get: 68 http://deb.debian.org/debian bullseye/main arm64 python-babel-localedata all 2.8.0+dfsg.1-7 [4997 kB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 python3-alabaster all 0.7.8-1.1 [18.6 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 python3-all arm64 3.9.2-3 [1056 B] Get: 71 http://deb.debian.org/debian bullseye/main arm64 python3.9-dbg arm64 3.9.2-1 [19.8 MB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 python3-dbg arm64 3.9.2-3 [1224 B] Get: 73 http://deb.debian.org/debian bullseye/main arm64 python3-all-dbg arm64 3.9.2-3 [1064 B] Get: 74 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Get: 75 http://deb.debian.org/debian bullseye/main arm64 python3.9-dev arm64 3.9.2-1 [515 kB] Get: 76 http://deb.debian.org/debian bullseye/main arm64 python3-dev arm64 3.9.2-3 [24.8 kB] Get: 77 http://deb.debian.org/debian bullseye/main arm64 python3-all-dev arm64 3.9.2-3 [1064 B] Get: 78 http://deb.debian.org/debian bullseye/main arm64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 79 http://deb.debian.org/debian bullseye/main arm64 python3-tz all 2021.1-1 [34.8 kB] Get: 80 http://deb.debian.org/debian bullseye/main arm64 python3-babel all 2.8.0+dfsg.1-7 [100 kB] Get: 81 http://deb.debian.org/debian bullseye/main arm64 python3-certifi all 2020.6.20-1 [151 kB] Get: 82 http://deb.debian.org/debian bullseye/main arm64 python3-chardet all 4.0.0-1 [99.0 kB] Get: 83 http://deb.debian.org/debian bullseye/main arm64 python3-colorama all 0.4.4-1 [28.5 kB] Get: 84 http://deb.debian.org/debian bullseye/main arm64 python3-click all 7.1.2-1 [75.7 kB] Get: 85 http://deb.debian.org/debian bullseye/main arm64 python3-roman all 2.0.0-5 [9064 B] Get: 86 http://deb.debian.org/debian bullseye/main arm64 python3-docutils all 0.16+dfsg-4 [384 kB] Get: 87 http://deb.debian.org/debian bullseye/main arm64 python3-idna all 2.10-1 [37.4 kB] Get: 88 http://deb.debian.org/debian bullseye/main arm64 python3-imagesize all 1.2.0-2 [5824 B] Get: 89 http://deb.debian.org/debian bullseye/main arm64 python3-markupsafe arm64 1.1.1-1+b3 [15.2 kB] Get: 90 http://deb.debian.org/debian bullseye/main arm64 python3-jinja2 all 2.11.3-1 [114 kB] Get: 91 http://deb.debian.org/debian bullseye/main arm64 python3-numpy arm64 1:1.19.5-1 [3196 kB] Get: 92 http://deb.debian.org/debian bullseye/main arm64 python3-pyparsing all 2.4.7-1 [109 kB] Get: 93 http://deb.debian.org/debian bullseye/main arm64 python3-packaging all 20.9-2 [33.5 kB] Get: 94 http://deb.debian.org/debian bullseye/main arm64 python3-setuptools all 52.0.0-4 [366 kB] Get: 95 http://deb.debian.org/debian bullseye/main arm64 python3-six all 1.16.0-1 [17.1 kB] Get: 96 http://deb.debian.org/debian bullseye/main arm64 python3-pbr all 5.5.0-2 [60.4 kB] Get: 97 http://deb.debian.org/debian bullseye/main arm64 python3-pygments all 2.7.1+dfsg-2.1 [657 kB] Get: 98 http://deb.debian.org/debian bullseye/main arm64 python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get: 99 http://deb.debian.org/debian bullseye/main arm64 python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get: 100 http://deb.debian.org/debian bullseye/main arm64 python3-snowballstemmer all 2.1.0-1 [58.7 kB] Get: 101 http://deb.debian.org/debian bullseye/main arm64 sphinx-common all 3.4.3-2 [578 kB] Get: 102 http://deb.debian.org/debian bullseye/main arm64 python3-sphinx all 3.4.3-2 [545 kB] Get: 103 http://deb.debian.org/debian bullseye/main arm64 python3-sphinx-click all 2.5.0-1 [8204 B] Fetched 91.3 MB in 2s (58.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../1-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_arm64.deb ... 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Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20934 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_arm64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sgml-base. Preparing to unpack .../01-sgml-base_1.30_all.deb ... Unpacking sgml-base (1.30) ... Selecting previously unselected package sensible-utils. 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Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../09-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package cython3. 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Preparing to unpack .../68-python3-roman_2.0.0-5_all.deb ... Unpacking python3-roman (2.0.0-5) ... Selecting previously unselected package python3-docutils. Preparing to unpack .../69-python3-docutils_0.16+dfsg-4_all.deb ... Unpacking python3-docutils (0.16+dfsg-4) ... Selecting previously unselected package python3-idna. Preparing to unpack .../70-python3-idna_2.10-1_all.deb ... Unpacking python3-idna (2.10-1) ... Selecting previously unselected package python3-imagesize. Preparing to unpack .../71-python3-imagesize_1.2.0-2_all.deb ... Unpacking python3-imagesize (1.2.0-2) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../72-python3-markupsafe_1.1.1-1+b3_arm64.deb ... Unpacking python3-markupsafe (1.1.1-1+b3) ... Selecting previously unselected package python3-jinja2. Preparing to unpack .../73-python3-jinja2_2.11.3-1_all.deb ... Unpacking python3-jinja2 (2.11.3-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../74-python3-numpy_1%3a1.19.5-1_arm64.deb ... Unpacking python3-numpy (1:1.19.5-1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../75-python3-pyparsing_2.4.7-1_all.deb ... Unpacking python3-pyparsing (2.4.7-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../76-python3-packaging_20.9-2_all.deb ... Unpacking python3-packaging (20.9-2) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../77-python3-setuptools_52.0.0-4_all.deb ... Unpacking python3-setuptools (52.0.0-4) ... Selecting previously unselected package python3-six. Preparing to unpack .../78-python3-six_1.16.0-1_all.deb ... Unpacking python3-six (1.16.0-1) ... Selecting