I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 14 15:51:04 +14 2022 I: pbuilder-time-stamp: 1663120264 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [hdmf_2.3.0-1.dsc] I: copying [./hdmf_2.3.0.orig.tar.gz] I: copying [./hdmf_2.3.0-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.m8WXuzfQ/trustedkeys.kbx': General error gpgv: Signature made Wed Dec 9 22:06:27 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./hdmf_2.3.0-1.dsc dpkg-source: info: extracting hdmf in hdmf-2.3.0 dpkg-source: info: unpacking hdmf_2.3.0.orig.tar.gz dpkg-source: info: unpacking hdmf_2.3.0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4657/tmp/hooks/D01_modify_environment starting debug: Running on codethink9-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/4657/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/4657/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/var/lib/jenkins HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=4657 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.fsQH5uem28/pbuilderrc_lXzX --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.fsQH5uem28/b2 --logfile b2/build.log --extrapackages usrmerge hdmf_2.3.0-1.dsc' SUDO_GID=117 SUDO_UID=110 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root USERNAME=root _='I: set' http_proxy=http://192.168.101.16:3128 I: uname -a Linux i-capture-the-hostname 4.15.0-153-generic #160-Ubuntu SMP Thu Jul 29 07:06:07 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Aug 5 2021 bash -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash -rwxr-xr-x 1 root root 101384 Sep 23 2020 date -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd -rwxr-xr-x 1 root root 89824 Sep 23 2020 df -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir -rwxr-xr-x 1 root root 76152 Jul 29 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 64856 Jul 29 2021 findmnt -rwsr-xr-x 1 root root 34824 Feb 27 2021 fusermount -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe -rwxr-xr-x 1 root root 93744 Mar 3 2021 gzip -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln -rwxr-xr-x 1 root root 52720 Feb 8 2020 login -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls -rwxr-xr-x 1 root root 161960 Jul 29 2021 lsblk -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 51368 Jul 29 2021 more -rwsr-xr-x 1 root root 51360 Jul 29 2021 mount -rwxr-xr-x 1 root root 14496 Jul 29 2021 mountpoint -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 5 2021 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Sep 14 15:51 sh -> bash lrwxrwxrwx 1 root root 4 Sep 13 05:47 sh.distrib -> dash -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty -rwsr-xr-x 1 root root 67776 Jul 29 2021 su -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync -rwxr-xr-x 1 root root 535768 Feb 17 2021 tar -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch -rwxr-xr-x 1 root root 31512 Sep 23 2020 true -rwxr-xr-x 1 root root 14264 Feb 27 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Jul 29 2021 umount -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir -rwxr-xr-x 1 root root 59584 Jul 29 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew I: user script /srv/workspace/pbuilder/4657/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dh-python, python3-setuptools, python3-all, debhelper-compat (= 13), python3-certifi, python3-chardet, python3-h5py (>= 2.9~), python3-idna, python3-numpy, python3-scipy, python3-dateutil, python3-requests, python3-ruamel.yaml, python3-six, python3-urllib3, python3-pandas, python3-unittest2 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3-certifi; however: Package python3-certifi is not installed. pbuilder-satisfydepends-dummy depends on python3-chardet; however: Package python3-chardet is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py (>= 2.9~); however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-idna; however: Package python3-idna is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-dateutil; however: Package python3-dateutil is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-ruamel.yaml; however: Package python3-ruamel.yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-six; however: Package python3-six is not installed. pbuilder-satisfydepends-dummy depends on python3-urllib3; however: Package python3-urllib3 is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-unittest2; however: Package python3-unittest2 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libhdf5-103-1{a} libhdf5-hl-100{a} libicu67{a} liblapack3{a} liblbfgsb0{a} liblzf1{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libsz2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-certifi{a} python3-chardet{a} python3-dateutil{a} python3-decorator{a} python3-distutils{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-lib2to3{a} python3-linecache2{a} python3-minimal{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-requests{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-traceback2{a} python3-tz{a} python3-unittest2{a} python3-urllib3{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-tables python3-xlwt wget 0 packages upgraded, 80 newly installed, 0 to remove and 0 not upgraded. Need to get 49.6 MB of archives. After unpacking 210 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8 [142 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-minimal arm64 3.9.2-1 [797 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 python3.9-minimal arm64 3.9.2-1 [1884 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 python3-minimal arm64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libmpdec3 arm64 2.5.1-1 [84.4 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 libreadline8 arm64 8.1-1 [160 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-stdlib arm64 3.9.2-1 [1658 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 python3.9 arm64 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 libpython3-stdlib arm64 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 python3 arm64 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 openssl arm64 1.1.1k-1 [829 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 ca-certificates all 20210119 [158 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 python3-distutils all 3.9.2-1 [143 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 libaec0 arm64 1.0.4-1 [19.8 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 libblas3 arm64 3.9.0-3 [101 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libgfortran5 arm64 10.2.1-6 [333 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libsz2 arm64 1.0.4-1 [6736 B] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libhdf5-103-1 arm64 1.10.6+repack-4 [1032 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libhdf5-hl-100 arm64 1.10.6+repack-4 [78.6 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 liblapack3 arm64 3.9.0-3 [1541 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 liblbfgsb0 arm64 3.0+dfsg.3-9 [24.5 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 liblzf1 arm64 3.6-3 [9860 B] Get: 58 http://deb.debian.org/debian bullseye/main arm64 python3-all arm64 3.9.2-3 [1056 B] Get: 59 http://deb.debian.org/debian bullseye/main arm64 python3-certifi all 2020.6.20-1 [151 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 python3-chardet all 4.0.0-1 [99.0 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 python3-six all 1.16.0-2 [17.5 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 python3-dateutil all 2.8.1-6 [79.2 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 python3-decorator all 4.4.2-2 [15.8 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 python3-numpy arm64 1:1.19.5-1 [3196 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 python3-h5py-serial arm64 2.10.0-9+b2 [602 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 python3-h5py all 2.10.0-9 [11.4 kB] Get: 68 http://deb.debian.org/debian bullseye/main arm64 python3-idna all 2.10-1 [37.4 kB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 python3-linecache2 all 1.0.0-4 [12.8 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 python3-tz all 2021.1-1 [34.8 kB] Get: 71 http://deb.debian.org/debian bullseye/main arm64 python3-pandas-lib arm64 1.1.5+dfsg-2 [2914 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 python3-pandas all 1.1.5+dfsg-2 [2096 kB] Get: 73 http://deb.debian.org/debian bullseye/main arm64 python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get: 75 http://deb.debian.org/debian bullseye/main arm64 python3-ruamel.yaml.clib arm64 0.2.2-1+b2 [108 kB] Get: 76 http://deb.debian.org/debian bullseye/main arm64 python3-ruamel.yaml all 0.16.12-2 [110 kB] Get: 77 http://deb.debian.org/debian bullseye/main arm64 python3-scipy arm64 1.6.0-2 [11.6 MB] Get: 78 http://deb.debian.org/debian bullseye/main arm64 python3-setuptools all 52.0.0-4 [366 kB] Get: 79 http://deb.debian.org/debian bullseye/main arm64 python3-traceback2 all 1.4.0-6 [16.6 kB] Get: 80 http://deb.debian.org/debian bullseye/main arm64 python3-unittest2 all 1.1.0-7 [75.5 kB] Fetched 49.6 MB in 1s (55.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_arm64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../1-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_arm64.deb ... 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Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20934 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_arm64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package openssl. 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Selecting previously unselected package libelf1:arm64. Preparing to unpack .../21-libelf1_0.183-1_arm64.deb ... Unpacking libelf1:arm64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.13+20210201-1_arm64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../23-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.9.10+dfsg-6.7_arm64.deb ... Unpacking libxml2:arm64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.21-4_arm64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. 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Selecting previously unselected package python3-requests. Preparing to unpack .../57-python3-requests_2.25.1+dfsg-2_all.deb ... Unpacking python3-requests (2.25.1+dfsg-2) ... Selecting previously unselected package python3-ruamel.yaml.clib:arm64. Preparing to unpack .../58-python3-ruamel.yaml.clib_0.2.2-1+b2_arm64.deb ... Unpacking python3-ruamel.yaml.clib:arm64 (0.2.2-1+b2) ... Selecting previously unselected package python3-ruamel.yaml. Preparing to unpack .../59-python3-ruamel.yaml_0.16.12-2_all.deb ... Unpacking python3-ruamel.yaml (0.16.12-2) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../60-python3-scipy_1.6.0-2_arm64.deb ... Unpacking python3-scipy (1.6.0-2) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../61-python3-setuptools_52.0.0-4_all.deb ... Unpacking python3-setuptools (52.0.0-4) ... Selecting previously unselected package python3-traceback2. 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Setting up libblas3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up liblzf1:arm64 (3.6-3) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libgfortran5:arm64 (10.2.1-6) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libmpdec3:arm64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up openssl (1.1.1k-1) ... Setting up libelf1:arm64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up libsz2:arm64 (1.0.4-1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up liblapack3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:arm64 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up libhdf5-103-1:arm64 (1.10.6+repack-4) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:arm64 (3.9.2-1) ... Setting up libpython3-stdlib:arm64 (3.9.2-3) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.3-9) ... Setting up libhdf5-hl-100:arm64 (1.10.6+repack-4) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up python3.9 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-tz (2021.1-1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-certifi (2020.6.20-1) ... Setting up python3-linecache2 (1.0.0-4) ... Setting up python3-idna (2.10-1) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-ruamel.yaml.clib:arm64 (0.2.2-1+b2) ... Setting up python3-traceback2 (1.4.0-6) ... Setting up python3-all (3.9.2-3) ... Setting up python3-chardet (4.0.0-1) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up python3-unittest2 (1.1.0-7) ... update-alternatives: using /usr/bin/python3-unit2 to provide /usr/bin/unit2 (unit2) in auto mode Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-ruamel.yaml (0.16.12-2) ... Setting up python3-scipy (1.6.0-2) ... Setting up python3-pandas-lib:arm64 (1.1.5+dfsg-2) ... Setting up python3-h5py-serial (2.10.0-9+b2) ... Setting up python3-pandas (1.1.5+dfsg-2) ... Setting up python3-h5py (2.10.0-9) ... Processing triggers for libc-bin (2.31-13) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl The following NEW packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 59.5 kB of archives. After this operation, 157 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main arm64 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:2 http://deb.debian.org/debian bullseye/main arm64 libtext-glob-perl all 0.11-1 [8888 B] Get:3 http://deb.debian.org/debian bullseye/main arm64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:4 http://deb.debian.org/debian bullseye/main arm64 usrmerge all 25 [13.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.5 kB in 0s (2160 kB/s) Selecting previously unselected package libnumber-compare-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26311 files and directories currently installed.) Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... Unpacking libnumber-compare-perl (0.03-1.1) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... Unpacking libtext-glob-perl (0.11-1) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... Unpacking libfile-find-rule-perl (0.34-1) ... Selecting previously unselected package usrmerge. Preparing to unpack .../archives/usrmerge_25_all.deb ... Unpacking usrmerge (25) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libnumber-compare-perl (0.03-1.1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up usrmerge (25) ... The system has been successfully converted. Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. I: Building the package hostname: Temporary failure in name resolution I: Running cd /build/hdmf-2.3.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../hdmf_2.3.0-1_source.changes dpkg-buildpackage: info: source package hdmf dpkg-buildpackage: info: source version 2.3.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from hdmf-2.3.0/debian/source/options: --extend-diff-ignore=^src/[^/]+\.egg-info/ debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py clean found these packages: ['hdmf', 'hdmf.validate', 'hdmf.testing', 'hdmf.spec', 'hdmf.common', 'hdmf.build', 'hdmf.backends', 'hdmf.common.io', 'hdmf.backends.hdf5'] ['h5py>=2.9,<3', 'numpy>=1.16,<1.19.4', 'scipy>=1.1,<2', 'pandas>=0.23,<2', 'ruamel.yaml>=0.15,<1', 'jsonschema>=2.6.0,<4'] running clean removing '/build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config found these packages: ['hdmf', 'hdmf.validate', 'hdmf.testing', 'hdmf.spec', 'hdmf.common', 'hdmf.build', 'hdmf.backends', 'hdmf.common.io', 'hdmf.backends.hdf5'] ['h5py>=2.9,<3', 'numpy>=1.16,<1.19.4', 'scipy>=1.1,<2', 'pandas>=0.23,<2', 'ruamel.yaml>=0.15,<1', 'jsonschema>=2.6.0,<4'] running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build found these packages: ['hdmf', 'hdmf.validate', 'hdmf.testing', 'hdmf.spec', 'hdmf.common', 'hdmf.build', 'hdmf.backends', 'hdmf.common.io', 'hdmf.backends.hdf5'] ['h5py>=2.9,<3', 'numpy>=1.16,<1.19.4', 'scipy>=1.1,<2', 'pandas>=0.23,<2', 'ruamel.yaml>=0.15,<1', 'jsonschema>=2.6.0,<4'] running build running build_py creating /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf copying src/hdmf/utils.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf copying src/hdmf/region.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf copying src/hdmf/query.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf copying src/hdmf/monitor.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf copying src/hdmf/data_utils.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf copying src/hdmf/container.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf copying src/hdmf/array.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf copying src/hdmf/_version.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf copying src/hdmf/_due.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf copying src/hdmf/__init__.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf creating /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/validate copying src/hdmf/validate/validator.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/validate copying src/hdmf/validate/errors.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/validate copying src/hdmf/validate/__init__.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/validate creating /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/testing copying src/hdmf/testing/validate_spec.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/testing copying src/hdmf/testing/utils.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/testing copying src/hdmf/testing/testcase.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/testing copying src/hdmf/testing/__init__.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/testing creating /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/spec copying src/hdmf/spec/write.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/spec copying src/hdmf/spec/spec.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/spec copying src/hdmf/spec/namespace.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/spec copying src/hdmf/spec/catalog.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/spec copying src/hdmf/spec/__init__.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/spec creating /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common copying src/hdmf/common/table.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common copying src/hdmf/common/sparse.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common copying src/hdmf/common/resources.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common copying src/hdmf/common/multi.