I: pbuilder: network access will be disabled during build I: Current time: Sun Jan 7 10:49:22 +14 2024 I: pbuilder-time-stamp: 1704574162 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [librostlab_1.0.20-10.dsc] I: copying [./librostlab_1.0.20.orig.tar.gz] I: copying [./librostlab_1.0.20-10.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.vhs_sx6I/trustedkeys.kbx': General error gpgv: Signature made Tue Feb 25 07:40:35 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./librostlab_1.0.20-10.dsc dpkg-source: info: extracting librostlab in librostlab-1.0.20 dpkg-source: info: unpacking librostlab_1.0.20.orig.tar.gz dpkg-source: info: unpacking librostlab_1.0.20-10.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1063913/tmp/hooks/D01_modify_environment starting debug: Running on codethink02-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jan 6 20:49 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1063913/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1063913/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=12 ' DIRSTACK=() DISTRIBUTION=bullseye EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=c514c43b228342cf91b885d94abc9186 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1063913 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CnwTAEy1/pbuilderrc_A7cn --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CnwTAEy1/b2 --logfile b2/build.log librostlab_1.0.20-10.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.104:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-17-cloud-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Mar 27 2022 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 7 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 7 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep -rwxr-xr-x 1 root root 64856 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 182496 Jan 25 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 93744 Apr 10 2022 gzip -rwxr-xr-x 1 root root 18440 Nov 7 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 157864 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Jan 20 2022 more -rwsr-xr-x 1 root root 51360 Jan 20 2022 mount -rwxr-xr-x 1 root root 14496 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 7 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 9 Jan 6 20:49 sh -> /bin/bash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Jan 20 2022 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 17 2021 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Jan 20 2022 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 7 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/1063913/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-linktree, doxygen, graphviz, texlive-latex-recommended, texlive-fonts-recommended, texlive-latex-extra, texlive-plain-generic, sphinx-common, d-shlibs dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 17734 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-linktree; however: Package dh-linktree is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-plain-generic; however: Package texlive-plain-generic is not installed. pbuilder-satisfydepends-dummy depends on sphinx-common; however: Package sphinx-common is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-linktree{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} intltool-debian{a} libann0{a} libapache-pom-java{a} libarchive-zip-perl{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcdt5{a} libcgraph6{a} libclang-cpp11{a} libclang1-11{a} libcommons-logging-java{a} libcommons-parent-java{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgd3{a} libglib2.0-0{a} libgraphite2-3{a} libgts-0.7-5{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libice6{a} libicu67{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libkpathsea6{a} liblab-gamut1{a} libllvm11{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpathplan4{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libptexenc1{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsm6{a} libsub-override-perl{a} libsynctex2{a} libteckit0{a} libtexlua53{a} libthai-data{a} libthai0{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} libz3-4{a} libzzip-0-13{a} m4{a} man-db{a} media-types{a} po-debconf{a} preview-latex-style{a} python3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} sphinx-common{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} texlive-plain-generic{a} tzdata{a} ucf{a} x11-common{a} xdg-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dvisvgm fonts-liberation javascript-common libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libgts-bin libltdl-dev libmail-sendmail-perl libnet-dbus-perl libx11-protocol-perl lmodern lynx python3-sphinx ruby shared-mime-info tex-gyre tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 137 newly installed, 0 to remove and 0 not upgraded. Need to get 183 MB of archives. After unpacking 643 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8+deb11u1 [142 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-minimal arm64 3.9.2-1 [797 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2+deb11u5 [84.1 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 python3.9-minimal arm64 3.9.2-1 [1884 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 python3-minimal arm64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 tzdata all 2021a-1+deb11u10 [286 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 libmpdec3 arm64 2.5.1-1 [84.4 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 readline-common all 8.1-1 [73.7 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 libreadline8 arm64 8.1-1 [160 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-stdlib arm64 3.9.2-1 [1658 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 python3.9 arm64 3.9.2-1 [466 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 libpython3-stdlib arm64 3.9.2-3 [21.4 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 python3 arm64 3.9.2-3 [37.9 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 ucf all 3.0043 [74.0 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 tex-common all 6.16 [53.7 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3+deb11u1 [273 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3+deb11u1 [123 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3+deb11u1 [69.2 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 d-shlibs all 0.98 [17.9 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7+deb11u4 [629 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 dh-linktree all 0.8 [11.0 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 libbsd0 arm64 0.11.3-1+deb11u1 [106 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libedit2 arm64 3.1-20191231-2+b1 [92.1 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libz3-4 arm64 4.8.10-1 [6117 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libllvm11 arm64 1:11.0.1-2 [14.7 MB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libclang-cpp11 arm64 1:11.0.1-2 [7957 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libclang1-11 arm64 1:11.0.1-2 [4553 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 doxygen arm64 1.9.1-1 [3891 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libpng16-16 arm64 1.6.37-3 [289 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libfreetype6 arm64 2.10.4+dfsg-1+deb11u1 [393 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 fonts-dejavu-core all 2.37-2 [1069 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 libfontconfig1 arm64 2.13.1-4.2 [344 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 fontconfig arm64 2.13.1-4.2 [416 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 fonts-lmodern all 2.004.5-6.1 [4540 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 libann0 arm64 1.1.2+doc-7 [25.1 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 libcdt5 arm64 2.42.2-5 [61.2 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 libcgraph6 arm64 2.42.2-5 [82.7 kB] Get: 68 http://deb.debian.org/debian bullseye/main arm64 libjpeg62-turbo arm64 1:2.0.6-4 [133 kB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 libdeflate0 arm64 1.7-1 [47.7 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 libjbig0 arm64 2.1-3.1+b2 [27.8 kB] Get: 71 http://deb.debian.org/debian bullseye/main arm64 libwebp6 arm64 0.6.1-2.1+deb11u2 [244 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 libtiff5 arm64 4.2.0-1+deb11u4 [278 kB] Get: 73 http://deb.debian.org/debian bullseye/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 75 http://deb.debian.org/debian bullseye/main arm64 libxcb1 arm64 1.14-3 [138 kB] Get: 76 http://deb.debian.org/debian bullseye/main arm64 libx11-data all 2:1.7.2-1+deb11u1 [311 kB] Get: 77 http://deb.debian.org/debian bullseye/main arm64 libx11-6 arm64 2:1.7.2-1+deb11u1 [749 kB] Get: 78 http://deb.debian.org/debian bullseye/main arm64 libxpm4 arm64 1:3.5.12-1.1~deb11u1 [47.2 kB] Get: 79 http://deb.debian.org/debian bullseye/main arm64 libgd3 arm64 2.3.0-2 [127 kB] Get: 80 http://deb.debian.org/debian bullseye/main arm64 libglib2.0-0 arm64 2.66.8-1 [1286 kB] Get: 81 http://deb.debian.org/debian bullseye/main arm64 libgts-0.7-5 arm64 0.7.6+darcs121130-4+b1 [143 kB] Get: 82 http://deb.debian.org/debian bullseye/main arm64 libpixman-1-0 arm64 0.40.0-1.1~deb11u1 [445 kB] Get: 83 http://deb.debian.org/debian bullseye/main arm64 libxcb-render0 arm64 1.14-3 [111 kB] Get: 84 http://deb.debian.org/debian bullseye/main arm64 libxcb-shm0 arm64 1.14-3 [101 kB] Get: 85 http://deb.debian.org/debian bullseye/main arm64 libxext6 arm64 2:1.3.3-1.1 [51.6 kB] Get: 86 http://deb.debian.org/debian bullseye/main arm64 libxrender1 arm64 1:0.9.10-1 [30.4 kB] Get: 87 http://deb.debian.org/debian bullseye/main arm64 libcairo2 arm64 1.16.0-5 [648 kB] Get: 88 http://deb.debian.org/debian bullseye/main arm64 libltdl7 arm64 2.4.6-15 [390 kB] Get: 89 http://deb.debian.org/debian