I: pbuilder: network access will be disabled during build I: Current time: Thu Feb 2 21:36:06 +14 2023 I: pbuilder-time-stamp: 1675323366 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [obitools_1.2.13+dfsg-3.dsc] I: copying [./obitools_1.2.13+dfsg.orig.tar.xz] I: copying [./obitools_1.2.13+dfsg-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig._IniYGD7/trustedkeys.kbx': General error gpgv: Signature made Sat Mar 7 21:02:19 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./obitools_1.2.13+dfsg-3.dsc dpkg-source: info: extracting obitools in obitools-1.2.13+dfsg dpkg-source: info: unpacking obitools_1.2.13+dfsg.orig.tar.xz dpkg-source: info: unpacking obitools_1.2.13+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_libs dpkg-source: info: applying fix_path_interpreter dpkg-source: info: applying 2to3.patch dpkg-source: info: applying port_python3.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3572127/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3572127/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3572127/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=75b2845f40ac4dfe841a05e4ba77af72 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3572127 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.7X16cRJjeS/pbuilderrc_YI1f --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.7X16cRJjeS/b2 --logfile b2/build.log obitools_1.2.13+dfsg-3.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 5 2021 bash -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash -rwxr-xr-x 1 root root 113664 Sep 24 2020 date -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd -rwxr-xr-x 1 root root 93936 Sep 24 2020 df -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir -rwxr-xr-x 1 root root 84440 Jul 29 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 24 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 29 2021 findmnt -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 3 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln -rwxr-xr-x 1 root root 56952 Feb 8 2020 login -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls -rwxr-xr-x 1 root root 149736 Jul 29 2021 lsblk -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 29 2021 more -rwsr-xr-x 1 root root 55528 Jul 29 2021 mount -rwxr-xr-x 1 root root 18664 Jul 29 2021 mountpoint -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd lrwxrwxrwx 1 root root 4 Aug 5 2021 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Feb 2 21:36 sh -> bash lrwxrwxrwx 1 root root 4 Jan 24 05:47 sh.distrib -> dash -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty -rwsr-xr-x 1 root root 71912 Jul 29 2021 su -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch -rwxr-xr-x 1 root root 39680 Sep 24 2020 true -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 29 2021 umount -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 29 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew I: user script /srv/workspace/pbuilder/3572127/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-python, python3-dev, python3-sphinx, cython3, ipython3, python3-wheel, python3-virtualenv dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on ipython3; however: Package ipython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-wheel; however: Package python3-wheel is not installed. pbuilder-satisfydepends-dummy depends on python3-virtualenv; however: Package python3-virtualenv is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} ipython3{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libicu67{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} openssl{a} po-debconf{a} python-babel-localedata{a} python-pip-whl{a} python3{a} python3-alabaster{a} python3-appdirs{a} python3-babel{a} python3-backcall{a} python3-certifi{a} python3-chardet{a} python3-decorator{a} python3-dev{a} python3-distlib{a} python3-distutils{a} python3-docutils{a} python3-filelock{a} python3-idna{a} python3-imagesize{a} python3-importlib-metadata{a} python3-ipython{a} python3-ipython-genutils{a} python3-jedi{a} python3-jinja2{a} python3-lib2to3{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-parso{a} python3-pexpect{a} python3-pickleshare{a} python3-pip{a} python3-pkg-resources{a} python3-prompt-toolkit{a} python3-ptyprocess{a} python3-pygments{a} python3-pyparsing{a} python3-requests{a} python3-roman{a} python3-setuptools{a} python3-six{a} python3-snowballstemmer{a} python3-sphinx{a} python3-traitlets{a} python3-tz{a} python3-urllib3{a} python3-virtualenv{a} python3-wcwidth{a} python3-wheel{a} python3-zipp{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-pil wget 0 packages upgraded, 