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common copying src/hdmf/common/__init__.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common creating /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/build copying src/hdmf/build/warnings.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/build copying src/hdmf/build/objectmapper.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/build copying src/hdmf/build/map.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/build copying src/hdmf/build/manager.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/build copying src/hdmf/build/errors.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/build copying src/hdmf/build/builders.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/build copying src/hdmf/build/__init__.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/build creating /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/backends copying src/hdmf/backends/warnings.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/backends copying src/hdmf/backends/io.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/backends copying src/hdmf/backends/__init__.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/backends creating /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/io copying src/hdmf/common/io/table.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/io copying src/hdmf/common/io/resources.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/io copying src/hdmf/common/io/multi.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/io copying src/hdmf/common/io/__init__.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/io creating /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/backends/hdf5 copying src/hdmf/backends/hdf5/h5tools.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/backends/hdf5 copying src/hdmf/backends/hdf5/h5_utils.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/backends/hdf5 copying src/hdmf/backends/hdf5/__init__.py -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/backends/hdf5 creating /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/hdmf-common-schema creating /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/hdmf-common-schema/common copying src/hdmf/common/hdmf-common-schema/common/table.yaml -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/hdmf-common-schema/common copying src/hdmf/common/hdmf-common-schema/common/sparse.yaml -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/hdmf-common-schema/common copying src/hdmf/common/hdmf-common-schema/common/resources.yaml -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/hdmf-common-schema/common copying src/hdmf/common/hdmf-common-schema/common/namespace.yaml -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/hdmf-common-schema/common copying src/hdmf/common/hdmf-common-schema/common/base.yaml -> /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/hdmf-common-schema/common UPDATING /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/_version.py set /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/_version.py to '2.3.0' dh_auto_test -O--buildsystem=pybuild I: pybuild base:232: cd /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build; python3.9 -m unittest discover -v test_append_1_0_5 (tests.unit.back_compat_tests.test_1_1_0.Test1_1_0) Test whether we can append to files made by hdmf version 1.0.5 ... ok test_read_1_0_5 (tests.unit.back_compat_tests.test_1_1_0.Test1_1_0) Test whether we can read files made by hdmf version 1.0.5 ... ok test_build_added_attr (tests.unit.build_tests.mapper_tests.test_build.TestBuildDatasetAddedAttrs) Test build of BarHolder which can contain multiple extended BarData objects, which have a new attribute. ... ok test_build_correct_dtype (tests.unit.build_tests.mapper_tests.test_build.TestBuildDatasetNotRefinedDtype) Test build of BarDataHolder which contains a BarData. ... ok test_build_incorrect_dtype (tests.unit.build_tests.mapper_tests.test_build.TestBuildDatasetNotRefinedDtype) Test build of BarDataHolder which contains a BarData ... ok test_build_refined_dtype_convert (tests.unit.build_tests.mapper_tests.test_build.TestBuildDatasetRefinedDtype) Test build of BarDataHolder which contains a BarData with data that needs to be converted to the refined dtype. ... ok test_build_added_attr (tests.unit.build_tests.mapper_tests.test_build.TestBuildGroupAddedAttr) Test build of BarHolder which can contain multiple extended Bar objects, which have a new attribute. ... ok test_build_refined_attr (tests.unit.build_tests.mapper_tests.test_build.TestBuildGroupRefinedAttr) Test build of BarHolder which can contain multiple extended Bar objects, which have a modified attr2. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildMultiTypeInc) Test building a container which contains multiple containers of different types as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeDef) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeDef) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeDef) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeDef) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeInc) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeInc) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeInc) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeInc) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeIncUntypedGroup) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeIncUntypedGroup) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeIncUntypedGroup) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeIncUntypedGroup) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeDef) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeDef) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeDef) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeDef) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeInc) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeInc) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeInc) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeInc) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeIncUntypedGroup) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeIncUntypedGroup) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeIncUntypedGroup) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeIncUntypedGroup) Test building a container which contains no containers as the spec allows. ... ok test_build_data (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneUntyped) Test building a container which contains an untyped empty subgroup and an untyped non-empty dataset. ... ok test_build_empty_data (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneUntyped) Test building a container which contains an untyped empty subgroup and an untyped empty dataset. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeDef) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeDef) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeDef) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeDef) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeInc) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeInc) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeInc) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeInc) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeIncUntypedGroup) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeIncUntypedGroup) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeIncUntypedGroup) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeIncUntypedGroup) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeDef) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeDef) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeDef) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeDef) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeInc) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeInc) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeInc) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeInc) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeIncUntypedGroup) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeIncUntypedGroup) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeIncUntypedGroup) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeIncUntypedGroup) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeDef) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeDef) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeDef) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeDef) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeInc) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeInc) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeInc) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeInc) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeIncUntypedGroup) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeIncUntypedGroup) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeIncUntypedGroup) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeIncUntypedGroup) Test building a container which contains no containers as the spec allows. ... ok test_build_data (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneUntyped) Test building a container which contains an untyped empty subgroup and an untyped non-empty dataset. ... ok test_build_empty_data (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneUntyped) Test building a container which contains an untyped empty subgroup and an untyped empty dataset. ... ok test_constructor (tests.unit.build_tests.test_builder.TestDatasetBuilder) ... ok test_constructor_data_builder_dtype (tests.unit.build_tests.test_builder.TestDatasetBuilder) ... ok test_constructor_data_builder_no_dtype (tests.unit.build_tests.test_builder.TestDatasetBuilder) ... ok test_overwrite_data (tests.unit.build_tests.test_builder.TestDatasetBuilder) ... ok test_overwrite_dtype (tests.unit.build_tests.test_builder.TestDatasetBuilder) ... ok test_overwrite_parent (tests.unit.build_tests.test_builder.TestDatasetBuilder) ... ok test_overwrite_source (tests.unit.build_tests.test_builder.TestDatasetBuilder) ... ok test_repr (tests.unit.build_tests.test_builder.TestDatasetBuilder) ... ok test_set_data (tests.unit.build_tests.test_builder.TestDatasetBuilder) ... ok test_set_dtype (tests.unit.build_tests.test_builder.TestDatasetBuilder) ... ok test_constructor (tests.unit.build_tests.test_builder.TestGroupBuilder) ... ok test_constructor_dset_none (tests.unit.build_tests.test_builder.TestGroupBuilder) ... ok test_overwrite_location (tests.unit.build_tests.test_builder.TestGroupBuilder) ... ok test_repr (tests.unit.build_tests.test_builder.TestGroupBuilder) ... ok test_set_location (tests.unit.build_tests.test_builder.TestGroupBuilder) ... ok test_set_source (tests.unit.build_tests.test_builder.TestGroupBuilder) Test that setting source sets the children builder source. ... ok test_set_source_no_reset (tests.unit.build_tests.test_builder.TestGroupBuilder) Test that setting source does not set the children builder source if children already have a source. ... ok test_get_attr (tests.unit.build_tests.test_builder.TestGroupBuilderGetters) Test get() for attributes ... ok test_get_dataset (tests.unit.build_tests.test_builder.TestGroupBuilderGetters) Test get() for datasets ... ok test_get_group (tests.unit.build_tests.test_builder.TestGroupBuilderGetters) Test get() for groups ... ok test_get_group_deeper (tests.unit.build_tests.test_builder.TestGroupBuilderGetters) Test get() for groups deeper in hierarchy ... ok test_get_invalid_key (tests.unit.build_tests.test_builder.TestGroupBuilderGetters) Test get() for invalid key ... ok test_get_link (tests.unit.build_tests.test_builder.TestGroupBuilderGetters) Test get() for links ... ok test_getitem_attr (tests.unit.build_tests.test_builder.TestGroupBuilderGetters) Test __getitem__ for attributes ... ok test_getitem_dataset (tests.unit.build_tests.test_builder.TestGroupBuilderGetters) Test __getitem__ for datasets ... ok test_getitem_group (tests.unit.build_tests.test_builder.TestGroupBuilderGetters) Test __getitem__ for groups ... ok test_getitem_group_deeper (tests.unit.build_tests.test_builder.TestGroupBuilderGetters) Test __getitem__ for groups deeper in hierarchy ... ok test_getitem_invalid_key (tests.unit.build_tests.test_builder.TestGroupBuilderGetters) Test __getitem__ for invalid key ... ok test_getitem_invalid_key_deeper (tests.unit.build_tests.test_builder.TestGroupBuilderGetters) Test __getitem__ for invalid key ... ok test_getitem_link (tests.unit.build_tests.test_builder.TestGroupBuilderGetters) Test __getitem__ for links ... ok test_items (tests.unit.build_tests.test_builder.TestGroupBuilderGetters) Test items() ... ok test_keys (tests.unit.build_tests.test_builder.TestGroupBuilderGetters) Test keys() ... ok test_path (tests.unit.build_tests.test_builder.TestGroupBuilderGetters) ... ok test_values (tests.unit.build_tests.test_builder.TestGroupBuilderGetters) Test values() ... ok test_is_empty_false_attribute (tests.unit.build_tests.test_builder.TestGroupBuilderIsEmpty) Test is_empty() when group has an attribute ... ok test_is_empty_false_dataset (tests.unit.build_tests.test_builder.TestGroupBuilderIsEmpty) Test is_empty() when group has a dataset ... ok test_is_empty_false_group_attribute (tests.unit.build_tests.test_builder.TestGroupBuilderIsEmpty) Test is_empty() when group has subgroup with an attribute ... ok test_is_empty_false_group_dataset (tests.unit.build_tests.test_builder.TestGroupBuilderIsEmpty) Test is_empty() when group has a subgroup with a dataset ... ok test_is_empty_false_group_link (tests.unit.build_tests.test_builder.TestGroupBuilderIsEmpty) Test is_empty() when group has subgroup with a link ... ok test_is_empty_false_link (tests.unit.build_tests.test_builder.TestGroupBuilderIsEmpty) Test is_empty() when group has a link ... ok test_is_empty_true (tests.unit.build_tests.test_builder.TestGroupBuilderIsEmpty) Test empty when group has nothing in it ... ok test_is_empty_true_group_empty (tests.unit.build_tests.test_builder.TestGroupBuilderIsEmpty) Test is_empty() when group has an empty subgroup ... ok test_set_attribute (tests.unit.build_tests.test_builder.TestGroupBuilderSetters) ... ok test_set_dataset (tests.unit.build_tests.test_builder.TestGroupBuilderSetters) ... ok test_set_exists_wrong_type (tests.unit.build_tests.test_builder.TestGroupBuilderSetters) ... ok test_set_group (tests.unit.build_tests.test_builder.TestGroupBuilderSetters) ... ok test_set_link (tests.unit.build_tests.test_builder.TestGroupBuilderSetters) ... ok test_setitem_disabled (tests.unit.build_tests.test_builder.TestGroupBuilderSetters) Test __setitem__ is disabled ... ok test_constructor (tests.unit.build_tests.test_builder.TestLinkBuilder) ... ok test_constructor_no_name (tests.unit.build_tests.test_builder.TestLinkBuilder) ... ok test_constructor (tests.unit.build_tests.test_builder.TestReferenceBuilder) ... ok test_constructor (tests.unit.build_tests.test_builder.TestRegionBuilder) ... ok test_build (tests.unit.build_tests.test_io_manager.TestBuildManager) ... ok test_build_memoization (tests.unit.build_tests.test_io_manager.TestBuildManager) ... ok test_construct (tests.unit.build_tests.test_io_manager.TestBuildManager) ... ok test_construct_memoization (tests.unit.build_tests.test_io_manager.TestBuildManager) ... ok test_build (tests.unit.build_tests.test_io_manager.TestNestedContainersNoSubgroups) Test default mapping for an Container that has an Container as an attribute value ... ok test_construct (tests.unit.build_tests.test_io_manager.TestNestedContainersNoSubgroups) ... ok test_build (tests.unit.build_tests.test_io_manager.TestNestedContainersSubgroup) Test default mapping for an Container that has an Container as an attribute value ... ok test_construct (tests.unit.build_tests.test_io_manager.TestNestedContainersSubgroup) ... ok test_build (tests.unit.build_tests.test_io_manager.TestNestedContainersSubgroupSubgroup) Test default mapping for an Container that has an Container as an attribute value ... ok test_construct (tests.unit.build_tests.test_io_manager.TestNestedContainersSubgroupSubgroup) ... ok test_build (tests.unit.build_tests.test_io_manager.TestNoAttribute) Test that an error is raised when a spec is mapped to a non-existent container attribute. ... ok test_get_ns_dt (tests.unit.build_tests.test_io_manager.TestTypeMap) ... ok test_get_ns_dt_missing (tests.unit.build_tests.test_io_manager.TestTypeMap) ... ok test_ascii_spec (tests.unit.build_tests.test_io_map.TestConvertDtype) ... ok test_bool_spec (tests.unit.build_tests.test_io_map.TestConvertDtype) ... ok test_compound_type (tests.unit.build_tests.test_io_map.TestConvertDtype) Test that convert_dtype passes through arguments if spec dtype is a list without any validation. ... ok test_convert_to_64bit_spec (tests.unit.build_tests.test_io_map.TestConvertDtype) Test that if given any value for a spec with a 64-bit dtype, convert_dtype will convert to the spec type. ... ok test_convert_to_bool_spec (tests.unit.build_tests.test_io_map.TestConvertDtype) Test conversion of various types to bool. ... ok test_convert_to_float32_spec (tests.unit.build_tests.test_io_map.TestConvertDtype) Test conversion of various types to float32. ... ok test_convert_to_int16_spec (tests.unit.build_tests.test_io_map.TestConvertDtype) Test conversion of various types to int16. ... ok test_convert_to_int32_spec (tests.unit.build_tests.test_io_map.TestConvertDtype) Test conversion of various types to int32. ... ok test_convert_to_uint16_spec (tests.unit.build_tests.test_io_map.TestConvertDtype) Test conversion of various types to uint16. ... ok test_convert_to_uint32_spec (tests.unit.build_tests.test_io_map.TestConvertDtype) Test conversion of various types to uint32. ... ok test_dci_input (tests.unit.build_tests.test_io_map.TestConvertDtype) ... ok test_isodatetime_spec (tests.unit.build_tests.test_io_map.TestConvertDtype) ... ok test_no_spec (tests.unit.build_tests.test_io_map.TestConvertDtype) ... ok test_numeric_spec (tests.unit.build_tests.test_io_map.TestConvertDtype) ... ok test_override_type_int_restrict_precision (tests.unit.build_tests.test_io_map.TestConvertDtype) ... ok test_override_type_none_to_bool (tests.unit.build_tests.test_io_map.TestConvertDtype) ... ok test_override_type_numeric_to_uint (tests.unit.build_tests.test_io_map.TestConvertDtype) ... ok test_override_type_numeric_to_uint_list (tests.unit.build_tests.test_io_map.TestConvertDtype) ... ok