bullseye/main arm64 libfribidi0 arm64 1.0.8-2+deb11u1 [64.9 kB] Get: 90 http://deb.debian.org/debian bullseye/main arm64 libgraphite2-3 arm64 1.3.14-1 [75.6 kB] Get: 91 http://deb.debian.org/debian bullseye/main arm64 libharfbuzz0b arm64 2.7.4-1 [1445 kB] Get: 92 http://deb.debian.org/debian bullseye/main arm64 libthai-data all 0.1.28-3 [170 kB] Get: 93 http://deb.debian.org/debian bullseye/main arm64 libdatrie1 arm64 0.2.13-1 [42.1 kB] Get: 94 http://deb.debian.org/debian bullseye/main arm64 libthai0 arm64 0.1.28-3 [53.0 kB] Get: 95 http://deb.debian.org/debian bullseye/main arm64 libpango-1.0-0 arm64 1.46.2-3 [183 kB] Get: 96 http://deb.debian.org/debian bullseye/main arm64 libpangoft2-1.0-0 arm64 1.46.2-3 [59.4 kB] Get: 97 http://deb.debian.org/debian bullseye/main arm64 libpangocairo-1.0-0 arm64 1.46.2-3 [48.6 kB] Get: 98 http://deb.debian.org/debian bullseye/main arm64 libpathplan4 arm64 2.42.2-5 [62.6 kB] Get: 99 http://deb.debian.org/debian bullseye/main arm64 libgvc6 arm64 2.42.2-5 [632 kB] Get: 100 http://deb.debian.org/debian bullseye/main arm64 libgvpr2 arm64 2.42.2-5 [201 kB] Get: 101 http://deb.debian.org/debian bullseye/main arm64 liblab-gamut1 arm64 2.42.2-5 [220 kB] Get: 102 http://deb.debian.org/debian bullseye/main arm64 x11-common all 1:7.7+22 [252 kB] Get: 103 http://deb.debian.org/debian bullseye/main arm64 libice6 arm64 2:1.0.10-1 [55.6 kB] Get: 104 http://deb.debian.org/debian bullseye/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB] Get: 105 http://deb.debian.org/debian bullseye/main arm64 libxt6 arm64 1:1.2.0-1 [176 kB] Get: 106 http://deb.debian.org/debian bullseye/main arm64 libxmu6 arm64 2:1.1.2-2+b3 [57.8 kB] Get: 107 http://deb.debian.org/debian bullseye/main arm64 libxaw7 arm64 2:1.0.13-1.1 [184 kB] Get: 108 http://deb.debian.org/debian bullseye/main arm64 graphviz arm64 2.42.2-5 [586 kB] Get: 109 http://deb.debian.org/debian bullseye/main arm64 libapache-pom-java all 18-1 [4676 B] Get: 110 http://deb.debian.org/debian bullseye/main arm64 libcommons-parent-java all 43-1 [10.8 kB] Get: 111 http://deb.debian.org/debian bullseye/main arm64 libcommons-logging-java all 1.2-2 [62.2 kB] Get: 112 http://deb.debian.org/debian bullseye/main arm64 libfontbox-java all 1:1.8.16-2 [211 kB] Get: 113 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 114 http://deb.debian.org/debian bullseye/main arm64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 115 http://deb.debian.org/debian bullseye/main arm64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 116 http://deb.debian.org/debian bullseye/main arm64 libkpathsea6 arm64 2020.20200327.54578-7+deb11u1 [170 kB] Get: 117 http://deb.debian.org/debian bullseye/main arm64 libpaper1 arm64 1.1.28+b1 [21.4 kB] Get: 118 http://deb.debian.org/debian bullseye/main arm64 libpaper-utils arm64 1.1.28+b1 [18.3 kB] Get: 119 http://deb.debian.org/debian bullseye/main arm64 libpdfbox-java all 1:1.8.16-2 [5205 kB] Get: 120 http://deb.debian.org/debian bullseye/main arm64 libptexenc1 arm64 2020.20200327.54578-7+deb11u1 [63.7 kB] Get: 121 http://deb.debian.org/debian bullseye/main arm64 libsynctex2 arm64 2020.20200327.54578-7+deb11u1 [80.6 kB] Get: 122 http://deb.debian.org/debian bullseye/main arm64 libteckit0 arm64 2.5.10+ds1-3 [293 kB] Get: 123 http://deb.debian.org/debian bullseye/main arm64 libtexlua53 arm64 2020.20200327.54578-7+deb11u1 [124 kB] Get: 124 http://deb.debian.org/debian bullseye/main arm64 libxi6 arm64 2:1.7.10-1 [81.7 kB] Get: 125 http://deb.debian.org/debian bullseye/main arm64 libzzip-0-13 arm64 0.13.62-3.3+deb11u1 [55.4 kB] Get: 126 http://deb.debian.org/debian bullseye/main arm64 preview-latex-style all 12.2-1 [201 kB] Get: 127 http://deb.debian.org/debian bullseye/main arm64 sphinx-common all 3.4.3-2 [578 kB] Get: 128 http://deb.debian.org/debian bullseye/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get: 129 http://deb.debian.org/debian bullseye/main arm64 texlive-binaries arm64 2020.20200327.54578-7+deb11u1 [7568 kB] Get: 130 http://deb.debian.org/debian bullseye/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 131 http://deb.debian.org/debian bullseye/main arm64 texlive-base all 2020.20210202-3 [20.8 MB] Get: 132 http://deb.debian.org/debian bullseye/main arm64 texlive-fonts-recommended all 2020.20210202-3 [5002 kB] Get: 133 http://deb.debian.org/debian bullseye/main arm64 texlive-latex-base all 2020.20210202-3 [1120 kB] Get: 134 http://deb.debian.org/debian bullseye/main arm64 texlive-latex-recommended all 2020.20210202-3 [14.5 MB] Get: 135 http://deb.debian.org/debian bullseye/main arm64 texlive-pictures all 2020.20210202-3 [6743 kB] Get: 136 http://deb.debian.org/debian bullseye/main arm64 texlive-latex-extra all 2020.20210202-3 [13.7 MB] Get: 137 http://deb.debian.org/debian bullseye/main arm64 texlive-plain-generic all 2020.20210202-3 [27.0 MB] Fetched 183 MB in 1s (143 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17734 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8+deb11u1_arm64.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../1-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../3-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:arm64. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_arm64.deb ... Unpacking libpython3.9-minimal:arm64 (3.9.2-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../6-libexpat1_2.2.10-2+deb11u5_arm64.deb ... Unpacking libexpat1:arm64 (2.2.10-2+deb11u5) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_arm64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:arm64 (3.9.2-1) ... Setting up libexpat1:arm64 (2.2.10-2+deb11u5) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18601 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_arm64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package tzdata. Preparing to unpack .../2-tzdata_2021a-1+deb11u10_all.deb ... Unpacking tzdata (2021a-1+deb11u10) ... Selecting previously unselected package libmpdec3:arm64. Preparing to unpack .../3-libmpdec3_2.5.1-1_arm64.deb ... Unpacking libmpdec3:arm64 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../5-libreadline8_8.1-1_arm64.deb ... Unpacking libreadline8:arm64 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:arm64. Preparing to unpack .../6-libpython3.9-stdlib_3.9.2-1_arm64.deb ... Unpacking libpython3.9-stdlib:arm64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../7-python3.9_3.9.2-1_arm64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../8-libpython3-stdlib_3.9.2-3_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20884 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_arm64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package ucf. Preparing to unpack .../002-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package tex-common. Preparing to unpack .../003-tex-common_6.16_all.deb ... Unpacking tex-common (6.16) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.39-3+deb11u1_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3+deb11u1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../005-libmagic1_1%3a5.39-3+deb11u1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3+deb11u1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.39-3+deb11u1_arm64.deb ... Unpacking file (1:5.39-3+deb11u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../008-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../009-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../010-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../011-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../012-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../013-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../014-d-shlibs_0.98_all.deb ... Unpacking d-shlibs (0.98) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../015-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../016-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../017-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../018-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../019-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../020-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../021-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../022-libelf1_0.183-1_arm64.deb ... Unpacking libelf1:arm64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../023-dwz_0.13+20210201-1_arm64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../024-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../025-libxml2_2.9.10+dfsg-6.7+deb11u4_arm64.deb ... Unpacking libxml2:arm64 (2.9.10+dfsg-6.7+deb11u4) ... Selecting previously unselected package gettext. Preparing to unpack .../026-gettext_0.21-4_arm64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../027-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../028-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../029-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package dh-linktree. Preparing to unpack .../030-dh-linktree_0.8_all.deb ... Unpacking dh-linktree (0.8) ... Selecting previously unselected package libmd0:arm64. Preparing to unpack .../031-libmd0_1.0.3-3_arm64.deb ... Unpacking libmd0:arm64 (1.0.3-3) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../032-libbsd0_0.11.3-1+deb11u1_arm64.deb ... Unpacking libbsd0:arm64 (0.11.3-1+deb11u1) ... Selecting previously unselected package libedit2:arm64. Preparing to unpack .../033-libedit2_3.1-20191231-2+b1_arm64.deb ... Unpacking libedit2:arm64 (3.1-20191231-2+b1) ... Selecting previously unselected package libz3-4:arm64. Preparing to unpack .../034-libz3-4_4.8.10-1_arm64.deb ... Unpacking libz3-4:arm64 (4.8.10-1) ... Selecting previously unselected package libllvm11:arm64. Preparing to unpack .../035-libllvm11_1%3a11.0.1-2_arm64.deb ... Unpacking libllvm11:arm64 (1:11.0.1-2) ... Selecting previously unselected package libclang-cpp11. Preparing to unpack .../036-libclang-cpp11_1%3a11.0.1-2_arm64.deb ... Unpacking libclang-cpp11 (1:11.0.1-2) ... Selecting previously unselected package libclang1-11. Preparing to unpack .../037-libclang1-11_1%3a11.0.1-2_arm64.deb ... Unpacking libclang1-11 (1:11.0.1-2) ... Selecting previously unselected package doxygen. Preparing to unpack .../038-doxygen_1.9.1-1_arm64.deb ... Unpacking doxygen (1.9.1-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../039-libbrotli1_1.0.9-2+b2_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b2) ... Selecting previously unselected package libpng16-16:arm64. Preparing to unpack .../040-libpng16-16_1.6.37-3_arm64.deb ... Unpacking libpng16-16:arm64 (1.6.37-3) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../041-libfreetype6_2.10.4+dfsg-1+deb11u1_arm64.deb ... Unpacking libfreetype6:arm64 (2.10.4+dfsg-1+deb11u1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../042-fonts-dejavu-core_2.37-2_all.deb ... Unpacking fonts-dejavu-core (2.37-2) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../043-fontconfig-config_2.13.1-4.2_all.deb ... Unpacking fontconfig-config (2.13.1-4.2) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../044-libfontconfig1_2.13.1-4.2_arm64.deb ... Unpacking libfontconfig1:arm64 (2.13.1-4.2) ... Selecting previously unselected package fontconfig. Preparing to unpack .../045-fontconfig_2.13.1-4.2_arm64.deb ... Unpacking fontconfig (2.13.1-4.2) ... Selecting previously unselected package fonts-lmodern. Preparing to unpack .../046-fonts-lmodern_2.004.5-6.1_all.deb ... Unpacking fonts-lmodern (2.004.5-6.1) ... Selecting previously unselected package libann0. Preparing to unpack .../047-libann0_1.1.2+doc-7_arm64.deb ... Unpacking libann0 (1.1.2+doc-7) ... Selecting previously unselected package libcdt5:arm64. Preparing to unpack .../048-libcdt5_2.42.2-5_arm64.deb ... Unpacking libcdt5:arm64 (2.42.2-5) ... Selecting previously unselected package libcgraph6:arm64. Preparing to unpack .../049-libcgraph6_2.42.2-5_arm64.deb ... Unpacking libcgraph6:arm64 (2.42.2-5) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../050-libjpeg62-turbo_1%3a2.0.6-4_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.0.6-4) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../051-libdeflate0_1.7-1_arm64.deb ... Unpacking libdeflate0:arm64 (1.7-1) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../052-libjbig0_2.1-3.1+b2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-3.1+b2) ... Selecting previously unselected package libwebp6:arm64. Preparing to unpack .../053-libwebp6_0.6.1-2.1+deb11u2_arm64.deb ... Unpacking libwebp6:arm64 (0.6.1-2.1+deb11u2) ... Selecting previously unselected package libtiff5:arm64. Preparing to unpack .../054-libtiff5_4.2.0-1+deb11u4_arm64.deb ... Unpacking libtiff5:arm64 (4.2.0-1+deb11u4) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../055-libxau6_1%3a1.0.9-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.9-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../056-libxdmcp6_1%3a1.1.2-3_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../057-libxcb1_1.14-3_arm64.deb ... Unpacking libxcb1:arm64 (1.14-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../058-libx11-data_2%3a1.7.2-1+deb11u1_all.deb ... Unpacking libx11-data (2:1.7.2-1+deb11u1) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../059-libx11-6_2%3a1.7.2-1+deb11u1_arm64.deb ... Unpacking libx11-6:arm64 (2:1.7.2-1+deb11u1) ... Selecting previously unselected package libxpm4:arm64. Preparing to unpack .../060-libxpm4_1%3a3.5.12-1.1~deb11u1_arm64.deb ... Unpacking libxpm4:arm64 (1:3.5.12-1.1~deb11u1) ... Selecting previously unselected package libgd3:arm64. Preparing to unpack .../061-libgd3_2.3.0-2_arm64.deb ... Unpacking libgd3:arm64 (2.3.0-2) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../062-libglib2.0-0_2.66.8-1_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.66.8-1) ... Selecting previously unselected package libgts-0.7-5:arm64. Preparing to unpack .../063-libgts-0.7-5_0.7.6+darcs121130-4+b1_arm64.deb ... Unpacking libgts-0.7-5:arm64 (0.7.6+darcs121130-4+b1) ... Selecting previously unselected package libpixman-1-0:arm64. Preparing to unpack .../064-libpixman-1-0_0.40.0-1.1~deb11u1_arm64.deb ... Unpacking libpixman-1-0:arm64 (0.40.0-1.1~deb11u1) ... Selecting previously unselected package libxcb-render0:arm64. Preparing to unpack .../065-libxcb-render0_1.14-3_arm64.deb ... Unpacking libxcb-render0:arm64 (1.14-3) ... Selecting previously unselected package libxcb-shm0:arm64. Preparing to unpack .../066-libxcb-shm0_1.14-3_arm64.deb ... Unpacking libxcb-shm0:arm64 (1.14-3) ... Selecting previously unselected package libxext6:arm64. Preparing to unpack .../067-libxext6_2%3a1.3.3-1.1_arm64.deb ... Unpacking libxext6:arm64 (2:1.3.3-1.1) ... Selecting previously unselected package libxrender1:arm64. Preparing to unpack .../068-libxrender1_1%3a0.9.10-1_arm64.deb ... Unpacking libxrender1:arm64 (1:0.9.10-1) ... Selecting previously unselected package libcairo2:arm64. Preparing to unpack .../069-libcairo2_1.16.0-5_arm64.deb ... Unpacking libcairo2:arm64 (1.16.0-5) ... Selecting previously unselected package libltdl7:arm64. Preparing to unpack .../070-libltdl7_2.4.6-15_arm64.deb ... Unpacking libltdl7:arm64 (2.4.6-15) ... Selecting previously unselected package libfribidi0:arm64. Preparing to unpack .../071-libfribidi0_1.0.8-2+deb11u1_arm64.deb ... Unpacking libfribidi0:arm64 (1.0.8-2+deb11u1) ... Selecting previously unselected package libgraphite2-3:arm64. Preparing to unpack .../072-libgraphite2-3_1.3.14-1_arm64.deb ... Unpacking libgraphite2-3:arm64 (1.3.14-1) ... Selecting previously unselected package libharfbuzz0b:arm64. Preparing to unpack .../073-libharfbuzz0b_2.7.4-1_arm64.deb ... Unpacking libharfbuzz0b:arm64 (2.7.4-1) ... Selecting previously unselected package libthai-data. Preparing to unpack .../074-libthai-data_0.1.28-3_all.deb ... Unpacking libthai-data (0.1.28-3) ... Selecting previously unselected package libdatrie1:arm64. Preparing to unpack .../075-libdatrie1_0.2.13-1_arm64.deb ... Unpacking libdatrie1:arm64 (0.2.13-1) ... Selecting previously unselected package libthai0:arm64. Preparing to unpack .../076-libthai0_0.1.28-3_arm64.deb ... Unpacking libthai0:arm64 (0.1.28-3) ... Selecting previously unselected package libpango-1.0-0:arm64. Preparing to unpack .../077-libpango-1.0-0_1.46.2-3_arm64.deb ... Unpacking libpango-1.0-0:arm64 (1.46.2-3) ... Selecting previously unselected package libpangoft2-1.0-0:arm64. Preparing to unpack .../078-libpangoft2-1.0-0_1.46.2-3_arm64.deb ... Unpacking libpangoft2-1.0-0:arm64 (1.46.2-3) ... Selecting previously unselected package libpangocairo-1.0-0:arm64. Preparing to unpack .../079-libpangocairo-1.0-0_1.46.2-3_arm64.deb ... Unpacking libpangocairo-1.0-0:arm64 (1.46.2-3) ... Selecting previously unselected package libpathplan4:arm64. Preparing to unpack .../080-libpathplan4_2.42.2-5_arm64.deb ... Unpacking libpathplan4:arm64 (2.42.2-5) ... Selecting previously unselected package libgvc6. Preparing to unpack .../081-libgvc6_2.42.2-5_arm64.deb ... Unpacking libgvc6 (2.42.2-5) ... Selecting previously unselected package libgvpr2:arm64. Preparing to unpack .../082-libgvpr2_2.42.2-5_arm64.deb ... Unpacking libgvpr2:arm64 (2.42.2-5) ... Selecting previously unselected package liblab-gamut1:arm64. Preparing to unpack .../083-liblab-gamut1_2.42.2-5_arm64.deb ... Unpacking liblab-gamut1:arm64 (2.42.2-5) ... Selecting previously unselected package x11-common. Preparing to unpack .../084-x11-common_1%3a7.7+22_all.deb ... Unpacking x11-common (1:7.7+22) ... Selecting previously unselected package libice6:arm64. Preparing to unpack .../085-libice6_2%3a1.0.10-1_arm64.deb ... Unpacking libice6:arm64 (2:1.0.10-1) ... Selecting previously unselected package libsm6:arm64. Preparing to unpack .../086-libsm6_2%3a1.2.3-1_arm64.deb ... Unpacking libsm6:arm64 (2:1.2.3-1) ... Selecting previously unselected package libxt6:arm64. Preparing to unpack .../087-libxt6_1%3a1.2.0-1_arm64.deb ... Unpacking libxt6:arm64 (1:1.2.0-1) ... Selecting previously unselected package libxmu6:arm64. Preparing to unpack .../088-libxmu6_2%3a1.1.2-2+b3_arm64.deb ... Unpacking libxmu6:arm64 (2:1.1.2-2+b3) ... Selecting previously unselected package libxaw7:arm64. Preparing to unpack .../089-libxaw7_2%3a1.0.13-1.1_arm64.deb ... Unpacking libxaw7:arm64 (2:1.0.13-1.1) ... Selecting previously unselected package graphviz. Preparing to unpack .../090-graphviz_2.42.2-5_arm64.deb ... Unpacking graphviz (2.42.2-5) ... Selecting previously unselected package libapache-pom-java. Preparing to unpack .../091-libapache-pom-java_18-1_all.deb ... Unpacking libapache-pom-java (18-1) ... Selecting previously unselected package libcommons-parent-java. Preparing to unpack .../092-libcommons-parent-java_43-1_all.deb ... Unpacking libcommons-parent-java (43-1) ... Selecting previously unselected package libcommons-logging-java. Preparing to unpack .../093-libcommons-logging-java_1.2-2_all.deb ... Unpacking libcommons-logging-java (1.2-2) ... Selecting previously unselected package libfontbox-java. Preparing to unpack .../094-libfontbox-java_1%3a1.8.16-2_all.deb ... Unpacking libfontbox-java (1:1.8.16-2) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../095-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ... Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../096-libjs-underscore_1.9.1~dfsg-3_all.deb ... Unpacking libjs-underscore (1.9.1~dfsg-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../097-libjs-sphinxdoc_3.4.3-2_all.deb ... Unpacking libjs-sphinxdoc (3.4.3-2) ... Selecting previously unselected package libkpathsea6:arm64. Preparing to unpack .../098-libkpathsea6_2020.20200327.54578-7+deb11u1_arm64.deb ... Unpacking libkpathsea6:arm64 (2020.20200327.54578-7+deb11u1) ... Selecting previously unselected package libpaper1:arm64. Preparing to unpack .../099-libpaper1_1.1.28+b1_arm64.deb ... Unpacking libpaper1:arm64 (1.1.28+b1) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../100-libpaper-utils_1.1.28+b1_arm64.deb ... Unpacking libpaper-utils (1.1.28+b1) ... Selecting previously unselected package libpdfbox-java. Preparing to unpack .../101-libpdfbox-java_1%3a1.8.16-2_all.deb ... Unpacking libpdfbox-java (1:1.8.16-2) ... Selecting previously unselected package libptexenc1:arm64. Preparing to unpack .../102-libptexenc1_2020.20200327.54578-7+deb11u1_arm64.deb ... Unpacking libptexenc1:arm64 (2020.20200327.54578-7+deb11u1) ... Selecting previously unselected package libsynctex2:arm64. Preparing to unpack .../103-libsynctex2_2020.20200327.54578-7+deb11u1_arm64.deb ... Unpacking libsynctex2:arm64 (2020.20200327.54578-7+deb11u1) ... Selecting previously unselected package libteckit0:arm64. Preparing to unpack .../104-libteckit0_2.5.10+ds1-3_arm64.deb ... Unpacking libteckit0:arm64 (2.5.10+ds1-3) ... Selecting previously unselected package libtexlua53:arm64. Preparing to unpack .../105-libtexlua53_2020.20200327.54578-7+deb11u1_arm64.deb ... Unpacking libtexlua53:arm64 (2020.20200327.54578-7+deb11u1) ... Selecting previously unselected package libxi6:arm64. Preparing to unpack .../106-libxi6_2%3a1.7.10-1_arm64.deb ... Unpacking libxi6:arm64 (2:1.7.10-1) ... Selecting previously unselected package libzzip-0-13:arm64. Preparing to unpack .../107-libzzip-0-13_0.13.62-3.3+deb11u1_arm64.deb ... Unpacking libzzip-0-13:arm64 (0.13.62-3.3+deb11u1) ... Selecting previously unselected package preview-latex-style. Preparing to unpack .../108-preview-latex-style_12.2-1_all.deb ... Unpacking preview-latex-style (12.2-1) ... Selecting previously unselected package sphinx-common. Preparing to unpack .../109-sphinx-common_3.4.3-2_all.deb ... Unpacking sphinx-common (3.4.3-2) ... Selecting previously unselected package t1utils. Preparing to unpack .../110-t1utils_1.41-4_arm64.deb ... Unpacking t1utils (1.41-4) ... Selecting previously unselected package texlive-binaries. Preparing to unpack .../111-texlive-binaries_2020.20200327.54578-7+deb11u1_arm64.deb ... Unpacking texlive-binaries (2020.20200327.54578-7+deb11u1) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../112-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package texlive-base. Preparing to unpack .../113-texlive-base_2020.20210202-3_all.deb ... Unpacking texlive-base (2020.20210202-3) ... Selecting previously unselected package texlive-fonts-recommended. Preparing to unpack .../114-texlive-fonts-recommended_2020.20210202-3_all.deb ... Unpacking texlive-fonts-recommended (2020.20210202-3) ... Selecting previously unselected package texlive-latex-base. Preparing to unpack .../115-texlive-latex-base_2020.20210202-3_all.deb ... Unpacking texlive-latex-base (2020.20210202-3) ... Selecting previously unselected package texlive-latex-recommended. Preparing to unpack .../116-texlive-latex-recommended_2020.20210202-3_all.deb ... Unpacking texlive-latex-recommended (2020.20210202-3) ... Selecting previously unselected package texlive-pictures. Preparing to unpack .../117-texlive-pictures_2020.20210202-3_all.deb ... Unpacking texlive-pictures (2020.20210202-3) ... Selecting previously unselected package texlive-latex-extra. Preparing to unpack .../118-texlive-latex-extra_2020.20210202-3_all.deb ... Unpacking texlive-latex-extra (2020.20210202-3) ... Selecting previously unselected package texlive-plain-generic. Preparing to unpack .../119-texlive-plain-generic_2020.20210202-3_all.deb ... Unpacking texlive-plain-generic (2020.20210202-3) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:arm64 (1.5.3-1) ... Setting up libgraphite2-3:arm64 (1.3.14-1) ... Setting up libpixman-1-0:arm64 (0.40.0-1.1~deb11u1) ... Setting up libxau6:arm64 (1:1.0.9-1) ... Setting up bsdextrautils (2.36.1-8+deb11u1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libdatrie1:arm64 (0.2.13-1) ... Setting up libmagic-mgc (1:5.39-3+deb11u1) ... Setting up libtexlua53:arm64 (2020.20200327.54578-7+deb11u1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:arm64 (2.66.8-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b2) ... Setting up libfontbox-java (1:1.8.16-2) ... Setting up liblab-gamut1:arm64 (2.42.2-5) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libmagic1:arm64 (1:5.39-3+deb11u1) ... Setting up libdeflate0:arm64 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up libzzip-0-13:arm64 (0.13.62-3.3+deb11u1) ... Setting up file (1:5.39-3+deb11u1) ... Setting up libjbig0:arm64 (2.1-3.1+b2) ... Setting up tzdata (2021a-1+deb11u10) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Jan 6 20:50:12 UTC 2024. Universal Time is now: Sat Jan 6 20:50:12 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgts-0.7-5:arm64 (0.7.6+darcs121130-4+b1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libz3-4:arm64 (4.8.10-1) ... Setting up libjpeg62-turbo:arm64 (1:2.0.6-4) ... Setting up libx11-data (2:1.7.2-1+deb11u1) ... Setting up libteckit0:arm64 (2.5.10+ds1-3) ... Setting up libpathplan4:arm64 (2.42.2-5) ... Setting up libapache-pom-java (18-1) ... Setting up libann0 (1.1.2+doc-7) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up libfribidi0:arm64 (1.0.8-2+deb11u1) ... Setting up t1utils (1.41-4) ... Setting up libpng16-16:arm64 (1.6.37-3) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:arm64 (0.6.1-2.1+deb11u2) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up d-shlibs (0.98) ... Setting up libltdl7:arm64 (2.4.6-15) ... Setting up libkpathsea6:arm64 (2020.20200327.54578-7+deb11u1) ... Setting up libmd0:arm64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libmpdec3:arm64 (2.5.1-1) ... Setting up fonts-lmodern (2.004.5-6.1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libthai-data (0.1.28-3) ... Setting up libcdt5:arm64 (2.42.2-5) ... Setting up libcgraph6:arm64 (2.42.2-5) ... Setting up libtiff5:arm64 (4.2.0-1+deb11u4) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libbsd0:arm64 (0.11.3-1+deb11u1) ... Setting up libelf1:arm64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libsynctex2:arm64 (2020.20200327.54578-7+deb11u1) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libice6:arm64 (2:1.0.10-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up libxcb1:arm64 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up libpdfbox-java (1:1.8.16-2) ... Setting up libtool (2.4.6-15) ... Setting up libxcb-render0:arm64 (1.14-3) ... Setting up libedit2:arm64 (3.1-20191231-2+b1) ... Setting up libreadline8:arm64 (8.1-1) ... Setting up libcommons-parent-java (43-1) ... Setting up libcommons-logging-java (1.2-2) ... Setting up m4 (1.4.18-5) ... Setting up libxcb-shm0:arm64 (1.14-3) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libthai0:arm64 (0.1.28-3) ... Setting up libllvm11:arm64 (1:11.0.1-2) ... Setting up libptexenc1:arm64 (2020.20200327.54578-7+deb11u1) ... Setting up libfreetype6:arm64 (2.10.4+dfsg-1+deb11u1) ... Setting up libclang1-11 (1:11.0.1-2) ... Setting up ucf (3.0043) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up libgvpr2:arm64 (2.42.2-5) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libx11-6:arm64 (2:1.7.2-1+deb11u1) ... Setting up libharfbuzz0b:arm64 (2.7.4-1) ... Setting up libsm6:arm64 (2:1.2.3-1) ... Setting up libpython3.9-stdlib:arm64 (3.9.2-1) ... Setting up libpython3-stdlib:arm64 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:arm64 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libxpm4:arm64 (1:3.5.12-1.1~deb11u1) ... Setting up libxrender1:arm64 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:arm64 (2:1.3.3-1.1) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libclang-cpp11 (1:11.0.1-2) ... Setting up dh-autoreconf (20) ... Setting up tex-common (6.16) ... update-language: texlive-base not installed and configured, doing nothing! Setting up doxygen (1.9.1-1) ... Setting up sphinx-common (3.4.3-2) ... Setting up libxt6:arm64 (1:1.2.0-1) ... Setting up libfontconfig1:arm64 (2.13.1-4.2) ... Setting up python3.9 (3.9.2-1) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libxmu6:arm64 (2:1.1.2-2+b3) ... Setting up libxi6:arm64 (2:1.7.10-1) ... Setting up preview-latex-style (12.2-1) ... Setting up libpango-1.0-0:arm64 (1.46.2-3) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up libxaw7:arm64 (2:1.0.13-1.1) ... Setting up libcairo2:arm64 (1.16.0-5) ... Setting up libgd3:arm64 (2.3.0-2) ... Setting up texlive-binaries (2020.20200327.54578-7+deb11u1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libpangoft2-1.0-0:arm64 (1.46.2-3) ... Setting up texlive-base (2020.20210202-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up libpangocairo-1.0-0:arm64 (1.46.2-3) ... Setting up dh-linktree (0.8) ... Setting up texlive-plain-generic (2020.20210202-3) ... Setting up texlive-latex-base (2020.20210202-3) ... Setting up texlive-latex-recommended (2020.20210202-3) ... Setting up libgvc6 (2.42.2-5) ... Setting up texlive-pictures (2020.20210202-3) ... Setting up texlive-fonts-recommended (2020.20210202-3) ... Setting up graphviz (2.42.2-5) ... Setting up texlive-latex-extra (2020.20210202-3) ... Processing triggers for libc-bin (2.31-13+deb11u6) ... Processing triggers for tex-common (6.16) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1063913/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for bullseye I: user script /srv/workspace/pbuilder/1063913/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/librostlab-1.0.