I: pbuilder: network access will be disabled during build I: Current time: Mon Jan 10 21:31:17 +14 2022 I: pbuilder-time-stamp: 1641799877 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [scrappie_1.4.2-7.dsc] I: copying [./scrappie_1.4.2.orig.tar.gz] I: copying [./scrappie_1.4.2-7.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.Xce6txZY/trustedkeys.kbx': General error gpgv: Signature made Sun Apr 4 09:21:39 2021 +14 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./scrappie_1.4.2-7.dsc dpkg-source: info: extracting scrappie in scrappie-1.4.2 dpkg-source: info: unpacking scrappie_1.4.2.orig.tar.gz dpkg-source: info: unpacking scrappie_1.4.2-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying simde.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4179147/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/4179147/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/4179147/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=006329cd9b8f4b5da31bad349549dc22 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=4179147 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.mU9LpKAVGl/pbuilderrc_U66b --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.mU9LpKAVGl/b2 --logfile b2/build.log scrappie_1.4.2-7.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 5.10.0-10-amd64 #1 SMP Debian 5.10.84-1 (2021-12-08) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 5 10:25 bash -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash -rwxr-xr-x 1 root root 113664 Sep 24 2020 date -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd -rwxr-xr-x 1 root root 93936 Sep 24 2020 df -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir -rwxr-xr-x 1 root root 84440 Jul 29 09:09 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 24 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 29 09:09 findmnt -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 3 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln -rwxr-xr-x 1 root root 56952 Feb 8 2020 login -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls -rwxr-xr-x 1 root root 149736 Jul 29 09:09 lsblk -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 29 09:09 more -rwsr-xr-x 1 root root 55528 Jul 29 09:09 mount -rwxr-xr-x 1 root root 18664 Jul 29 09:09 mountpoint -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Jan 10 21:31 sh -> bash lrwxrwxrwx 1 root root 4 Jan 7 23:24 sh.distrib -> dash -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty -rwsr-xr-x 1 root root 71912 Jul 29 09:09 su -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch -rwxr-xr-x 1 root root 39680 Sep 24 2020 true -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 29 09:09 umount -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 29 09:09 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew I: user script /srv/workspace/pbuilder/4179147/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libcunit1-dev, libhdf5-dev, libopenblas-dev, cmake, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libcunit1-dev; however: Package libcunit1-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libopenblas-dev; however: Package libopenblas-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libcunit1{a} libcunit1-dev{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libicu67{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp24{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libpipeline1{a} libprocps8{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsimde-dev{a} libssh2-1{a} libsub-override-perl{a} libsz2{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 44.9 MB of archives. After unpacking 237 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2 [102 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 cmake-data all 3.18.4-2+deb11u1 [1725 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libarchive13 amd64 3.4.3-2+b1 [343 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3 [232 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u1 [341 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libjsoncpp24 amd64 1.9.4-4 [78.9 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 librhash0 amd64 1.4.1-2 [129 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libuv1 amd64 1.40.0-2 [132 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 cmake amd64 3.18.4-2+deb11u1 [5593 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 hdf5-helpers amd64 1.10.6+repack-4+deb11u1 [40.4 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 libaec0 amd64 1.0.4-1 [20.3 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libsz2 amd64 1.0.4-1 [6760 B] Get: 54 http://deb.debian.org/debian bullseye/main amd64 libaec-dev amd64 1.0.4-1 [18.7 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libcunit1 amd64 2.1-3-dfsg-2.3 [33.0 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libcunit1-dev amd64 2.1-3-dfsg-2.3 [62.9 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libhdf5-103-1 amd64 1.10.6+repack-4+deb11u1 [1189 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 libhdf5-cpp-103-1 amd64 1.10.6+repack-4+deb11u1 [141 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libhdf5-fortran-102 amd64 1.10.6+repack-4+deb11u1 [105 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 libhdf5-hl-100 amd64 1.10.6+repack-4+deb11u1 [81.8 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 libhdf5-hl-fortran-100 amd64 1.10.6+repack-4+deb11u1 [56.8 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 libhdf5-hl-cpp-100 amd64 1.10.6+repack-4+deb11u1 [37.7 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo-dev amd64 1:2.0.6-4 [278 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 libjpeg-dev amd64 1:2.0.6-4 [67.8 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 libhdf5-dev amd64 1.10.6+repack-4+deb11u1 [2438 kB] Get: 69 http://deb.debian.org/debian bullseye/main amd64 libopenblas0-pthread amd64 0.3.13+ds-3 [6034 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 libopenblas0 amd64 0.3.13+ds-3 [32.8 kB] Get: 71 http://deb.debian.org/debian bullseye/main amd64 libopenblas-pthread-dev amd64 0.3.13+ds-3 [4477 kB] Get: 72 http://deb.debian.org/debian bullseye/main amd64 libopenblas-dev amd64 0.3.13+ds-3 [44.1 kB] Get: 73 http://deb.debian.org/debian bullseye/main amd64 libsimde-dev all 0.7.2-4 [259 kB] Fetched 44.9 MB in 2s (24.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... 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Preparing to unpack .../72-libsimde-dev_0.7.2-4_all.deb ... Unpacking libsimde-dev (0.7.2-4) ... Setting up libexpat1:amd64 (2.2.10-2) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up libsimde-dev (0.7.2-4) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up hdf5-helpers (1.10.6+repack-4+deb11u1) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libnghttp2-14:amd64 (1.43.0-1) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libaec0:amd64 (1.0.4-1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libuv1:amd64 (1.40.0-2) ... Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up libjpeg62-turbo-dev:amd64 (1:2.0.6-4) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:amd64 (6.2+20201114-2) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up libjsoncpp24:amd64 (1.9.4-4) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up librhash0:amd64 (1.4.1-2) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libcunit1:amd64 (2.1-3-dfsg-2.3) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up cmake-data (3.18.4-2+deb11u1) ... Setting up libelf1:amd64 (0.183-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up libprocps8:amd64 (2:3.3.17-5) ... Setting up libsz2:amd64 (1.0.4-1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libopenblas0-pthread:amd64 (0.3.13+ds-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libtool (2.4.6-15) ... Setting up libarchive13:amd64 (3.4.3-2+b1) ... Setting up libaec-dev:amd64 (1.0.4-1) ... Setting up libjpeg-dev:amd64 (1:2.0.6-4) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libcunit1-dev (2.1-3-dfsg-2.3) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up libhdf5-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Setting up dwz (0.13+20210201-1) ... Setting up libopenblas0:amd64 (0.3.13+ds-3) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libhdf5-cpp-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libcurl4:amd64 (7.74.0-1.3+deb11u1) ... Setting up libhdf5-hl-100:amd64 (1.10.6+repack-4+deb11u1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libopenblas-pthread-dev:amd64 (0.3.13+ds-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libopenblas-dev:amd64 (0.3.13+ds-3) ... Setting up libhdf5-hl-cpp-100:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libhdf5-fortran-102:amd64 (1.10.6+repack-4+deb11u1) ... Setting up cmake (3.18.4-2+deb11u1) ... Setting up libhdf5-hl-fortran-100:amd64 (1.10.6+repack-4+deb11u1) ... Setting up debhelper (13.3.4) ... Setting up libhdf5-dev (1.10.6+repack-4+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Processing triggers for libc-bin (2.31-13+deb11u2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package hostname: Name or service not known I: Running cd /build/scrappie-1.4.