test_text_spec (tests.unit.build_tests.test_io_map.TestConvertDtype) ... ok test_value_none (tests.unit.build_tests.test_io_map.TestConvertDtype) ... ok test_build_docval (tests.unit.build_tests.test_io_map.TestDynamicContainer) ... ok test_build_docval_default_name (tests.unit.build_tests.test_io_map.TestDynamicContainer) Test that docval generation for a class with a default name has the default value for name set. ... ok test_build_docval_default_value (tests.unit.build_tests.test_io_map.TestDynamicContainer) Test that docval generation for a class with an additional optional field has the default value set. ... ok test_build_docval_default_value_none (tests.unit.build_tests.test_io_map.TestDynamicContainer) Test that docval generation for a class with an additional optional field has default: None. ... ok test_build_docval_fixed_name (tests.unit.build_tests.test_io_map.TestDynamicContainer) Test that docval generation for a class with a fixed name does not contain a docval arg for name. ... ok test_build_docval_link (tests.unit.build_tests.test_io_map.TestDynamicContainer) ... ok test_build_docval_shape (tests.unit.build_tests.test_io_map.TestDynamicContainer) Test that docval generation for a class with shape has the shape set. ... ok test_dynamic_container_composition (tests.unit.build_tests.test_io_map.TestDynamicContainer) ... ok test_dynamic_container_composition_missing_type (tests.unit.build_tests.test_io_map.TestDynamicContainer) ... ok test_dynamic_container_composition_reverse_order (tests.unit.build_tests.test_io_map.TestDynamicContainer) ... ok test_dynamic_container_constructor (tests.unit.build_tests.test_io_map.TestDynamicContainer) ... ok test_dynamic_container_constructor_name (tests.unit.build_tests.test_io_map.TestDynamicContainer) ... ok test_dynamic_container_constructor_name_default_name (tests.unit.build_tests.test_io_map.TestDynamicContainer) ... ok test_dynamic_container_creation (tests.unit.build_tests.test_io_map.TestDynamicContainer) ... ok test_dynamic_container_creation_defaults (tests.unit.build_tests.test_io_map.TestDynamicContainer) ... ok test_dynamic_container_default_name (tests.unit.build_tests.test_io_map.TestDynamicContainer) ... ok test_dynamic_container_fixed_name (tests.unit.build_tests.test_io_map.TestDynamicContainer) Test that dynamic class generation for an extended type with a fixed name works. ... ok test_multi_container_spec (tests.unit.build_tests.test_io_map.TestDynamicContainer) ... ok test_default_mapping (tests.unit.build_tests.test_io_map.TestFixedAttributeValue) ... ok test_required_attr_missing (tests.unit.build_tests.test_io_map.TestFixedAttributeValue) Test mapping when one container has a required attribute with a fixed value. ... ok test_get_subspec_data_type_noname (tests.unit.build_tests.test_io_map.TestGetSubSpec) ... ok test_get_subspec_named (tests.unit.build_tests.test_io_map.TestGetSubSpec) ... ok test_build_broken_link_no_parent (tests.unit.build_tests.test_io_map.TestLinkedContainer) Test that building a container with a broken link that has no parent raises an error. ... ok test_build_broken_link_parent (tests.unit.build_tests.test_io_map.TestLinkedContainer) Test that building a container with a broken link that has a parent raises an error. ... expected failure test_build_child_link (tests.unit.build_tests.test_io_map.TestLinkedContainer) Test default mapping functionality when one container contains a child link to another container ... ok test_build_1d (tests.unit.build_tests.test_io_map.TestMapStrings) ... ok test_build_dataio (tests.unit.build_tests.test_io_map.TestMapStrings) ... ok test_build_scalar (tests.unit.build_tests.test_io_map.TestMapStrings) ... ok test_default_mapping (tests.unit.build_tests.test_io_map.TestMissingRequiredAttribute) ... ok test_required_attr_missing (tests.unit.build_tests.test_io_map.TestMissingRequiredAttribute) Test mapping when one container is missing a required attribute. ... ok test_default_mapping (tests.unit.build_tests.test_io_map.TestMissingRequiredAttributeRef) ... ok test_required_attr_ref_missing (tests.unit.build_tests.test_io_map.TestMissingRequiredAttributeRef) Test mapping when one container is missing a required attribute reference. ... ok test_default_mapping (tests.unit.build_tests.test_io_map.TestMissingRequiredDataset) ... ok test_required_dataset_missing (tests.unit.build_tests.test_io_map.TestMissingRequiredDataset) Test mapping when one container is missing a required dataset. ... ok test_default_mapping (tests.unit.build_tests.test_io_map.TestMissingRequiredGroup) ... ok test_required_group_missing (tests.unit.build_tests.test_io_map.TestMissingRequiredGroup) Test mapping when one container is missing a required group. ... ok test_bad_value (tests.unit.build_tests.test_io_map.TestObjectMapperBadValue) Test that an error is raised if the container attribute value for a spec with a data type is not a container ... ok test_default_mapping (tests.unit.build_tests.test_io_map.TestObjectMapperContainer) ... ok test_default_mapping_keys (tests.unit.build_tests.test_io_map.TestObjectMapperContainer) ... ok test_build (tests.unit.build_tests.test_io_map.TestObjectMapperNested) Test default mapping functionality when object attributes map to an attribute deeper ... ok test_construct (tests.unit.build_tests.test_io_map.TestObjectMapperNested) Test default mapping functionality when object attributes map to an attribute ... ok test_default_mapping (tests.unit.build_tests.test_io_map.TestObjectMapperNested) ... ok test_default_mapping_keys (tests.unit.build_tests.test_io_map.TestObjectMapperNested) ... ok test_remap_keys (tests.unit.build_tests.test_io_map.TestObjectMapperNested) ... ok test_build (tests.unit.build_tests.test_io_map.TestObjectMapperNoNesting) Test default mapping functionality when no attributes are nested ... ok test_build_empty (tests.unit.build_tests.test_io_map.TestObjectMapperNoNesting) Test default mapping functionality when no attributes are nested ... ok test_construct (tests.unit.build_tests.test_io_map.TestObjectMapperNoNesting) ... ok test_default_mapping (tests.unit.build_tests.test_io_map.TestObjectMapperNoNesting) ... ok test_default_mapping_keys (tests.unit.build_tests.test_io_map.TestObjectMapperNoNesting) ... ok test_default_mapping (tests.unit.build_tests.test_io_map.TestOptionalEmptyGroup) ... ok test_optional_group_empty (tests.unit.build_tests.test_io_map.TestOptionalEmptyGroup) Test mapping when one container has an optional empty group. ... ok test_optional_group_not_empty (tests.unit.build_tests.test_io_map.TestOptionalEmptyGroup) Test mapping when one container has an optional not empty group. ... ok test_build_attr_ref (tests.unit.build_tests.test_io_map.TestReference) Test default mapping functionality when one container contains an attribute reference to another container. ... ok test_build_attr_ref_invalid (tests.unit.build_tests.test_io_map.TestReference) Test default mapping functionality when one container contains an attribute reference to another container. ... ok test_default_mapping (tests.unit.build_tests.test_io_map.TestRequiredEmptyGroup) ... ok test_required_group_empty (tests.unit.build_tests.test_io_map.TestRequiredEmptyGroup) Test mapping when one container has a required empty group. ... ok test_get_map (tests.unit.build_tests.test_io_map.TestTypeMap) ... ok test_get_map_register (tests.unit.build_tests.test_io_map.TestTypeMap) ... ok test_get_map_unique_mappers (tests.unit.build_tests.test_io_map.TestTypeMap) ... ok test_build (tests.unit.build_tests.test_io_map_data.TestBuildCompoundDatasetOfReferences) Test default mapping functionality when no attributes are nested ... ok test_build (tests.unit.build_tests.test_io_map_data.TestBuildDatasetOfReferencesUnbuiltTarget) Test default mapping functionality when no attributes are nested ... ok test_build (tests.unit.build_tests.test_io_map_data.TestBuildTypedDatasetOfReferences) Test default mapping functionality when no attributes are nested ... ok test_build (tests.unit.build_tests.test_io_map_data.TestBuildUntypedDatasetOfReferences) Test default mapping functionality when no attributes are nested ... ok test_append (tests.unit.build_tests.test_io_map_data.TestDataMap) ... ok test_build (tests.unit.build_tests.test_io_map_data.TestDataMap) Test default mapping functionality when no attributes are nested ... ok test_build_empty_data (tests.unit.build_tests.test_io_map_data.TestDataMap) Test building of a Data object with empty data. ... ok test_extend (tests.unit.build_tests.test_io_map_data.TestDataMap) ... ok test_construct_scalar_dataset (tests.unit.build_tests.test_io_map_data.TestDataMapScalar) Test constructing a Data object with an h5py.Dataset with shape (1, ) for scalar spec. ... ok test_construct_scalar_compound_dataset (tests.unit.build_tests.test_io_map_data.TestDataMapScalarCompound) Test construct on a compound h5py.Dataset with shape (1, ) for scalar spec does not resolve the data. ... ok test_base_types (tests.unit.common.test_common.TestCommonTypeMap) ... ok test_roundtrip (tests.unit.common.test_multi.SimpleMultiContainerRoundTrip) Test whether the container read from a written file is the same as the original file. ... ok test_roundtrip_export (tests.unit.common.test_multi.SimpleMultiContainerRoundTrip) Test whether the container read from a written and then exported file is the same as the original file. ... ok test_add_keys (tests.unit.common.test_resources.TestExternalResources) ... ok test_add_ref (tests.unit.common.test_resources.TestExternalResources) ... ok test_add_ref_bad_arg (tests.unit.common.test_resources.TestExternalResources) ... ok test_add_ref_same_key_diff_objfield (tests.unit.common.test_resources.TestExternalResources) ... ok test_add_ref_same_keyname (tests.unit.common.test_resources.TestExternalResources) ... ok test_add_ref_two_keys (tests.unit.common.test_resources.TestExternalResources) ... ok test_add_ref_two_resources (tests.unit.common.test_resources.TestExternalResources) ... ok test_get_keys (tests.unit.common.test_resources.TestExternalResources) ... ok test_get_keys_subset (tests.unit.common.test_resources.TestExternalResources) ... ok test_keys_roundtrip (tests.unit.common.test_resources.TestExternalResources) ... ok test_piecewise_add (tests.unit.common.test_resources.TestExternalResources) ... ok test_roundtrip (tests.unit.common.test_resources.TestExternalResources) Test whether the container read from a written file is the same as the original file. ... ok test_roundtrip_export (tests.unit.common.test_resources.TestExternalResources) Test whether the container read from a written and then exported file is the same as the original file. ... ok test_get_key (tests.unit.common.test_resources.TestExternalResourcesGetKey) ... ok test_get_key_doesnt_exist (tests.unit.common.test_resources.TestExternalResourcesGetKey) ... ok test_get_key_same_keyname_all (tests.unit.common.test_resources.TestExternalResourcesGetKey) ... ok test_get_key_same_keyname_specific (tests.unit.common.test_resources.TestExternalResourcesGetKey) ... ok test_get_key_w_bad_object_info (tests.unit.common.test_resources.TestExternalResourcesGetKey) ... ok test_get_key_w_object_info (tests.unit.common.test_resources.TestExternalResourcesGetKey) ... ok test_2d_data (tests.unit.common.test_sparse.TestCSRMatrix) ... ok test_array_bad_dim (tests.unit.common.test_sparse.TestCSRMatrix) ... ok test_constructor_bad_indices (tests.unit.common.test_sparse.TestCSRMatrix) ... ok test_constructor_bad_indices_dim (tests.unit.common.test_sparse.TestCSRMatrix) ... ok test_constructor_bad_shape (tests.unit.common.test_sparse.TestCSRMatrix) ... ok test_constructor_indices_missing (tests.unit.common.test_sparse.TestCSRMatrix) ... ok test_from_sparse_matrix (tests.unit.common.test_sparse.TestCSRMatrix) ... ok test_getattrs (tests.unit.common.test_sparse.TestCSRMatrix) ... ok test_to_spmat (tests.unit.common.test_sparse.TestCSRMatrix) ... ok test_roundtrip (tests.unit.common.test_sparse.TestCSRMatrixRoundTrip) Test whether the container read from a written file is the same as the original file. ... ok test_roundtrip_export (tests.unit.common.test_sparse.TestCSRMatrixRoundTrip) Test whether the container read from a written and then exported file is the same as the original file. ... ok test_get_int (tests.unit.common.test_table.DynamicTableRegionRoundTrip) ... ok test_get_list (tests.unit.common.test_table.DynamicTableRegionRoundTrip) ... ok test_get_nodf_int (tests.unit.common.test_table.DynamicTableRegionRoundTrip) ... ok test_get_nodf_list (tests.unit.common.test_table.DynamicTableRegionRoundTrip) ... ok test_get_nodf_slice (tests.unit.common.test_table.DynamicTableRegionRoundTrip) ... ok test_get_slice (tests.unit.common.test_table.DynamicTableRegionRoundTrip) ... ok test_getitem_badcol (tests.unit.common.test_table.DynamicTableRegionRoundTrip) ... ok test_getitem_int (tests.unit.common.test_table.DynamicTableRegionRoundTrip) ... ok test_getitem_list (tests.unit.common.test_table.DynamicTableRegionRoundTrip) ... ok test_getitem_oor (tests.unit.common.test_table.DynamicTableRegionRoundTrip) ... ok test_getitem_slice (tests.unit.common.test_table.DynamicTableRegionRoundTrip) ... ok test_roundtrip (tests.unit.common.test_table.DynamicTableRegionRoundTrip) Test whether the container read from a written file is the same as the original file. ... ok test_roundtrip_export (tests.unit.common.test_table.DynamicTableRegionRoundTrip) Test whether the container read from a written and then exported file is the same as the original file. ... ok test_double_index (tests.unit.common.test_table.TestDTDoubleIndex) ... ok test_double_index_colnames (tests.unit.common.test_table.TestDTDoubleIndex) ... ok test_double_index_reverse (tests.unit.common.test_table.TestDTDoubleIndex) ... ok test_double_index_reverse_colnames (tests.unit.common.test_table.TestDTDoubleIndex) ... ok test_index (tests.unit.common.test_table.TestDTDoubleIndexSkipMiddle) ... ok test_dtr_references (tests.unit.common.test_table.TestDTRReferences) Test roundtrip of a table with a ragged DTR to another table containing a column of references. ... ok test_roundtrip (tests.unit.common.test_table.TestDataIOColumns) ... ok test_roundtrip_export (tests.unit.common.test_table.TestDataIOColumns) Test whether the container read from a written and then exported file is the same as the original file. ... ok test_append (tests.unit.common.test_table.TestDataIOIndex) Write the container to an HDF5 file, read the container from the file, and append to it. ... ok test_roundtrip (tests.unit.common.test_table.TestDataIOIndex) Test whether the container read from a written file is the same as the original file. ... ok test_roundtrip_export (tests.unit.common.test_table.TestDataIOIndex) Test whether the container read from a written and then exported file is the same as the original file. ... ok test_roundtrip (tests.unit.common.test_table.TestDataIOIndexedColumns) ... ok test_roundtrip_export (tests.unit.common.test_table.TestDataIOIndexedColumns) Test whether the container read from a written and then exported file is the same as the original file. ... ok test_add_vector (tests.unit.common.test_table.TestDoubleIndex) ... ok test_index (tests.unit.common.test_table.TestDoubleIndex) ... ok test_roundtrip (tests.unit.common.test_table.TestDoubleIndexRoundtrip) Test whether the container read from a written file is the same as the original file. ... ok test_roundtrip_export (tests.unit.common.test_table.TestDoubleIndexRoundtrip) Test whether the container read from a written and then exported file is the same as the original file. ... ok test_add_column (tests.unit.common.test_table.TestDynamicTable) ... ok test_add_column_existing_attr (tests.unit.common.test_table.TestDynamicTable) ... ok test_add_column_multi_index (tests.unit.common.test_table.TestDynamicTable) ... ok test_add_column_twice (tests.unit.common.test_table.TestDynamicTable) ... ok test_add_column_vectorindex (tests.unit.common.test_table.TestDynamicTable) ... ok test_add_row (tests.unit.common.test_table.TestDynamicTable) ... ok test_auto_multi_index (tests.unit.common.test_table.TestDynamicTable) ... ok test_bad_id_type_error (tests.unit.common.test_table.TestDynamicTable) ... ok test_colnames_none (tests.unit.common.test_table.TestDynamicTable) ... ok test_constructor_ElementIdentifier_ids (tests.unit.common.test_table.TestDynamicTable) ... ok test_constructor_bad_columns (tests.unit.common.test_table.TestDynamicTable) ... ok test_constructor_colnames (tests.unit.common.test_table.TestDynamicTable) Test that passing colnames correctly sets the order of the columns. ... ok test_constructor_colnames_no_columns (tests.unit.common.test_table.TestDynamicTable) Test that passing colnames without columns raises an error. ... ok test_constructor_colnames_vectorindex (tests.unit.common.test_table.TestDynamicTable) Test that passing colnames with a VectorIndex column puts the index in the right location in columns. ... ok test_constructor_colnames_vectorindex_rev (tests.unit.common.test_table.TestDynamicTable) Test that passing colnames with a VectorIndex column puts the index in the right location in columns. ... ok test_constructor_dup_index (tests.unit.common.test_table.TestDynamicTable) Test that passing two indices for the same column raises an error. ... ok test_constructor_ids (tests.unit.common.test_table.TestDynamicTable) ... ok test_constructor_ids_bad_ids (tests.unit.common.test_table.TestDynamicTable) ... ok test_constructor_ids_default (tests.unit.common.test_table.TestDynamicTable) ... ok test_constructor_index_missing_target (tests.unit.common.test_table.TestDynamicTable) Test that passing an index without its target raises an error. ... ok test_constructor_spec (tests.unit.common.test_table.TestDynamicTable) ... ok test_constructor_table_columns (tests.unit.common.test_table.TestDynamicTable) ... ok test_constructor_unequal_length_columns (tests.unit.common.test_table.TestDynamicTable) ... ok test_enforce_unique_id_error (tests.unit.common.test_table.TestDynamicTable) ... ok test_extra_columns (tests.unit.common.test_table.TestDynamicTable) ... ok test_from_dataframe (tests.unit.common.test_table.TestDynamicTable) ... ok test_from_dataframe_dup_attr (tests.unit.common.test_table.TestDynamicTable) Test that when a DynamicTable is generated from a dataframe where one of the column names is an existing ... ok test_from_dataframe_eq (tests.unit.common.test_table.TestDynamicTable) ... ok test_get (tests.unit.common.test_table.TestDynamicTable) ... ok test_get_item (tests.unit.common.test_table.TestDynamicTable) ... ok test_get_not_found (tests.unit.common.test_table.TestDynamicTable) ... ok test_get_not_found_default (tests.unit.common.test_table.TestDynamicTable) ... ok test_getitem_col_select_and_row_slice (tests.unit.common.test_table.TestDynamicTable) ... ok test_getitem_column (tests.unit.common.test_table.TestDynamicTable) ... ok test_getitem_invalid_keytype (tests.unit.common.test_table.TestDynamicTable) ... ok test_getitem_list_idx (tests.unit.common.test_table.TestDynamicTable) ... ok test_getitem_point_idx (tests.unit.common.test_table.TestDynamicTable) ... ok test_getitem_point_idx_colidx (tests.unit.common.test_table.TestDynamicTable) ... ok test_getitem_point_idx_colname (tests.unit.common.test_table.TestDynamicTable) ... ok test_getitem_row_num (tests.unit.common.test_table.TestDynamicTable) ... ok test_getitem_row_slice (tests.unit.common.test_table.TestDynamicTable) ... ok test_getitem_row_slice_with_step (tests.unit.common.test_table.TestDynamicTable) ... ok test_id_search (tests.unit.common.test_table.TestDynamicTable) ... ok test_index_out_of_bounds (tests.unit.common.test_table.TestDynamicTable) ... ok test_init_columns_existing_attr (tests.unit.common.test_table.TestDynamicTable) ... ok test_missing_columns (tests.unit.common.test_table.TestDynamicTable) ... ok test_nd_array_to_df (tests.unit.common.test_table.TestDynamicTable) ... ok test_not_enforce_unique_id_error (tests.unit.common.test_table.TestDynamicTable) ... ok test_pandas_roundtrip (tests.unit.common.test_table.TestDynamicTable) ... ok test_repr (tests.unit.common.test_table.TestDynamicTable) ... ok test_to_dataframe (tests.unit.common.test_table.TestDynamicTable) ... ok test_roundtrip (tests.unit.common.test_table.TestDynamicTableAddIndexRoundTrip) Test whether the container read from a written file is the same as the original file. ... ok test_roundtrip_export (tests.unit.common.test_table.TestDynamicTableAddIndexRoundTrip) Test whether the container read from a written and then exported file is the same as the original file. ... ok test_add_opt_column (tests.unit.common.test_table.TestDynamicTableClassColumns) Test that adding an optional column from __columns__ with matching specs except for description works. ... ok test_add_opt_column_after_data (tests.unit.common.test_table.TestDynamicTableClassColumns) Test that adding an optional column from __columns__ with data works. ... ok test_add_opt_column_mismatched_col_cls (tests.unit.common.test_table.TestDynamicTableClassColumns) Test that adding an optional column from __columns__ with non-matched table raises a warning. ... ok test_add_opt_column_mismatched_index_data (tests.unit.common.test_table.TestDynamicTableClassColumns) Test that adding an optional column from __columns__ with non-matched table raises a warning. ... ok test_add_opt_column_mismatched_index_true (tests.unit.common.test_table.TestDynamicTableClassColumns) Test that adding an optional column from __columns__ with non-matched table raises a warning. ... ok test_add_opt_column_mismatched_table_table (tests.unit.common.test_table.TestDynamicTableClassColumns) Test that adding an optional column from __columns__ with non-matched table raises a warning. ... ok test_add_opt_column_mismatched_table_true (tests.unit.common.test_table.TestDynamicTableClassColumns) Test that adding an optional column from __columns__ with non-matched table raises a warning. ... ok test_add_opt_column_twice (tests.unit.common.test_table.TestDynamicTableClassColumns) Test that adding an optional column from __columns__ twice fails the second time. ... ok test_add_opt_ind_column_after_data (tests.unit.common.test_table.TestDynamicTableClassColumns) Test that adding an optional, indexed column from __columns__ with data works. ... ok test_add_req_column (tests.unit.common.test_table.TestDynamicTableClassColumns) Test that adding a required column from __columns__ raises an error. ... ok test_add_req_ind_column (tests.unit.common.test_table.TestDynamicTableClassColumns) Test that adding a required, indexed column from __columns__ raises an error. ... ok test_add_row_opt_column (tests.unit.common.test_table.TestDynamicTableClassColumns) Test that adding a row with an optional column works. ... ok test_add_row_opt_column_after_data (tests.unit.common.test_table.TestDynamicTableClassColumns) Test that adding a row with an optional column after adding a row without the column raises an error. ... ok test_bad_predefined_columns (tests.unit.common.test_table.TestDynamicTableClassColumns) Test that gathering columns across a type hierarchy works. ... ok test_gather_columns_inheritance (tests.unit.common.test_table.TestDynamicTableClassColumns) Test that gathering columns across a type hierarchy works. ... ok test_init (tests.unit.common.test_table.TestDynamicTableClassColumns) Test that required columns, and not optional columns, in __columns__ are created on init. ... ok test_init_columns_add_dup_column (tests.unit.common.test_table.TestDynamicTableClassColumns) Test that passing two columns with the same name raises an error. ... ok test_init_columns_add_opt_column (tests.unit.common.test_table.TestDynamicTableClassColumns) Test that passing an optional column to init works. ... ok test_init_columns_add_req_column (tests.unit.common.test_table.TestDynamicTableClassColumns) Test that passing a required column to init works. ... ok test_init_columns_add_req_column_mismatch_index (tests.unit.common.test_table.TestDynamicTableClassColumns) Test that passing a required column that does not match the predefined column specs raises an error. ... ok test_init_columns_add_req_column_mismatch_table (tests.unit.common.test_table.TestDynamicTableClassColumns) Test that passing a required column that does not match the predefined column specs raises an error. ... ok test_roundtrip (tests.unit.common.test_table.TestDynamicTableInitIndexRoundTrip) Test whether the container read from a written file is the same as the original file. ... ok test_roundtrip_export (tests.unit.common.test_table.TestDynamicTableInitIndexRoundTrip) Test whether the container read from a written and then exported file is the same as the original file. ... ok test_dynamic_table_region_getitem_bad_index (tests.unit.common.test_table.TestDynamicTableRegion) ... ok test_dynamic_table_region_getitem_single_cell (tests.unit.common.test_table.TestDynamicTableRegion) ... ok test_dynamic_table_region_getitem_single_row_by_index (tests.unit.common.test_table.TestDynamicTableRegion) ... ok test_dynamic_table_region_getitem_slice (tests.unit.common.test_table.TestDynamicTableRegion) ... ok test_dynamic_table_region_getitem_slice_of_column (tests.unit.common.test_table.TestDynamicTableRegion) ... ok test_dynamic_table_region_iteration (tests.unit.common.test_table.TestDynamicTableRegion) ... ok test_dynamic_table_region_set_table_prop (tests.unit.common.test_table.TestDynamicTableRegion) ... ok test_dynamic_table_region_set_table_prop_to_none (tests.unit.common.test_table.TestDynamicTableRegion) ... ok test_dynamic_table_region_set_with_bad_data (tests.unit.common.test_table.TestDynamicTableRegion) ... skipped 'we no longer check data contents for performance reasons' test_dynamic_table_region_shape (tests.unit.common.test_table.TestDynamicTableRegion) ... ok test_dynamic_table_region_table_prop (tests.unit.common.test_table.TestDynamicTableRegion) ... ok test_dynamic_table_region_to_dataframe (tests.unit.common.test_table.TestDynamicTableRegion) ... ok test_dynamic_table_region_to_dataframe_exclude_cols (tests.unit.common.test_table.TestDynamicTableRegion) ... ok test_indexed_dynamic_table_region (tests.unit.common.test_table.TestDynamicTableRegion) ... ok test_repr (tests.unit.common.test_table.TestDynamicTableRegion) ... ok test_index_out_of_bounds (tests.unit.common.test_table.TestDynamicTableRoundTrip) ... ok test_roundtrip (tests.unit.common.test_table.TestDynamicTableRoundTrip) Test whether the container read from a written file is the same as the original file. ... ok test_roundtrip_export (tests.unit.common.test_table.TestDynamicTableRoundTrip) Test whether the container read from a written and then exported file is the same as the original file. ... ok test_identifier_search_single_int (tests.unit.common.test_table.TestElementIdentifiers) ... ok test_identifier_search_single_int_not_found (tests.unit.common.test_table.TestElementIdentifiers) ... ok test_identifier_search_single_list (tests.unit.common.test_table.TestElementIdentifiers) ... ok test_identifier_search_single_list_all_match (tests.unit.common.test_table.TestElementIdentifiers) ... ok test_identifier_search_single_list_not_found (tests.unit.common.test_table.TestElementIdentifiers) ... ok test_identifier_search_single_list_partial_match (tests.unit.common.test_table.TestElementIdentifiers) ... ok test_identifier_search_with_bad_ids (tests.unit.common.test_table.TestElementIdentifiers) ... ok test_identifier_search_with_element_identifier (tests.unit.common.test_table.TestElementIdentifiers) ... ok test_roundtrip (tests.unit.common.test_table.TestEmptyDynamicTableRoundTrip) Test whether the container read from a written file is the same as the original file. ... ok test_roundtrip_export (tests.unit.common.test_table.TestEmptyDynamicTableRoundTrip) Test whether the container read from a written and then exported file is the same as the original file. ... ok test_list (tests.unit.common.test_table.TestIndexing) ... ok test_list_no_df (tests.unit.common.test_table.TestIndexing) ... ok test_single_item (tests.unit.common.test_table.TestIndexing) ... ok test_single_item_no_df (tests.unit.common.test_table.TestIndexing) ... ok test_slice (tests.unit.common.test_table.TestIndexing) ... ok test_slice_no_df (tests.unit.common.test_table.TestIndexing) ... ok test_init_data (tests.unit.common.test_table.TestVectorIndex) ... ok test_init_empty (tests.unit.common.test_table.TestVectorIndex) ... ok test_add_row (tests.unit.common.test_table.TestVocabData) ... ok test_add_row_index (tests.unit.common.test_table.TestVocabData) ... ok test_get (tests.unit.common.test_table.TestVocabData) ... ok test_get_2d (tests.unit.common.test_table.TestVocabData) ... ok test_get_2d_w_2d (tests.unit.common.test_table.TestVocabData) ... ok test_get_list (tests.unit.common.test_table.TestVocabData) ... ok test_get_list_indices (tests.unit.common.test_table.TestVocabData) ... ok test_get_list_join (tests.unit.common.test_table.TestVocabData) ... ok test_init (tests.unit.common.test_table.TestVocabData) ... ok test_both_value_and_default_value_set (tests.unit.spec_tests.test_attribute_spec.AttributeSpecTests) ... ok test_colliding_shape_and_dims (tests.unit.spec_tests.test_attribute_spec.AttributeSpecTests) ... ok test_constructor (tests.unit.spec_tests.test_attribute_spec.AttributeSpecTests) ... ok test_default_value (tests.unit.spec_tests.test_attribute_spec.AttributeSpecTests) ... ok test_dims_without_shape (tests.unit.spec_tests.test_attribute_spec.AttributeSpecTests) ... ok test_invalid_dtype (tests.unit.spec_tests.test_attribute_spec.AttributeSpecTests) ... ok test_shape (tests.unit.spec_tests.test_attribute_spec.AttributeSpecTests) ... ok test_constructor (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests) ... ok test_constructor_datatype (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests) ... ok test_constructor_default_value (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests) ... ok test_constructor_invalid_table (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests) ... ok test_constructor_invalidate_dtype (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests) ... ok test_constructor_ref_spec (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests) ... ok test_constructor_shape (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests) ... ok test_constructor_table (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests) ... ok test_datatype_extension (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests) ... ok test_datatype_extension_groupspec (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests) Test to make sure DatasetSpec catches when a GroupSpec used as data_type_inc ... ok test_datatype_table_extension (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests) ... ok test_datatype_table_extension_diff_format (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests) ... ok test_datatype_table_extension_higher_precision (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests) ... ok test_datatype_table_extension_lower_precision (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests) ... ok test_name_with_compatible_quantity (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests) ... ok test_name_with_incompatible_quantity (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests) ... ok test_check_dtype_bad (tests.unit.spec_tests.test_dtype_spec.DtypeSpecHelper) ... ok test_check_dtype_ok (tests.unit.spec_tests.test_dtype_spec.DtypeSpecHelper) ... ok test_check_dtype_ref (tests.unit.spec_tests.test_dtype_spec.DtypeSpecHelper) ... ok test_recommended_dtypes (tests.unit.spec_tests.test_dtype_spec.DtypeSpecHelper) ... ok test_simplify_cpd_type (tests.unit.spec_tests.test_dtype_spec.DtypeSpecHelper) ... ok test_valid_primary_dtypes (tests.unit.spec_tests.test_dtype_spec.DtypeSpecHelper) ... ok test_build_spec (tests.unit.spec_tests.test_dtype_spec.DtypeSpecTests) ... ok test_constructor (tests.unit.spec_tests.test_dtype_spec.DtypeSpecTests) ... ok test_invalid_dtype (tests.unit.spec_tests.test_dtype_spec.DtypeSpecTests) ... ok test_invalid_refspec_dict (tests.unit.spec_tests.test_dtype_spec.DtypeSpecTests) Test missing or bad target key for RefSpec. ... ok test_is_ref (tests.unit.spec_tests.test_dtype_spec.DtypeSpecTests) ... ok test_refspec_dtype (tests.unit.spec_tests.test_dtype_spec.DtypeSpecTests) ... ok test_add_attribute (tests.unit.spec_tests.test_group_spec.GroupSpecTests) ... ok test_constructor (tests.unit.spec_tests.test_group_spec.GroupSpecTests) ... ok test_constructor_datatype (tests.unit.spec_tests.test_group_spec.GroupSpecTests) ... ok test_path (tests.unit.spec_tests.test_group_spec.GroupSpecTests) ... ok test_path_complicated (tests.unit.spec_tests.test_group_spec.GroupSpecTests) ... ok test_path_no_name (tests.unit.spec_tests.test_group_spec.GroupSpecTests) ... ok test_set_dataset (tests.unit.spec_tests.test_group_spec.GroupSpecTests) ... ok test_set_group (tests.unit.spec_tests.test_group_spec.GroupSpecTests) ... ok test_type_extension (tests.unit.spec_tests.test_group_spec.GroupSpecTests) ... ok test_update_attribute_spec (tests.unit.spec_tests.test_group_spec.GroupSpecTests) ... ok test_constructor (tests.unit.spec_tests.test_link_spec.LinkSpecTests) ... ok test_constructor_defaults (tests.unit.spec_tests.test_link_spec.LinkSpecTests) ... ok test_constructor_target_spec_def (tests.unit.spec_tests.test_link_spec.LinkSpecTests) ... ok test_constructor_target_spec_inc (tests.unit.spec_tests.test_link_spec.LinkSpecTests) ... ok test_required_is_many (tests.unit.spec_tests.test_link_spec.LinkSpecTests) ... ok test_catch_dup_name (tests.unit.spec_tests.test_load_namespace.TestCatchDupNS) ... ok test_catch_dup_name_same_version (tests.unit.spec_tests.test_load_namespace.TestCatchDupNS) ... ok test_inherited_attributes (tests.unit.spec_tests.test_load_namespace.TestSpecLoad) ... ok test_inherited_attributes_not_resolved (tests.unit.spec_tests.test_load_namespace.TestSpecLoad) ... ok test_build_namespace_missing_version (tests.unit.spec_tests.test_load_namespace.TestSpecLoadEdgeCase) Test that building/creating a SpecNamespace without a version works but raises a warning. ... ok test_get_namespace_missing_version (tests.unit.spec_tests.test_load_namespace.TestSpecLoadEdgeCase) Test that SpecNamespace.version returns the constant for a missing version if version gets removed. ... ok test_load_namespace_none_version (tests.unit.spec_tests.test_load_namespace.TestSpecLoadEdgeCase) Test that reading a namespace file without a version works but raises a warning. ... ok test_load_namespace_unversioned_version (tests.unit.spec_tests.test_load_namespace.TestSpecLoadEdgeCase) Test that reading a namespace file with version=unversioned string works but raises a warning. ... ok test_missing_version_string (tests.unit.spec_tests.test_load_namespace.TestSpecLoadEdgeCase) Test that the constant variable representing a missing version has not changed. ... ok test_constructor (tests.unit.spec_tests.test_ref_spec.RefSpecTests) ... ok test_isregion (tests.unit.spec_tests.test_ref_spec.RefSpecTests) ... ok test_wrong_reference_type (tests.unit.spec_tests.test_ref_spec.RefSpecTests) ... ok test_copy_spec_catalog (tests.unit.spec_tests.test_spec_catalog.SpecCatalogTest) ... ok test_deepcopy_spec_catalog (tests.unit.spec_tests.test_spec_catalog.SpecCatalogTest) ... ok test_get_full_hierarchy (tests.unit.spec_tests.test_spec_catalog.SpecCatalogTest) BaseContainer--+-->AContainer--->ADContainer ... ok test_get_spec_source_file (tests.unit.spec_tests.test_spec_catalog.SpecCatalogTest) ... ok test_hierarchy (tests.unit.spec_tests.test_spec_catalog.SpecCatalogTest) ... ok test_register_spec (tests.unit.spec_tests.test_spec_catalog.SpecCatalogTest) ... ok test_subtypes (tests.unit.spec_tests.test_spec_catalog.SpecCatalogTest) -BaseContainer--+-->AContainer--->ADContainer ... ok test_subtypes_norecursion (tests.unit.spec_tests.test_spec_catalog.SpecCatalogTest) -BaseContainer--+-->AContainer--->ADContainer ... ok test_subtypes_unknown_type (tests.unit.spec_tests.test_spec_catalog.SpecCatalogTest) ... ok test_export (tests.unit.spec_tests.test_spec_write.TestExportSpec) Test that export_spec writes the correct files. ... ok test_missing_data_types (tests.unit.spec_tests.test_spec_write.TestExportSpec) Test that calling export_spec on a namespace builder without data types raises a warning. ... ok test_export_namespace (tests.unit.spec_tests.test_spec_write.TestNamespaceBuilder) ... ok test_get_source_description (tests.unit.spec_tests.test_spec_write.TestNamespaceBuilder) ... ok test_get_source_files (tests.unit.spec_tests.test_spec_write.TestNamespaceBuilder) ... ok test_missing_version (tests.unit.spec_tests.test_spec_write.TestNamespaceBuilder) Test that creating a namespace builder without a version raises an error. ... ok