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../librostlab_1.0.20-10_source.changes dpkg-buildpackage: info: source package librostlab dpkg-buildpackage: info: source version 1.0.20-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with linktree dh_clean debian/rules binary dh binary --with linktree dh_update_autotools_config dh_autoreconf configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5360: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:785: _LT_LANG is expanded from... m4/libtool.m4:768: LT_LANG is expanded from... m4/libtool.m4:796: _LT_LANG_DEFAULT_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5360: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:785: _LT_LANG is expanded from... m4/libtool.m4:768: LT_LANG is expanded from... m4/libtool.m4:796: _LT_LANG_DEFAULT_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5360: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:785: _LT_LANG is expanded from... m4/libtool.m4:768: LT_LANG is expanded from... m4/libtool.m4:796: _LT_LANG_DEFAULT_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:7: installing './compile' configure.ac:5: installing './missing' lib/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' dh_auto_configure -- --enable-doxygen-dot --enable-doxygen-pdf ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-doxygen-dot --enable-doxygen-pdf checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for doxygen... /usr/bin/doxygen checking for perl... /usr/bin/perl checking for dot... /usr/bin/dot checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for egrep... /bin/egrep checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Makefile config.status: creating lib/Doxyfile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' /usr/bin/make -C lib doxygen-doc make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' rm -rf ../doxygen-doc SRCDIR='.' PROJECT='librostlab' DOCDIR='../doxygen-doc' VERSION='1.0.20' PERL_PATH='/usr/bin/perl' HAVE_DOT='YES' DOT_PATH='/usr/bin' GENERATE_MAN='NO' GENERATE_RTF='NO' GENERATE_XML='NO' GENERATE_HTMLHELP='NO' GENERATE_CHI='NO' GENERATE_HTML='YES' GENERATE_LATEX='YES' /usr/bin/doxygen ./Doxyfile warning: Tag 'SYMBOL_CACHE_SIZE' at line 290 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 490 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 761 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 847 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'USE_INLINE_TREES' at line 1032 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 1257 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 1263 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 1428 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 1450 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. Doxygen version used: 1.9.1 Notice: Output directory '../doxygen-doc' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/librostlab-1.0.20/lib/rostlab Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/aux_functions.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/aux_functions.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/blosum62.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/blosum62.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cwd_resource.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cwd_resource.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cxxgrp.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cxxgrp.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cxxpwd.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cxxpwd.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/euid_egid_resource.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/euid_egid_resource.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/file_lock_resource.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/file_lock_resource.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/mapAA2int.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/mapAA2int.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/readFasta.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/readFasta.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdexcept.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdexcept.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdio.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdio.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdlib.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdlib.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/umask_resource.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/umask_resource.h... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Computing nesting relations for classes... Associating documentation with classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file rostlab/aux_functions.h... Generating code for file rostlab/blosum62.h... Generating code for file rostlab/cwd_resource.h... Generating code for file rostlab/cxxgrp.h... Generating code for file rostlab/cxxpwd.h... Generating code for file rostlab/euid_egid_resource.h... Generating code for file rostlab/file_lock_resource.h... Generating code for file rostlab/mapAA2int.h... Generating code for file rostlab/readFasta.h... Generating code for file rostlab/rostlab_stdexcept.h... Generating code for file rostlab/rostlab_stdio.h... Generating code for file rostlab/rostlab_stdlib.h... Generating code for file rostlab/umask_resource.h... Generating file documentation... Generating docs for file rostlab/aux_functions.h... Generating docs for file rostlab/blosum62.h... Generating docs for file rostlab/cwd_resource.h... Generating docs for file rostlab/cxxgrp.h... Generating docs for file rostlab/cxxpwd.h... Generating docs for file rostlab/euid_egid_resource.h... Generating docs for file rostlab/file_lock_resource.h... Generating docs for file rostlab/mapAA2int.h... Generating docs for file rostlab/readFasta.h... Generating docs for file rostlab/rostlab_stdexcept.h... Generating docs for file rostlab/rostlab_stdio.h... Generating docs for file rostlab/rostlab_stdlib.h... Generating docs for file rostlab/umask_resource.h... Generating page documentation... Generating group documentation... Generating class documentation... Generating namespace index... Generating docs for namespace rostlab Generating docs for compound rostlab::cwd_resource... Generating docs for compound rostlab::cxx_group... Generating docs for compound rostlab::gid_not_found_error... Generating docs for compound rostlab::gname_not_found_error... Generating docs for compound rostlab::cxx_passwd... Generating docs for compound rostlab::uid_not_found_error... Generating docs for compound rostlab::uname_not_found_error... Generating docs for compound rostlab::euid_egid_resource... Generating docs for compound rostlab::file_lock_resource... Generating docs for nested compound rostlab::file_lock_resource::wouldblock... Generating docs for compound rostlab::error_backtracer... Generating docs for compound rostlab::exception... Generating docs for compound rostlab::runtime_error... Generating docs for compound rostlab::umask_resource... Generating docs for namespace rostlab::bio Generating docs for compound rostlab::bio::seq... Generating docs for namespace rostlab::bio::fmt Generating docs for compound rostlab::bio::fmt::fasta... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... Running dot... Generating dot graphs using 13 parallel threads... Running dot for graph 1/66 Running dot for graph 2/66 Running dot for graph 3/66 Running dot for graph 4/66 Running dot for graph 5/66 Running dot for graph 6/66 Running dot for graph 7/66 Running dot for graph 8/66 Running dot for graph 9/66 Running dot for graph 10/66 Running dot for graph 11/66 Running dot for graph 12/66 Running dot for graph 13/66 Running dot for graph 14/66 Running dot for graph 15/66 Running dot for graph 16/66 Running dot for graph 17/66 Running dot for graph 18/66 Running dot for graph 19/66 Running dot for graph 20/66 Running dot for graph 21/66 Running dot for graph 22/66 Running dot for graph 23/66 Running dot for graph 24/66 Running dot for graph 25/66 Running dot for graph 26/66 Running dot for graph 27/66 Running dot for graph 28/66 Running dot for graph 29/66 Running dot for graph 30/66 Running dot for graph 31/66 Running dot for graph 32/66 Running dot for graph 33/66 Running dot for graph 34/66 Running dot for graph 35/66 Running dot for graph 36/66 Running dot for graph 37/66 Running dot for graph 38/66 Running dot for graph 39/66 Running dot for graph 40/66 Running dot for graph 41/66 Running dot for graph 42/66 Running dot for graph 43/66 Running dot for graph 44/66 Running dot for graph 45/66 Running dot for graph 46/66 Running dot for graph 47/66 Running dot for graph 48/66 Running dot for graph 49/66 Running dot for graph 50/66 Running dot for graph 51/66 Running dot for graph 52/66 Running dot for graph 53/66 Running dot for graph 54/66 Running dot for graph 55/66 Running dot for graph 56/66 Running dot for graph 57/66 Running dot for graph 58/66 Running dot for graph 59/66 Running dot for graph 60/66 Running dot for graph 61/66 Running dot for graph 62/66 Running dot for graph 63/66 Running dot for graph 64/66 Running dot for graph 65/66 Running dot for graph 66/66 Patching output file 1/41 Patching output file 2/41 Patching output file 3/41 Patching output file 4/41 Patching output file 5/41 Patching output file 6/41 Patching output file 7/41 Patching output file 8/41 Patching output file 9/41 Patching output file 10/41 Patching output file 11/41 Patching output file 12/41 Patching output file 13/41 Patching output file 14/41 Patching output file 15/41 Patching output file 16/41 Patching output file 17/41 Patching output file 18/41 Patching output file 19/41 Patching output file 20/41 Patching output file 21/41 Patching output file 22/41 Patching output file 23/41 Patching output file 24/41 Patching output file 25/41 Patching output file 26/41 Patching output file 27/41 Patching output file 28/41 Patching output file 29/41 Patching output file 30/41 Patching output file 31/41 Patching output file 32/41 Patching output file 33/41 Patching output file 34/41 Patching output file 35/41 Patching output file 36/41 Patching output file 37/41 Patching output file 38/41 Patching output file 39/41 Patching output file 40/41 Patching output file 41/41 lookup cache used 177/65536 hits=508 misses=191 finished... cd ../doxygen-doc/latex; \ rm -f *.aux *.toc *.idx *.ind *.ilg *.log *.out; \ /usr/bin/pdflatex refman.tex; \ /usr/bin/makeindex refman.idx; \ /usr/bin/pdflatex refman.tex; \ countdown=5; \ while /bin/egrep 'Rerun (LaTeX|to get cross-references right)' \ refman.log > /dev/null 2>&1 \ && test $countdown -gt 0; do \ /usr/bin/pdflatex refman.tex; \ countdown=`expr $countdown - 1`; \ done; \ mv refman.pdf ../librostlab.pdf This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./refman.tex LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-01-09> xparse <2020-03-03> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array-2016-10-06.