previously unselected package python3-pbr. Preparing to unpack .../79-python3-pbr_5.5.0-2_all.deb ... Unpacking python3-pbr (5.5.0-2) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../80-python3-pygments_2.7.1+dfsg-2.1_all.deb ... Unpacking python3-pygments (2.7.1+dfsg-2.1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../81-python3-urllib3_1.26.5-1~exp1_all.deb ... Unpacking python3-urllib3 (1.26.5-1~exp1) ... Selecting previously unselected package python3-requests. Preparing to unpack .../82-python3-requests_2.25.1+dfsg-2_all.deb ... Unpacking python3-requests (2.25.1+dfsg-2) ... Selecting previously unselected package python3-snowballstemmer. Preparing to unpack .../83-python3-snowballstemmer_2.1.0-1_all.deb ... Unpacking python3-snowballstemmer (2.1.0-1) ... Selecting previously unselected package sphinx-common. Preparing to unpack .../84-sphinx-common_3.4.3-2_all.deb ... Unpacking sphinx-common (3.4.3-2) ... Selecting previously unselected package python3-sphinx. Preparing to unpack .../85-python3-sphinx_3.4.3-2_all.deb ... Unpacking python3-sphinx (3.4.3-2) ... Selecting previously unselected package python3-sphinx-click. Preparing to unpack .../86-python3-sphinx-click_2.5.0-1_all.deb ... Unpacking python3-sphinx-click (2.5.0-1) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:arm64 (1.5.3-1) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up python-babel-localedata (2.8.0+dfsg.1-7) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.2.10-2) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libgfortran5:arm64 (10.2.1-6) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libmpdec3:arm64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up sgml-base (1.30) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up openssl (1.1.1k-1) ... Setting up libelf1:arm64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up liblapack3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:arm64 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up xml-core (0.18+nmu1) ... Setting up libpython3.9-stdlib:arm64 (3.9.2-1) ... Setting up libpython3-stdlib:arm64 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpython3.9-dbg:arm64 (3.9.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3-dbg:arm64 (3.9.2-3) ... Setting up libpython3-all-dbg:arm64 (3.9.2-3) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libpython3.9:arm64 (3.9.2-1) ... Setting up sphinx-common (3.4.3-2) ... Setting up python3.9 (3.9.2-1) ... Setting up libpython3.9-dev:arm64 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-markupsafe (1.1.1-1+b3) ... Setting up python3-tz (2021.1-1) ... Setting up python3.9-dbg (3.9.2-1) ... Setting up python3-six (1.16.0-1) ... Setting up python3-roman (2.0.0-5) ... Setting up python3-jinja2 (2.11.3-1) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up python3-snowballstemmer (2.1.0-1) ... Setting up python3-idna (2.10-1) ... Setting up cython3 (0.29.21-3+b1) ... Setting up cython3-dbg (0.29.21-3+b1) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-imagesize (1.2.0-2) ... Setting up python3-dbg (3.9.2-3) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up libpython3-dev:arm64 (3.9.2-3) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-babel (2.8.0+dfsg.1-7) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-colorama (0.4.4-1) ... Setting up python3-pbr (5.5.0-2) ... Setting up python3-alabaster (0.7.8-1.1) ... Setting up python3-all (3.9.2-3) ... Setting up python3-click (7.1.2-1) ... Setting up python3-pygments (2.7.1+dfsg-2.1) ... Setting up python3-packaging (20.9-2) ... Setting up python3-chardet (4.0.0-1) ... Setting up libpython3-all-dev:arm64 (3.9.2-3) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-all-dbg (3.9.2-3) ... Setting up python3-all-dev (3.9.2-3) ... Processing triggers for libc-bin (2.31-13) ... Processing triggers for sgml-base (1.30) ... Setting up docutils-common (0.16+dfsg-4) ... Processing triggers for sgml-base (1.30) ... Setting up python3-docutils (0.16+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-sphinx (3.4.3-2) ... Setting up python3-sphinx-click (2.5.0-1) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl The following NEW packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 59.5 kB of archives. After this operation, 157 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main arm64 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:2 http://deb.debian.org/debian bullseye/main arm64 libtext-glob-perl all 0.11-1 [8888 B] Get:3 http://deb.debian.org/debian bullseye/main arm64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:4 http://deb.debian.org/debian bullseye/main arm64 usrmerge all 25 [13.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.5 kB in 0s (1687 kB/s) Selecting previously unselected package libnumber-compare-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26971 files and directories currently installed.) Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... Unpacking libnumber-compare-perl (0.03-1.1) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... Unpacking libtext-glob-perl (0.11-1) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... Unpacking libfile-find-rule-perl (0.34-1) ... Selecting previously unselected package usrmerge. Preparing to unpack .../archives/usrmerge_25_all.deb ... Unpacking usrmerge (25) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libnumber-compare-perl (0.03-1.1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up usrmerge (25) ... The system has been successfully converted. Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. I: Building the package hostname: Temporary failure in name resolution I: Running cd /build/pairtools-0.3.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pairtools_0.3.0-2_source.changes dpkg-buildpackage: info: source package pairtools dpkg-buildpackage: info: source version 0.3.