test_read_namespace (tests.unit.spec_tests.test_spec_write.TestNamespaceBuilder) ... ok test_get_name (tests.unit.spec_tests.test_spec_write.TestYAMLSpecWrite) ... ok test_init (tests.unit.spec_tests.test_spec_write.TestYAMLSpecWrite) ... ok test_write_namespace (tests.unit.spec_tests.test_spec_write.TestYAMLSpecWrite) ... ok test_bad_field_conf_key (tests.unit.test_container.TestAbstractContainerFieldsConf) ... ok test_bad_field_missing_name (tests.unit.test_container.TestAbstractContainerFieldsConf) ... ok test_bad_fields_type (tests.unit.test_container.TestAbstractContainerFieldsConf) ... ok test_empty_fields (tests.unit.test_container.TestAbstractContainerFieldsConf) ... ok test_inheritance (tests.unit.test_container.TestAbstractContainerFieldsConf) ... ok test_inheritance_override (tests.unit.test_container.TestAbstractContainerFieldsConf) ... ok test_mult_inheritance_base_container (tests.unit.test_container.TestAbstractContainerFieldsConf) ... ok test_mult_inheritance_base_mixin (tests.unit.test_container.TestAbstractContainerFieldsConf) ... ok test_named_fields (tests.unit.test_container.TestAbstractContainerFieldsConf) ... ok test_not_settable (tests.unit.test_container.TestAbstractContainerFieldsConf) Test that __fields__ related attributes are set correctly. ... ok test_with_doc (tests.unit.test_container.TestAbstractContainerFieldsConf) Test that __fields__ related attributes are set correctly. ... ok test_fields (tests.unit.test_container.TestChangeFieldsName) ... ok test_fields_inheritance (tests.unit.test_container.TestChangeFieldsName) ... ok test_add_child (tests.unit.test_container.TestContainer) Test that add child creates deprecation warning and also properly sets child's parent and modified ... ok test_constructor (tests.unit.test_container.TestContainer) Test that constructor properly sets parent and both child and parent have an object_id ... ok test_constructor_object_id_none (tests.unit.test_container.TestContainer) Test that setting object_id to None in __new__ is OK and the object ID is set on get ... ok test_generate_new_id_child (tests.unit.test_container.TestContainer) Test that generate_new_id sets a new ID on the container and not its parent and sets modified on both. ... ok test_generate_new_id_parent (tests.unit.test_container.TestContainer) Test that generate_new_id sets a new ID on the container and its children and sets modified on all. ... ok test_generate_new_id_parent_no_recurse (tests.unit.test_container.TestContainer) Test that generate_new_id(recurse=False) sets a new ID on the container and not its children. ... ok test_reassign_container_source (tests.unit.test_container.TestContainer) Test that reassign container source throws error ... ok test_remove_child (tests.unit.test_container.TestContainer) Test that removing a child removes only the child. ... ok test_remove_child_nonchild (tests.unit.test_container.TestContainer) Test that removing a non-Container child raises an error. ... ok test_remove_child_noncontainer (tests.unit.test_container.TestContainer) Test that removing a non-Container child raises an error. ... ok test_repr (tests.unit.test_container.TestContainer) ... ok test_set_modified_parent (tests.unit.test_container.TestContainer) Test that set modified properly sets parent modified ... ok test_set_parent (tests.unit.test_container.TestContainer) Test that parent setter properly sets parent ... ok test_set_parent_exists (tests.unit.test_container.TestContainer) Test that setting a parent a second time does nothing ... ok test_set_parent_overwrite (tests.unit.test_container.TestContainer) Test that parent setter properly blocks overwriting ... ok test_set_parent_overwrite_proxy (tests.unit.test_container.TestContainer) Test that parent setter properly blocks overwriting with proxy/object ... ok test_slash_restriction (tests.unit.test_container.TestContainer) ... ok test_type_hierarchy (tests.unit.test_container.TestContainer) ... ok test_child (tests.unit.test_container.TestContainerFieldsConf) ... ok test_required_name (tests.unit.test_container.TestContainerFieldsConf) ... ok test_bool_false (tests.unit.test_container.TestData) Test that __bool__ method works correctly on empty data ... ok test_bool_true (tests.unit.test_container.TestData) Test that __bool__ method works correctly on data with len ... ok test_constructor_scalar (tests.unit.test_container.TestData) Test that constructor works correctly on scalar data ... ok test_shape_list (tests.unit.test_container.TestData) Test that shape works for np.array ... ok test_shape_nparray (tests.unit.test_container.TestData) Test that shape works for np.array ... ok test_dataset_shape (tests.unit.test_io_hdf5.TestHDF5Writer) ... ok test_read_builder (tests.unit.test_io_hdf5.TestHDF5Writer) ... ok test_write_attribute_reference_builder (tests.unit.test_io_hdf5.TestHDF5Writer) ... ok test_write_attribute_reference_container (tests.unit.test_io_hdf5.TestHDF5Writer) ... ok test_write_builder (tests.unit.test_io_hdf5.TestHDF5Writer) ... ok test_write_context_manager (tests.unit.test_io_hdf5.TestHDF5Writer) ... ok test_link (tests.unit.test_io_hdf5_h5tools.H5DataIOValid) Test that wrapping of linked data within H5DataIO ... ok test_read_valid (tests.unit.test_io_hdf5_h5tools.H5DataIOValid) Test that h5py.H5Dataset.id.valid works as expected ... ok test_valid (tests.unit.test_io_hdf5_h5tools.H5DataIOValid) ... ok test__chunked_iter_fill (tests.unit.test_io_hdf5_h5tools.H5IOTest) Matrix test of HDF5IO.__chunked_iter_fill__ using a DataChunkIterator with different parameters ... ok test_copy_h5py_dataset_h5dataio_input (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_copy_h5py_dataset_input (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_dci_h5dataset (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_dci_h5dataset_scalar (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_dci_h5dataset_sparse_matched (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_dci_h5dataset_sparse_unmatched (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_error_on_unsupported_compression_filter (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_h5dataio_array_conversion_datachunkiterator (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_h5dataio_array_conversion_list (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_h5dataio_array_conversion_numpy (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_link_h5py_dataset_h5dataio_input (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_link_h5py_dataset_input (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_list_fill_empty (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_list_fill_empty_no_dtype (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_pass_through_of_recommended_chunks (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_value_error_on_incompatible_compression_opts (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_warning_on_linking_of_regular_array (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_warning_on_non_gzip_compression (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_warning_on_setting_io_options_on_h5dataset_input (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_write_dataset_data_chunk_iterator (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_write_dataset_data_chunk_iterator_with_compression (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_write_dataset_iterable (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_write_dataset_iterable_multidimensional_array (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_write_dataset_iterable_multidimensional_array_compression (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_write_dataset_list (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_write_dataset_list_chunked (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_write_dataset_list_compress_available_int_filters (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_write_dataset_list_compress_gzip (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_write_dataset_list_compress_lzf (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_write_dataset_list_compress_szip (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_write_dataset_list_disable_default_compress (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_write_dataset_list_enable_default_compress (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_write_dataset_list_fillvalue (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_write_dataset_scalar (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_write_dataset_string (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_write_multi_dci_conc (tests.unit.test_io_hdf5_h5tools.H5IOTest) Test writing multiple DataChunkIterators, concurrently ... ok test_write_multi_dci_oaat (tests.unit.test_io_hdf5_h5tools.H5IOTest) Test writing multiple DataChunkIterators, one at a time ... ok test_write_table (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_write_table_nested (tests.unit.test_io_hdf5_h5tools.H5IOTest) ... ok test_init_file_exists_ok (tests.unit.test_io_hdf5_h5tools.HDF5IOInitFileExistsTest) ... ok test_init_wminus_file_exists (tests.unit.test_io_hdf5_h5tools.HDF5IOInitFileExistsTest) ... ok test_init_x_file_exists (tests.unit.test_io_hdf5_h5tools.HDF5IOInitFileExistsTest) ... ok test_init_no_file_ok (tests.unit.test_io_hdf5_h5tools.HDF5IOInitNoFileTest) ... ok test_init_no_file_r (tests.unit.test_io_hdf5_h5tools.HDF5IOInitNoFileTest) ... ok test_init_no_file_rplus (tests.unit.test_io_hdf5_h5tools.HDF5IOInitNoFileTest) ... ok test_copy_file_with_external_links (tests.unit.test_io_hdf5_h5tools.HDF5IOMultiFileTest) ... ok test_read_closed (tests.unit.test_io_hdf5_h5tools.HDF5IOReadBuilderClosed) ... ok test_read_file_ok (tests.unit.test_io_hdf5_h5tools.HDF5IOReadData) ... ok test_read_file_w (tests.unit.test_io_hdf5_h5tools.HDF5IOReadData) ... ok test_read_no_data_a (tests.unit.test_io_hdf5_h5tools.HDF5IOReadNoDataTest) ... ok test_read_no_data_r (tests.unit.test_io_hdf5_h5tools.HDF5IOReadNoDataTest) ... ok test_read_no_data_rplus (tests.unit.test_io_hdf5_h5tools.HDF5IOReadNoDataTest) ... ok test_write_a (tests.unit.test_io_hdf5_h5tools.HDF5IOWriteFileExists) ... ok test_write_r (tests.unit.test_io_hdf5_h5tools.HDF5IOWriteFileExists) ... ok test_write_rplus (tests.unit.test_io_hdf5_h5tools.HDF5IOWriteFileExists) ... ok test_write_w (tests.unit.test_io_hdf5_h5tools.HDF5IOWriteFileExists) ... ok test_write_no_file_a_ok (tests.unit.test_io_hdf5_h5tools.HDF5IOWriteNoFile) ... ok test_write_no_file_w_ok (tests.unit.test_io_hdf5_h5tools.HDF5IOWriteNoFile) ... ok test_write_no_file_wminus_ok (tests.unit.test_io_hdf5_h5tools.HDF5IOWriteNoFile) ... ok test_write_no_file_x_ok (tests.unit.test_io_hdf5_h5tools.HDF5IOWriteNoFile) ... ok test_external_link_to_external_link (tests.unit.test_io_hdf5_h5tools.TestBuildWriteLinkToLink) Test writing a file with external links to external links. ... ok test_external_link_to_soft_link (tests.unit.test_io_hdf5_h5tools.TestBuildWriteLinkToLink) Test writing a file with external links to external links. ... ok test_cache_spec (tests.unit.test_io_hdf5_h5tools.TestCacheSpec) ... ok test_close_file_with_links (tests.unit.test_io_hdf5_h5tools.TestCloseLinks) ... ok test_double_close_file_with_links (tests.unit.test_io_hdf5_h5tools.TestCloseLinks) ... ok test_roundtrip (tests.unit.test_io_hdf5_h5tools.TestCpdDatasetRefs) ... ok test_roundtrip (tests.unit.test_io_hdf5_h5tools.TestDatasetRefs) ... ok test_append_data (tests.unit.test_io_hdf5_h5tools.TestExport) Test that exporting a written container after adding groups, links, and references to it works. ... ok test_append_external_link_copy_data (tests.unit.test_io_hdf5_h5tools.TestExport) Test that exporting a written container after adding a link with link_data=False copies the data. ... ok test_append_external_link_data (tests.unit.test_io_hdf5_h5tools.TestExport) Test that exporting a written container after adding a link with link_data=True creates external links. ... ok test_attr_reference (tests.unit.test_io_hdf5_h5tools.TestExport) Test that exporting a written file with attribute references maintains the references. ... ok test_basic (tests.unit.test_io_hdf5_h5tools.TestExport) Test that exporting a written container works. ... ok test_basic_container (tests.unit.test_io_hdf5_h5tools.TestExport) Test that exporting a written container, passing in the container arg, works. ... ok test_cache_spec (tests.unit.test_io_hdf5_h5tools.TestExport) Test that exporting with cache_spec works. ... ok test_container_part (tests.unit.test_io_hdf5_h5tools.TestExport) Test that exporting a part of a written container raises an error. ... ok test_container_unknown (tests.unit.test_io_hdf5_h5tools.TestExport) Test that exporting a container that did not come from the src_io object raises an error. ... ok test_export_cpd_dset_refs (tests.unit.test_io_hdf5_h5tools.TestExport) Test that exporting a written container with a compound dataset with references works. ... ok test_export_dset_refs (tests.unit.test_io_hdf5_h5tools.TestExport) Test that exporting a written container with a dataset of references works. ... ok test_export_io (tests.unit.test_io_hdf5_h5tools.TestExport) Test that exporting a written container using HDF5IO.export_io works. ... ok test_external_link_dataset (tests.unit.test_io_hdf5_h5tools.TestExport) Test that exporting a written file with external linked datasets maintains the links. ... ok test_external_link_group (tests.unit.test_io_hdf5_h5tools.TestExport) Test that exporting a written file with external linked groups maintains the links. ... ok test_external_link_link (tests.unit.test_io_hdf5_h5tools.TestExport) Test that exporting a written file with external links to external links maintains the links. ... ok test_non_HDF5_src_link_data_true (tests.unit.test_io_hdf5_h5tools.TestExport) Test that exporting with a src_io without a manager raises an error. ... ok test_non_manager_container (tests.unit.test_io_hdf5_h5tools.TestExport) Test that exporting with a src_io without a manager raises an error. ... ok test_pop_data (tests.unit.test_io_hdf5_h5tools.TestExport) Test that exporting a written container after removing an element from it works. ... ok test_pop_linked_group (tests.unit.test_io_hdf5_h5tools.TestExport) Test that exporting a written container after removing a linked element from it works. ... ok test_soft_link_dataset (tests.unit.test_io_hdf5_h5tools.TestExport) Test that exporting a written file with soft linked datasets keeps links within the file. ... ok test_soft_link_group (tests.unit.test_io_hdf5_h5tools.TestExport) Test that exporting a written file with soft linked groups keeps links within the file. ... ok test_wrong_mode (tests.unit.test_io_hdf5_h5tools.TestExport) Test that exporting with a src_io without a manager raises an error. ... ok test_constructor (tests.unit.test_io_hdf5_h5tools.TestHDF5IO) ... ok test_pathlib_path (tests.unit.test_io_hdf5_h5tools.TestHDF5IO) ... ok test_set_file_mismatch (tests.unit.test_io_hdf5_h5tools.TestHDF5IO) ... ok test_link_data_false (tests.unit.test_io_hdf5_h5tools.TestLinkData) Test that the argument link_data=False for write_builder copies the data. ... ok test_link_data_true (tests.unit.test_io_hdf5_h5tools.TestLinkData) Test that the argument link_data=True for write_builder creates an external link. ... ok test_load_namespaces_file_no_path (tests.unit.test_io_hdf5_h5tools.TestLoadNamespaces) Test that loading namespaces from an h5py.File not backed by a file on disk is OK and does not close the file. ... ok test_load_namespaces_file_path_matched (tests.unit.test_io_hdf5_h5tools.TestLoadNamespaces) Test that loading namespaces given an h5py.File and path is OK and does not close the file. ... ok test_load_namespaces_file_path_mismatched (tests.unit.test_io_hdf5_h5tools.TestLoadNamespaces) Test that loading namespaces given an h5py.File and path that are mismatched raises an error. ... ok test_load_namespaces_no_path_no_file (tests.unit.test_io_hdf5_h5tools.TestLoadNamespaces) Test that loading namespaces without a path or file raises an error. ... ok test_load_namespaces_none_version (tests.unit.test_io_hdf5_h5tools.TestLoadNamespaces) Test that reading a file with a cached namespace and None version works but raises a warning. ... ok test_load_namespaces_path (tests.unit.test_io_hdf5_h5tools.TestLoadNamespaces) Test that loading namespaces given a path is OK and returns the correct dictionary. ... ok test_load_namespaces_unversioned (tests.unit.test_io_hdf5_h5tools.TestLoadNamespaces) Test that reading a file with a cached, unversioned version works but raises a warning. ... ok test_load_namespaces_with_pathlib_path (tests.unit.test_io_hdf5_h5tools.TestLoadNamespaces) Test that loading a namespace using a valid pathlib Path is OK and returns the correct dictionary. ... ok test_double_append_new_manager (tests.unit.test_io_hdf5_h5tools.TestMultiWrite) Test writing to a container in append mode twice using a new manager without changing the container. ... skipped 'Functionality not yet supported' test_double_append_same_manager (tests.unit.test_io_hdf5_h5tools.TestMultiWrite) Test writing to a container in append mode twice using the same manager without changing the container. ... skipped 'Functionality not yet supported' test_double_write_new_manager (tests.unit.test_io_hdf5_h5tools.TestMultiWrite) Test writing to a container in write mode twice using a new manager without changing the container. ... ok test_double_write_same_manager (tests.unit.test_io_hdf5_h5tools.TestMultiWrite) Test writing to a container in write mode twice using the same manager without changing the container. ... ok test_write_add_append_bucket (tests.unit.test_io_hdf5_h5tools.TestMultiWrite) Test appending a container to a file. ... ok test_write_add_append_double_write (tests.unit.test_io_hdf5_h5tools.TestMultiWrite) Test using the same IO object to append a container to a file twice. ... ok test_write_add_write (tests.unit.test_io_hdf5_h5tools.TestMultiWrite) Test writing a container, adding to the in-memory container, then overwriting the same file. ... ok test_no_cache_spec (tests.unit.test_io_hdf5_h5tools.TestNoCacheSpec) ... ok test_broken_link (tests.unit.test_io_hdf5_h5tools.TestReadLink) Test that opening a file with a broken link raises a warning but is still readable. ... ok test_broken_linked_data (tests.unit.test_io_hdf5_h5tools.TestReadLink) Test that