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/fixltx2e.sty Package fixltx2e Warning: fixltx2e is not required with releases after 2015 (fixltx2e) All fixes are now in the LaTeX kernel. (fixltx2e) See the latexrelease package for details. ) (./doxygen.sty (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/calc.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) (/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty)) (./longtable_doxygen.sty) (./tabu_doxygen.sty (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty)) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/tabularx.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/multirow/multirow.sty) (/usr/share/texlive/texmf-dist/tex/latex/hanging/hanging.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifpdf.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/adjustbox/adjustbox.sty (/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex))) (/usr/share/texlive/texmf-dist/tex/latex/adjustbox/adjcalc.sty) (/usr/share/texlive/texmf-dist/tex/latex/adjustbox/trimclip.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/collectbox/collectbox.sty) (/usr/share/texlive/texmf-dist/tex/latex/adjustbox/tc-pdftex.def)) (/usr/share/texlive/texmf-dist/tex/latex/ifoddpage/ifoddpage.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/latex/stackengine/stackengine.sty (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/generic/listofitems/listofitems.sty (/usr/share/texlive/texmf-dist/tex/generic/listofitems/listofitems.tex))) (/usr/share/texlive/texmf-dist/tex/generic/ulem/ulem.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/wasysym/wasysym.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/helvet.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/courier.sty) (/usr/share/texlive/texmf-dist/tex/latex/sectsty/sectsty.sty LaTeX Warning: Command \underbar has changed. Check if current package is valid. LaTeX Warning: Command \underline has changed. Check if current package is valid. ) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/natbib/natbib.sty) (/usr/share/texlive/texmf-dist/tex/latex/tocloft/tocloft.sty) Writing index file refman.idx (/usr/share/texlive/texmf-dist/tex/latex/newunicodechar/newunicodechar.sty) Package newunicodechar Warning: Redefining Unicode character on input line 115. Package newunicodechar Warning: Redefining Unicode character on input line 116. (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/backref.sty (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/caption/caption.sty (/usr/share/texlive/texmf-dist/tex/latex/caption/caption3.sty) (/usr/share/texlive/texmf-dist/tex/latex/caption/ltcaption.sty)) (/usr/share/texlive/texmf-dist/tex/latex/etoc/etoc.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file refman.aux. (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) No file refman.toc. (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) (/usr/share/texlive/texmf-dist/tex/latex/wasysym/uwasy.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] Chapter 1. (./namespaces.tex LaTeX Warning: Reference `namespacerostlab' on page 1 undefined on input line 3 . LaTeX Warning: Reference `namespacerostlab_1_1bio' on page 1 undefined on input line 4. LaTeX Warning: Reference `namespacerostlab_1_1bio_1_1fmt' on page 1 undefined o n input line 5. ) [1] [2] Chapter 2. (./hierarchy.tex LaTeX Warning: Reference `classrostlab_1_1cwd__resource' on page 3 undefined on input line 3. LaTeX Warning: Reference `structrostlab_1_1cxx__group' on page 3 undefined on i nput line 4. LaTeX Warning: Reference `structrostlab_1_1cxx__passwd' on page 3 undefined on input line 5. LaTeX Warning: Reference `classrostlab_1_1error__backtracer' on page 3 undefine d on input line 6. LaTeX Warning: Reference `classrostlab_1_1exception' on page 3 undefined on inp ut line 8. LaTeX Warning: Reference `classrostlab_1_1file__lock__resource_1_1wouldblock' o n page 3 undefined on input line 10. LaTeX Warning: Reference `classrostlab_1_1runtime__error' on page 3 undefined o n input line 12. LaTeX Warning: Reference `classrostlab_1_1gid__not__found__error' on page 3 und efined on input line 14. LaTeX Warning: Reference `classrostlab_1_1gname__not__found__error' on page 3 u ndefined on input line 15. LaTeX Warning: Reference `classrostlab_1_1uid__not__found__error' on page 3 und efined on input line 16. LaTeX Warning: Reference `classrostlab_1_1uname__not__found__error' on page 3 u ndefined on input line 17. LaTeX Warning: Reference `classrostlab_1_1euid__egid__resource' on page 3 undef ined on input line 20. LaTeX Warning: Reference `classrostlab_1_1exception' on page 3 undefined on inp ut line 22. LaTeX Warning: Reference `classrostlab_1_1bio_1_1fmt_1_1fasta' on page 3 undefi ned on input line 24. LaTeX Warning: Reference `classrostlab_1_1file__lock__resource' on page 3 undef ined on input line 25. LaTeX Warning: Reference `classrostlab_1_1runtime__error' on page 3 undefined o n input line 27. LaTeX Warning: Reference `classrostlab_1_1bio_1_1seq' on page 3 undefined on in put line 29. LaTeX Warning: Reference `classrostlab_1_1umask__resource' on page 3 undefined on input line 30. ) [3] [4] Chapter 3. (./annotated.tex LaTeX Warning: Reference `classrostlab_1_1cwd__resource' on page 5 undefined on input line 3. LaTeX Warning: Reference `structrostlab_1_1cxx__group' on page 5 undefined on i nput line 4. LaTeX Warning: Reference `structrostlab_1_1cxx__passwd' on page 5 undefined on input line 5. LaTeX Warning: Reference `classrostlab_1_1error__backtracer' on page 5 undefine d on input line 6. LaTeX Warning: Reference `classrostlab_1_1euid__egid__resource' on page 5 undef ined on input line 7. LaTeX Warning: Reference `classrostlab_1_1exception' on page 5 undefined on inp ut line 8. LaTeX Warning: Reference `classrostlab_1_1bio_1_1fmt_1_1fasta' on page 5 undefi ned on input line 9. LaTeX Warning: Reference `classrostlab_1_1file__lock__resource' on page 5 undef ined on input line 10. LaTeX Warning: Reference `classrostlab_1_1gid__not__found__error' on page 5 und efined on input line 11. LaTeX Warning: Reference `classrostlab_1_1gname__not__found__error' on page 5 u ndefined on input line 12. LaTeX Warning: Reference `classrostlab_1_1runtime__error' on page 5 undefined o n input line 13. LaTeX Warning: Reference `classrostlab_1_1bio_1_1seq' on page 5 undefined on in put line 14. LaTeX Warning: Reference `classrostlab_1_1uid__not__found__error' on page 5 und efined on input line 15. LaTeX Warning: Reference `classrostlab_1_1umask__resource' on page 5 undefined on input line 16. LaTeX Warning: Reference `classrostlab_1_1uname__not__found__error' on page 5 u ndefined on input line 17. LaTeX Warning: Reference `classrostlab_1_1file__lock__resource_1_1wouldblock' o n page 5 undefined on input line 18. ) [5] [6] Chapter 4. (./files.tex LaTeX Warning: Reference `aux__functions_8h' on page 7 undefined on input line 3. LaTeX Warning: Reference `blosum62_8h' on page 7 undefined on input line 4. LaTeX Warning: Reference `cwd__resource_8h' on page 7 undefined on input line 5 . LaTeX Warning: Reference `cxxgrp_8h' on page 7 undefined on input line 6. LaTeX Warning: Reference `cxxpwd_8h' on page 7 undefined on input line 7. LaTeX Warning: Reference `euid__egid__resource_8h' on page 7 undefined on input line 8. LaTeX Warning: Reference `file__lock__resource_8h' on page 7 undefined on input line 9. LaTeX Warning: Reference `mapAA2int_8h' on page 7 undefined on input line 10. LaTeX Warning: Reference `readFasta_8h' on page 7 undefined on input line 11. LaTeX Warning: Reference `rostlab__stdexcept_8h' on page 7 undefined on input l ine 12. LaTeX Warning: Reference `rostlab__stdio_8h' on page 7 undefined on input line 13. LaTeX Warning: Reference `rostlab__stdlib_8h' on page 7 undefined on input line 14. LaTeX Warning: Reference `umask__resource_8h' on page 7 undefined on input line 15. ) [7] [8] Chapter 5. (./namespacerostlab.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [9] [10] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [11] [12] [13] [14] [15] [16] [17]) (./namespacerostlab_1_1bio.tex) (./namespacerostlab_1_1bio_1_1fmt.tex) [18] Chapter 6. (./classrostlab_1_1cwd__resource.tex [19]) (./structrostlab_1_1cxx__group.tex [20] [21]) (./structrostlab_1_1cxx__passwd.tex [22] [23]) (./classrostlab_1_1error__backtracer.tex [24] <./classrostlab_1_1error__backtra cer__inherit__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1error__backtracer__in herit__graph.pdf): PDF inclusion: multiple pdfs with page group included in a s ingle page > [25]) (./classrostlab_1_1euid__egid__resource.tex [26]) (./classrostlab_1_1exception.tex <./classrostlab_1_1exception__inherit__graph.p df pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1exception__inherit__g raph.pdf): PDF inclusion: multiple pdfs with page group included in a single pa ge > <./classrostlab_1_1exception__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1exception__coll__grap h.