I: pbuilder: network access will be disabled during build I: Current time: Tue Jul 20 10:58:21 +14 2021 I: pbuilder-time-stamp: 1626728301 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libpdb-redo_1.0.2-2.dsc] I: copying [./libpdb-redo_1.0.2.orig.tar.gz] I: copying [./libpdb-redo_1.0.2-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.8bsUdBaK/trustedkeys.kbx': General error gpgv: Signature made Thu Jan 7 00:54:36 2021 +14 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libpdb-redo_1.0.2-2.dsc dpkg-source: info: extracting libpdb-redo in libpdb-redo-1.0.2 dpkg-source: info: unpacking libpdb-redo_1.0.2.orig.tar.gz dpkg-source: info: unpacking libpdb-redo_1.0.2-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no-data-update.patch dpkg-source: info: applying unit-test.patch dpkg-source: info: applying configure.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/10636/tmp/hooks/D01_modify_environment starting debug: Running on codethink16-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/10636/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/10636/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/var/lib/jenkins HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=10636 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.GgHyBMlsbV/pbuilderrc_laq9 --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.GgHyBMlsbV/b2 --logfile b2/build.log --extrapackages usrmerge libpdb-redo_1.0.2-2.dsc' SUDO_GID=117 SUDO_UID=110 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root USERNAME=root _='I: set' http_proxy=http://192.168.101.16:3128 I: uname -a Linux i-capture-the-hostname 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:18:37 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 22 16:26 bash -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash -rwxr-xr-x 1 root root 101384 Sep 23 2020 date -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd -rwxr-xr-x 1 root root 89824 Sep 23 2020 df -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir -rwxr-xr-x 1 root root 76152 Feb 8 04:38 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 8 04:38 findmnt -rwsr-xr-x 1 root root 34824 Feb 27 06:12 fusermount -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe -rwxr-xr-x 1 root root 93744 Mar 3 13:30 gzip -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln -rwxr-xr-x 1 root root 52720 Feb 8 2020 login -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls -rwxr-xr-x 1 root root 161960 Feb 8 04:38 lsblk -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 8 04:38 more -rwsr-xr-x 1 root root 51360 Feb 8 04:38 mount -rwxr-xr-x 1 root root 14496 Feb 8 04:38 mountpoint -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Jul 20 10:58 sh -> bash lrwxrwxrwx 1 root root 4 Jul 18 23:24 sh.distrib -> dash -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty -rwsr-xr-x 1 root root 67776 Feb 8 04:38 su -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync -rwxr-xr-x 1 root root 535768 Feb 17 23:55 tar -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch -rwxr-xr-x 1 root root 31512 Sep 23 2020 true -rwxr-xr-x 1 root root 14264 Feb 27 06:12 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 8 04:38 umount -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 8 04:38 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew I: user script /srv/workspace/pbuilder/10636/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libcifpp-dev (>= 1.0.1), autoconf-archive, libnewuoa-dev, pkg-config, libgsl-dev, libboost-dev, libboost-iostreams-dev, libzeep-dev (>= 5.0.2), libclipper-dev, libccp4-dev (>= 6.5.1-5) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libcifpp-dev (>= 1.0.1); however: Package libcifpp-dev is not installed. pbuilder-satisfydepends-dummy depends on autoconf-archive; however: Package autoconf-archive is not installed. pbuilder-satisfydepends-dummy depends on libnewuoa-dev; however: Package libnewuoa-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libzeep-dev (>= 5.0.2); however: Package libzeep-dev is not installed. pbuilder-satisfydepends-dummy depends on libclipper-dev; however: Package libclipper-dev is not installed. pbuilder-satisfydepends-dummy depends on libccp4-dev (>= 6.5.1-5); however: Package