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../scrappie_1.4.2-7_source.changes dpkg-buildpackage: info: source package scrappie dpkg-buildpackage: info: source version 1.4.2-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/build/scrappie-1.4.2' dh_auto_clean install -d /build/scrappie-1.4.2/debian/.debhelper/generated/_source/home rm -Rf build_* make[1]: Leaving directory '/build/scrappie-1.4.2' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/scrappie.substvars debian/files rm -fr -- debian/scrappie/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/scrappie-1.4.2' for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2 ; do \ export CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && export CFLAGS="-g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && \ dh_auto_configure --builddirectory build_${SIMD} -- -DEXE_SUFFIX=-${SIMD} ; \ done install -d /build/scrappie-1.4.2/debian/.debhelper/generated/_source/home install -d build_avx2 cd build_avx2 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-avx2 .. -- The C compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Performing Test HAS_OPENMP -- Performing Test HAS_OPENMP - Success -- Looking for hdf5.h -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR EXE_SUFFIX -- Build files have been written to: /build/scrappie-1.4.2/build_avx2 install -d build_avx cd build_avx && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-avx .. -- The C compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Performing Test HAS_OPENMP -- Performing Test HAS_OPENMP - Success -- Looking for hdf5.h -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR EXE_SUFFIX -- Build files have been written to: /build/scrappie-1.4.2/build_avx install -d build_sse4.1 cd build_sse4.1 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-sse4.1 .. -- The C compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Performing Test HAS_OPENMP -- Performing Test HAS_OPENMP - Success -- Looking for hdf5.h -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR EXE_SUFFIX -- Build files have been written to: /build/scrappie-1.4.2/build_sse4.1 install -d build_ssse3 cd build_ssse3 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-ssse3 .. -- The C compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Performing Test HAS_OPENMP -- Performing Test HAS_OPENMP - Success -- Looking for hdf5.h -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR EXE_SUFFIX -- Build files have been written to: /build/scrappie-1.4.2/build_ssse3 install -d build_sse3 cd build_sse3 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-sse3 .. -- The C compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Performing Test HAS_OPENMP -- Performing Test HAS_OPENMP - Success -- Looking for hdf5.h -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR EXE_SUFFIX -- Build files have been written to: /build/scrappie-1.4.2/build_sse3 install -d build_sse2 cd build_sse2 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-sse2 .. -- The C compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Performing Test HAS_OPENMP -- Performing Test HAS_OPENMP - Success -- Looking for hdf5.h -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR EXE_SUFFIX -- Build files have been written to: /build/scrappie-1.4.2/build_sse2 export CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3" && export CFLAGS="-g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3" && \ dh_auto_configure --builddirectory build_plain -- -DEXE_SUFFIX=-plain install -d build_plain cd build_plain && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-plain .. -- The C compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Performing Test HAS_OPENMP -- Performing Test HAS_OPENMP - Success -- Looking for hdf5.h -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR EXE_SUFFIX -- Build files have been written to: /build/scrappie-1.4.2/build_plain make[1]: Leaving directory '/build/scrappie-1.4.2' rm -f debian/scrappie.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/build/scrappie-1.4.2' mkdir -p /build/scrappie-1.4.2/debian/scrappie/usr/bin for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2 ; do \ dh_auto_build --builddirectory build_${SIMD} && \ cp build_${SIMD}/scrappie build_${SIMD}/scrappie-${SIMD} ; \ done cd build_avx2 && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/scrappie-1.4.2/build_avx2' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/scrappie-1.4.2/build_avx2/CMakeFiles /build/scrappie-1.4.2/build_avx2//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/scrappie-1.4.2/build_avx2' make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_avx2' cd /build/scrappie-1.4.2/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_avx2 /build/scrappie-1.4.2/build_avx2 /build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie_objects.dir/DependInfo.cmake --color= make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_avx2' cd /build/scrappie-1.4.2/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_avx2 /build/scrappie-1.4.2/build_avx2 /build/scrappie-1.4.2/build_avx2/CMakeFiles/test_interface.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie_objects.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie_objects.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_avx2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie_objects.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_avx2/CMakeFiles/test_interface.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_avx2/CMakeFiles/test_interface.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_avx2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_avx2/CMakeFiles/test_interface.dir/depend.internal". Scanning dependencies of target test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_avx2' make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_avx2' [ 2%] Building C object CMakeFiles/test_interface.dir/src/test_interface.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/test_interface.dir/src/test_interface.c.o -c /build/scrappie-1.4.2/src/test_interface.c Scanning dependencies of target scrappie_objects make[4]: Leaving directory '/build/scrappie-1.4.2/build_avx2' make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_avx2' [ 5%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/decode.c.o -c /build/scrappie-1.4.2/src/decode.c [ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -c /build/scrappie-1.4.2/src/event_detection.c [ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c /build/scrappie-1.4.2/src/layers.c [ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/networks.c.o -c /build/scrappie-1.4.2/src/networks.c [ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/scrappie-1.4.2/src/nnfeatures.c [ 18%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /build/scrappie-1.4.2/src/scrappie_matrix.c [ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /build/scrappie-1.4.2/src/scrappie_common.c [ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /build/scrappie-1.4.2/src/scrappie_seq_helpers.c [ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/util.c.o -c /build/scrappie-1.4.2/src/util.c [ 28%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/scrappie-1.4.2/src/homopolymer.c [ 31%] Linking C executable test_interface /usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_interface.dir/src/test_interface.c.o -o test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_avx2' [ 31%] Built target test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_avx2' [ 31%] Built target scrappie_objects make -f CMakeFiles/scrappie_static.dir/build.make CMakeFiles/scrappie_static.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_avx2' cd /build/scrappie-1.4.2/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_avx2 /build/scrappie-1.4.2/build_avx2 /build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie_static.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie_static.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie_static.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_avx2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie_static.dir/depend.internal". Scanning dependencies of target scrappie_static make[4]: Leaving directory '/build/scrappie-1.4.2/build_avx2' make -f CMakeFiles/scrappie_static.dir/build.make CMakeFiles/scrappie_static.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_avx2' [ 34%] Linking C static library libscrappie.a /usr/bin/cmake -P CMakeFiles/scrappie_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_static.dir/link.txt --verbose=1 /usr/bin/ar qc libscrappie.a CMakeFiles/scrappie_objects.dir/src/decode.c.o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o CMakeFiles/scrappie_objects.dir/src/layers.c.o CMakeFiles/scrappie_objects.dir/src/networks.c.o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o CMakeFiles/scrappie_objects.dir/src/util.c.o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/ranlib libscrappie.a make[4]: Leaving directory '/build/scrappie-1.4.2/build_avx2' [ 34%] Built target scrappie_static make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/depend make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_avx2' cd /build/scrappie-1.4.2/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_avx2 /build/scrappie-1.4.2/build_avx2 /build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/scrappie-1.4.2/build_avx2' cd /build/scrappie-1.4.2/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_avx2 /build/scrappie-1.4.2/build_avx2 /build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie_unittest.