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [27]) (./classrostlab_1_1bio_1_1fmt_1_1fasta.tex) (./classrostlab_1_1file__lock__resource.tex [28] [29] [30]) (./classrostlab_1_1gid__not__found__error.tex <./classrostlab_1_1gid__not__foun d__error__inherit__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gid__not__found__erro r__inherit__graph.pdf): PDF inclusion: multiple pdfs with page group included i n a single page > [31] <./classrostlab_1_1gid__not__found__error__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gid__not__found__erro r__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [32]) (./classrostlab_1_1gname__not__found__error.tex <./classrostlab_1_1gnam e__not__found__error__inherit__graph.pdf> <./classrostlab_1_1gname__not__found_ _error__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gname__not__found__er ror__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [33]) (./classrostlab_1_1runtime__error.tex <./classrostlab_1_1runtime__error __inherit__graph.pdf> [34] <./classrostlab_1_1runtime__error__coll__graph.pdf> [35]) (./classrostlab_1_1bio_1_1seq.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. [36]) (./classrostlab_1_1uid__not__found__error.tex <./classrostlab_1_1uid__not __found__error__inherit__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uid__not__found__erro r__inherit__graph.pdf): PDF inclusion: multiple pdfs with page group included i n a single page > <./classrostlab_1_1uid__not__found__error__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uid__not__found__erro r__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [37] [38]) (./classrostlab_1_1umask__resource.tex) (./classrostlab_1_1uname__not__found__error.tex <./classrostlab_1_1uname__not__ found__error__inherit__graph.pdf> [39] <./classrostlab_1_1uname__not__found__er ror__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uname__not__found__er ror__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [40]) (./classrostlab_1_1file__lock__resource_1_1wouldblock.tex <./classrostl ab_1_1file__lock__resource_1_1wouldblock__inherit__graph.pdf> <./classrostlab_1 _1file__lock__resource_1_1wouldblock__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1file__lock__resource_ 1_1wouldblock__coll__graph.pdf): PDF inclusion: multiple pdfs with page group i ncluded in a single page > [41]) [42] Chapter 7. (./aux__functions_8h.tex <./aux__functions_8h__incl.pdf> [43]) (./blosum62_8h.tex) (./cwd__resource_8h.tex <./cwd__resource_8h__incl.pdf> [44]) (./cxxgrp_8h.tex <./cxxgrp_8h__incl.pdf>) (./cxxpwd_8h.tex <./cxxpwd_8h__ incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./cxxpwd_8h__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [45]) (./euid__egid__resource_8h.tex <./euid__egid__resource_8h__incl.pdf> [46]) (./file__lock__resource_8h.tex <./file__lock__resource_8h__incl.pdf>) (./mapAA2int_8h.tex <./mapAA2int_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./mapAA2int_8h__incl.pdf): PDF inclusio n: multiple pdfs with page group included in a single page > [47]) (./readFasta_8h.tex <./readFasta_8h__incl.pdf> [48]) (./rostlab__stdexcept_8h.tex <./rostlab__stdexcept_8h__incl.pdf> <./rostlab__st dexcept_8h__dep__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./rostlab__stdexcept_8h__dep__incl.pdf) : PDF inclusion: multiple pdfs with page group included in a single page >) (./rostlab__stdio_8h.tex <./rostlab__stdio_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./rostlab__stdio_8h__incl.pdf): PDF inc lusion: multiple pdfs with page group included in a single page > [49]) (./rostlab__stdlib_8h.tex <./rostlab__stdlib_8h__incl.pdf> [50]) (./umask__resource_8h.tex <./umask__resource_8h__incl.pdf> [51]) [52] No file refman.ind. (./refman.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `refman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ){/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on refman.pdf (54 pages, 394687 bytes). Transcript written on refman.log. This is makeindex, version 2.15 [TeX Live 2020] (kpathsea + Thai support). Scanning input file refman.idx....done (200 entries accepted, 0 rejected). Sorting entries.....done (1539 comparisons). Generating output file refman.ind....done (271 lines written, 0 warnings). Output written in refman.ind. Transcript written in refman.ilg. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./refman.tex LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-01-09> xparse <2020-03-03> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array-2016-10-06.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/fixltx2e.sty Package fixltx2e Warning: fixltx2e is not required with releases after 2015 (fixltx2e) All fixes are now in the LaTeX kernel. (fixltx2e) See the latexrelease package for details. ) (./doxygen.sty (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/calc.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) (/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty)) (./longtable_doxygen.sty) (./tabu_doxygen.sty (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty)) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/tabularx.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/multirow/multirow.sty) (/usr/share/texlive/texmf-dist/tex/latex/hanging/hanging.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifpdf.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/adjustbox/adjustbox.sty (/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex))) (/usr/share/texlive/texmf-dist/tex/latex/adjustbox/adjcalc.sty) (/usr/share/texlive/texmf-dist/tex/latex/adjustbox/trimclip.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/collectbox/collectbox.sty) (/usr/share/texlive/texmf-dist/tex/latex/adjustbox/tc-pdftex.def)) (/usr/share/texlive/texmf-dist/tex/latex/ifoddpage/ifoddpage.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/latex/stackengine/stackengine.sty (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/generic/listofitems/listofitems.sty (/usr/share/texlive/texmf-dist/tex/generic/listofitems/listofitems.tex))) (/usr/share/texlive/texmf-dist/tex/generic/ulem/ulem.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/wasysym/wasysym.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/helvet.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/courier.sty) (/usr/share/texlive/texmf-dist/tex/latex/sectsty/sectsty.sty LaTeX Warning: Command \underbar has changed. Check if current package is valid. LaTeX Warning: Command \underline has changed. Check if current package is valid. ) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/natbib/natbib.sty) (/usr/share/texlive/texmf-dist/tex/latex/tocloft/tocloft.sty) Writing index file refman.idx (/usr/share/texlive/texmf-dist/tex/latex/newunicodechar/newunicodechar.sty) Package newunicodechar Warning: Redefining Unicode character on input line 115. Package newunicodechar Warning: Redefining Unicode character on input line 116. (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/backref.sty (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/caption/caption.sty (/usr/share/texlive/texmf-dist/tex/latex/caption/caption3.sty) (/usr/share/texlive/texmf-dist/tex/latex/caption/ltcaption.sty)) (/usr/share/texlive/texmf-dist/tex/latex/etoc/etoc.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./refman.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./refman.out) (./refman.out) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) (/usr/share/texlive/texmf-dist/tex/latex/wasysym/uwasy.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [1] [2] [3] [4] [5] [6] Chapter 1. (./namespaces.tex) [1] [2] Chapter 2. (./hierarchy.tex) [3] [4] Chapter 3. (./annotated.tex) [5] [6] Chapter 4. (./files.tex) [7] [8] Chapter 5. (./namespacerostlab.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [9] [10] [11] [12] [13] [14] [15] [16] [17]) (./namespacerostlab_1_1bio.tex) (./namespacerostlab_1_1bio_1_1fmt.tex) [18] Chapter 6. (./classrostlab_1_1cwd__resource.tex [19]) (./structrostlab_1_1cxx__group.tex [20] [21]) (./structrostlab_1_1cxx__passwd.tex [22] [23]) (./classrostlab_1_1error__backtracer.tex [24] <./classrostlab_1_1error__backtra cer__inherit__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1error__backtracer__in herit__graph.pdf): PDF inclusion: multiple pdfs with page group included in a s ingle page > [25]) (./classrostlab_1_1euid__egid__resource.tex [26]) (./classrostlab_1_1exception.tex <./classrostlab_1_1exception__inherit__graph.p df pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1exception__inherit__g raph.pdf): PDF inclusion: multiple pdfs with page group included in a single pa ge > <./classrostlab_1_1exception__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1exception__coll__grap h.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [27]) (./classrostlab_1_1bio_1_1fmt_1_1fasta.tex) (./classrostlab_1_1file__lock__resource.tex [28] [29] [30]) (./classrostlab_1_1gid__not__found__error.tex <./classrostlab_1_1gid__not__foun d__error__inherit__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gid__not__found__erro r__inherit__graph.pdf): PDF inclusion: multiple pdfs with page group included i n a single page > [31] <./classrostlab_1_1gid__not__found__error__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gid__not__found__erro r__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [32]) (./classrostlab_1_1gname__not__found__error.tex <./classrostlab_1_1gnam e__not__found__error__inherit__graph.pdf> <./classrostlab_1_1gname__not__found_ _error__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gname__not__found__er ror__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [33]) (./classrostlab_1_1runtime__error.tex <./classrostlab_1_1runtime__error __inherit__graph.pdf> [34] <./classrostlab_1_1runtime__error__coll__graph.pdf> [35]) (./classrostlab_1_1bio_1_1seq.