libccp4-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} autoconf-archive{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} fftw-dev{a} fftw2{a} file{a} gettext{a} gettext-base{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libboost-date-time-dev{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-dev{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-system-dev{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost1.74-dev{a} libbsd0{a} libccp4-data{a} libccp4-dev{a} libccp4c0{a} libccp4f0{a} libcifpp-dev{a} libcifpp1{a} libclipper-dev{a} libclipper2{a} libdebhelper-perl{a} libelf1{a} libevent-core-2.1-7{a} libevent-pthreads-2.1-7{a} libfabric1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libgsl-dev{a} libgsl25{a} libgslcblas0{a} libhwloc-plugins{a} libhwloc15{a} libibverbs1{a} libicu-dev{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmmdb2-0{a} libmmdb2-dev{a} libnewuoa-dev{a} libnewuoa0{a} libnl-3-200{a} libnl-route-3-200{a} libnuma1{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix2{a} librdmacm1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libucx0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} libzeep-dev{a} libzeep5{a} m4{a} man-db{a} ocl-icd-libopencl1{a} pkg-config{a} po-debconf{a} sensible-utils{a} sfftw-dev{a} sfftw2{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 100 newly installed, 0 to remove and 0 not upgraded. Need to get 57.2 MB of archives. After unpacking 357 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 autoconf-archive all 20190106-2.1 [746 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 libevent-core-2.1-7 arm64 2.1.12-stable-1 [132 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libevent-pthreads-2.1-7 arm64 2.1.12-stable-1 [57.2 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 libnl-3-200 arm64 3.4.0-1+b1 [60.6 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libnl-route-3-200 arm64 3.4.0-1+b1 [149 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 libibverbs1 arm64 33.2-1 [56.1 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 ibverbs-providers arm64 33.2-1 [235 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 librdmacm1 arm64 33.2-1 [65.3 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 libfabric1 arm64 1.11.0-2 [389 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libhwloc15 arm64 2.4.1+dfsg-1 [131 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 libpciaccess0 arm64 0.16-1 [52.9 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 libbsd0 arm64 0.11.3-1 [106 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 libxcb1 arm64 1.14-3 [138 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 libx11-data all 2:1.7.1-1 [310 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 libx11-6 arm64 2:1.7.1-1 [747 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 libxext6 arm64 2:1.3.3-1.1 [51.6 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libxnvctrl0 arm64 460.73.01-1 [26.7 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 ocl-icd-libopencl1 arm64 2.2.14-2 [41.5 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libhwloc-plugins arm64 2.4.1+dfsg-1 [21.1 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libpmix2 arm64 4.0.0-4 [513 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libnuma1 arm64 2.0.12-1+b1 [25.8 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libucx0 arm64 1.10.1~rc1+really.1.10.0-1 [567 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libopenmpi3 arm64 4.1.0-10 [2152 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 fftw2 arm64 2.1.5-4.2+b1 [208 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 fftw-dev arm64 2.1.5-4.2+b1 [234 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 icu-devtools arm64 67.1-7 [189 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 libboost1.74-dev arm64 1.74.0-9 [9534 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 libboost-date-time1.74.0 arm64 1.74.0-9 [241 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 libboost-serialization1.74.0 arm64 1.74.0-9 [331 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libboost-serialization1.74-dev arm64 1.74.0-9 [381 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 libboost-date-time1.74-dev arm64 1.74.0-9 [250 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 libboost-date-time-dev arm64 1.74.0.3 [4332 B] Get: 67 http://deb.debian.org/debian