108 newly installed, 0 to remove and 0 not upgraded. Need to get 46.8 MB of archives. After unpacking 191 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 sgml-base all 1.30 [15.1 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1k-1+deb11u1 [851 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 cython3 amd64 0.29.21-3+b1 [1312 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 docutils-common all 0.16+dfsg-4 [129 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 python3-backcall all 0.2.0-1 [10.7 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 python3-decorator all 4.4.2-2 [15.8 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 python3-parso all 0.8.1-1 [65.9 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 python3-jedi all 0.18.0-1 [620 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 python3-ptyprocess all 0.7.0-1 [13.6 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 python3-pexpect all 4.8.0-2 [54.9 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 python3-pickleshare all 0.7.5-3 [7604 B] Get: 60 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 python3-wcwidth all 0.1.9+dfsg1-2 [18.2 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 python3-prompt-toolkit all 3.0.14-1 [258 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 python3-pygments all 2.7.1+dfsg-2.1 [657 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 python3-ipython-genutils all 0.2.0-4 [21.4 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 python3-traitlets all 5.0.5-1 [84.4 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 python3-ipython all 7.20.0-1 [517 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 ipython3 all 7.20.0-1 [24.8 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 libexpat1-dev amd64 2.2.10-2 [140 kB] Get: 69 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 71 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 72 http://deb.debian.org/debian bullseye/main amd64 libpython3.9 amd64 3.9.2-1 [1691 kB] Get: 73 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-dev amd64 3.9.2-1 [4028 kB] Get: 74 http://deb.debian.org/debian bullseye/main amd64 libpython3-dev amd64 3.9.2-3 [21.7 kB] Get: 75 http://deb.debian.org/debian bullseye/main amd64 python-babel-localedata all 2.8.0+dfsg.1-7 [4997 kB] Get: 76 http://deb.debian.org/debian bullseye/main amd64 python-pip-whl all 20.3.4-4 [1948 kB] Get: 77 http://deb.debian.org/debian bullseye/main amd64 python3-alabaster all 0.7.8-1.1 [18.6 kB] Get: 78 http://deb.debian.org/debian bullseye/main amd64 python3-appdirs all 1.4.4-1 [12.7 kB] Get: 79 http://deb.debian.org/debian bullseye/main amd64 python3-tz all 2021.1-1 [34.8 kB] Get: 80 http://deb.debian.org/debian bullseye/main amd64 python3-babel all 2.8.0+dfsg.1-7 [100 kB] Get: 81 http://deb.debian.org/debian bullseye/main amd64 python3-certifi all 2020.6.20-1 [151 kB] Get: 82 http://deb.debian.org/debian bullseye/main amd64 python3-chardet all 4.0.0-1 [99.0 kB] Get: 83 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get: 84 http://deb.debian.org/debian bullseye/main amd64 python3.9-dev amd64 3.9.2-1 [515 kB] Get: 85 http://deb.debian.org/debian bullseye/main amd64 python3-dev amd64 3.9.2-3 [24.8 kB] Get: 86 http://deb.debian.org/debian bullseye/main amd64 python3-distlib all 0.3.2+really+0.3.1-0.1 [123 kB] Get: 87 http://deb.debian.org/debian bullseye/main amd64 python3-roman all 2.0.0-5 [9064 B] Get: 88 http://deb.debian.org/debian bullseye/main amd64 python3-docutils all 0.16+dfsg-4 [384 kB] Get: 89 http://deb.debian.org/debian bullseye/main amd64 python3-filelock all 3.0.12-2 [8036 B] Get: 90 http://deb.debian.org/debian bullseye/main amd64 python3-idna all 2.10-1 [37.4 kB] Get: 91 http://deb.debian.org/debian bullseye/main amd64 python3-imagesize all 1.2.0-2 [5824 B] Get: 92 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get: 93 http://deb.debian.org/debian bullseye/main amd64 python3-more-itertools all 4.2.0-3 [42.7 kB] Get: 94 http://deb.debian.org/debian bullseye/main amd64 python3-zipp all 1.0.0-3 [6060 B] Get: 95 http://deb.debian.org/debian bullseye/main amd64 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get: 96 http://deb.debian.org/debian bullseye/main amd64 python3-markupsafe amd64 1.1.1-1+b3 [15.2 kB] Get: 97 http://deb.debian.org/debian bullseye/main amd64 python3-jinja2 all 2.11.3-1 [114 kB] Get: 98 http://deb.debian.org/debian bullseye/main amd64 python3-pyparsing all 2.4.7-1 [109 kB] Get: 99 http://deb.debian.org/debian bullseye/main amd64 python3-packaging all 20.9-2 [33.5 kB] Get: 100 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Get: 101 http://deb.debian.org/debian