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. [36]) (./classrostlab_1_1uid__not__found__error.tex <./classrostlab_1_1uid__not __found__error__inherit__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uid__not__found__erro r__inherit__graph.pdf): PDF inclusion: multiple pdfs with page group included i n a single page > <./classrostlab_1_1uid__not__found__error__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uid__not__found__erro r__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [37] [38]) (./classrostlab_1_1umask__resource.tex) (./classrostlab_1_1uname__not__found__error.tex <./classrostlab_1_1uname__not__ found__error__inherit__graph.pdf> [39] <./classrostlab_1_1uname__not__found__er ror__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uname__not__found__er ror__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [40]) (./classrostlab_1_1file__lock__resource_1_1wouldblock.tex <./classrostl ab_1_1file__lock__resource_1_1wouldblock__inherit__graph.pdf> <./classrostlab_1 _1file__lock__resource_1_1wouldblock__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1file__lock__resource_ 1_1wouldblock__coll__graph.pdf): PDF inclusion: multiple pdfs with page group i ncluded in a single page > [41]) [42] Chapter 7. (./aux__functions_8h.tex <./aux__functions_8h__incl.pdf> [43]) (./blosum62_8h.tex) (./cwd__resource_8h.tex <./cwd__resource_8h__incl.pdf> [44]) (./cxxgrp_8h.tex <./cxxgrp_8h__incl.pdf>) (./cxxpwd_8h.tex <./cxxpwd_8h__ incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./cxxpwd_8h__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [45]) (./euid__egid__resource_8h.tex <./euid__egid__resource_8h__incl.pdf> [46]) (./file__lock__resource_8h.tex <./file__lock__resource_8h__incl.pdf>) (./mapAA2int_8h.tex <./mapAA2int_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./mapAA2int_8h__incl.pdf): PDF inclusio n: multiple pdfs with page group included in a single page > [47]) (./readFasta_8h.tex <./readFasta_8h__incl.pdf> [48]) (./rostlab__stdexcept_8h.tex <./rostlab__stdexcept_8h__incl.pdf> <./rostlab__st dexcept_8h__dep__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./rostlab__stdexcept_8h__dep__incl.pdf) : PDF inclusion: multiple pdfs with page group included in a single page >) (./rostlab__stdio_8h.tex <./rostlab__stdio_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./rostlab__stdio_8h__incl.pdf): PDF inc lusion: multiple pdfs with page group included in a single page > [49]) (./rostlab__stdlib_8h.tex <./rostlab__stdlib_8h__incl.pdf> [50]) (./umask__resource_8h.tex <./umask__resource_8h__incl.pdf> [51]) [52] (./refman.ind [53] [54] [55]) (./refman.aux) Package rerunfilecheck Warning: File `refman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ){/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on refman.pdf (63 pages, 427120 bytes). Transcript written on refman.log. make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' dh_auto_build -Nlibrostlab-doc make -j12 make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' make all-recursive make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20' Making all in lib make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' make all-am make[4]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/librostlab-1.0.20=. -fstack-protector-strong -Wformat -Werror=format-security -c -o librostlab_la-blosum62.lo `test -f 'blosum62.cpp' || echo './'`blosum62.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/librostlab-1.0.20=. -fstack-protector-strong -Wformat -Werror=format-security -c blosum62.cpp -fPIC -DPIC -o .libs/librostlab_la-blosum62.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/librostlab-1.0.20=. -fstack-protector-strong -Wformat -Werror=format-security -c blosum62.cpp -o librostlab_la-blosum62.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=link g++ -Wall -g -O2 -fdebug-prefix-map=/build/reproducible-path/librostlab-1.0.20=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 3:0:0 -Wall -Wl,-z,relro -Wl,-z,now -o librostlab.la -rpath /usr/lib/aarch64-linux-gnu librostlab_la-blosum62.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/10/crtbeginS.o .libs/librostlab_la-blosum62.o -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/10/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,librostlab.so.3 -o .libs/librostlab.so.3.0.0 libtool: link: (cd ".libs" && rm -f "librostlab.so.3" && ln -s "librostlab.so.3.0.0" "librostlab.so.3") libtool: link: (cd ".libs" && rm -f "librostlab.so" && ln -s "librostlab.so.3.0.0" "librostlab.so") libtool: link: ar cr .libs/librostlab.a librostlab_la-blosum62.o libtool: link: ranlib .libs/librostlab.a libtool: link: ( cd ".libs" && rm -f "librostlab.la" && ln -s "../librostlab.la" "librostlab.la" ) make[4]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20' make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' dh_auto_test make -j12 check VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' Making check in lib make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' make check-am make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20' make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/librostlab-1.0.20/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' Making install in lib make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' make install-am make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' make[4]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' /bin/mkdir -p '/build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c librostlab.la '/build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/librostlab.so.3.0.0 /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/aarch64-linux-gnu/librostlab.so.3.0.0 libtool: install: (cd /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f librostlab.so.3.0.0 librostlab.so.3 || { rm -f librostlab.so.3 && ln -s librostlab.so.3.0.0 librostlab.so.3; }; }) libtool: install: (cd /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f librostlab.so.3.0.0 librostlab.so || { rm -f librostlab.so && ln -s librostlab.so.3.0.0 librostlab.so; }; }) libtool: install: /usr/bin/install -c .libs/librostlab.lai /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/aarch64-linux-gnu/librostlab.la libtool: install: /usr/bin/install -c .libs/librostlab.a /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/aarch64-linux-gnu/librostlab.a libtool: install: chmod 644 /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/aarch64-linux-gnu/librostlab.a libtool: install: ranlib /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/aarch64-linux-gnu/librostlab.a libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/include/rostlab' /usr/bin/install -c -m 644 rostlab/aux_functions.h rostlab/blosum62.h rostlab/cwd_resource.h rostlab/cxxgrp.h rostlab/cxxpwd.h rostlab/euid_egid_resource.h rostlab/file_lock_resource.h rostlab/mapAA2int.h rostlab/readFasta.h rostlab/rostlab_stdexcept.h rostlab/rostlab_stdio.h rostlab/rostlab_stdlib.h rostlab/umask_resource.h '/build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/include/rostlab' make[4]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20' make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' dh_install d-shlibmove --commit \ --multiarch \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/librostlab3-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/librostlab3/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/librostlab.a debian/librostlab3-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/librostlab.so debian/librostlab3-dev/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/aarch64-linux-gnu/librostlab.so.3 debian/librostlab3/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/aarch64-linux-gnu/librostlab.so.3.0.0 debian/librostlab3/usr/lib/aarch64-linux-gnu PKGDEV=librostlab3-dev PKGSHL=librostlab3 install -d -m 755 debian/librostlab3-dev/usr/include mv debian/tmp/usr/include/rostlab debian/librostlab3-dev/usr/include make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' debian/rules override_dh_installdocs make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' dh_installdocs dh_installdocs: warning: Cannot auto-detect main package for librostlab-doc. If the default is wrong, please use --doc-main-package find debian -name "*_*.md5" -delete make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' dh_installchangelogs dh_installexamples dh_perl dh_link dh_linktree dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' dh_compress -Xlibrostlab.tag make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' dh_fixperms dh_missing dh_missing: warning: usr/lib/aarch64-linux-gnu/librostlab.la exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: librostlab-doc (0), librostlab3 (0), librostlab3-dev (0) * dh_installdocs: librostlab-doc (3), librostlab3 (0), librostlab3-dev (2) * dh_installexamples: librostlab-doc (0), librostlab3 (0), librostlab3-dev (1) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. Remember to be careful with paths containing "aarch64-linux-gnu", where you might need to use a wildcard or (assuming compat 13+) e.g. ${DEB_HOST_MULTIARCH} in debian/not-installed to ensure it works on all architectures (see #961104). dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package librostlab3: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package librostlab-doc: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package librostlab-doc: substitution variable ${js:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package librostlab3: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'librostlab3' in '../librostlab3_1.0.20-10_arm64.deb'. dpkg-deb: building package 'librostlab3-dbgsym' in '../librostlab3-dbgsym_1.0.20-10_arm64.deb'. dpkg-deb: building package 'librostlab-doc' in '../librostlab-doc_1.0.20-10_all.deb'. dpkg-deb: building package 'librostlab3-dev' in '../librostlab3-dev_1.0.20-10_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../librostlab_1.0.20-10_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1063913/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1063913/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1063913 and its subdirectories I: Current time: Sun Jan 7 10:52:06 +14 2024 I: pbuilder-time-stamp: 1704574326