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/pairtools-0.3.0' dh_auto_clean I: pybuild base:232: python3.9 setup.py clean /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pairtools-0.3.0/pairtools/_dedup.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling /build/pairtools-0.3.0/pairtools/_dedup.pyx because it changed. [1/1] Cythonizing /build/pairtools-0.3.0/pairtools/_dedup.pyx running clean removing '/build/pairtools-0.3.0/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it I: pybuild base:232: python3.9-dbg setup.py clean running clean removing '/build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it find . -name "_*.c" -delete make[1]: Leaving directory '/build/pairtools-0.3.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/pairtools-0.3.0/pairtools/_dedup.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling /build/pairtools-0.3.0/pairtools/_dedup.pyx because it changed. [1/1] Cythonizing /build/pairtools-0.3.0/pairtools/_dedup.pyx running config I: pybuild base:232: python3.9-dbg setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools copying pairtools/pairtools_stats.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools copying pairtools/pairtools_split.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools copying pairtools/pairtools_sort.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools copying pairtools/pairtools_select.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools copying pairtools/pairtools_restrict.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools copying pairtools/pairtools_phase.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools copying pairtools/pairtools_parse.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools copying pairtools/pairtools_merge.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools copying pairtools/pairtools_markasdup.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools copying pairtools/pairtools_flip.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools copying pairtools/pairtools_filterbycov.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools copying pairtools/pairtools_dedup.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools copying pairtools/_pairsam_format.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools copying pairtools/_headerops.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools copying pairtools/_fileio.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools copying pairtools/__main__.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools copying pairtools/__init__.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools running build_ext building 'pairtools._dedup' extension creating build creating build/temp.linux-arm64-3.9 creating build/temp.linux-arm64-3.9/build creating build/temp.linux-arm64-3.9/build/pairtools-0.3.0 creating build/temp.linux-arm64-3.9/build/pairtools-0.3.0/pairtools aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/pairtools-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/pairtools-0.3.0/pairtools/_dedup.c -o build/temp.linux-arm64-3.9/build/pairtools-0.3.0/pairtools/_dedup.o In file included from /usr/include/python3.9/numpy/ndarraytypes.h:1822, from /usr/include/python3.9/numpy/ndarrayobject.h:12, from /usr/include/python3.9/numpy/arrayobject.h:4, from /build/pairtools-0.3.0/pairtools/_dedup.c:623: /usr/include/python3.9/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/pairtools-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.9/build/pairtools-0.3.0/pairtools/_dedup.o -o /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/_dedup.cpython-39-aarch64-linux-gnu.so I: pybuild base:232: /usr/bin/python3-dbg setup.py build running build running build_py /usr/lib/python3/dist-packages/setuptools/lib2to3_ex.py:10: PendingDeprecationWarning: lib2to3 package is deprecated and may not be able to parse Python 3.10+ from lib2to3.refactor import RefactoringTool, get_fixers_from_package creating /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools copying pairtools/pairtools_stats.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools copying pairtools/pairtools_split.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools copying pairtools/pairtools_sort.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools copying pairtools/pairtools_select.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools copying pairtools/pairtools_restrict.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools copying pairtools/pairtools_phase.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools copying pairtools/pairtools_parse.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools copying pairtools/pairtools_merge.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools copying pairtools/pairtools_markasdup.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools copying pairtools/pairtools_flip.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools copying pairtools/pairtools_filterbycov.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools copying pairtools/pairtools_dedup.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools copying pairtools/_pairsam_format.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools copying pairtools/_headerops.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools copying pairtools/_fileio.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools copying pairtools/__main__.