bullseye/main amd64 python3-wheel all 0.34.2-1 [24.0 kB] Get: 102 http://deb.debian.org/debian bullseye/main amd64 python3-pip all 20.3.4-4 [337 kB] Get: 103 http://deb.debian.org/debian bullseye/main amd64 python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get: 104 http://deb.debian.org/debian bullseye/main amd64 python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get: 105 http://deb.debian.org/debian bullseye/main amd64 python3-snowballstemmer all 2.1.0-1 [58.7 kB] Get: 106 http://deb.debian.org/debian bullseye/main amd64 sphinx-common all 3.4.3-2 [578 kB] Get: 107 http://deb.debian.org/debian bullseye/main amd64 python3-sphinx all 3.4.3-2 [545 kB] Get: 108 http://deb.debian.org/debian bullseye/main amd64 python3-virtualenv all 20.4.0+ds-2+deb11u1 [89.1 kB] Fetched 46.8 MB in 1s (71.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_amd64.deb ... 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Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20522 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../2-libmpdec3_2.5.1-1_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../3-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../4-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../5-libpython3.9-stdlib_3.9.2-1_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../6-python3.9_3.9.2-1_amd64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../7-libpython3-stdlib_3.9.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20943 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sgml-base. Preparing to unpack .../01-sgml-base_1.30_all.deb ... Unpacking sgml-base (1.30) ... Selecting previously unselected package sensible-utils. 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Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../09-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package cython3. 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Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../23-libelf1_0.183-1_amd64.deb ... Unpacking libelf1:amd64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.13+20210201-1_amd64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../25-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../26-libxml2_2.9.10+dfsg-6.7_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. 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Preparing to unpack .../33-dh-python_4.20201102+nmu1_all.deb ... Unpacking dh-python (4.20201102+nmu1) ... Selecting previously unselected package xml-core. Preparing to unpack .../34-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) ... Selecting previously unselected package docutils-common. Preparing to unpack .../35-docutils-common_0.16+dfsg-4_all.deb ... Unpacking docutils-common (0.16+dfsg-4) ... Selecting previously unselected package python3-backcall. Preparing to unpack .../36-python3-backcall_0.2.0-1_all.deb ... Unpacking python3-backcall (0.2.0-1) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../37-python3-decorator_4.4.2-2_all.deb ... Unpacking python3-decorator (4.4.2-2) ... Selecting previously unselected package python3-parso. Preparing to unpack .../38-python3-parso_0.8.1-1_all.deb ... Unpacking python3-parso (0.8.1-1) ... Selecting previously unselected package python3-jedi. Preparing to unpack .../39-python3-jedi_0.18.0-1_all.deb ... Unpacking python3-jedi (0.18.0-1) ... Selecting previously unselected package python3-ptyprocess. Preparing to unpack .../40-python3-ptyprocess_0.7.0-1_all.deb ... Unpacking python3-ptyprocess (0.7.0-1) ... Selecting previously unselected package python3-pexpect. Preparing to unpack .../41-python3-pexpect_4.8.0-2_all.deb ... Unpacking python3-pexpect (4.8.0-2) ... Selecting previously unselected package python3-pickleshare. Preparing to unpack .../42-python3-pickleshare_0.7.5-3_all.deb ... Unpacking python3-pickleshare (0.7.5-3) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../43-python3-pkg-resources_52.0.0-4_all.deb ... Unpacking python3-pkg-resources (52.0.0-4) ... Selecting previously unselected package python3-wcwidth. Preparing to unpack .../44-python3-wcwidth_0.1.9+dfsg1-2_all.deb ... Unpacking python3-wcwidth (0.1.9+dfsg1-2) ... Selecting previously unselected package python3-prompt-toolkit. Preparing to unpack .../45-python3-prompt-toolkit_3.0.14-1_all.deb ... Unpacking python3-prompt-toolkit (3.0.14-1) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../46-python3-pygments_2.7.1+dfsg-2.1_all.deb ... Unpacking python3-pygments (2.7.1+dfsg-2.1) ... Selecting previously unselected package python3-ipython-genutils. Preparing to unpack .../47-python3-ipython-genutils_0.2.0-4_all.deb ... Unpacking python3-ipython-genutils (0.2.0-4) ... Selecting previously unselected package python3-traitlets. Preparing to unpack .../48-python3-traitlets_5.0.5-1_all.deb ... Unpacking python3-traitlets (5.0.5-1) ... Selecting previously unselected package python3-ipython. Preparing to unpack .../49-python3-ipython_7.20.0-1_all.deb ... Unpacking python3-ipython (7.20.0-1) ... Selecting previously unselected package ipython3. Preparing to unpack .../50-ipython3_7.20.0-1_all.deb ... Unpacking ipython3 (7.20.0-1) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../51-libexpat1-dev_2.2.10-2_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.2.10-2) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../52-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ... Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../53-libjs-underscore_1.9.1~dfsg-3_all.deb ... Unpacking libjs-underscore (1.9.1~dfsg-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../54-libjs-sphinxdoc_3.4.3-2_all.deb ... Unpacking libjs-sphinxdoc (3.4.3-2) ... Selecting previously unselected package libpython3.9:amd64. Preparing to unpack .../55-libpython3.9_3.9.2-1_amd64.deb ... Unpacking libpython3.9:amd64 (3.9.2-1) ... Selecting previously unselected package libpython3.9-dev:amd64. Preparing to unpack .../56-libpython3.9-dev_3.9.2-1_amd64.deb ... Unpacking libpython3.9-dev:amd64 (3.9.2-1) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../57-libpython3-dev_3.9.2-3_amd64.deb ... Unpacking libpython3-dev:amd64 (3.9.2-3) ... Selecting previously unselected package python-babel-localedata. Preparing to unpack .../58-python-babel-localedata_2.8.0+dfsg.1-7_all.deb ... Unpacking python-babel-localedata (2.8.0+dfsg.1-7) ... Selecting previously unselected package python-pip-whl. Preparing to unpack .../59-python-pip-whl_20.3.4-4_all.deb ... Unpacking python-pip-whl (20.3.4-4) ... Selecting previously unselected package python3-alabaster. Preparing to unpack .../60-python3-alabaster_0.7.8-1.1_all.deb ... Unpacking python3-alabaster (0.7.8-1.1) ... Selecting previously unselected package python3-appdirs. Preparing to unpack .../61-python3-appdirs_1.4.4-1_all.deb ... Unpacking python3-appdirs (1.4.4-1) ... Selecting previously unselected package python3-tz. Preparing to unpack .../62-python3-tz_2021.1-1_all.deb ... Unpacking python3-tz (2021.1-1) ... Selecting previously unselected package python3-babel. Preparing to unpack .../63-python3-babel_2.8.0+dfsg.1-7_all.deb ... Unpacking python3-babel (2.8.0+dfsg.1-7) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../64-python3-certifi_2020.6.20-1_all.deb ... Unpacking python3-certifi (2020.6.20-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../65-python3-chardet_4.0.0-1_all.deb ... Unpacking python3-chardet (4.0.0-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../66-zlib1g-dev_1%3a1.2.11.dfsg-2_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Selecting previously unselected package python3.9-dev. Preparing to unpack .../67-python3.9-dev_3.9.2-1_amd64.deb ... Unpacking python3.9-dev (3.9.2-1) ... 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Preparing to unpack .../91-python3-virtualenv_20.4.0+ds-2+deb11u1_all.deb ... Unpacking python3-virtualenv (20.4.0+ds-2+deb11u1) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up python-babel-localedata (2.8.0+dfsg.1-7) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libexpat1-dev:amd64 (2.2.10-2) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up sgml-base (1.30) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up openssl (1.1.1k-1+deb11u1) ... Setting up libelf1:amd64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up xml-core (0.18+nmu1) ... Setting up python-pip-whl (20.3.4-4) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libpython3.9:amd64 (3.9.2-1) ... Setting up sphinx-common (3.4.3-2) ... Setting up python3.9 (3.9.2-1) ... Setting up libpython3.9-dev:amd64 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-distlib (0.3.2+really+0.3.1-0.1) ... Setting up python3-markupsafe (1.1.1-1+b3) ... Setting up python3-wheel (0.34.2-1) ... Setting up python3-tz (2021.1-1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-roman (2.0.0-5) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-jinja2 (2.11.3-1) ... Setting up python3-wcwidth (0.1.9+dfsg1-2) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up python3-snowballstemmer (2.1.0-1) ... Setting up python3-idna (2.10-1) ... Setting up cython3 (0.29.21-3+b1) ... Setting up python3-pickleshare (0.7.5-3) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-appdirs (1.4.4-1) ... Setting up