bullseye/main arm64 libboost-dev arm64 1.74.0.3 [4548 B] Get: 68 http://deb.debian.org/debian bullseye/main arm64 libboost-regex1.74.0 arm64 1.74.0-9 [473 kB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 libicu-dev arm64 67.1-7 [9468 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 libboost-regex1.74-dev arm64 1.74.0-9 [549 kB] Get: 71 http://deb.debian.org/debian bullseye/main arm64 libboost-iostreams1.74-dev arm64 1.74.0-9 [272 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 libboost-iostreams-dev arm64 1.74.0.3 [4316 B] Get: 73 http://deb.debian.org/debian bullseye/main arm64 libboost-program-options1.74.0 arm64 1.74.0-9 [344 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 libboost-program-options1.74-dev arm64 1.74.0-9 [382 kB] Get: 75 http://deb.debian.org/debian bullseye/main arm64 libboost-program-options-dev arm64 1.74.0.3 [4340 B] Get: 76 http://deb.debian.org/debian bullseye/main arm64 libboost-system1.74.0 arm64 1.74.0-9 [242 kB] Get: 77 http://deb.debian.org/debian bullseye/main arm64 libboost-system1.74-dev arm64 1.74.0-9 [243 kB] Get: 78 http://deb.debian.org/debian bullseye/main arm64 libboost-system-dev arm64 1.74.0.3 [4468 B] Get: 79 http://deb.debian.org/debian bullseye/main arm64 libccp4-data all 6.5.1-5 [61.6 kB] Get: 80 http://deb.debian.org/debian bullseye/main arm64 libccp4c0 arm64 6.5.1-5 [81.6 kB] Get: 81 http://deb.debian.org/debian bullseye/main arm64 libgfortran5 arm64 10.2.1-6 [333 kB] Get: 82 http://deb.debian.org/debian bullseye/main arm64 libmmdb2-0 arm64 2.0.5-1 [315 kB] Get: 83 http://deb.debian.org/debian bullseye/main arm64 libccp4f0 arm64 6.5.1-5 [212 kB] Get: 84 http://deb.debian.org/debian bullseye/main arm64 libccp4-dev arm64 6.5.1-5 [42.8 kB] Get: 85 http://deb.debian.org/debian bullseye/main arm64 libcifpp1 arm64 1.0.1-3 [1352 kB] Get: 86 http://deb.debian.org/debian bullseye/main arm64 libcifpp-dev arm64 1.0.1-3 [65.1 kB] Get: 87 http://deb.debian.org/debian bullseye/main arm64 sfftw2 arm64 2.1.5-4.2+b1 [207 kB] Get: 88 http://deb.debian.org/debian bullseye/main arm64 libclipper2 arm64 2.1.20201109-1 [1088 kB] Get: 89 http://deb.debian.org/debian bullseye/main arm64 libmmdb2-dev arm64 2.0.5-1 [91.9 kB] Get: 90 http://deb.debian.org/debian bullseye/main arm64 sfftw-dev arm64 2.1.5-4.2+b1 [235 kB] Get: 91 http://deb.debian.org/debian bullseye/main arm64 libclipper-dev arm64 2.1.20201109-1 [82.6 kB] Get: 92 http://deb.debian.org/debian bullseye/main arm64 libglib2.0-0 arm64 2.66.8-1 [1286 kB] Get: 93 http://deb.debian.org/debian bullseye/main arm64 libgslcblas0 arm64 2.6+dfsg-2 [73.4 kB] Get: 94 http://deb.debian.org/debian bullseye/main arm64 libgsl25 arm64 2.6+dfsg-2 [812 kB] Get: 95 http://deb.debian.org/debian bullseye/main arm64 libgsl-dev arm64 2.6+dfsg-2 [1006 kB] Get: 96 http://deb.debian.org/debian bullseye/main arm64 libnewuoa0 arm64 0.1.1-2 [15.5 kB] Get: 97 http://deb.debian.org/debian bullseye/main arm64 libnewuoa-dev arm64 0.1.1-2 [4916 B] Get: 98 http://deb.debian.org/debian bullseye/main arm64 libzeep5 arm64 5.0.2-3 [595 kB] Get: 99 http://deb.debian.org/debian bullseye/main arm64 pkg-config arm64 0.29.2-1 [63.6 kB] Get: 100 http://deb.debian.org/debian bullseye/main arm64 libzeep-dev arm64 5.0.2-3 [1059 kB] Fetched 57.2 MB in 1s (59.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package autoconf-archive. Preparing to unpack .../05-autoconf-archive_20190106-2.1_all.deb ... Unpacking autoconf-archive (20190106-2.1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../08-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../11-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../21-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.11.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.11.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.11.