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools copying pairtools/__init__.py -> /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools running build_ext building 'pairtools._dedup' extension creating build/temp.linux-arm64-3.9-pydebug creating build/temp.linux-arm64-3.9-pydebug/build creating build/temp.linux-arm64-3.9-pydebug/build/pairtools-0.3.0 creating build/temp.linux-arm64-3.9-pydebug/build/pairtools-0.3.0/pairtools aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -Og -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/pairtools-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9d -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/pairtools-0.3.0/pairtools/_dedup.c -o build/temp.linux-arm64-3.9-pydebug/build/pairtools-0.3.0/pairtools/_dedup.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from /build/pairtools-0.3.0/pairtools/_dedup.c:623: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/pairtools-0.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.9-pydebug/build/pairtools-0.3.0/pairtools/_dedup.o -o /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/_dedup.cpython-39d-aarch64-linux-gnu.so dh_auto_test -O--buildsystem=pybuild I: pybuild base:232: cd /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build; python3.9 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK I: pybuild base:232: cd /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build; python3.9-dbg -m unittest discover -v /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/pairtools_stats.py:10: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.10 it will stop working from collections import OrderedDict, Mapping /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/pairtools_select.py:80: DeprecationWarning: invalid escape sequence \d '''Select pairs according to some condition. ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/pairtools-0.3.0' cd doc && make man make[2]: Entering directory '/build/pairtools-0.3.0/doc' sphinx-build -b man -d _build/doctrees . _build/man Running Sphinx v3.4.3 making output directory... done building [mo]: targets for 0 po files that are out of date building [man]: all manpages updating environment: [new config] 8 added, 0 changed, 0 removed reading sources... [ 12%] cli_tools reading sources... [ 25%] formats reading sources... [ 37%] index reading sources... [ 50%] installation reading sources... [ 62%] parsing reading sources... [ 75%] quickstart reading sources... [ 87%] sorting reading sources... [100%] technotes /build/pairtools-0.3.0/doc/cli_tools.rst:4: WARNING: Failed to import "cli" from "pairtools". The following exception was raised: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx_click/ext.py", line 384, in _load_module mod = __import__(module_name, globals(), locals(), [attr_name]) ModuleNotFoundError: No module named 'pairtools' /build/pairtools-0.3.0/doc/formats.rst:104: WARNING: Duplicate explicit target name: "2". /build/pairtools-0.3.0/doc/formats.rst:84: WARNING: Duplicate target name, cannot be used as a unique reference: "2". /build/pairtools-0.3.0/doc/formats.rst:94: WARNING: Unknown target name: "4". looking for now-outdated files... none found pickling environment... done checking consistency... done writing... pairtools.1 { quickstart installation parsing sorting formats technotes cli_tools } /build/pairtools-0.3.0/doc/formats.rst:: WARNING: "table cell spanning" not supported /build/pairtools-0.3.0/doc/formats.rst:: WARNING: "table cell spanning" not supported done build succeeded, 6 warnings. The manual pages are in _build/man. Build finished. The manual pages are in _build/man. make[2]: Leaving directory '/build/pairtools-0.3.0/doc' dh_auto_install I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/pairtools-0.3.0/debian/python3-pairtools running install running build running build_py running build_ext running install_lib creating /build/pairtools-0.3.0/debian/python3-pairtools creating /build/pairtools-0.3.0/debian/python3-pairtools/usr creating /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib creating /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9 creating /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages creating /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools creating /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/__pycache__/pairtools_filterbycov.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/__pycache__/pairtools_parse.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/__pycache__/pairtools_phase.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/__pycache__/pairtools_restrict.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/__pycache__/pairtools_split.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/__pycache__/pairtools_select.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/__pycache__/pairtools_merge.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/__pycache__/pairtools_flip.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/__pycache__/pairtools_sort.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/__pycache__/pairtools_stats.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/__pycache__/pairtools_markasdup.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/__pycache__/_headerops.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/__pycache__/_pairsam_format.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/__pycache__/_fileio.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/__pycache__/pairtools_dedup.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/__pycache__/__init__.