opening a file with a broken link raises a warning but is still readable. ... ok test_link_to_link (tests.unit.test_io_hdf5_h5tools.TestReadLink) Test that link to link gets written and read properly ... ok test_set_link_loc (tests.unit.test_io_hdf5_h5tools.TestReadLink) Test that Builder location is set when it is read as a link ... ok test_roundtrip_basic (tests.unit.test_io_hdf5_h5tools.TestRoundTrip) ... ok test_roundtrip_empty_dataset (tests.unit.test_io_hdf5_h5tools.TestRoundTrip) ... ok test_roundtrip_empty_group (tests.unit.test_io_hdf5_h5tools.TestRoundTrip) ... ok test_roundtrip_pathlib_path (tests.unit.test_io_hdf5_h5tools.TestRoundTrip) ... ok test_set_written_on_write (tests.unit.test_io_hdf5_h5tools.TestWritten) Test that write_builder changes the written flag of the builder and its children from False to True. ... ok test_create_multiple_types (tests.unit.test_multicontainerinterface.TestBadClsConf) Test that an error is raised if __clsconf__ specifies 'create' key with multiple types. ... ok test_create_multiple_types_multi (tests.unit.test_multicontainerinterface.TestBadClsConf) Test that an error is raised if one item of a __clsconf__ list specifies 'create' key with multiple types. ... ok test_missing_add (tests.unit.test_multicontainerinterface.TestBadClsConf) Test that an error is raised if __clsconf__ is missing the add key. ... ok test_missing_add_multi (tests.unit.test_multicontainerinterface.TestBadClsConf) Test that an error is raised if one item of a __clsconf__ list is missing the add key. ... ok test_missing_attr (tests.unit.test_multicontainerinterface.TestBadClsConf) Test that an error is raised if __clsconf__ is missing the attr key. ... ok test_missing_attr_multi (tests.unit.test_multicontainerinterface.TestBadClsConf) Test that an error is raised if one item of a __clsconf__ list is missing the attr key. ... ok test_missing_type (tests.unit.test_multicontainerinterface.TestBadClsConf) Test that an error is raised if __clsconf__ is missing the type key. ... ok test_missing_type_multi (tests.unit.test_multicontainerinterface.TestBadClsConf) Test that an error is raised if one item of a __clsconf__ list is missing the type key. ... ok test_wrong_type (tests.unit.test_multicontainerinterface.TestBadClsConf) Test that an error is raised if __clsconf__ is missing the add key. ... ok test_add_dict (tests.unit.test_multicontainerinterface.TestBasic) Test that adding a dict to the attribute dict correctly adds the input dict values. ... ok test_add_docval (tests.unit.test_multicontainerinterface.TestBasic) Test that the docval for the add method is set correctly. ... ok test_add_list (tests.unit.test_multicontainerinterface.TestBasic) Test that adding a list to the attribute dict correctly adds the items. ... ok test_add_single (tests.unit.test_multicontainerinterface.TestBasic) Test that adding a container to the attribute dict correctly adds the container. ... ok test_add_single_dup (tests.unit.test_multicontainerinterface.TestBasic) Test that adding a container to the attribute dict correctly adds the container. ... ok test_add_single_not_parent (tests.unit.test_multicontainerinterface.TestBasic) Test that adding a container with a parent to the attribute dict correctly adds the container. ... ok test_attr_getter (tests.unit.test_multicontainerinterface.TestBasic) Test that the getter for the attribute dict returns a LabelledDict. ... ok test_attr_property (tests.unit.test_multicontainerinterface.TestBasic) Test that a property is created for the attribute. ... ok test_attr_setter_none (tests.unit.test_multicontainerinterface.TestBasic) Test that setting the attribute dict to None does not alter the dict. ... ok test_create_docval (tests.unit.test_multicontainerinterface.TestBasic) Test that the docval for the create method is set correctly. ... ok test_getitem (tests.unit.test_multicontainerinterface.TestBasic) Test that getitem works. ... ok test_getitem_docval (tests.unit.test_multicontainerinterface.TestBasic) Test that the docval for __getitem__ is set correctly. ... ok test_getitem_empty (tests.unit.test_multicontainerinterface.TestBasic) Test that an error is raised if the attribute dict is empty and no name is given to getitem. ... ok test_getitem_multiconf (tests.unit.test_multicontainerinterface.TestBasic) Test that classes with multiple attribute configurations cannot use getitem. ... ok test_getitem_multiple (tests.unit.test_multicontainerinterface.TestBasic) Test that an error is raised if the attribute dict has multiple values and no name is given to getitem. ... ok test_getitem_not_found (tests.unit.test_multicontainerinterface.TestBasic) Test that a KeyError is raised if the key is not found using getitem. ... ok test_getitem_single_none (tests.unit.test_multicontainerinterface.TestBasic) Test that getitem works wwhen there is a single item and no name is given to getitem. ... ok test_getter_docval (tests.unit.test_multicontainerinterface.TestBasic) Test that the docval for the get method is set correctly. ... ok test_getter_empty (tests.unit.test_multicontainerinterface.TestBasic) Test that calling the getter with no args and no items in the attribute dict raises an error. ... ok test_getter_name (tests.unit.test_multicontainerinterface.TestBasic) Test that calling the getter with a correct key works. ... ok test_getter_name_not_found (tests.unit.test_multicontainerinterface.TestBasic) Test that calling the getter with a key not in the attribute dict raises a KeyError. ... ok test_getter_none (tests.unit.test_multicontainerinterface.TestBasic) Test that calling the getter with no args and one item in the attribute returns the item. ... ok test_getter_none_multiple (tests.unit.test_multicontainerinterface.TestBasic) Test that calling the getter with no args and multiple items in the attribute dict raises an error. ... ok test_init_custom_name (tests.unit.test_multicontainerinterface.TestBasic) Test that initializing the MCI with a custom name works. ... ok test_init_docval (tests.unit.test_multicontainerinterface.TestBasic) Test that the docval for the __init__ method is set correctly. ... ok test_init_empty (tests.unit.test_multicontainerinterface.TestBasic) Test that initializing the MCI with no arguments initializes the attribute dict empty. ... ok test_init_multi (tests.unit.test_multicontainerinterface.TestBasic) Test that initializing the MCI with no arguments initializes the attribute dict empty. ... ok test_remove_child (tests.unit.test_multicontainerinterface.TestBasic) Test that removing a child container from the attribute dict resets the parent to None. ... ok test_remove_non_child (tests.unit.test_multicontainerinterface.TestBasic) Test that removing a non-child container from the attribute dict resets the parent to None. ... ok test_init_no_cls_conf (tests.unit.test_multicontainerinterface.TestNoClsConf) Test that an MCI class without a __clsconf__ can be declared but __init__ raises an error. ... ok test_init_superclass_no_cls_conf (tests.unit.test_multicontainerinterface.TestNoClsConf) Test that a subclass of an MCI class without a __clsconf__ can be initialized. ... ok test_override_init (tests.unit.test_multicontainerinterface.TestOverrideInit) Test that overriding __init__ works. ... ok test_override_property (tests.unit.test_multicontainerinterface.TestOverrideInit) Test that overriding the attribute property works. ... ok test___eq__ (tests.unit.test_query.LinspaceQueryTest) Test wrapper equals magic method ... ok test___ge__ (tests.unit.test_query.LinspaceQueryTest) Test wrapper greater than or equal magic method ... ok test___getitem__ (tests.unit.test_query.LinspaceQueryTest) Test wrapper getitem using slice ... ok test___getitem__query (tests.unit.test_query.LinspaceQueryTest) Test wrapper getitem using query ... ok test___gt__ (tests.unit.test_query.LinspaceQueryTest) Test wrapper greater than magic method ... ok test___le__ (tests.unit.test_query.LinspaceQueryTest) Test wrapper less than or equal magic method ... ok test___lt__ (tests.unit.test_query.LinspaceQueryTest) Test wrapper less than magic method ... ok test___ne__ (tests.unit.test_query.LinspaceQueryTest) Test wrapper not equal magic method ... ok test_get_dataset (tests.unit.test_query.LinspaceQueryTest) ... ok test___eq__ (tests.unit.test_query.SortedQueryTest) Test wrapper equals magic method ... ok test___ge__ (tests.unit.test_query.SortedQueryTest) Test wrapper greater than or equal magic method ... ok test___getitem__ (tests.unit.test_query.SortedQueryTest) Test wrapper getitem using slice ... ok test___getitem__query (tests.unit.test_query.SortedQueryTest) Test wrapper getitem using query ... ok test___gt__ (tests.unit.test_query.SortedQueryTest) Test wrapper greater than magic method ... ok test___le__ (tests.unit.test_query.SortedQueryTest) Test wrapper less than or equal magic method ... ok test___lt__ (tests.unit.test_query.SortedQueryTest) Test wrapper less than magic method ... ok test___ne__ (tests.unit.test_query.SortedQueryTest) Test wrapper not equal magic method ... ok test_get_dataset (tests.unit.test_query.SortedQueryTest) ... ok test_add_row_getitem (tests.unit.test_table.TestRow) ... ok test_init (tests.unit.test_table.TestRow) ... ok test_row_no_table (tests.unit.test_table.TestRow) ... ok test_table_init (tests.unit.test_table.TestRow) ... ok test_todict (tests.unit.test_table.TestRow) ... ok test_add_row_getitem (tests.unit.test_table.TestTable) ... ok test_from_dataframe (tests.unit.test_table.TestTable) ... ok test_init (tests.unit.test_table.TestTable) ... ok test_to_dataframe (tests.unit.test_table.TestTable) ... ok test_datachunk_astype (tests.unit.utils_test.test_core_DataChunk.DataChunkTests) ... ok test_datachunk_copy (tests.unit.utils_test.test_core_DataChunk.DataChunkTests) ... ok test_datachunk_deepcopy (tests.unit.utils_test.test_core_DataChunk.DataChunkTests) ... ok test_custom_iter_first_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) ... ok test_custom_iter_last_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) ... ok test_custom_iter_middle_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) ... ok test_custom_iter_mismatched_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) ... ok test_dtype (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) ... ok test_list_none (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) Test that DataChunkIterator has no dtype or chunks when given a list of None. ... ok test_list_none_dtype (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) Test that DataChunkIterator has the passed-in dtype and no chunks when given a list of None. ... ok test_list_numpy_scalar (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) ... ok test_list_scalar (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) ... ok test_maxshape (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) ... ok test_multidimensional_list_first_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) Test DataChunkIterator with multidimensional list data, no buffering, and iterating on the first dimension. ... ok test_multidimensional_list_last_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) Test DataChunkIterator with multidimensional list data, no buffering, and iterating on the last dimension. ... ok test_multidimensional_list_middle_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) Test DataChunkIterator with multidimensional list data, no buffering, and iterating on a middle dimension. ... ok test_none_iter (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) Test that DataChunkIterator __init__ sets defaults correctly and all chunks and recommended shapes are None. ... ok test_numpy_iter_buffered_first_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) Test DataChunkIterator with numpy data, buffering, and iterating on the first dimension. ... ok test_numpy_iter_buffered_last_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) Test DataChunkIterator with numpy data, buffering, and iterating on the last dimension. ... ok test_numpy_iter_buffered_middle_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) Test DataChunkIterator with numpy data, buffering, and iterating on a middle dimension. ... ok test_numpy_iter_unbuffered_first_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) Test DataChunkIterator with numpy data, no buffering, and iterating on the first dimension. ... ok test_numpy_iter_unbuffered_last_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) Test DataChunkIterator with numpy data, no buffering, and iterating on the last dimension. ... ok test_numpy_iter_unbuffered_middle_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) Test DataChunkIterator with numpy data, no buffering, and iterating on a middle dimension. ... ok test_numpy_iter_unmatched_buffer_size (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) ... ok test_set_maxshape (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) ... ok test_sparse_data_buffer_aligned (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) ... ok test_sparse_data_buffer_notaligned (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) ... ok test_standard_iterator_unbuffered (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) ... ok test_standard_iterator_unmatched_buffersized (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) ... ok test_start_with_none (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests) ... ok test_astype (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkTests) ... ok test_dtype (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkTests) ... ok test_len_operator_no_data (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkTests) ... ok test_len_operator_with_data (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkTests) ... ok test_copy (tests.unit.utils_test.test_core_DataIO.DataIOTests) ... ok test_dataio_slice_delegation (tests.unit.utils_test.test_core_DataIO.DataIOTests) ... ok test_deepcopy (tests.unit.utils_test.test_core_DataIO.DataIOTests) ... ok test_set_dataio (tests.unit.utils_test.test_core_DataIO.DataIOTests) Test that Data.set_dataio works as intended ... ok test_set_dataio_data_already_set (tests.unit.utils_test.test_core_DataIO.DataIOTests) Test that Data.set_dataio works as intended ... ok test_default_message (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorResultTests) ... ok test_ensure_use_of_tuples_during_asignment (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorResultTests) ... ok test_set_error_to_illegal_type (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorResultTests) ... ok test_DataChunkIterator_error_on_undetermined_axis (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests) ... ok test_DataChunkIterator_ignore_undetermined_axis (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests) ... ok test_DataChunkIterators_match (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests) ... ok test_DynamicTableRegion_shape_validation (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests) ... ok test_array_all_dimensions_match (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests) ... ok test_array_axis_index_out_of_bounds_mutilple_axis (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests) ... ok test_array_axis_index_out_of_bounds_single_axis (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests) ... ok test_array_dimensions_mismatch (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests) ... ok test_array_unequal_number_of_axes_for_comparison (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests) ... ok test_array_unequal_number_of_dimensions (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests) ... ok test_array_unequal_number_of_dimensions_check_multiple_axesy (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests) ... ok test_array_unequal_number_of_dimensions_check_one_axis_only (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests) ... ok test_allow_positional_error (tests.unit.utils_test.test_docval.TestDocValidator) ... ok test_allow_positional_warn (tests.unit.utils_test.test_docval.TestDocValidator) ... ok test_bad_shape (tests.unit.utils_test.test_docval.TestDocValidator) ... ok test_bad_type (tests.unit.utils_test.test_docval.TestDocValidator) ... ok test_bool_string_type (tests.unit.utils_test.test_docval.TestDocValidator) ... ok test_bool_type (tests.unit.utils_test.test_docval.TestDocValidator) ... ok test_catch_dup_names (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval does not allow duplicate argument names ... ok test_docval_add (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval works with a single positional ... ok test_docval_add2 (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval works with two positional ... ok test_docval_add2_kw_all_kw_syntax (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval works with two positional ... ok test_docval_add2_kw_default (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval works with two positional ... ok test_docval_add2_kw_default_sub (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval works with a four positional arguments and ... ok test_docval_add2_kw_default_sub_missing_args (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval catches missing arguments with a four positional arguments ... ok test_docval_add2_kw_kw_syntax (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval works with two positional ... ok test_docval_add2_kw_kwsyntax_sub (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval works when called with a four positional ... ok test_docval_add2_kw_kwsyntax_sub_missing_args (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval catches missing arguments when called with a four positional ... ok test_docval_add2_kw_kwsyntax_sub_nonetype_arg (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval catches NoneType when called with a four positional ... ok test_docval_add2_kw_pos_syntax (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval works with two positional ... ok test_docval_add2_kw_pos_syntax_missing_args (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval catches incorrect type with two positional ... ok test_docval_add2_pos_as_kw (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval works with two positional ... ok test_docval_add2_w_unicode (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval works with two positional ... ok test_docval_add_kw (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval works with a single positional ... ok test_docval_add_missing_args (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval catches missing argument ... ok test_docval_add_sub (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval works with a two positional arguments, ... ok test_dup_kw (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval raises an error if a keyword argument ... ok test_enum_bad_type (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval with an enum check where the arg type includes an invalid enum type fails ... ok test_enum_bool_mixed (tests.unit.utils_test.test_docval.TestDocValidator) Test that the basic usage of an enum check on a tuple of bool, int, float, and string works ... ok test_enum_float (tests.unit.utils_test.test_docval.TestDocValidator) Test that the basic usage of an enum check on floats works ... ok test_enum_forbidden_values (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval with enum values that include a forbidden type fails ... ok test_enum_int (tests.unit.utils_test.test_docval.TestDocValidator) Test that the basic usage of an enum check on ints works ... ok test_enum_none_type (tests.unit.utils_test.test_docval.TestDocValidator) Test that the basic usage of an enum check on None works ... ok test_enum_single_allowed (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval with an enum check on a single value fails ... ok test_enum_str (tests.unit.utils_test.test_docval.TestDocValidator) Test that the basic usage of an enum check on strings works ... ok test_enum_str_default (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval with an enum check on strings and a default value works ... ok test_enum_str_none_default (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval with an enum check on strings and a None default value works ... ok test_enum_uint (tests.unit.utils_test.test_docval.TestDocValidator) Test that the basic usage of an enum check on uints works ... ok test_extra_args_dup_kw (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval raises an error if a keyword argument ... ok test_extra_args_pos_kw (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval raises an error if too many positional ... ok test_extra_args_pos_kw_ok (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval does not raise an error if too many ... ok test_extra_args_pos_only (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval raises an error if too many positional ... ok test_extra_args_pos_only_ok (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval raises an error if too many positional ... ok test_extra_kwarg (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval parses arguments when only keyword ... ok test_extra_kwargs_pos_kw (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval raises an error if extra keyword ... ok test_fmt_docval_args (tests.unit.utils_test.test_docval.TestDocValidator) Test that fmt_docval_args works ... ok test_fmt_docval_args_allow_extra (tests.unit.utils_test.test_docval.TestDocValidator) Test that fmt_docval_args works ... ok test_fmt_docval_args_no_docval (tests.unit.utils_test.test_docval.TestDocValidator) Test that fmt_docval_args raises an error when run on function without docval ... ok test_get_docval_all (tests.unit.utils_test.test_docval.TestDocValidator) Test that get_docval returns a tuple of the docval arguments ... ok test_get_docval_missing_arg (tests.unit.utils_test.test_docval.TestDocValidator) Test that get_docval throws error if the matching docval argument is not found ... ok test_get_docval_missing_arg_of_many_ok (tests.unit.utils_test.test_docval.TestDocValidator) Test that get_docval throws error if the matching docval arguments is not found ... ok test_get_docval_missing_args (tests.unit.utils_test.test_docval.TestDocValidator) Test that get_docval throws error if the matching docval arguments is not found ... ok test_get_docval_none (tests.unit.utils_test.test_docval.TestDocValidator) Test that get_docval returns an empty tuple if there is no docval ... ok test_get_docval_none_arg (tests.unit.utils_test.test_docval.TestDocValidator) Test that get_docval throws error if there is no docval and an argument name is passed ... ok test_get_docval_one_arg (tests.unit.utils_test.test_docval.TestDocValidator) Test that get_docval returns the matching docval argument ... ok test_get_docval_two_args (tests.unit.utils_test.test_docval.TestDocValidator) Test that get_docval returns the matching docval arguments in order ... ok test_multi_shape (tests.unit.utils_test.test_docval.TestDocValidator) ... ok test_only_kw_arg1_arg2 (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval parses arguments when only keyword ... ok test_only_kw_arg1_arg2_pos (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval parses arguments when only keyword ... ok test_only_kw_arg1_no_arg2 (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval parses arguments when only keyword ... ok test_only_kw_arg1_pos_no_arg2 (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval parses arguments when only keyword ... ok test_only_kw_arg2_no_arg1 (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval parses arguments when only keyword ... ok test_only_kw_no_args (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval parses arguments when only keyword ... ok test_uint_string_type (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval type specification of string 'uint' matches np.uint of all available precisions. ... ok test_uint_type (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval type specification of np.uint32 works as expected. ... ok test_unsupported_docval_term (tests.unit.utils_test.test_docval.TestDocValidator) Test that docval does not allow setting of arguments ... ok test_shape_invalid_unpack (tests.unit.utils_test.test_docval.TestDocValidatorChain) Test that passing an object for an argument with required shape and object.argument has an invalid shape ... ok test_shape_invalid_unpack_default (tests.unit.utils_test.test_docval.TestDocValidatorChain) Test that passing an object for an argument with required shape and a default value and object.argument has ... ok test_shape_none_unpack (tests.unit.utils_test.test_docval.TestDocValidatorChain) Test that passing an object for an argument with required shape and object.argument is None is OK ... ok test_shape_none_unpack_default (tests.unit.utils_test.test_docval.TestDocValidatorChain) Test that passing an object for an argument with required shape and a default value and object.argument is ... ok test_shape_other_unpack (tests.unit.utils_test.test_docval.TestDocValidatorChain) Test that passing an object for an argument with required shape and object.argument is an object without ... ok test_shape_other_unpack_default (tests.unit.utils_test.test_docval.TestDocValidatorChain) Test that passing an object for an argument with required shape and a default value and object.argument is ... ok test_shape_valid_unpack (tests.unit.utils_test.test_docval.TestDocValidatorChain) Test that passing an object for an argument with required shape tests the shape of object.argument ... ok test_shape_valid_unpack_default (tests.unit.utils_test.test_docval.TestDocValidatorChain) Test that passing an object for an argument with required shape and a default value tests the shape of ... ok test_type_arg (tests.unit.utils_test.test_docval.TestDocValidatorChain) Test that passing an object for an argument that allows a specific type works ... ok test_type_arg_wrong_type (tests.unit.utils_test.test_docval.TestDocValidatorChain) Test that passing an object for an argument that does not match a specific type raises an error ... ok test_arg_not_found_many_args (tests.unit.utils_test.test_docval.TestGetargs) ... ok test_arg_not_found_one_arg (tests.unit.utils_test.test_docval.TestGetargs) ... ok test_last_arg_not_dict (tests.unit.utils_test.test_docval.TestGetargs) ... ok test_many_args_get_all (tests.unit.utils_test.test_docval.TestGetargs) ... ok test_many_args_get_some (tests.unit.utils_test.test_docval.TestGetargs) ... ok test_many_args_reverse (tests.unit.utils_test.test_docval.TestGetargs) ... ok test_many_args_unpack (tests.unit.utils_test.test_docval.TestGetargs) ... ok test_one_arg_first (tests.unit.utils_test.test_docval.TestGetargs) ... ok test_one_arg_second (tests.unit.utils_test.test_docval.TestGetargs) ... ok test_too_few_args (tests.unit.utils_test.test_docval.TestGetargs) ... ok test_macro (tests.unit.utils_test.test_docval.TestMacro) ... ok test_arg_not_found_many_args (tests.unit.utils_test.test_docval.TestPopargs) ... ok test_arg_not_found_one_arg (tests.unit.utils_test.test_docval.TestPopargs) ... ok test_last_arg_not_dict (tests.unit.utils_test.test_docval.TestPopargs) ... ok test_many_args_pop_all (tests.unit.utils_test.test_docval.TestPopargs) ... ok test_many_args_pop_some (tests.unit.utils_test.test_docval.TestPopargs) ... ok test_many_args_reverse (tests.unit.utils_test.test_docval.TestPopargs) ... ok test_many_args_unpack (tests.unit.utils_test.test_docval.TestPopargs) ... ok test_one_arg_first (tests.unit.utils_test.test_docval.TestPopargs) ... ok test_one_arg_second (tests.unit.utils_test.test_docval.TestPopargs) ... ok test_too_few_args (tests.unit.utils_test.test_docval.TestPopargs) ... ok test_add_basic (tests.unit.utils_test.test_labelleddict.TestLabelledDict) Test add method on object with correct key_attr. ... ok test_add_callable (tests.unit.utils_test.test_labelleddict.TestLabelledDict) Test that add properly adds the object and calls the add_callable function. ... ok test_add_value_missing_key (tests.unit.utils_test.test_labelleddict.TestLabelledDict) Test that add raises an error if the value being set does not have the attribute key_attr. ... ok test_clear_callback (tests.unit.utils_test.test_labelleddict.TestLabelledDict) ... ok test_clear_nocallback (tests.unit.utils_test.test_labelleddict.TestLabelledDict) ... ok test_constructor (tests.unit.utils_test.test_labelleddict.TestLabelledDict) Test that constructor sets arguments properly. ... ok test_constructor_default (tests.unit.utils_test.test_labelleddict.TestLabelledDict) Test that constructor sets default key attribute. ... ok test_delitem_callback (tests.unit.utils_test.test_labelleddict.TestLabelledDict) ... ok test_delitem_nocallback (tests.unit.utils_test.test_labelleddict.TestLabelledDict) ... ok test_getitem_eqeq_no_key_attr (tests.unit.utils_test.test_labelleddict.TestLabelledDict) Test that dict[key_attr == val] raises an error if key_attr is not given. ... ok test_getitem_eqeq_no_key_attr_no_val (tests.unit.utils_test.test_labelleddict.TestLabelledDict) Test that dict[key_attr == val] raises an error if key_attr is not given and val is not given. ... ok test_getitem_eqeq_no_val (tests.unit.utils_test.test_labelleddict.TestLabelledDict) Test that dict[key_attr == val] raises an error if val is not given. ... ok test_getitem_eqeq_nonempty (tests.unit.utils_test.test_labelleddict.TestLabelledDict) Test that dict[key_attr == val] returns the single matching object. ... ok test_getitem_eqeq_nonempty_key_attr_no_match (tests.unit.utils_test.test_labelleddict.TestLabelledDict) Test that dict[key_attr == unknown_val] where a matching value is not found raises a KeyError. ... ok test_getitem_eqeq_nonempty_unknown_attr (tests.unit.utils_test.test_labelleddict.TestLabelledDict) Test that dict[unknown_attr == val] where unknown_attr is not a field on the values raises an error. ... ok test_getitem_eqeq_other_key (tests.unit.utils_test.test_labelleddict.TestLabelledDict) Test that dict[other_attr == val] where there are no query matches returns an empty set. ... ok test_getitem_eqeq_unknown_val (tests.unit.utils_test.test_labelleddict.TestLabelledDict) Test that dict[unknown_attr == val] where there are no query matches returns an empty set. ... ok test_getitem_nonempty_other_key (tests.unit.utils_test.test_labelleddict.TestLabelledDict) Test that dict[other_key == val] returns a set of matching objects. ... ok test_getitem_unknown_val (tests.unit.utils_test.test_labelleddict.TestLabelledDict) Test that dict[unknown_key] where the key unknown_key is not in the dict raises an error. ... ok test_pop_callback (tests.unit.utils_test.test_labelleddict.TestLabelledDict) ... ok test_pop_nocallback (tests.unit.utils_test.test_labelleddict.TestLabelledDict) ... ok test_popitem_callback (tests.unit.utils_test.test_labelleddict.TestLabelledDict) ... ok test_popitem_nocallback (tests.unit.utils_test.test_labelleddict.TestLabelledDict) ... ok test_set_key_attr (tests.unit.utils_test.test_labelleddict.TestLabelledDict) Test that the key attribute cannot be set after initialization. ... ok test_setdefault_callback (tests.unit.utils_test.test_labelleddict.TestLabelledDict) ... ok test_setitem_callable (tests.unit.utils_test.test_labelleddict.TestLabelledDict) Test that setitem properly sets the object and calls the add_callable function. ... ok test_setitem_getitem_basic (tests.unit.utils_test.test_labelleddict.TestLabelledDict) Test that setitem and getitem properly set and get the object. ... ok test_setitem_value_duplicate_key (tests.unit.utils_test.test_labelleddict.TestLabelledDict) Test that setitem raises an error if the key already exists in the dict. ... ok test_setitem_value_inconsistent_key (tests.unit.utils_test.test_labelleddict.TestLabelledDict) Test that setitem raises an error if the value being set has an inconsistent key. ... ok test_setitem_value_missing_key (tests.unit.utils_test.test_labelleddict.TestLabelledDict) Test that setitem raises an error if the value being set does not have the attribute key_attr. ... ok test_update_callback (tests.unit.utils_test.test_labelleddict.TestLabelledDict) ... ok test_arbitrary_iterable_with_len (tests.unit.utils_test.test_utils.TestGetDataShape) Test get_data_shape with strict_no_data_load=True on an arbitrary iterable object with __len__. ... ok test_dataio (tests.unit.utils_test.test_utils.TestGetDataShape) Test get_data_shape on DataIO of various shapes and maxshape. ... ok test_dci (tests.unit.utils_test.test_utils.TestGetDataShape) Test get_data_shape on DataChunkIterators of various shapes and maxshape. ... ok test_h5dataset (tests.unit.utils_test.test_utils.TestGetDataShape) Test get_data_shape on h5py.Datasets of various shapes and maxshape. ... ok test_list (tests.unit.utils_test.test_utils.TestGetDataShape) Test get_data_shape on lists of various shapes. ... ok test_nparray (tests.unit.utils_test.test_utils.TestGetDataShape) Test get_data_shape on numpy arrays of various shapes. ... ok test_other (tests.unit.utils_test.test_utils.TestGetDataShape) Test get_data_shape on miscellaneous edge cases. ... ok test_set (tests.unit.utils_test.test_utils.TestGetDataShape) Test get_data_shape on sets, which have __len__ but are not subscriptable. ... ok test_strict_no_data_load (tests.unit.utils_test.test_utils.TestGetDataShape) Test get_data_shape with strict_no_data_load=True on nested lists/tuples is the same as when it is False. ... ok test_string (tests.unit.utils_test.test_utils.TestGetDataShape) Test get_data_shape on strings and collections of strings. ... ok test_tuple (tests.unit.utils_test.test_utils.TestGetDataShape) Test get_data_shape on tuples of various shapes. ... ok test_list_float (tests.unit.utils_test.test_utils.TestToUintArray) ... ok test_list_int (tests.unit.utils_test.test_utils.TestToUintArray) ... ok test_list_int_neg (tests.unit.utils_test.test_utils.TestToUintArray) ... ok test_ndarray_float (tests.unit.utils_test.test_utils.TestToUintArray) ... ok test_ndarray_int (tests.unit.utils_test.test_utils.TestToUintArray) ... ok test_ndarray_int_neg (tests.unit.utils_test.test_utils.TestToUintArray) ... ok test_ndarray_uint (tests.unit.utils_test.test_utils.TestToUintArray) ... ok test_empty_list (tests.unit.validator_tests.test_validate.Test1DArrayValidation) Test that validator allows an empty list where an array is specified. ... ok test_empty_nparray (tests.unit.validator_tests.test_validate.Test1DArrayValidation) Test that validator allows an empty numpy array where an array is specified. ... ok test_scalar (tests.unit.validator_tests.test_validate.Test1DArrayValidation) Test that validator does not allow a scalar where an array is specified. ... ok test_invalid_incorrect_type_get_validator (tests.unit.validator_tests.test_validate.TestBasicSpec) ... ok test_invalid_incorrect_type_validate (tests.unit.validator_tests.test_validate.TestBasicSpec) ... ok test_invalid_missing (tests.unit.validator_tests.test_validate.TestBasicSpec) ... ok test_valid (tests.unit.validator_tests.test_validate.TestBasicSpec) ... ok test_invalid_isodatetime (tests.unit.validator_tests.test_validate.TestDateTimeInSpec) ... ok test_invalid_isodatetime_array (tests.unit.validator_tests.test_validate.TestDateTimeInSpec) ... ok test_valid_isodatetime (tests.unit.validator_tests.test_validate.TestDateTimeInSpec) ... ok test_ascii_for_utf8 (tests.unit.validator_tests.test_validate.TestDtypeValidation) Test that validator allows ASCII data where UTF8 is specified. ... ok test_bool_for_numeric (tests.unit.validator_tests.test_validate.TestDtypeValidation) Test that validator does not allow bool data where numeric is specified. ... ok test_int64_for_int8 (tests.unit.validator_tests.test_validate.TestDtypeValidation) Test that validator allows int64 data where int8 is specified. ... ok test_int64_for_numeric (tests.unit.validator_tests.test_validate.TestDtypeValidation) Test that validator allows int64 data where numeric is specified. ... ok test_int8_for_int64 (tests.unit.validator_tests.test_validate.TestDtypeValidation) Test that validator does not allow int8 data where int64 is specified. ... ok test_utf8_for_ascii (tests.unit.validator_tests.test_validate.TestDtypeValidation) Test that validator does not allow UTF8 where ASCII is specified. ... ok test_invalid_missing_req_type (tests.unit.validator_tests.test_validate.TestEmptySpec) ... ok test_valid (tests.unit.validator_tests.test_validate.TestEmptySpec) ... ok test_invalid_missing_named_req_group (tests.unit.validator_tests.test_validate.TestNestedTypes) Test that a MissingDataType is returned when a required named nested data type is missing. ... ok test_invalid_missing_unnamed_req_group (tests.unit.validator_tests.test_validate.TestNestedTypes) Test that a MissingDataType is returned when a required unnamed nested data type is missing. ... ok test_invalid_wrong_name_req_type (tests.unit.validator_tests.test_validate.TestNestedTypes) Test that a MissingDataType is returned when a required nested data type is given the wrong name. ... ok test_valid (tests.unit.validator_tests.test_validate.TestNestedTypes) Test that no errors are returned when nested data types are correctly built. ... ok test_valid_wo_opt_attr (tests.unit.validator_tests.test_validate.TestNestedTypes) "Test that no errors are returned when an optional attribute is omitted from a group. ... ok ---------------------------------------------------------------------- Ran 949 tests in 20.635s OK (skipped=3, expected failures=1) create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/hdmf-2.3.0/debian/python3-hdmf found these packages: ['hdmf', 'hdmf.validate', 'hdmf.testing', 'hdmf.spec', 'hdmf.common', 'hdmf.build', 'hdmf.backends', 'hdmf.common.io', 'hdmf.backends.hdf5'] ['h5py>=2.9,<3', 'numpy>=1.16,<1.19.4', 'scipy>=1.1,<2', 'pandas>=0.23,<2', 'ruamel.yaml>=0.15,<1', 'jsonschema>=2.6.0,<4'] running install running build running build_py UPDATING /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/_version.py set /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/_version.py to '2.3.0' running install_lib creating /build/hdmf-2.3.0/debian/python3-hdmf/usr creating /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib creating /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9 creating /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages creating /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/_version.