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.11.0-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../24-libelf1_0.183-1_arm64.deb ... Unpacking libelf1:arm64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.13+20210201-1_arm64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../26-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../27-libxml2_2.9.10+dfsg-6.7_arm64.deb ... Unpacking libxml2:arm64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.21-4_arm64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package libevent-core-2.1-7:arm64. Preparing to unpack .../32-libevent-core-2.1-7_2.1.12-stable-1_arm64.deb ... Unpacking libevent-core-2.1-7:arm64 (2.1.12-stable-1) ... Selecting previously unselected package libevent-pthreads-2.1-7:arm64. Preparing to unpack .../33-libevent-pthreads-2.1-7_2.1.12-stable-1_arm64.deb ... Unpacking libevent-pthreads-2.1-7:arm64 (2.1.12-stable-1) ... Selecting previously unselected package libnl-3-200:arm64. Preparing to unpack .../34-libnl-3-200_3.4.0-1+b1_arm64.deb ... Unpacking libnl-3-200:arm64 (3.4.0-1+b1) ... Selecting previously unselected package libnl-route-3-200:arm64. Preparing to unpack .../35-libnl-route-3-200_3.4.0-1+b1_arm64.deb ... Unpacking libnl-route-3-200:arm64 (3.4.0-1+b1) ... Selecting previously unselected package libibverbs1:arm64. Preparing to unpack .../36-libibverbs1_33.2-1_arm64.deb ... Unpacking libibverbs1:arm64 (33.2-1) ... Selecting previously unselected package ibverbs-providers:arm64. Preparing to unpack .../37-ibverbs-providers_33.2-1_arm64.deb ... Unpacking ibverbs-providers:arm64 (33.2-1) ... Selecting previously unselected package librdmacm1:arm64. Preparing to unpack .../38-librdmacm1_33.2-1_arm64.deb ... Unpacking librdmacm1:arm64 (33.2-1) ... Selecting previously unselected package libfabric1. Preparing to unpack .../39-libfabric1_1.11.0-2_arm64.deb ... Unpacking libfabric1 (1.11.0-2) ... Selecting previously unselected package libhwloc15:arm64. Preparing to unpack .../40-libhwloc15_2.4.1+dfsg-1_arm64.deb ... Unpacking libhwloc15:arm64 (2.4.1+dfsg-1) ... Selecting previously unselected package libpciaccess0:arm64. Preparing to unpack .../41-libpciaccess0_0.16-1_arm64.deb ... Unpacking libpciaccess0:arm64 (0.16-1) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../42-libxau6_1%3a1.0.9-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.9-1) ... Selecting previously unselected package libmd0:arm64. Preparing to unpack .../43-libmd0_1.0.3-3_arm64.deb ... Unpacking libmd0:arm64 (1.0.3-3) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../44-libbsd0_0.11.3-1_arm64.deb ... Unpacking libbsd0:arm64 (0.11.3-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../45-libxdmcp6_1%3a1.1.2-3_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../46-libxcb1_1.14-3_arm64.deb ... Unpacking libxcb1:arm64 (1.14-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../47-libx11-data_2%3a1.7.1-1_all.deb ... Unpacking libx11-data (2:1.7.1-1) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../48-libx11-6_2%3a1.7.1-1_arm64.deb ... Unpacking libx11-6:arm64 (2:1.7.1-1) ... Selecting previously unselected package libxext6:arm64. Preparing to unpack .../49-libxext6_2%3a1.3.3-1.1_arm64.deb ... Unpacking libxext6:arm64 (2:1.3.3-1.1) ... Selecting previously unselected package libxnvctrl0:arm64. Preparing to unpack .../50-libxnvctrl0_460.73.01-1_arm64.deb ... Unpacking libxnvctrl0:arm64 (460.73.01-1) ... Selecting previously unselected package ocl-icd-libopencl1:arm64. Preparing to unpack .../51-ocl-icd-libopencl1_2.2.14-2_arm64.deb ... Unpacking ocl-icd-libopencl1:arm64 (2.2.14-2) ... Selecting previously unselected package libhwloc-plugins:arm64. Preparing to unpack .../52-libhwloc-plugins_2.4.1+dfsg-1_arm64.deb ... Unpacking libhwloc-plugins:arm64 (2.4.1+dfsg-1) ... Selecting previously unselected package libpmix2:arm64. Preparing to unpack .../53-libpmix2_4.0.0-4_arm64.deb ... Unpacking libpmix2:arm64 (4.0.0-4) ... Selecting previously unselected package libnuma1:arm64. Preparing to unpack .../54-libnuma1_2.0.12-1+b1_arm64.deb ... Unpacking libnuma1:arm64 (2.0.12-1+b1) ... Selecting previously unselected package libucx0:arm64. Preparing to unpack .../55-libucx0_1.10.1~rc1+really.1.10.0-1_arm64.deb ... Unpacking libucx0:arm64 (1.10.1~rc1+really.1.10.0-1) ... Selecting previously unselected package libopenmpi3:arm64. Preparing to unpack .../56-libopenmpi3_4.1.0-10_arm64.deb ... Unpacking libopenmpi3:arm64 (4.1.0-10) ... Selecting previously unselected package fftw2. Preparing to unpack .../57-fftw2_2.1.5-4.2+b1_arm64.deb ... Unpacking fftw2 (2.1.5-4.2+b1) ... Selecting previously unselected package fftw-dev. Preparing to unpack .../58-fftw-dev_2.1.5-4.2+b1_arm64.deb ... Unpacking fftw-dev (2.1.5-4.2+b1) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../59-icu-devtools_67.1-7_arm64.deb ... Unpacking icu-devtools (67.1-7) ... Selecting previously unselected package libboost1.74-dev:arm64. Preparing to unpack .../60-libboost1.74-dev_1.74.0-9_arm64.deb ... Unpacking libboost1.74-dev:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-date-time1.74.0:arm64. Preparing to unpack .../61-libboost-date-time1.74.0_1.74.0-9_arm64.deb ... Unpacking libboost-date-time1.74.0:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-serialization1.74.0:arm64. Preparing to unpack .../62-libboost-serialization1.74.0_1.74.0-9_arm64.deb ... Unpacking libboost-serialization1.74.0:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-serialization1.74-dev:arm64. Preparing to unpack .../63-libboost-serialization1.74-dev_1.74.0-9_arm64.deb ... Unpacking libboost-serialization1.74-dev:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-date-time1.74-dev:arm64. Preparing to unpack .../64-libboost-date-time1.74-dev_1.74.0-9_arm64.deb ... Unpacking libboost-date-time1.74-dev:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-date-time-dev:arm64. Preparing to unpack .../65-libboost-date-time-dev_1.74.0.3_arm64.deb ... Unpacking libboost-date-time-dev:arm64 (1.74.0.3) ... Selecting previously unselected package libboost-dev:arm64. Preparing to unpack .../66-libboost-dev_1.74.0.3_arm64.deb ... Unpacking libboost-dev:arm64 (1.74.0.3) ... Selecting previously unselected package libboost-regex1.74.0:arm64. Preparing to unpack .../67-libboost-regex1.74.0_1.74.0-9_arm64.deb ... Unpacking libboost-regex1.74.0:arm64 (1.74.0-9) ... Selecting previously unselected package libicu-dev:arm64. Preparing to unpack .../68-libicu-dev_67.1-7_arm64.deb ... Unpacking libicu-dev:arm64 (67.1-7) ... Selecting previously unselected package libboost-regex1.74-dev:arm64. Preparing to unpack .../69-libboost-regex1.74-dev_1.74.0-9_arm64.deb ... Unpacking libboost-regex1.74-dev:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-iostreams1.74-dev:arm64. Preparing to unpack .../70-libboost-iostreams1.74-dev_1.74.0-9_arm64.deb ... Unpacking libboost-iostreams1.74-dev:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-iostreams-dev:arm64. Preparing to unpack .../71-libboost-iostreams-dev_1.74.0.3_arm64.deb ... Unpacking libboost-iostreams-dev:arm64 (1.74.0.3) ... Selecting previously unselected package libboost-program-options1.74.0:arm64. Preparing to unpack .../72-libboost-program-options1.74.0_1.74.0-9_arm64.deb ... Unpacking libboost-program-options1.74.0:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-program-options1.74-dev:arm64. Preparing to unpack .../73-libboost-program-options1.74-dev_1.74.0-9_arm64.deb ... Unpacking libboost-program-options1.74-dev:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-program-options-dev:arm64. Preparing to unpack .../74-libboost-program-options-dev_1.74.0.3_arm64.deb ... Unpacking libboost-program-options-dev:arm64 (1.74.0.3) ... Selecting previously unselected package libboost-system1.74.0:arm64. Preparing to unpack .../75-libboost-system1.74.0_1.74.0-9_arm64.deb ... Unpacking libboost-system1.74.0:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-system1.74-dev:arm64. Preparing to unpack .../76-libboost-system1.74-dev_1.74.0-9_arm64.deb ... Unpacking libboost-system1.74-dev:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-system-dev:arm64. Preparing to unpack .../77-libboost-system-dev_1.74.0.3_arm64.deb ... Unpacking libboost-system-dev:arm64 (1.74.0.3) ... Selecting previously unselected package libccp4-data. Preparing to unpack .../78-libccp4-data_6.5.1-5_all.deb ... Unpacking libccp4-data (6.5.1-5) ... Selecting previously unselected package libccp4c0:arm64. Preparing to unpack .../79-libccp4c0_6.5.1-5_arm64.deb ... Unpacking libccp4c0:arm64 (6.5.1-5) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../80-libgfortran5_10.2.1-6_arm64.deb ... Unpacking libgfortran5:arm64 (10.2.1-6) ... Selecting previously unselected package libmmdb2-0:arm64. Preparing to unpack .../81-libmmdb2-0_2.0.5-1_arm64.deb ... Unpacking libmmdb2-0:arm64 (2.0.5-1) ... Selecting previously unselected package libccp4f0:arm64. Preparing to unpack .../82-libccp4f0_6.5.1-5_arm64.deb ... Unpacking libccp4f0:arm64 (6.5.1-5) ... Selecting previously unselected package libccp4-dev:arm64. Preparing to unpack .../83-libccp4-dev_6.5.1-5_arm64.deb ... Unpacking libccp4-dev:arm64 (6.5.1-5) ... Selecting previously unselected package libcifpp1. Preparing to unpack .../84-libcifpp1_1.0.1-3_arm64.deb ... Unpacking libcifpp1 (1.0.1-3) ... Selecting previously unselected package libcifpp-dev. Preparing to unpack .../85-libcifpp-dev_1.0.1-3_arm64.deb ... Unpacking libcifpp-dev (1.0.1-3) ... Selecting previously unselected package sfftw2. Preparing to unpack .../86-sfftw2_2.1.5-4.2+b1_arm64.deb ... Unpacking sfftw2 (2.1.5-4.2+b1) ... Selecting previously unselected package libclipper2:arm64. Preparing to unpack .../87-libclipper2_2.1.20201109-1_arm64.deb ... Unpacking libclipper2:arm64 (2.1.20201109-1) ... Selecting previously unselected package libmmdb2-dev. Preparing to unpack .../88-libmmdb2-dev_2.0.5-1_arm64.deb ... Unpacking libmmdb2-dev (2.0.5-1) ... Selecting previously unselected package sfftw-dev. Preparing to unpack .../89-sfftw-dev_2.1.5-4.2+b1_arm64.deb ... 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Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libgslcblas0:arm64 (2.6+dfsg-2) ... Setting up libmmdb2-0:arm64 (2.0.5-1) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libgsl25:arm64 (2.6+dfsg-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:arm64 (2.66.8-1) ... No schema files found: doing nothing. Setting up libboost-program-options1.74.0:arm64 (1.74.0-9) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up autoconf-archive (20190106-2.1) ... Setting up file (1:5.39-3) ... Setting up libccp4-data (6.5.1-5) ... Setting up libnewuoa0 (0.1.1-2) ... Setting up libboost-program-options1.74-dev:arm64 (1.74.0-9) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libboost-program-options-dev:arm64 (1.74.0.3) ... 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Setting up libcifpp-dev (1.0.1-3) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up libboost-regex1.74-dev:arm64 (1.74.0-9) ... Setting up groff-base (1.22.4-6) ... Setting up libx11-6:arm64 (2:1.7.1-1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libibverbs1:arm64 (33.2-1) ... Setting up ibverbs-providers:arm64 (33.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:arm64 (2:1.3.3-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxnvctrl0:arm64 (460.73.01-1) ... Setting up libboost-iostreams1.74-dev:arm64 (1.74.0-9) ... Setting up dh-autoreconf (20) ... Setting up libboost-date-time1.74-dev:arm64 (1.74.0-9) ... Setting up libboost-date-time-dev:arm64 (1.74.0.3) ... Setting up librdmacm1:arm64 (33.2-1) ... Setting up libucx0:arm64 (1.10.1~rc1+really.1.10.0-1) ... Setting up debhelper (13.3.4) ... Setting up libboost-iostreams-dev:arm64 (1.74.0.3) ... Setting up libhwloc-plugins:arm64 (2.4.1+dfsg-1) ... Setting up libzeep-dev (5.0.2-3) ... Setting up libfabric1 (1.11.0-2) ... Setting up libpmix2:arm64 (4.0.0-4) ... Setting up libopenmpi3:arm64 (4.1.0-10) ... Setting up sfftw2 (2.1.5-4.2+b1) ... Setting up fftw2 (2.1.5-4.2+b1) ... Setting up sfftw-dev (2.1.5-4.2+b1) ... Setting up libclipper2:arm64 (2.1.20201109-1) ... Setting up fftw-dev (2.1.5-4.2+b1) ... Setting up libclipper-dev:arm64 (2.1.20201109-1) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl The following NEW packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 59.5 kB of archives. After this operation, 157 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main arm64 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:2 http://deb.debian.org/debian bullseye/main arm64 libtext-glob-perl all 0.11-1 [8888 B] Get:3 http://deb.debian.org/debian bullseye/main arm64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:4 http://deb.debian.org/debian bullseye/main arm64 usrmerge all 25 [13.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.5 kB in 2s (23.9 kB/s) Selecting previously unselected package libnumber-compare-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 40080 files and directories currently installed.) Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... Unpacking libnumber-compare-perl (0.03-1.1) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... Unpacking libtext-glob-perl (0.11-1) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... Unpacking libfile-find-rule-perl (0.34-1) ... Selecting previously unselected package usrmerge. Preparing to unpack .../archives/usrmerge_25_all.deb ... Unpacking usrmerge (25) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libnumber-compare-perl (0.03-1.1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up usrmerge (25) ... The system has been successfully converted. Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. I: Building the package hostname: Temporary failure in name resolution I: Running cd /build/libpdb-redo-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libpdb-redo_1.0.2-2_source.changes dpkg-buildpackage: info: source package libpdb-redo dpkg-buildpackage: info: source version 1.0.2-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Maarten L. Hekkelman dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. debian/rules override_dh_auto_configure make[1]: Map '/build/libpdb-redo-1.0.2' wordt binnengegaan dh_auto_configure -- --enable-shared --disable-static ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-shared --disable-static checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether g++ supports C++17 features with -std=c++17... yes checking for a BSD-compatible install... /usr/bin/install -c checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -std=c++17 -E checking for ld used by g++ -std=c++17... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ -std=c++17 linker (/usr/bin/ld) supports shared libraries... yes checking for g++ -std=c++17 option to produce PIC... -fPIC -DPIC checking if g++ -std=c++17 PIC flag -fPIC -DPIC works... yes checking if g++ -std=c++17 static flag -static works... yes checking if g++ -std=c++17 supports -c -o file.o... yes checking if g++ -std=c++17 supports -c -o file.o... (cached) yes checking whether the g++ -std=c++17 linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether C++ compiler accepts -fstandalone-debug... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for mrc... USE_RSRC=1 checking for sin in -lm... yes checking for gsl ... yes checking whether gcc is Clang... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking for boostlib >= 1.71 (107100)... yes checking whether the Boost::IOStreams library is available... yes checking for exit in -lboost_iostreams... yes checking filesystem usability... yes checking filesystem presence... yes checking for filesystem... yes checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking for libcifpp ... yes checking for libzeep ... yes checking for clipper ... yes checking clipper version... ok checking dlib/global_optimization.h usability... no checking dlib/global_optimization.h presence... no checking for dlib/global_optimization.h... no configure: WARNING: libdlib-dev not found checking for newuoa ... yes configure: creating ./config.status config.status: creating GNUmakefile config.status: creating libpdb-redo.pc config.status: creating src/config.hpp config.status: executing libtool commands make[1]: Map '/build/libpdb-redo-1.0.2' wordt verlaten dh_auto_build make -j8 make[1]: Map '/build/libpdb-redo-1.0.2' wordt binnengegaan mkdir -p obj >> src/AtomShape.cpp >> src/BondMap.cpp >> src/ClipperWrapper.cpp >> src/DistanceMap.cpp >> src/MapMaker.cpp >> src/Minimizer.cpp >> src/Ramachandran.cpp >> src/ResolutionCalculator.cpp >> src/Restraints.cpp >> src/SkipList.cpp >> src/Statistics.cpp >> src/Symmetry-2.cpp src/MapMaker.cpp: In member function ‘void mmcif::MapMaker::fixMTZ() [with FTYPE = float]’: src/MapMaker.cpp:1033:8: note: parameter passing for argument of type ‘clipper::datatypes::F_phi’ when C++17 is enabled changed to match C++14 in GCC 10.1 1033 | auto mFo = mFbData[ih] - mFdData[ih]; | ^~~ In file included from /usr/include/c++/10/bits/stl_algobase.h:64, from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/ios:40, from /usr/include/c++/10/istream:38, from /usr/include/c++/10/fstream:38, from src/Statistics.cpp:29: /usr/include/c++/10/bits/stl_pair.h: In instantiation of ‘constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename std::__strip_reference_wrapper::type>::__type = double; typename std::__strip_reference_wrapper::type>::__type = double]’: src/Statistics.cpp:610:80: required from here /usr/include/c++/10/bits/stl_pair.h:567:5: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 567 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ /bin/sh /build/libpdb-redo-1.0.2/libtool --silent --tag=CXX --mode=link g++ -std=c++17 -g -O2 -fdebug-prefix-map=/build/libpdb-redo-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wall -Wno-multichar -I include -O2 -DDATADIR='"/usr/share/libpdb-redo"' -DNDEBUG -Wl,-z,relro -Wl,-z,now -pthread -version-info 1:0:0 -o libpdb-redo.la -rpath /usr/lib/aarch64-linux-gnu obj/AtomShape.lo obj/BondMap.lo obj/ClipperWrapper.lo obj/DistanceMap.lo obj/MapMaker.lo obj/Minimizer.lo obj/Ramachandran.lo obj/ResolutionCalculator.lo obj/Restraints.lo obj/SkipList.lo obj/Statistics.lo obj/Symmetry-2.lo -lcifpp -lzeep -lgsl -lgslcblas -lm -lnewuoa -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lboost_iostreams -lm make[1]: Map '/build/libpdb-redo-1.0.2' wordt verlaten debian/rules override_dh_auto_test make[1]: Map '/build/libpdb-redo-1.0.2' wordt binnengegaan make test make[2]: Map '/build/libpdb-redo-1.0.2' wordt binnengegaan >> test/unit-test.cpp >>> building unit-test g++ -std=c++17 -g -O2 -fdebug-prefix-map=/build/libpdb-redo-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wall -Wno-multichar -I include -O2 -DDATADIR='"/usr/share/libpdb-redo"' -DNDEBUG -Wl,-z,relro -Wl,-z,now -pthread -o test/unit-test obj/unit-test.o -L.libs -lpdb-redo -lcifpp -lzeep -lgsl -lgslcblas -lm -lnewuoa -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lboost_iostreams -lm cd test; BOND_INFO_FILE=/build/libpdb-redo-1.0.2/rsrc/bond-info.bin.gz LD_LIBRARY_PATH=../.libs ./unit-test Running 7 test cases... Missing bond information for compound U_K Missing information for compound 'U_K' Missing bond information for compound U_K *** No errors detected make[2]: Map '/build/libpdb-redo-1.0.2' wordt verlaten make[1]: Map '/build/libpdb-redo-1.0.2' wordt verlaten create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/libpdb-redo-1.0.2/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Map '/build/libpdb-redo-1.0.2' wordt binnengegaan install -d /build/libpdb-redo-1.0.2/debian/tmp/usr/lib/aarch64-linux-gnu /bin/sh /build/libpdb-redo-1.0.2/libtool --mode=install install libpdb-redo.la /build/libpdb-redo-1.0.2/debian/tmp/usr/lib/aarch64-linux-gnu libtool: install: install .libs/libpdb-redo.so.1.0.0 /build/libpdb-redo-1.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/libpdb-redo.so.1.0.0 libtool: install: (cd /build/libpdb-redo-1.0.2/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libpdb-redo.so.1.0.0 libpdb-redo.so.1 || { rm -f libpdb-redo.so.1 && ln -s libpdb-redo.so.1.0.0 libpdb-redo.so.1; }; }) libtool: install: (cd /build/libpdb-redo-1.0.2/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libpdb-redo.so.1.0.0 libpdb-redo.so || { rm -f libpdb-redo.so && ln -s libpdb-redo.so.1.0.0 libpdb-redo.so; }; }) libtool: install: install .libs/libpdb-redo.lai /build/libpdb-redo-1.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/libpdb-redo.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' install -d /build/libpdb-redo-1.0.2/debian/tmp/usr/include/pdb-redo for f in AtomShape.hpp BondMap.hpp ClipperWrapper.hpp DistanceMap.hpp MapMaker.hpp Minimizer.hpp Ramachandran.hpp ResolutionCalculator.hpp Restraints.hpp SkipList.hpp Statistics.hpp Symmetry-2.hpp; do install include/pdb-redo/$f /build/libpdb-redo-1.0.2/debian/tmp/usr/include/pdb-redo/$f; done install -d /build/libpdb-redo-1.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig install -m 644 libpdb-redo.pc /build/libpdb-redo-1.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig/libpdb-redo.pc install -d /build/libpdb-redo-1.0.2/debian/tmp/usr/share/libpdb-redo install -m 644 rsrc/bond-info.bin.gz /build/libpdb-redo-1.0.2/debian/tmp/usr/share/libpdb-redo/bond-info.bin make[1]: Map '/build/libpdb-redo-1.0.2' wordt verlaten dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: pakket 'libpdb-redo-dev' wordt gebouwd in '../libpdb-redo-dev_1.0.2-2_arm64.deb'. dpkg-deb: pakket 'libpdb-redo1' wordt gebouwd in '../libpdb-redo1_1.0.2-2_arm64.deb'. dpkg-deb: pakket 'libpdb-redo1-dbgsym' wordt gebouwd in '../libpdb-redo1-dbgsym_1.0.2-2_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libpdb-redo_1.0.2-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/10636/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/10636/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/10636 and its subdirectories I: Current time: Tue Jul 20 11:03:02 +14 2021 I: pbuilder-time-stamp: 1626728582