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/_dedup.cpython-39-aarch64-linux-gnu.so -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/__init__.py -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/__main__.py -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/_fileio.py -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/_headerops.py -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/_pairsam_format.py -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/pairtools_dedup.py -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/pairtools_filterbycov.py -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/pairtools_flip.py -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/pairtools_markasdup.py -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/pairtools_merge.py -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/pairtools_parse.py -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/pairtools_phase.py -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/pairtools_restrict.py -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/pairtools_select.py -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/pairtools_sort.py -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/pairtools_split.py -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9/build/pairtools/pairtools_stats.py -> /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/__main__.py to __main__.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/_fileio.py to _fileio.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/_headerops.py to _headerops.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/_pairsam_format.py to _pairsam_format.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/pairtools_dedup.py to pairtools_dedup.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/pairtools_filterbycov.py to pairtools_filterbycov.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/pairtools_flip.py to pairtools_flip.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/pairtools_markasdup.py to pairtools_markasdup.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/pairtools_merge.py to pairtools_merge.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/pairtools_parse.py to pairtools_parse.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/pairtools_phase.py to pairtools_phase.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/pairtools_restrict.py to pairtools_restrict.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/pairtools_select.py to pairtools_select.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/pairtools_sort.py to pairtools_sort.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/pairtools_split.py to pairtools_split.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools/pairtools_stats.py to pairtools_stats.cpython-39.pyc running install_egg_info running egg_info creating pairtools.egg-info writing pairtools.egg-info/PKG-INFO writing dependency_links to pairtools.egg-info/dependency_links.txt writing entry points to pairtools.egg-info/entry_points.txt writing requirements to pairtools.egg-info/requires.txt writing top-level names to pairtools.egg-info/top_level.txt writing manifest file 'pairtools.egg-info/SOURCES.txt' reading manifest file 'pairtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'doc/_templates' warning: no files found matching '*.pxd' anywhere in distribution warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.deps/*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution writing manifest file 'pairtools.egg-info/SOURCES.txt' Copying pairtools.egg-info to /build/pairtools-0.3.0/debian/python3-pairtools/usr/lib/python3.9/dist-packages/pairtools-0.3.0.egg-info Skipping SOURCES.txt running install_scripts Installing pairtools script to /build/pairtools-0.3.0/debian/python3-pairtools/usr/bin I: pybuild base:232: /usr/bin/python3-dbg setup.py install --root /build/pairtools-0.3.0/debian/python3-pairtools-dbg running install running build running build_py /usr/lib/python3/dist-packages/setuptools/lib2to3_ex.py:10: PendingDeprecationWarning: lib2to3 package is deprecated and may not be able to parse Python 3.10+ from lib2to3.refactor import RefactoringTool, get_fixers_from_package running build_ext running install_lib creating /build/pairtools-0.3.0/debian/python3-pairtools-dbg creating /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr creating /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib creating /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9 creating /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages creating /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools creating /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/__pycache__/pairtools_filterbycov.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/__pycache__/pairtools_parse.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/__pycache__/pairtools_phase.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/__pycache__/pairtools_restrict.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/__pycache__/pairtools_split.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/__pycache__/pairtools_select.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/__pycache__/pairtools_merge.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/__pycache__/pairtools_flip.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/__pycache__/pairtools_sort.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/__pycache__/pairtools_stats.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/__pycache__/pairtools_markasdup.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/__pycache__/_headerops.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/__pycache__/_pairsam_format.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/__pycache__/_fileio.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/__pycache__/pairtools_dedup.