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_avx2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie_unittest.dir/depend.internal". Scanning dependencies of target scrappie_unittest make[4]: Leaving directory '/build/scrappie-1.4.2/build_avx2' make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build Dependee "/build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_avx2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie.dir/depend.internal". make[4]: Entering directory '/build/scrappie-1.4.2/build_avx2' [ 36%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -c /build/scrappie-1.4.2/src/test/test_map_to_sequence.c [ 39%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o [ 42%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o [ 44%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o [ 47%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o Scanning dependencies of target scrappie /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -c /build/scrappie-1.4.2/src/test/scrappie_test_runner.c make[4]: Leaving directory '/build/scrappie-1.4.2/build_avx2' make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_avx2' /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_util.c [ 50%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o [ 52%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -c /build/scrappie-1.4.2/src/test/scrappie_util.c /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_convolution.c /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -c /build/scrappie-1.4.2/src/test/test_skeleton.c /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_decoding.c [ 55%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /build/scrappie-1.4.2/src/test/scrappie_util.c:4: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from /usr/include/simde/simde-common.h:39, from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /build/scrappie-1.4.2/src/scrappie_matrix.h:6, from /build/scrappie-1.4.2/src/test/scrappie_util.h:4, from /build/scrappie-1.4.2/src/test/test_scrappie_util.c:6: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 60%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o [ 60%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie.c.o -c /build/scrappie-1.4.2/src/scrappie.c /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -c /build/scrappie-1.4.2/src/scrappie_raw.c [ 63%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/scrappie-1.4.2/src/scrappie_events.c [ 71%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_event_detection.c [ 68%] Building C object CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o [ 65%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 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C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_signal.c [ 81%] Building C object CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -c 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CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm [100%] Linking C executable scrappie_unittest /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o 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-O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -c /build/scrappie-1.4.2/src/test/test_skeleton.c [ 65%] Building C object CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o [ 68%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -c /build/scrappie-1.4.2/src/scrappie_squiggle.c /usr/bin/cc -I/build/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 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-I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_signal.c [ 92%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_squiggle.c [ 94%] Building C object 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CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm [100%] Linking C executable scrappie_unittest /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o 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Scanning dependencies of target test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse4.1' make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_sse4.1' [ 2%] Building C object CMakeFiles/test_interface.dir/src/test_interface.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/test_interface.dir/src/test_interface.c.o -c /build/scrappie-1.4.2/src/test_interface.c Scanning dependencies of target scrappie_objects make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse4.1' make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_sse4.1' [ 5%] 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-I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/scrappie-1.4.2/src/nnfeatures.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /build/scrappie-1.4.2/src/scrappie_common.c [ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o [ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /build/scrappie-1.4.2/src/scrappie_matrix.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /build/scrappie-1.4.2/src/scrappie_seq_helpers.c [ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o [ 28%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/util.c.o -c /build/scrappie-1.4.2/src/util.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/scrappie-1.4.2/src/homopolymer.c [ 31%] Linking C executable test_interface /usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_interface.dir/src/test_interface.c.o -o test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse4.1' [ 31%] Built target test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse4.1' [ 31%] Built target scrappie_objects make -f CMakeFiles/scrappie_static.dir/build.make CMakeFiles/scrappie_static.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_sse4.1' cd /build/scrappie-1.4.2/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_sse4.1 /build/scrappie-1.4.2/build_sse4.1 /build/scrappie-1.4.2/build_sse4.1/CMakeFiles/scrappie_static.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_sse4.1/CMakeFiles/scrappie_static.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_sse4.1/CMakeFiles/scrappie_static.dir/depend.internal". 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Scanning dependencies of target scrappie_static make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse4.1' make -f CMakeFiles/scrappie_static.dir/build.make CMakeFiles/scrappie_static.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_sse4.1' [ 34%] Linking C static library libscrappie.a /usr/bin/cmake -P CMakeFiles/scrappie_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_static.dir/link.txt --verbose=1 /usr/bin/ar qc libscrappie.a CMakeFiles/scrappie_objects.dir/src/decode.c.o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o CMakeFiles/scrappie_objects.dir/src/layers.c.o CMakeFiles/scrappie_objects.dir/src/networks.c.o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o CMakeFiles/scrappie_objects.dir/src/util.c.o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/ranlib libscrappie.a make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse4.1' [ 34%] Built target scrappie_static make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/depend make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_sse4.1' cd /build/scrappie-1.4.2/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_sse4.1 /build/scrappie-1.4.2/build_sse4.1 /build/scrappie-1.4.2/build_sse4.1/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/scrappie-1.4.2/build_sse4.1' cd /build/scrappie-1.4.2/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_sse4.1 /build/scrappie-1.4.2/build_sse4.1 /build/scrappie-1.4.2/build_sse4.1/CMakeFiles/scrappie.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_sse4.1/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_sse4.1/CMakeFiles/scrappie_unittest.dir/depend.internal". 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Scanning dependencies of target scrappie_unittest make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse4.1' make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_sse4.1' [ 36%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -c /build/scrappie-1.4.2/src/test/scrappie_test_runner.c [ 39%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o Scanning dependencies of target scrappie make[4]: Leaving directory 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-fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_util.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -c /build/scrappie-1.4.2/src/test/scrappie_util.c [ 47%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o [ 50%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include 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/usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /build/scrappie-1.4.2/src/test/scrappie_util.c:4: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 57%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -c /build/scrappie-1.4.2/src/scrappie_raw.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from /usr/include/simde/simde-common.h:39, from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /build/scrappie-1.4.2/src/scrappie_matrix.h:6, from /build/scrappie-1.4.2/src/test/scrappie_util.h:4, from /build/scrappie-1.4.2/src/test/test_scrappie_util.c:6: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -c /build/scrappie-1.4.2/src/test/test_skeleton.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/scrappie-1.4.2/src/scrappie_events.c [ 60%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o [ 63%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /build/scrappie-1.4.2/src/scrappie_mappy.