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf creating /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/__pycache__/_due.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/__pycache__/_version.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/__pycache__/region.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/__pycache__/data_utils.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/__pycache__/container.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/__pycache__/utils.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/__pycache__/array.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/__pycache__/query.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/__pycache__/__init__.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/__pycache__ creating /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/backends creating /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/backends/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/backends/__pycache__/warnings.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/backends/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/backends/__pycache__/io.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/backends/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/backends/__pycache__/__init__.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/backends/__pycache__ creating /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/backends/hdf5 creating /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/backends/hdf5/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/backends/hdf5/__pycache__/h5tools.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/backends/hdf5/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/backends/hdf5/__pycache__/h5_utils.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/backends/hdf5/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/backends/hdf5/__pycache__/__init__.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/backends/hdf5/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/backends/hdf5/__init__.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/backends/hdf5 copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/backends/hdf5/h5_utils.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/backends/hdf5 copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/backends/hdf5/h5tools.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/backends/hdf5 copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/backends/__init__.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/backends copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/backends/io.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/backends copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/backends/warnings.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/backends creating /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/build creating /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/build/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/build/__pycache__/warnings.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/build/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/build/__pycache__/objectmapper.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/build/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/build/__pycache__/manager.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/build/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/build/__pycache__/errors.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/build/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/build/__pycache__/builders.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/build/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/build/__pycache__/__init__.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/build/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/build/__init__.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/build copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/build/builders.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/build copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/build/errors.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/build copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/build/manager.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/build copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/build/map.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/build copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/build/objectmapper.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/build copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/build/warnings.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/build creating /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common creating /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/__pycache__/sparse.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/__pycache__/table.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/__pycache__/resources.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/__pycache__/multi.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/__pycache__/__init__.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/__pycache__ creating /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/hdmf-common-schema creating /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/hdmf-common-schema/common copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/hdmf-common-schema/common/base.yaml -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/hdmf-common-schema/common copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/hdmf-common-schema/common/namespace.yaml -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/hdmf-common-schema/common copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/hdmf-common-schema/common/resources.yaml -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/hdmf-common-schema/common copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/hdmf-common-schema/common/sparse.yaml -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/hdmf-common-schema/common copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/hdmf-common-schema/common/table.yaml -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/hdmf-common-schema/common creating /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/io creating /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/io/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/io/__pycache__/table.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/io/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/io/__pycache__/resources.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/io/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/io/__pycache__/multi.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/io/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/io/__pycache__/__init__.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/io/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/io/__init__.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/io copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/io/multi.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/io copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/io/resources.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/io copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/io/table.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/io copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/__init__.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/multi.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/resources.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/sparse.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/common/table.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common creating /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/spec creating /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/spec/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/spec/__pycache__/write.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/spec/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/spec/__pycache__/namespace.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/spec/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/spec/__pycache__/spec.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/spec/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/spec/__pycache__/catalog.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/spec/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/spec/__pycache__/__init__.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/spec/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/spec/__init__.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/spec copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/spec/catalog.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/spec copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/spec/namespace.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/spec copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/spec/spec.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/spec copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/spec/write.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/spec creating /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/testing creating /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/testing/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/testing/__pycache__/utils.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/testing/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/testing/__pycache__/testcase.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/testing/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/testing/__pycache__/__init__.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/testing/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/testing/__init__.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/testing copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/testing/testcase.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/testing copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/testing/utils.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/testing copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/testing/validate_spec.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/testing creating /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/validate creating /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/validate/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/validate/__pycache__/validator.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/validate/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/validate/__pycache__/errors.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/validate/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/validate/__pycache__/__init__.cpython-39.pyc -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/validate/__pycache__ copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/validate/__init__.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/validate copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/validate/errors.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/validate copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/validate/validator.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/validate copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/__init__.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/_due.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/array.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/container.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/data_utils.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/monitor.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/query.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/region.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf copying /build/hdmf-2.3.0/.pybuild/cpython3_3.9_hdmf/build/hdmf/utils.py -> /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/_version.py to _version.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/backends/hdf5/__init__.py to __init__.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/backends/hdf5/h5_utils.py to h5_utils.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/backends/hdf5/h5tools.py to h5tools.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/backends/__init__.py to __init__.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/backends/io.py to io.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/backends/warnings.py to warnings.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/build/__init__.py to __init__.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/build/builders.py to builders.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/build/errors.py to errors.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/build/manager.py to manager.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/build/map.py to map.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/build/objectmapper.py to objectmapper.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/build/warnings.py to warnings.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/io/__init__.py to __init__.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/io/multi.py to multi.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/io/resources.py to resources.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/io/table.py to table.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/__init__.py to __init__.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/multi.py to multi.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/resources.py to resources.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/sparse.py to sparse.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/common/table.py to table.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/spec/__init__.py to __init__.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/spec/catalog.py to catalog.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/spec/namespace.py to namespace.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/spec/spec.py to spec.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/spec/write.py to write.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/testing/__init__.py to __init__.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/testing/testcase.py to testcase.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/testing/utils.py to utils.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/testing/validate_spec.py to validate_spec.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/validate/__init__.py to __init__.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/validate/errors.py to errors.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/validate/validator.py to validator.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/__init__.py to __init__.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/_due.py to _due.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/array.py to array.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/container.py to container.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/data_utils.py to data_utils.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/monitor.py to monitor.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/query.py to query.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/region.py to region.cpython-39.pyc byte-compiling /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf/utils.py to utils.cpython-39.pyc running install_egg_info running egg_info writing src/hdmf.egg-info/PKG-INFO writing dependency_links to src/hdmf.egg-info/dependency_links.txt writing entry points to src/hdmf.egg-info/entry_points.txt writing requirements to src/hdmf.egg-info/requires.txt writing top-level names to src/hdmf.egg-info/top_level.txt reading manifest file 'src/hdmf.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'src/hdmf.egg-info/SOURCES.txt' Copying src/hdmf.egg-info to /build/hdmf-2.3.0/debian/python3-hdmf/usr/lib/python3.9/dist-packages/hdmf-2.3.0.egg-info Skipping SOURCES.txt running install_scripts Installing validate_hdmf_spec script to /build/hdmf-2.3.0/debian/python3-hdmf/usr/bin dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-hdmf' in '../python3-hdmf_2.3.0-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../hdmf_2.3.0-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from hdmf-2.3.0/debian/source/options: --extend-diff-ignore=^src/[^/]+\.egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/4657/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/4657/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4657 and its subdirectories I: Current time: Wed Sep 14 15:52:53 +14 2022 I: pbuilder-time-stamp: 1663120373