I: pbuilder: network access will be disabled during build I: Current time: Wed Aug 10 19:11:59 +14 2022 I: pbuilder-time-stamp: 1660108319 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libpdl-io-hdf5-perl_0.73-6.dsc] I: copying [./libpdl-io-hdf5-perl_0.73.orig.tar.gz] I: copying [./libpdl-io-hdf5-perl_0.73-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.ZXwslEfW/trustedkeys.kbx': General error gpgv: Signature made Thu Nov 19 20:17:08 2020 +14 gpgv: using RSA key 8182DE417056408D614650D16750F10AE88D4AF1 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libpdl-io-hdf5-perl_0.73-6.dsc dpkg-source: info: extracting libpdl-io-hdf5-perl in libpdl-io-hdf5-perl-0.73 dpkg-source: info: unpacking libpdl-io-hdf5-perl_0.73.orig.tar.gz dpkg-source: info: unpacking libpdl-io-hdf5-perl_0.73-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-interpreter-from-package.patch dpkg-source: info: applying clean_newFile_hd5.patch dpkg-source: info: applying support-hdf5-1.8.13.patch dpkg-source: info: applying reproducible_build.patch dpkg-source: info: applying spelling-errors.patch dpkg-source: info: applying hdf5-1.10.patch dpkg-source: info: applying hdf5-1.10.3.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/12529/tmp/hooks/D01_modify_environment starting debug: Running on codethink15-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/12529/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/12529/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/var/lib/jenkins HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=12529 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Uwe3Aasmml/pbuilderrc_SQvg --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Uwe3Aasmml/b2 --logfile b2/build.log --extrapackages usrmerge libpdl-io-hdf5-perl_0.73-6.dsc' SUDO_GID=117 SUDO_UID=110 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root USERNAME=root _='I: set' http_proxy=http://192.168.101.16:3128 I: uname -a Linux i-capture-the-hostname 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:18:37 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 22 2021 bash -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash -rwxr-xr-x 1 root root 101384 Sep 23 2020 date -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd -rwxr-xr-x 1 root root 89824 Sep 23 2020 df -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir -rwxr-xr-x 1 root root 76152 Feb 8 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 8 2021 findmnt -rwsr-xr-x 1 root root 34824 Feb 27 2021 fusermount -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe -rwxr-xr-x 1 root root 93744 Mar 3 2021 gzip -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln -rwxr-xr-x 1 root root 52720 Feb 8 2020 login -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls -rwxr-xr-x 1 root root 161960 Feb 8 2021 lsblk -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 8 2021 more -rwsr-xr-x 1 root root 51360 Feb 8 2021 mount -rwxr-xr-x 1 root root 14496 Feb 8 2021 mountpoint -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Jun 22 2021 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Aug 10 19:12 sh -> bash lrwxrwxrwx 1 root root 4 Aug 9 05:47 sh.distrib -> dash -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty -rwsr-xr-x 1 root root 67776 Feb 8 2021 su -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync -rwxr-xr-x 1 root root 535768 Feb 17 2021 tar -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch -rwxr-xr-x 1 root root 31512 Sep 23 2020 true -rwxr-xr-x 1 root root 14264 Feb 27 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 8 2021 umount -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 8 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew I: user script /srv/workspace/pbuilder/12529/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dpkg-dev (>= 1.16.1~), libhdf5-dev, pdl (>= 1:2.016), perl-xs-dev, perl:native dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on pdl (>= 1:2.016); however: Package pdl is not installed. pbuilder-satisfydepends-dummy depends on perl-xs-dev; however: Package perl-xs-dev is not installed. pbuilder-satisfydepends-dummy depends on perl:native. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgd3{a} libgfortran5{a} libgsl25{a} libgslcblas0{a} libhdf4-0-alt{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libicu67{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libncurses6{a} libperl-dev{a} libpipeline1{a} libpng16-16{a} libpod-parser-perl{a} libsigsegv2{a} libsub-override-perl{a} libsz2{a} libterm-readkey-perl{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libxpm4{a} m4{a} man-db{a} pdl{a} po-debconf{a} sensible-utils{a} ucf{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libgpm2 libltdl-dev libmail-sendmail-perl libterm-readline-gnu-perl libterm-readline-perl-perl lynx wget 0 packages upgraded, 76 newly installed, 0 to remove and 0 not upgraded. Need to get 33.5 MB of archives. After unpacking 127 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libterm-readkey-perl arm64 2.38-1+b2 [27.3 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libpod-parser-perl all 1.63-2 [96.1 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libpng16-16 arm64 1.6.37-3 [289 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 libfreetype6 arm64 2.10.4+dfsg-1 [393 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 ucf all 3.0043 [74.0 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 fonts-dejavu-core all 2.37-2 [1069 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 libfontconfig1 arm64 2.13.1-4.2 [344 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 libjpeg62-turbo arm64 1:2.0.6-4 [133 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 libdeflate0 arm64 1.7-1 [47.7 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 libjbig0 arm64 2.1-3.1+b2 [27.8 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 libwebp6 arm64 0.6.1-2.1 [244 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libtiff5 arm64 4.2.0-1 [276 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libbsd0 arm64 0.11.3-1 [106 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libxcb1 arm64 1.14-3 [138 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libx11-data all 2:1.7.1-1 [310 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 libx11-6 arm64 2:1.7.1-1 [747 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 libxpm4 arm64 1:3.5.12-1 [43.9 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 libgd3 arm64 2.3.0-2 [127 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 libgfortran5 arm64 10.2.1-6 [333 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libgslcblas0 arm64 2.6+dfsg-2 [73.4 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 libgsl25 arm64 2.6+dfsg-2 [812 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libhdf4-0-alt arm64 4.2.15-3 [250 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 libncurses6 arm64 6.2+20201114-2 [93.2 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 pdl arm64 1:2.025-1 [3221 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 hdf5-helpers arm64 1.10.6+repack-4 [40.4 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 libaec0 arm64 1.0.4-1 [19.8 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libsz2 arm64 1.0.4-1 [6736 B] Get: 65 http://deb.debian.org/debian bullseye/main arm64 libaec-dev arm64 1.0.4-1 [18.2 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 libhdf5-103-1 arm64 1.10.6+repack-4 [1032 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 libhdf5-cpp-103-1 arm64 1.10.6+repack-4 [131 kB] Get: 68 http://deb.debian.org/debian bullseye/main arm64 libhdf5-fortran-102 arm64 1.10.6+repack-4 [103 kB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 libhdf5-hl-100 arm64 1.10.6+repack-4 [78.6 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 libhdf5-hl-fortran-100 arm64 1.10.6+repack-4 [55.0 kB] Get: 71 http://deb.debian.org/debian bullseye/main arm64 libhdf5-hl-cpp-100 arm64 1.10.6+repack-4 [37.6 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Get: 73 http://deb.debian.org/debian bullseye/main arm64 libjpeg62-turbo-dev arm64 1:2.0.6-4 [255 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 libjpeg-dev arm64 1:2.0.6-4 [67.8 kB] Get: 75 http://deb.debian.org/debian bullseye/main arm64 libhdf5-dev arm64 1.10.6+repack-4 [2535 kB] Get: 76 http://deb.debian.org/debian bullseye/main arm64 libperl-dev arm64 5.32.1-4 [992 kB] Fetched 33.5 MB in 1s (52.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... 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Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b2) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up libdeflate0:arm64 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up libperl-dev:arm64 (5.32.1-4) ... Setting up file (1:5.39-3) ... Setting up libjbig0:arm64 (2.1-3.1+b2) ... Setting up libaec0:arm64 (1.0.4-1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libjpeg62-turbo:arm64 (1:2.0.6-4) ... Setting up libx11-data (2:1.7.1-1) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.0.6-4) ... Setting up libncurses6:arm64 (6.2+20201114-2) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up libpng16-16:arm64 (1.6.37-3) ... Setting up libpod-parser-perl (1.63-2) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:arm64 (0.6.1-2.1) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libgfortran5:arm64 (10.2.1-6) ... Setting up libhdf4-0-alt (4.2.15-3) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2) ... Setting up libmd0:arm64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libtiff5:arm64 (4.2.0-1) ... Setting up libterm-readkey-perl (2.38-1+b2) ... Setting up libbsd0:arm64 (0.11.3-1) ... Setting up libelf1:arm64 (0.183-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up libsz2:arm64 (1.0.4-1) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up libxcb1:arm64 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libaec-dev:arm64 (1.0.4-1) ... Setting up libjpeg-dev:arm64 (1:2.0.6-4) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libfreetype6:arm64 (2.10.4+dfsg-1) ... Setting up ucf (3.0043) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up libhdf5-103-1:arm64 (1.10.6+repack-4) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libhdf5-cpp-103-1:arm64 (1.10.6+repack-4) ... Setting up libx11-6:arm64 (2:1.7.1-1) ... Setting up libhdf5-hl-100:arm64 (1.10.6+repack-4) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxpm4:arm64 (1:3.5.12-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libhdf5-hl-cpp-100:arm64 (1.10.6+repack-4) ... Setting up libhdf5-fortran-102:arm64 (1.10.6+repack-4) ... Setting up libhdf5-hl-fortran-100:arm64 (1.10.6+repack-4) ... Setting up libfontconfig1:arm64 (2.13.1-4.2) ... Setting up debhelper (13.3.4) ... Setting up libhdf5-dev (1.10.6+repack-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libgd3:arm64 (2.3.0-2) ... Setting up pdl (1:2.025-1) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). The following additional packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl The following NEW packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 59.5 kB of archives. After this operation, 157 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main arm64 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:2 http://deb.debian.org/debian bullseye/main arm64 libtext-glob-perl all 0.11-1 [8888 B] Get:3 http://deb.debian.org/debian bullseye/main arm64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:4 http://deb.debian.org/debian bullseye/main arm64 usrmerge all 25 [13.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.5 kB in 0s (2792 kB/s) Selecting previously unselected package libnumber-compare-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23040 files and directories currently installed.) Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... Unpacking libnumber-compare-perl (0.03-1.1) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... Unpacking libtext-glob-perl (0.11-1) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... Unpacking libfile-find-rule-perl (0.34-1) ... Selecting previously unselected package usrmerge. Preparing to unpack .../archives/usrmerge_25_all.deb ... Unpacking usrmerge (25) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libnumber-compare-perl (0.03-1.1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up usrmerge (25) ... The system has been successfully converted. Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. I: Building the package hostname: Temporary failure in name resolution I: Running cd /build/libpdl-io-hdf5-perl-0.73/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libpdl-io-hdf5-perl_0.73-6_source.changes dpkg-buildpackage: info: source package libpdl-io-hdf5-perl dpkg-buildpackage: info: source version 1:0.73-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Bas Couwenberg dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -fdebug-prefix-map=/build/libpdl-io-hdf5-perl-0.73=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/build/libpdl-io-hdf5-perl-0.73=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now" testing /lib/libhdf5.so testing /lib/libhdf5_serial.so testing /lib/libhdf5.dll.a testing /lib/libhdf5.a testing /lib64/libhdf5.so testing /lib64/libhdf5_serial.so testing /lib64/libhdf5.dll.a testing /lib64/libhdf5.a testing /usr/lib/aarch64-linux-gnu/libhdf5.so testing /usr/lib/aarch64-linux-gnu/libhdf5_serial.so Found libhdf5_serial.so at /usr/lib/aarch64-linux-gnu/libhdf5_serial.so Found hdf5.h at /usr/include/hdf5/serial/hdf5.h Defining bool=int (linux seems to need this) Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for PDL::IO::HDF5 Writing MYMETA.yml and MYMETA.json dh_auto_build make -j8 make[1]: Entering directory '/build/libpdl-io-hdf5-perl-0.73' "/usr/bin/perl" "-I/usr/lib/aarch64-linux-gnu/perl5/5.32" "-MPDL::PP qw[PDL::IO::HDF5 PDL::IO::HDF5 HDF5]" hdf5.pd Running Mkbootstrap for HDF5 () chmod 644 "HDF5.bs" "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- HDF5.bs blib/arch/auto/PDL/IO/HDF5/HDF5.bs 644 touch HDF5.xs "/usr/bin/perl" "/usr/share/perl/5.32/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.32/ExtUtils/typemap' -typemap '/usr/lib/aarch64-linux-gnu/perl5/5.32/PDL/Core/typemap.pdl' -typemap '/build/libpdl-io-hdf5-perl-0.73/typemap' HDF5.xs > HDF5.xsc cp HDF5/Group.pm blib/lib/PDL/IO/HDF5/Group.pm cp HDF5.pm blib/lib/PDL/IO/HDF5.pm cp HDF5/Dataset.pm blib/lib/PDL/IO/HDF5/Dataset.pm cp HDF5/tkview.pm blib/lib/PDL/IO/HDF5/tkview.pm mv HDF5.xsc HDF5.c aarch64-linux-gnu-gcc -c "-I/usr/lib/aarch64-linux-gnu/perl5/5.32/PDL/Core" -I/usr/include/hdf5/serial -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Dbool=int -DH5_USE_16_API -g -g -O2 -fdebug-prefix-map=/build/libpdl-io-hdf5-perl-0.73=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.73\" -DXS_VERSION=\"0.73\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.32/CORE" HDF5.c rm -f blib/arch/auto/PDL/IO/HDF5/HDF5.so aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/build/libpdl-io-hdf5-perl-0.73=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong HDF5.o -o blib/arch/auto/PDL/IO/HDF5/HDF5.so \ -L/usr/lib/aarch64-linux-gnu -lhdf5_serial -lm \ chmod 755 blib/arch/auto/PDL/IO/HDF5/HDF5.so Manifying 4 pod documents make[1]: Leaving directory '/build/libpdl-io-hdf5-perl-0.73' dh_auto_test make -j8 test TEST_VERBOSE=1 make[1]: Entering directory '/build/libpdl-io-hdf5-perl-0.73' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- HDF5.bs blib/arch/auto/PDL/IO/HDF5/HDF5.bs 644 PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/attribPDL.t ..... 1..13 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok t/file.t .......... 1..3 ok 1 ok 2 ok 3 ok t/group.t ......... 1..17 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok t/reference.t ..... 1..2 ok 1 ok 2 ok t/total.t ......... 1..33 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok HDF5-DIAG: Error detected in HDF5 (1.10.6) thread 281473091778560: #000: ../../../src/H5Ddeprec.c line 257 in H5Dextend(): unable to extend dataset major: Dataset minor: Unable to initialize object #001: ../../../src/H5Dint.c line 2784 in H5D__set_extent(): dataset has contiguous storage major: Invalid arguments to routine minor: Out of range Error extending dataset in PDL::IO::HDF5::Dataset:set at t/unlink.t line 22. t/unlink.t ........ 1..2 ok 1 ok 2 ok t/vlenString.t .... 1..6 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok # xdata '[2 3 4 5 6 7 8 9 10 11 12]' # xdata '[2 3 4 5 6 7 8 9 10 11 12 13 14]' t/xData.t ......... 1..2 ok 1 ok 2 ok t/ztotal_index.t .. 1..7 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok All tests successful. Files=9, Tests=85, 5 wallclock secs ( 0.09 usr 0.03 sys + 4.63 cusr 0.44 csys = 5.19 CPU) Result: PASS make[1]: Leaving directory '/build/libpdl-io-hdf5-perl-0.73' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j8 install DESTDIR=/build/libpdl-io-hdf5-perl-0.73/debian/libpdl-io-hdf5-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/libpdl-io-hdf5-perl-0.73' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- HDF5.bs blib/arch/auto/PDL/IO/HDF5/HDF5.bs 644 Manifying 4 pod documents Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/libpdl-io-hdf5-perl-0.73/debian/libpdl-io-hdf5-perl/usr/lib/aarch64-linux-gnu/perl5/5.32/auto/PDL/IO/HDF5/HDF5.so Installing /build/libpdl-io-hdf5-perl-0.73/debian/libpdl-io-hdf5-perl/usr/lib/aarch64-linux-gnu/perl5/5.32/PDL/IO/HDF5.pm Installing /build/libpdl-io-hdf5-perl-0.73/debian/libpdl-io-hdf5-perl/usr/lib/aarch64-linux-gnu/perl5/5.32/PDL/IO/HDF5/tkview.pm Installing /build/libpdl-io-hdf5-perl-0.73/debian/libpdl-io-hdf5-perl/usr/lib/aarch64-linux-gnu/perl5/5.32/PDL/IO/HDF5/Dataset.pm Installing /build/libpdl-io-hdf5-perl-0.73/debian/libpdl-io-hdf5-perl/usr/lib/aarch64-linux-gnu/perl5/5.32/PDL/IO/HDF5/Group.pm Installing /build/libpdl-io-hdf5-perl-0.73/debian/libpdl-io-hdf5-perl/usr/share/man/man3/PDL::IO::HDF5::tkview.3pm Installing /build/libpdl-io-hdf5-perl-0.73/debian/libpdl-io-hdf5-perl/usr/share/man/man3/PDL::IO::HDF5::Group.3pm Installing /build/libpdl-io-hdf5-perl-0.73/debian/libpdl-io-hdf5-perl/usr/share/man/man3/PDL::IO::HDF5::Dataset.3pm Installing /build/libpdl-io-hdf5-perl-0.73/debian/libpdl-io-hdf5-perl/usr/share/man/man3/PDL::IO::HDF5.3pm Updating PDL documentation database... "/usr/bin/perl" -e 'exit if $ENV{DESTDIR}; use PDL::Doc; eval { PDL::Doc::add_module(q{PDL::IO::HDF5}); }' -- make[1]: Leaving directory '/build/libpdl-io-hdf5-perl-0.73' dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/libpdl-io-hdf5-perl-0.73' dh_installchangelogs -k Release_Notes make[1]: Leaving directory '/build/libpdl-io-hdf5-perl-0.73' dh_installman dh_lintian debian/rules override_dh_perl make[1]: Entering directory '/build/libpdl-io-hdf5-perl-0.73' dh_perl dh_pdl make[1]: Leaving directory '/build/libpdl-io-hdf5-perl-0.73' dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libpdl-io-hdf5-perl-dbgsym' in '../libpdl-io-hdf5-perl-dbgsym_0.73-6_arm64.deb'. dpkg-deb: building package 'libpdl-io-hdf5-perl' in '../libpdl-io-hdf5-perl_0.73-6_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libpdl-io-hdf5-perl_0.73-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/12529/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/12529/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/12529 and its subdirectories I: Current time: Wed Aug 10 19:13:08 +14 2022 I: pbuilder-time-stamp: 1660108388