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_decoding.c [ 65%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_elu.c [ 68%] Building C object 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/build/scrappie-1.4.2/src/test/test_scrappie_event_detection.c [ 73%] Building C object CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -c /build/scrappie-1.4.2/src/scrappie_squiggle.c [ 76%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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'/build/scrappie-1.4.2/build_sse4.1' [100%] Built target scrappie_unittest make[3]: Leaving directory '/build/scrappie-1.4.2/build_sse4.1' /usr/bin/cmake -E cmake_progress_start /build/scrappie-1.4.2/build_sse4.1/CMakeFiles 0 make[2]: Leaving directory '/build/scrappie-1.4.2/build_sse4.1' cd build_ssse3 && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/scrappie-1.4.2/build_ssse3' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/scrappie-1.4.2/build_ssse3/CMakeFiles /build/scrappie-1.4.2/build_ssse3//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/scrappie-1.4.2/build_ssse3' make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/depend make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_ssse3' cd /build/scrappie-1.4.2/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_objects.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/scrappie-1.4.2/build_ssse3' cd /build/scrappie-1.4.2/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3/CMakeFiles/test_interface.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_objects.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_objects.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_objects.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/test_interface.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/test_interface.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/test_interface.dir/depend.internal". Scanning dependencies of target test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_ssse3' [ 2%] Building C object CMakeFiles/test_interface.dir/src/test_interface.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/test_interface.dir/src/test_interface.c.o -c /build/scrappie-1.4.2/src/test_interface.c [ 5%] Linking C executable test_interface /usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_interface.dir/src/test_interface.c.o -o test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' [ 5%] Built target test_interface Scanning dependencies of target scrappie_objects make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_ssse3' [ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o [ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o [ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -c /build/scrappie-1.4.2/src/event_detection.c /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c /build/scrappie-1.4.2/src/layers.c /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /build/scrappie-1.4.2/src/scrappie_common.c [ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/scrappie-1.4.2/src/nnfeatures.c [ 18%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/networks.c.o -c /build/scrappie-1.4.2/src/networks.c [ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /build/scrappie-1.4.2/src/scrappie_seq_helpers.c [ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/scrappie-1.4.2/src/homopolymer.c [ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/decode.c.o -c /build/scrappie-1.4.2/src/decode.c [ 28%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/util.c.o -c /build/scrappie-1.4.2/src/util.c [ 31%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /build/scrappie-1.4.2/src/scrappie_matrix.c make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' [ 31%] Built target scrappie_objects make -f CMakeFiles/scrappie_static.dir/build.make CMakeFiles/scrappie_static.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_ssse3' cd /build/scrappie-1.4.2/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_static.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_static.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_static.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_static.dir/depend.internal". Scanning dependencies of target scrappie_static make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' make -f CMakeFiles/scrappie_static.dir/build.make CMakeFiles/scrappie_static.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_ssse3' [ 34%] Linking C static library libscrappie.a /usr/bin/cmake -P CMakeFiles/scrappie_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_static.dir/link.txt --verbose=1 /usr/bin/ar qc libscrappie.a CMakeFiles/scrappie_objects.dir/src/decode.c.o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o CMakeFiles/scrappie_objects.dir/src/layers.c.o CMakeFiles/scrappie_objects.dir/src/networks.c.o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o CMakeFiles/scrappie_objects.dir/src/util.c.o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/ranlib libscrappie.a make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' [ 34%] Built target scrappie_static make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/depend make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_ssse3' cd /build/scrappie-1.4.2/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/scrappie-1.4.2/build_ssse3' cd /build/scrappie-1.4.2/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_unittest.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_unittest.dir/depend.internal". Scanning dependencies of target scrappie_unittest make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie.dir/depend.internal". make[4]: Entering directory '/build/scrappie-1.4.2/build_ssse3' Scanning dependencies of target scrappie make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_ssse3' [ 36%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -c /build/scrappie-1.4.2/src/test/test_map_to_sequence.c [ 39%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o [ 42%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -c /build/scrappie-1.4.2/src/test/scrappie_test_runner.c [ 44%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_util.c [ 47%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -c /build/scrappie-1.4.2/src/test/scrappie_util.c /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -c /build/scrappie-1.4.2/src/test/test_skeleton.c [ 50%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o [ 52%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie.c.o -c /build/scrappie-1.4.2/src/scrappie.c /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/scrappie-1.4.2/src/scrappie_events.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /build/scrappie-1.4.2/src/test/scrappie_util.c:4: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 55%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o [ 57%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_decoding.c [ 60%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /build/scrappie-1.4.2/src/scrappie_mappy.c [ 63%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from /usr/include/simde/simde-common.h:39, from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /build/scrappie-1.4.2/src/scrappie_matrix.h:6, from /build/scrappie-1.4.2/src/test/scrappie_util.h:4, from /build/scrappie-1.4.2/src/test/test_scrappie_util.c:6: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 65%] Building C object CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -c /build/scrappie-1.4.2/src/scrappie_squiggle.c /usr/bin/cc 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CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm [100%] Linking C executable scrappie_unittest /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o 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[ 50%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o [ 52%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie.c.o -c /build/scrappie-1.4.2/src/scrappie.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_util.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -c /build/scrappie-1.4.2/src/scrappie_raw.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -c /build/scrappie-1.4.2/src/test/scrappie_util.c [ 55%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/scrappie-1.4.2/src/scrappie_events.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_convolution.c [ 57%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /build/scrappie-1.4.2/src/test/scrappie_util.c:4: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /build/scrappie-1.4.2/src/scrappie_mappy.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from /usr/include/simde/simde-common.h:39, from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /build/scrappie-1.4.2/src/scrappie_matrix.h:6, from /build/scrappie-1.4.2/src/test/scrappie_util.h:4, from /build/scrappie-1.4.2/src/test/test_scrappie_util.c:6: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 60%] Building C object CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -c /build/scrappie-1.4.2/src/scrappie_seqmappy.c [ 63%] Building C object CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. 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/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_signal.c [ 92%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o -c 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Scanning dependencies of target test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse2' make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_sse2' [ 2%] Building C object CMakeFiles/test_interface.dir/src/test_interface.