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/__pycache__/__init__.cpython-39.pyc -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/__pycache__ copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/_dedup.cpython-39d-aarch64-linux-gnu.so -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/__init__.py -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/__main__.py -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/_fileio.py -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/_headerops.py -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/_pairsam_format.py -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/pairtools_dedup.py -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/pairtools_filterbycov.py -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/pairtools_flip.py -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/pairtools_markasdup.py -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/pairtools_merge.py -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/pairtools_parse.py -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/pairtools_phase.py -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/pairtools_restrict.py -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/pairtools_select.py -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/pairtools_sort.py -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/pairtools_split.py -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools copying /build/pairtools-0.3.0/.pybuild/cpython3_3.9_dbg/build/pairtools/pairtools_stats.py -> /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/__init__.py to __init__.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/__main__.py to __main__.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/_fileio.py to _fileio.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/_headerops.py to _headerops.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/_pairsam_format.py to _pairsam_format.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/pairtools_dedup.py to pairtools_dedup.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/pairtools_filterbycov.py to pairtools_filterbycov.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/pairtools_flip.py to pairtools_flip.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/pairtools_markasdup.py to pairtools_markasdup.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/pairtools_merge.py to pairtools_merge.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/pairtools_parse.py to pairtools_parse.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/pairtools_phase.py to pairtools_phase.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/pairtools_restrict.py to pairtools_restrict.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/pairtools_select.py to pairtools_select.cpython-39.pyc /usr/lib/python3.9/dist-packages/pairtools/pairtools_select.py:80: DeprecationWarning: invalid escape sequence \d byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/pairtools_sort.py to pairtools_sort.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/pairtools_split.py to pairtools_split.cpython-39.pyc byte-compiling /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools/pairtools_stats.py to pairtools_stats.cpython-39.pyc running install_egg_info running egg_info writing pairtools.egg-info/PKG-INFO writing dependency_links to pairtools.egg-info/dependency_links.txt writing entry points to pairtools.egg-info/entry_points.txt writing requirements to pairtools.egg-info/requires.txt writing top-level names to pairtools.egg-info/top_level.txt reading manifest file 'pairtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'doc/_templates' warning: no files found matching '*.pxd' anywhere in distribution warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.deps/*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution writing manifest file 'pairtools.egg-info/SOURCES.txt' Copying pairtools.egg-info to /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/lib/python3.9/dist-packages/pairtools-0.3.0.egg-info Skipping SOURCES.txt running install_scripts /usr/lib/python3.9/distutils/dist.py:858: DeprecationWarning: bdist_wininst command is deprecated since Python 3.8, use bdist_wheel (wheel packages) instead cmd_obj = self.command_obj[command] = klass(self) Installing pairtools script to /build/pairtools-0.3.0/debian/python3-pairtools-dbg/usr/bin make[1]: Leaving directory '/build/pairtools-0.3.0' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild debian/rules override_dh_strip make[1]: Entering directory '/build/pairtools-0.3.0' dh_strip -ppython3-pairtools --dbg-package=python3-pairtools-dbg rm -rf debian/python3-pairtools-dbg/usr/share/doc/python3-pairtools-dbg ln -s python3-pairtools debian/python3-pairtools-dbg/usr/share/doc/python3-pairtools-dbg make[1]: Leaving directory '/build/pairtools-0.3.0' dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild debian/rules override_dh_installdeb make[1]: Entering directory '/build/pairtools-0.3.0' rm -rf ./debian/python3-pairtools-dbg/usr/bin dh_installdeb make[1]: Leaving directory '/build/pairtools-0.3.0' dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-pairtools-examples: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package python3-pairtools: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pairtools: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-pairtools-dbg: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pairtools-dbg: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pairtools-dbg' in '../python3-pairtools-dbg_0.3.0-2_arm64.deb'. dpkg-deb: building package 'python3-pairtools' in '../python3-pairtools_0.3.0-2_arm64.deb'. dpkg-deb: building package 'python3-pairtools-examples' in '../python3-pairtools-examples_0.3.0-2_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../pairtools_0.3.0-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/17456/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/17456/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/17456 and its subdirectories I: Current time: Wed Jul 28 13:24:40 +14 2021 I: pbuilder-time-stamp: 1627428280