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/test_interface.dir/src/test_interface.c.o -c /build/scrappie-1.4.2/src/test_interface.c Scanning dependencies of target scrappie_objects make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse2' make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_sse2' [ 5%] Building C object 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CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse2' [ 97%] Built target scrappie [100%] Linking C executable scrappie_unittest /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic 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Scanning dependencies of target test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' [ 2%] Building C object CMakeFiles/test_interface.dir/src/test_interface.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/test_interface.dir/src/test_interface.c.o -c /build/scrappie-1.4.2/src/test_interface.c Scanning dependencies of target scrappie_objects make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' [ 5%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/decode.c.o -c /build/scrappie-1.4.2/src/decode.c [ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -c /build/scrappie-1.4.2/src/event_detection.c [ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o [ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c /build/scrappie-1.4.2/src/layers.c /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/networks.c.o -c /build/scrappie-1.4.2/src/networks.c [ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/scrappie-1.4.2/src/nnfeatures.c [ 18%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o [ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /build/scrappie-1.4.2/src/scrappie_common.c /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP 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-o CMakeFiles/scrappie_objects.dir/src/util.c.o -c /build/scrappie-1.4.2/src/util.c [ 28%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/scrappie-1.4.2/src/homopolymer.c [ 31%] Linking C executable test_interface /usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_interface.dir/src/test_interface.c.o -o test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' [ 31%] Built target test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' [ 31%] Built target scrappie_objects make -f CMakeFiles/scrappie_static.dir/build.make CMakeFiles/scrappie_static.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' cd /build/scrappie-1.4.2/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_static.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_static.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_static.dir/depend.internal". 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Scanning dependencies of target scrappie_static make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' make -f CMakeFiles/scrappie_static.dir/build.make CMakeFiles/scrappie_static.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' [ 34%] Linking C static library libscrappie.a /usr/bin/cmake -P CMakeFiles/scrappie_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_static.dir/link.txt --verbose=1 /usr/bin/ar qc libscrappie.a CMakeFiles/scrappie_objects.dir/src/decode.c.o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o CMakeFiles/scrappie_objects.dir/src/layers.c.o CMakeFiles/scrappie_objects.dir/src/networks.c.o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o CMakeFiles/scrappie_objects.dir/src/util.c.o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/ranlib libscrappie.a make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' [ 34%] Built target scrappie_static make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/depend make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' cd /build/scrappie-1.4.2/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' cd /build/scrappie-1.4.2/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie.dir/depend.internal". 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Scanning dependencies of target scrappie Scanning dependencies of target scrappie_unittest make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' [ 36%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -c /build/scrappie-1.4.2/src/test/test_map_to_sequence.c [ 44%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -c /build/scrappie-1.4.2/src/scrappie_raw.c [ 47%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o [ 50%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o [ 52%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_convolution.c [ 55%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -c /build/scrappie-1.4.2/src/test/scrappie_util.c [ 57%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie.c.o -c /build/scrappie-1.4.2/src/scrappie.c [ 60%] Building C object CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from /usr/include/simde/simde-common.h:39, from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /build/scrappie-1.4.2/src/scrappie_matrix.h:6, from /build/scrappie-1.4.2/src/test/scrappie_util.h:4, from /build/scrappie-1.4.2/src/test/test_scrappie_util.c:6: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 63%] Building C object CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/scrappie-1.4.2/src/scrappie_events.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /build/scrappie-1.4.2/src/test/scrappie_util.c:4: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /build/scrappie-1.4.2/src/scrappie_mappy.c /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -c /build/scrappie-1.4.2/src/scrappie_seqmappy.c [ 65%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o [ 68%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -c /build/scrappie-1.4.2/src/scrappie_squiggle.c /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -c /build/scrappie-1.4.2/src/test/test_skeleton.c /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_decoding.c [ 71%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_elu.c [ 73%] Building C object CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -c /build/scrappie-1.4.2/src/scrappie_subcommands.c [ 76%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_event_detection.c [ 78%] Building C object CMakeFiles/scrappie.dir/src/scrappie_help.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_help.c.o -c /build/scrappie-1.4.2/src/scrappie_help.c [ 81%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_matrix.c [ 84%] Building C object CMakeFiles/scrappie.dir/src/fast5_interface.c.o [ 86%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_signal.c /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/fast5_interface.c.o -c /build/scrappie-1.4.2/src/fast5_interface.c [ 89%] Building C object CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -c /build/scrappie-1.4.2/src/scrappie_event_table.c [ 92%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_squiggle.c [ 94%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -c /build/scrappie-1.4.2/src/test/test_util.c [ 97%] Linking C executable scrappie_unittest /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit [100%] Linking C executable scrappie /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie.dir/src/scrappie.c.o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' [100%] Built target scrappie_unittest make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' [100%] Built target scrappie make[3]: Leaving directory '/build/scrappie-1.4.2/build_plain' /usr/bin/cmake -E cmake_progress_start /build/scrappie-1.4.2/build_plain/CMakeFiles 0 make[2]: Leaving directory '/build/scrappie-1.4.2/build_plain' make[1]: Leaving directory '/build/scrappie-1.4.2' rm -f debian/scrappie.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/scrappie-1.4.2' for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2 ; do \ dh_auto_test --builddirectory build_${SIMD} ; \ done cd build_avx2 && make -j15 test ARGS\+=-j15 make[2]: Entering directory '/build/scrappie-1.4.2/build_avx2' Running tests... /usr/bin/ctest --force-new-ctest-process -j15 Test project /build/scrappie-1.4.2/build_avx2 Start 1: unittest Start 2: test_events_call Start 3: test_raw_call Start 4: test_rawrgrgr_r94_call Start 5: test_rawrgrgr_r941_call Start 6: test_rawrgrgr_r10_call Start 7: test_rawrnnrf_r94_call Start 8: test_event_table Start 9: test_mappy Start 10: test_seqmappy Start 11: test_squiggle_r94 Start 12: test_squiggle_r10 Start 13: test_licence Start 14: test_help Start 15: test_help_events 1/19 Test #1: unittest .........................***Exception: Illegal 0.50 sec CUnit - A unit testing framework for C - Version 2.1-3 http://cunit.sourceforge.net/ Suite: Skeleton set of tests for modification Test: Skeleton test doing no-op ...passed Suite: Scrappie matrix IO tests Test: Reading scrappie_matrix from file ...passed Test: Writing scrappie_matrix to file ...passed Test: Round-trip scrappie_matrix to / from file ...passed Test: Copy scrappie_matrix ...passed Test: Round-trip scrappie_matrix to / from array ...passed Suite: Convolution layer Test: Simple stride 1 ...passed Test: Simple stride 2 ...passed Test: Simple stride 3 ...passed Test: Simple stride 4 ...passed Test: Simple stride 5 ...passed Test: Simple convolution, unit filter length 1 ...passed Test: Simple convolution, unit filter length 2 ...passed Test: Simple stride 1 ...passed Test: Simple stride 2 ...passed Test: Simple stride 3 ...passed Test: Simple stride 4 ...passed Test: Simple stride 5 ...passed Test: Simple convolution, unit filter length 1 ...passed Test: Simple convolution, unit filter length 2 ...passed Test: Simple convolution, unit filter length 3 ...passed Test: Simple convolution, unit filter length 4 ...passed Test: Simple convolution, unit filter length 5 ...passed Test: Simple convolution, antisymmetric filter length 3 ...passed Test: Scrappie convolution, antisymmetric filter length 3 ... Start 16: test_help_event_table 2/19 Test #14: test_help ........................ Passed 0.15 sec Start 17: test_help_raw 3/19 Test #15: test_help_events ................. Passed 0.16 sec Start 18: test_help_squiggle 4/19 Test #13: test_licence ..................... Passed 0.26 sec Start 19: test_version 5/19 Test #16: test_help_event_table ............ Passed 0.12 sec 6/19 Test #17: test_help_raw .................... Passed 0.10 sec 7/19 Test #18: test_help_squiggle ............... Passed 0.08 sec 8/19 Test #19: test_version ..................... Passed 0.08 sec 9/19 Test #5: test_rawrgrgr_r941_call ..........***Exception: Illegal 0.83 sec 10/19 Test #6: test_rawrgrgr_r10_call ...........***Exception: Illegal 0.82 sec 11/19 Test #7: test_rawrnnrf_r94_call ...........***Exception: Illegal 0.80 sec 12/19 Test #2: test_events_call .................***Exception: Illegal 0.95 sec 13/19 Test #3: test_raw_call ....................***Exception: Illegal 0.94 sec 14/19 Test #4: test_rawrgrgr_r94_call ...........***Exception: Illegal 0.89 sec 15/19 Test #10: test_seqmappy ....................***Exception: Illegal 0.75 sec 16/19 Test #9: test_mappy .......................***Exception: Illegal 0.77 sec 17/19 Test #8: test_event_table .................***Exception: Illegal 0.81 sec 18/19 Test #11: test_squiggle_r94 ................ Passed 2.39 sec 19/19 Test #12: test_squiggle_r10 ................ Passed 2.86 sec 47% tests passed, 10 tests failed out of 19 Total Test time (real) = 3.50 sec The following tests FAILED: 1 - unittest (ILLEGAL) 2 - test_events_call (ILLEGAL) 3 - test_raw_call (ILLEGAL) 4 - test_rawrgrgr_r94_call (ILLEGAL) 5 - test_rawrgrgr_r941_call (ILLEGAL) 6 - test_rawrgrgr_r10_call (ILLEGAL) 7 - test_rawrnnrf_r94_call (ILLEGAL) 8 - test_event_table (ILLEGAL) 9 - test_mappy (ILLEGAL) 10 - test_seqmappy (ILLEGAL) Errors while running CTest make[2]: *** [Makefile:152: test] Error 8 make[2]: Leaving directory '/build/scrappie-1.4.2/build_avx2' rm -fr -- /tmp/dh-xdg-rundir-niHn6T59 dh_auto_test: error: cd build_avx2 && make -j15 test ARGS\+=-j15 returned exit code 2 cd build_avx && make -j15 test ARGS\+=-j15 make[2]: Entering directory '/build/scrappie-1.4.2/build_avx' Running tests... /usr/bin/ctest --force-new-ctest-process -j15 Test project /build/scrappie-1.4.2/build_avx Start 1: unittest Start 2: test_events_call Start 3: test_raw_call Start 4: test_rawrgrgr_r94_call Start 5: test_rawrgrgr_r941_call Start 6: test_rawrgrgr_r10_call Start 7: test_rawrnnrf_r94_call Start 8: test_event_table Start 9: test_mappy Start 10: test_seqmappy Start 11: test_squiggle_r94 Start 12: test_squiggle_r10 Start 13: test_licence Start 14: test_help Start 15: test_help_events 1/19 Test #14: test_help ........................ Passed 0.14 sec Start 16: test_help_event_table 2/19 Test #13: test_licence ..................... Passed 0.22 sec Start 17: test_help_raw 3/19 Test #15: test_help_events ................. Passed 0.19 sec Start 18: test_help_squiggle 4/19 Test #17: test_help_raw .................... Passed 0.16 sec Start 19: test_version 5/19 Test #16: test_help_event_table ............ Passed 0.32 sec 6/19 Test #18: test_help_squiggle ............... Passed 0.23 sec 7/19 Test #8: test_event_table ................. Passed 0.65 sec 8/19 Test #19: test_version ..................... Passed 0.22 sec 9/19 Test #12: test_squiggle_r10 ................ Passed 2.23 sec 10/19 Test #11: test_squiggle_r94 ................ Passed 2.58 sec 11/19 Test #10: test_seqmappy .................... Passed 49.48 sec 12/19 Test #1: unittest ......................... Passed 101.93 sec 13/19 Test #3: test_raw_call .................... Passed 125.14 sec 14/19 Test #2: test_events_call ................. Passed 127.53 sec 15/19 Test #4: test_rawrgrgr_r94_call ........... Passed 166.26 sec 16/19 Test #5: test_rawrgrgr_r941_call .......... Passed 167.00 sec 17/19 Test #9: test_mappy ....................... Passed 175.58 sec 18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 176.88 sec 19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 1087.31 sec 100% tests passed, 0 tests failed out of 19 Total Test time (real) = 1087.53 sec make[2]: Leaving directory '/build/scrappie-1.4.2/build_avx' rm -fr -- /tmp/dh-xdg-rundir-KdbFto23 cd build_sse4.1 && make -j15 test ARGS\+=-j15 make[2]: Entering directory '/build/scrappie-1.4.2/build_sse4.1' Running tests... /usr/bin/ctest --force-new-ctest-process -j15 Test project /build/scrappie-1.4.2/build_sse4.1 Start 1: unittest Start 2: test_events_call Start 3: test_raw_call Start 4: test_rawrgrgr_r94_call Start 5: test_rawrgrgr_r941_call Start 6: test_rawrgrgr_r10_call Start 7: test_rawrnnrf_r94_call Start 8: test_event_table Start 9: test_mappy Start 10: test_seqmappy Start 11: test_squiggle_r94 Start 12: test_squiggle_r10 Start 13: test_licence Start 14: test_help Start 15: test_help_events 1/19 Test #13: test_licence ..................... Passed 0.15 sec Start 16: test_help_event_table 2/19 Test #14: test_help ........................ Passed 0.36 sec Start 17: test_help_raw 3/19 Test #8: test_event_table ................. Passed 0.60 sec Start 18: test_help_squiggle 4/19 Test #15: test_help_events ................. Passed 0.40 sec Start 19: test_version 5/19 Test #16: test_help_event_table ............ Passed 0.33 sec 6/19 Test #19: test_version ..................... Passed 0.07 sec 7/19 Test #18: test_help_squiggle ............... Passed 0.12 sec 8/19 Test #17: test_help_raw .................... Passed 0.18 sec 9/19 Test #12: test_squiggle_r10 ................ Passed 2.38 sec 10/19 Test #11: test_squiggle_r94 ................ Passed 2.96 sec 11/19 Test #1: unittest ......................... Passed 58.98 sec 12/19 Test #10: test_seqmappy .................... Passed 94.52 sec 13/19 Test #2: test_events_call ................. Passed 110.04 sec 14/19 Test #3: test_raw_call .................... Passed 140.55 sec 15/19 Test #4: test_rawrgrgr_r94_call ........... Passed 141.85 sec 16/19 Test #5: test_rawrgrgr_r941_call .......... Passed 158.13 sec 17/19 Test #6: test_rawrgrgr_r10_call ........... Passed 197.89 sec 18/19 Test #9: test_mappy ....................... Passed 229.14 sec 19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 294.70 sec 100% tests passed, 0 tests failed out of 19 Total Test time (real) = 294.83 sec make[2]: Leaving directory '/build/scrappie-1.4.2/build_sse4.1' rm -fr -- /tmp/dh-xdg-rundir-18lvAA3v cd build_ssse3 && make -j15 test ARGS\+=-j15 make[2]: Entering directory '/build/scrappie-1.4.2/build_ssse3' Running tests... /usr/bin/ctest --force-new-ctest-process -j15 Test project /build/scrappie-1.4.2/build_ssse3 Start 1: unittest Start 2: test_events_call Start 3: test_raw_call Start 4: test_rawrgrgr_r94_call Start 5: test_rawrgrgr_r941_call Start 6: test_rawrgrgr_r10_call Start 7: test_rawrnnrf_r94_call Start 8: test_event_table Start 9: test_mappy Start 10: test_seqmappy Start 11: test_squiggle_r94 Start 12: test_squiggle_r10 Start 13: test_licence Start 14: test_help Start 15: test_help_events 1/19 Test #13: test_licence ..................... Passed 0.07 sec Start 16: test_help_event_table 2/19 Test #15: test_help_events ................. Passed 0.08 sec Start 17: test_help_raw 3/19 Test #14: test_help ........................ Passed 0.11 sec Start 18: test_help_squiggle 4/19 Test #17: test_help_raw .................... Passed 0.09 sec Start 19: test_version 5/19 Test #16: test_help_event_table ............ Passed 0.16 sec 6/19 Test #18: test_help_squiggle ............... Passed 0.13 sec 7/19 Test #19: test_version ..................... Passed 0.15 sec 8/19 Test #8: test_event_table ................. Passed 0.40 sec 9/19 Test #11: test_squiggle_r94 ................ Passed 1.62 sec 10/19 Test #12: test_squiggle_r10 ................ Passed 1.76 sec 11/19 Test #1: unittest ......................... Passed 35.54 sec 12/19 Test #10: test_seqmappy .................... Passed 52.94 sec 13/19 Test #3: test_raw_call .................... Passed 213.38 sec 14/19 Test #4: test_rawrgrgr_r94_call ........... Passed 217.36 sec 15/19 Test #2: test_events_call ................. Passed 217.94 sec 16/19 Test #5: test_rawrgrgr_r941_call .......... Passed 257.01 sec 17/19 Test #9: test_mappy ....................... Passed 331.62 sec 18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 567.58 sec 19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 1214.65 sec 100% tests passed, 0 tests failed out of 19 Total Test time (real) = 1214.75 sec make[2]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' rm -fr -- /tmp/dh-xdg-rundir-K_WNqSEK cd build_sse3 && make -j15 test ARGS\+=-j15 make[2]: Entering directory '/build/scrappie-1.4.2/build_sse3' Running tests... /usr/bin/ctest --force-new-ctest-process -j15 Test project /build/scrappie-1.4.2/build_sse3 Start 1: unittest Start 2: test_events_call Start 3: test_raw_call Start 4: test_rawrgrgr_r94_call Start 5: test_rawrgrgr_r941_call Start 6: test_rawrgrgr_r10_call Start 7: test_rawrnnrf_r94_call Start 8: test_event_table Start 9: test_mappy Start 10: test_seqmappy Start 11: test_squiggle_r94 Start 12: test_squiggle_r10 Start 13: test_licence Start 14: test_help Start 15: test_help_events 1/19 Test #13: test_licence ..................... Passed 0.14 sec Start 16: test_help_event_table 2/19 Test #14: test_help ........................ Passed 0.14 sec Start 17: test_help_raw 3/19 Test #15: test_help_events ................. Passed 0.17 sec Start 18: test_help_squiggle 4/19 Test #16: test_help_event_table ............ Passed 0.17 sec Start 19: test_version 5/19 Test #17: test_help_raw .................... Passed 0.18 sec 6/19 Test #18: test_help_squiggle ............... Passed 0.14 sec 7/19 Test #19: test_version ..................... Passed 0.21 sec 8/19 Test #8: test_event_table ................. Passed 0.75 sec 9/19 Test #12: test_squiggle_r10 ................ Passed 2.32 sec 10/19 Test #11: test_squiggle_r94 ................ Passed 2.64 sec 11/19 Test #1: unittest ......................... Passed 88.84 sec 12/19 Test #2: test_events_call ................. Passed 129.83 sec 13/19 Test #10: test_seqmappy .................... Passed 133.31 sec 14/19 Test #4: test_rawrgrgr_r94_call ........... Passed 167.59 sec 15/19 Test #3: test_raw_call .................... Passed 168.13 sec 16/19 Test #5: test_rawrgrgr_r941_call .......... Passed 168.47 sec 17/19 Test #9: test_mappy ....................... Passed 178.68 sec 18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 420.89 sec 19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 556.39 sec 100% tests passed, 0 tests failed out of 19 Total Test time (real) = 556.54 sec make[2]: Leaving directory '/build/scrappie-1.4.2/build_sse3' rm -fr -- /tmp/dh-xdg-rundir-rmtx5ttO cd build_sse2 && make -j15 test ARGS\+=-j15 make[2]: Entering directory '/build/scrappie-1.4.2/build_sse2' Running tests... /usr/bin/ctest --force-new-ctest-process -j15 Test project /build/scrappie-1.4.2/build_sse2 Start 1: unittest Start 2: test_events_call Start 3: test_raw_call Start 4: test_rawrgrgr_r94_call Start 5: test_rawrgrgr_r941_call Start 6: test_rawrgrgr_r10_call Start 7: test_rawrnnrf_r94_call Start 8: test_event_table Start 9: test_mappy Start 10: test_seqmappy Start 11: test_squiggle_r94 Start 12: test_squiggle_r10 Start 13: test_licence Start 14: test_help Start 15: test_help_events 1/19 Test #13: test_licence ..................... Passed 0.06 sec Start 16: test_help_event_table 2/19 Test #14: test_help ........................ Passed 0.09 sec Start 17: test_help_raw 3/19 Test #15: test_help_events ................. Passed 0.12 sec Start 18: test_help_squiggle 4/19 Test #16: test_help_event_table ............ Passed 0.12 sec Start 19: test_version 5/19 Test #17: test_help_raw .................... Passed 0.15 sec 6/19 Test #19: test_version ..................... Passed 0.07 sec 7/19 Test #18: test_help_squiggle ............... Passed 0.15 sec 8/19 Test #8: test_event_table ................. Passed 0.51 sec 9/19 Test #11: test_squiggle_r94 ................ Passed 1.05 sec 10/19 Test #12: test_squiggle_r10 ................ Passed 1.23 sec 11/19 Test #10: test_seqmappy .................... Passed 34.53 sec 12/19 Test #2: test_events_call ................. Passed 42.64 sec 13/19 Test #3: test_raw_call .................... Passed 62.82 sec 14/19 Test #1: unittest ......................... Passed 65.34 sec 15/19 Test #9: test_mappy ....................... Passed 69.80 sec 16/19 Test #4: test_rawrgrgr_r94_call ........... Passed 80.10 sec 17/19 Test #5: test_rawrgrgr_r941_call .......... Passed 98.58 sec 18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 126.26 sec 19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 475.90 sec 100% tests passed, 0 tests failed out of 19 Total Test time (real) = 475.92 sec make[2]: Leaving directory '/build/scrappie-1.4.2/build_sse2' rm -fr -- /tmp/dh-xdg-rundir-Qgt0axni dh_auto_test --builddirectory build_plain cd build_plain && make -j15 test ARGS\+=-j15 make[2]: Entering directory '/build/scrappie-1.4.2/build_plain' Running tests... /usr/bin/ctest --force-new-ctest-process -j15 Test project /build/scrappie-1.4.2/build_plain Start 1: unittest Start 2: test_events_call Start 3: test_raw_call Start 4: test_rawrgrgr_r94_call Start 5: test_rawrgrgr_r941_call Start 6: test_rawrgrgr_r10_call Start 7: test_rawrnnrf_r94_call Start 8: test_event_table Start 9: test_mappy Start 10: test_seqmappy Start 11: test_squiggle_r94 Start 12: test_squiggle_r10 Start 13: test_licence Start 14: test_help Start 15: test_help_events 1/19 Test #14: test_help ........................ Passed 0.06 sec Start 16: test_help_event_table 2/19 Test #15: test_help_events ................. Passed 0.10 sec Start 17: test_help_raw 3/19 Test #13: test_licence ..................... Passed 0.14 sec Start 18: test_help_squiggle 4/19 Test #16: test_help_event_table ............ Passed 0.12 sec Start 19: test_version 5/19 Test #17: test_help_raw .................... Passed 0.08 sec 6/19 Test #18: test_help_squiggle ............... Passed 0.07 sec 7/19 Test #19: test_version ..................... Passed 0.08 sec 8/19 Test #8: test_event_table ................. Passed 0.49 sec 9/19 Test #12: test_squiggle_r10 ................ Passed 0.96 sec 10/19 Test #11: test_squiggle_r94 ................ Passed 1.06 sec 11/19 Test #10: test_seqmappy .................... Passed 24.59 sec 12/19 Test #1: unittest ......................... Passed 65.36 sec 13/19 Test #3: test_raw_call .................... Passed 77.82 sec 14/19 Test #9: test_mappy ....................... Passed 78.74 sec 15/19 Test #2: test_events_call ................. Passed 80.02 sec 16/19 Test #4: test_rawrgrgr_r94_call ........... Passed 129.63 sec 17/19 Test #6: test_rawrgrgr_r10_call ........... Passed 135.71 sec 18/19 Test #5: test_rawrgrgr_r941_call .......... Passed 183.07 sec 19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 432.36 sec 100% tests passed, 0 tests failed out of 19 Total Test time (real) = 432.59 sec make[2]: Leaving directory '/build/scrappie-1.4.2/build_plain' rm -fr -- /tmp/dh-xdg-rundir-SvKBkNea make[1]: Leaving directory '/build/scrappie-1.4.2' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake rm -f -- debian/scrappie.substvars rm -fr -- debian/.debhelper/generated/scrappie/ debian/scrappie/ debian/tmp/ rm -f debian/scrappie.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/scrappie-1.4.2' dh_install debian/bin/simd-dispatch /usr/lib// install -d debian/scrappie//usr/lib// cp --reflink=auto -a ./debian/bin/simd-dispatch debian/scrappie//usr/lib/// install -d debian/.debhelper/generated/scrappie for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2 ; do \ dh_auto_install --builddirectory build_${SIMD} ; \ done cd build_avx2 && make -j15 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-1.4.2/build_avx2' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/scrappie-1.4.2/build_avx2' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/scrappie-1.4.2/build_avx2' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/bin/scrappie -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/scrappie-1.4.2/build_avx2' cd build_avx && make -j15 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-1.4.2/build_avx' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/scrappie-1.4.2/build_avx' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/scrappie-1.4.2/build_avx' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/bin/scrappie -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/scrappie-1.4.2/build_avx' cd build_sse4.1 && make -j15 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-1.4.2/build_sse4.1' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/scrappie-1.4.2/build_sse4.1' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/scrappie-1.4.2/build_sse4.1' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/bin/scrappie -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/scrappie-1.4.2/build_sse4.1' cd build_ssse3 && make -j15 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-1.4.2/build_ssse3' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/scrappie-1.4.2/build_ssse3' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/bin/scrappie -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' cd build_sse3 && make -j15 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-1.4.2/build_sse3' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/scrappie-1.4.2/build_sse3' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/scrappie-1.4.2/build_sse3' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/bin/scrappie -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/scrappie-1.4.2/build_sse3' cd build_sse2 && make -j15 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-1.4.2/build_sse2' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_sse2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/scrappie-1.4.2/build_sse2' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/scrappie-1.4.2/build_sse2' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/bin/scrappie -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/scrappie-1.4.2/build_sse2' dh_install debian/bin/simd-dispatch /usr/lib/ cp --reflink=auto -a ./debian/bin/simd-dispatch debian/scrappie//usr/lib// dh_install build_*/scrappie-* /usr/bin// cp --reflink=auto -a ./build_avx/scrappie-avx ./build_avx2/scrappie-avx2 ./build_plain/scrappie-plain ./build_sse2/scrappie-sse2 ./build_sse3/scrappie-sse3 ./build_sse4.1/scrappie-sse4.1 ./build_ssse3/scrappie-ssse3 debian/scrappie//usr/bin/// cd /build/scrappie-1.4.2/debian/scrappie/usr/bin && \ rm -rf scrappie && ln -s ../lib//simd-dispatch scrappie make[1]: Leaving directory '/build/scrappie-1.4.2' dh_installdocs -O--buildsystem=cmake install -d debian/scrappie/usr/share/doc/scrappie install -p -m0644 debian/copyright debian/scrappie/usr/share/doc/scrappie/copyright dh_installchangelogs -O--buildsystem=cmake install -p -m0644 debian/changelog debian/scrappie/usr/share/doc/scrappie/changelog.Debian dh_installman -O--buildsystem=cmake install -d debian/scrappie/usr/share/man/man1/ install -p -m0644 ./debian/scrappie.1 debian/scrappie/usr/share/man/man1/scrappie.1 man-recode --to-code UTF-8 --suffix .dh-new debian/scrappie/usr/share/man/man1/scrappie.1 mv debian/scrappie/usr/share/man/man1/scrappie.1.dh-new debian/scrappie/usr/share/man/man1/scrappie.1 chmod 0644 -- debian/scrappie/usr/share/man/man1/scrappie.1 dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake install -d debian/scrappie/usr/share/lintian/overrides install -p -m0644 debian/lintian-overrides debian/scrappie/usr/share/lintian/overrides/scrappie dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake rm -f debian/scrappie/usr/bin/scrappie ln -s ../lib/simd-dispatch debian/scrappie/usr/bin/scrappie dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake cd debian/scrappie chmod a-x usr/share/doc/scrappie/changelog.Debian usr/share/man/man1/scrappie.1 gzip -9nf usr/share/doc/scrappie/changelog.Debian usr/share/man/man1/scrappie.1 cd '/build/scrappie-1.4.2' dh_fixperms -O--buildsystem=cmake find debian/scrappie ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/scrappie/usr/share/doc -type f -a -true -a ! -regex 'debian/scrappie/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/scrappie/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/scrappie/usr/share/man debian/scrappie/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/scrappie -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/scrappie/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/scrappie/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake install -d debian/scrappie/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/scrappie/usr/lib/debug/.dwz/x86_64-linux-gnu/scrappie.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/scrappie.debug -- debian/scrappie/usr/bin/scrappie-avx debian/scrappie/usr/bin/scrappie-avx2 debian/scrappie/usr/bin/scrappie-plain debian/scrappie/usr/bin/scrappie-sse2 debian/scrappie/usr/bin/scrappie-sse3 debian/scrappie/usr/bin/scrappie-sse4.1 debian/scrappie/usr/bin/scrappie-ssse3 objcopy --compress-debug-sections debian/scrappie/usr/lib/debug/.dwz/x86_64-linux-gnu/scrappie.debug dh_strip -a -O--buildsystem=cmake install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/92 objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-ssse3 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/92/8a3eb8d535e8c72125301cb42f9c1f660ec638.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/92/8a3eb8d535e8c72125301cb42f9c1f660ec638.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-ssse3 objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/92/8a3eb8d535e8c72125301cb42f9c1f660ec638.debug debian/scrappie/usr/bin/scrappie-ssse3 install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/86 objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-sse4.1 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/86/fc1dce0fe3f09c5e10ad8ac34967eaa54f1b17.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/86/fc1dce0fe3f09c5e10ad8ac34967eaa54f1b17.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-sse4.1 objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/86/fc1dce0fe3f09c5e10ad8ac34967eaa54f1b17.debug debian/scrappie/usr/bin/scrappie-sse4.1 install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/31 objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-sse3 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/31/42a1f1b8a618dbc24a42c7de8a77fe93f4dbb0.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/31/42a1f1b8a618dbc24a42c7de8a77fe93f4dbb0.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-sse3 objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/31/42a1f1b8a618dbc24a42c7de8a77fe93f4dbb0.debug debian/scrappie/usr/bin/scrappie-sse3 install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/a6 objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-sse2 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/a6/0f98dd7f50b93979cf73a456e22c09e7cf6b8b.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/a6/0f98dd7f50b93979cf73a456e22c09e7cf6b8b.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-sse2 objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/a6/0f98dd7f50b93979cf73a456e22c09e7cf6b8b.debug debian/scrappie/usr/bin/scrappie-sse2 install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/7d objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-plain debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/7d/76d8cc58b37cb4a902014476d68a82f78f2b09.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/7d/76d8cc58b37cb4a902014476d68a82f78f2b09.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-plain objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/7d/76d8cc58b37cb4a902014476d68a82f78f2b09.debug debian/scrappie/usr/bin/scrappie-plain install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/f6 objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-avx2 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/f6/b085dbbaea3b6d7477d15d6034e41c3723d2cd.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/f6/b085dbbaea3b6d7477d15d6034e41c3723d2cd.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-avx2 objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/f6/b085dbbaea3b6d7477d15d6034e41c3723d2cd.debug debian/scrappie/usr/bin/scrappie-avx2 install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/74 objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-avx debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/74/ab781b1e1e01749081d3acf89ad8e3e38422cf.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/74/ab781b1e1e01749081d3acf89ad8e3e38422cf.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-avx objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/74/ab781b1e1e01749081d3acf89ad8e3e38422cf.debug debian/scrappie/usr/bin/scrappie-avx strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/scrappie/usr/lib/libscrappie.a install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/scrappie/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/scrappie/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/scrappie/usr/lib/debug install -d debian/.debhelper/scrappie/dbgsym-root/usr/share/doc ln -s scrappie debian/.debhelper/scrappie/dbgsym-root/usr/share/doc/scrappie-dbgsym dh_makeshlibs -a -O--buildsystem=cmake rm -f debian/scrappie/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=cmake install -d debian/scrappie/DEBIAN dpkg-shlibdeps -Tdebian/scrappie.substvars debian/scrappie/usr/bin/scrappie-avx debian/scrappie/usr/bin/scrappie-avx2 debian/scrappie/usr/bin/scrappie-plain debian/scrappie/usr/bin/scrappie-sse2 debian/scrappie/usr/bin/scrappie-sse3 debian/scrappie/usr/bin/scrappie-sse4.1 debian/scrappie/usr/bin/scrappie-ssse3 dh_installdeb -O--buildsystem=cmake rm -f debian/scrappie.debhelper.log debian/rules override_dh_gencontrol make[1]: Entering directory '/build/scrappie-1.4.2' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.2-4), " echo misc:Depends= >> debian/scrappie.substvars echo misc:Pre-Depends= >> debian/scrappie.substvars install -d debian/.debhelper/scrappie/dbgsym-root/DEBIAN dpkg-gencontrol -pscrappie -ldebian/changelog -Tdebian/scrappie.substvars -Pdebian/.debhelper/scrappie/dbgsym-root "-Vsimde:Built-Using=simde (= 0.7.2-4), " -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=scrappie-dbgsym "-DDepends=scrappie (= \${binary:Version})" "-DDescription=debug symbols for scrappie" "-DBuild-Ids=3142a1f1b8a618dbc24a42c7de8a77fe93f4dbb0 74ab781b1e1e01749081d3acf89ad8e3e38422cf 7d76d8cc58b37cb4a902014476d68a82f78f2b09 86fc1dce0fe3f09c5e10ad8ac34967eaa54f1b17 928a3eb8d535e8c72125301cb42f9c1f660ec638 a60f98dd7f50b93979cf73a456e22c09e7cf6b8b f6b085dbbaea3b6d7477d15d6034e41c3723d2cd" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/DEBIAN/control dpkg-gencontrol -pscrappie -ldebian/changelog -Tdebian/scrappie.substvars -Pdebian/scrappie "-Vsimde:Built-Using=simde (= 0.7.2-4), " chmod 0644 -- debian/scrappie/DEBIAN/control make[1]: Leaving directory '/build/scrappie-1.4.2' dh_md5sums -O--buildsystem=cmake cd debian/scrappie >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/scrappie/DEBIAN/md5sums cd debian/.debhelper/scrappie/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=cmake dpkg-deb --root-owner-group --build debian/.debhelper/scrappie/dbgsym-root .. dpkg-deb --root-owner-group --build debian/scrappie .. dpkg-deb: building package 'scrappie-dbgsym' in '../scrappie-dbgsym_1.4.2-7_amd64.deb'. dpkg-deb: building package 'scrappie' in '../scrappie_1.4.2-7_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../scrappie_1.4.2-7_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/4179147/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/4179147/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4179147 and its subdirectories I: Current time: Mon Jan 10 23:03:43 +14 2022 I: pbuilder-time-stamp: 1641805423