python3-imagesize (1.2.0-2) ... Setting up python3-ptyprocess (0.7.0-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-prompt-toolkit (3.0.14-1) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-filelock (3.0.12-2) ... Setting up libpython3-dev:amd64 (3.9.2-3) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-backcall (0.2.0-1) ... Setting up python3-parso (0.8.1-1) ... Setting up python3-babel (2.8.0+dfsg.1-7) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-ipython-genutils (0.2.0-4) ... Setting up python3-alabaster (0.7.8-1.1) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-pygments (2.7.1+dfsg-2.1) ... Setting up python3-packaging (20.9-2) ... Setting up python3-chardet (4.0.0-1) ... Setting up python3-pexpect (4.8.0-2) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up python3-pip (20.3.4-4) ... Setting up python3-traitlets (5.0.5-1) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up python3-jedi (0.18.0-1) ... Setting up python3-virtualenv (20.4.0+ds-2+deb11u1) ... Setting up python3-ipython (7.20.0-1) ... Setting up ipython3 (7.20.0-1) ... Processing triggers for libc-bin (2.31-13+deb11u2) ... Processing triggers for sgml-base (1.30) ... Setting up docutils-common (0.16+dfsg-4) ... Processing triggers for sgml-base (1.30) ... Setting up python3-docutils (0.16+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-sphinx (3.4.3-2) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package hostname: Name or service not known I: Running cd /build/obitools-1.2.13+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../obitools_1.2.13+dfsg-3_source.changes dpkg-buildpackage: info: source package obitools dpkg-buildpackage: info: source version 1.2.13+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/obitools-1.2.13+dfsg' # skip it make[1]: Leaving directory '/build/obitools-1.2.13+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/obitools-1.2.13+dfsg' dh_clean rm -rf build rm -f doc/sphinx/build_dir.txt rm -rf src/OBITools.egg-info make[1]: Leaving directory '/build/obitools-1.2.13+dfsg' debian/rules build dh build --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config ['src/obitools/_obitools.pyx'] ['src/obitools/fastq/_fastq.pyx'] ['src/obitools/format/_format.pyx'] ['src/obitools/format/genericparser/_genericparser.pyx'] ['src/obitools/word/_binary.pyx'] @@@@> ['src/obitools/word/_readindex.h'] ['src/obitools/word/_readindex.pyx'] ['src/obitools/profile/_profile.pyx'] ['src/obitools/align/_qsrassemble.pyx'] ['src/obitools/align/_qsassemble.pyx'] @@@@> ['src/obitools/align/_lcs.h'] ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.4.c'] ['src/obitools/align/_freeendgapfm.pyx'] ['src/obitools/align/_profilenws.pyx'] ['src/obitools/align/_nwsdnabyprot.pyx'] ['src/obitools/align/_assemble.pyx'] ['src/obitools/align/_rassemble.pyx'] @@@@> ['src/obitools/align/_sse.h'] ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] ['src/obitools/align/_gprofilenws.pyx'] ['src/obitools/align/_freeendgap.pyx'] ['src/obitools/align/_nws.pyx'] ['src/obitools/align/_dynamic.pyx'] ['src/obitools/align/_codonnws.pyx'] ['src/obitools/fasta/_fasta.pyx'] ['src/obitools/utils/_utils.pyx'] ['src/obitools/tools/_solexapairend.pyx'] ['src/obitools/options/_options.pyx'] ['src/obitools/options/_bioseqfilter.pyx'] running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build ['src/obitools/_obitools.pyx'] ['src/obitools/fastq/_fastq.pyx'] ['src/obitools/format/_format.pyx'] ['src/obitools/format/genericparser/_genericparser.pyx'] ['src/obitools/word/_binary.pyx'] @@@@> ['src/obitools/word/_readindex.h'] ['src/obitools/word/_readindex.pyx'] ['src/obitools/profile/_profile.pyx'] ['src/obitools/align/_qsrassemble.pyx'] ['src/obitools/align/_qsassemble.pyx'] @@@@> ['src/obitools/align/_lcs.h'] ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.4.c'] ['src/obitools/align/_freeendgapfm.pyx'] ['src/obitools/align/_profilenws.pyx'] ['src/obitools/align/_nwsdnabyprot.pyx'] ['src/obitools/align/_assemble.pyx'] ['src/obitools/align/_rassemble.pyx'] @@@@> ['src/obitools/align/_sse.h'] ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] ['src/obitools/align/_gprofilenws.pyx'] ['src/obitools/align/_freeendgap.pyx'] ['src/obitools/align/_nws.pyx'] ['src/obitools/align/_dynamic.pyx'] ['src/obitools/align/_codonnws.pyx'] ['src/obitools/fasta/_fasta.pyx'] ['src/obitools/utils/_utils.pyx'] ['src/obitools/tools/_solexapairend.pyx'] ['src/obitools/options/_options.pyx'] ['src/obitools/options/_bioseqfilter.pyx'] running build Running obidistutils build process running littlebigman creating build creating build/temp.linux-x86_64-3.9 building 'littlebigman' program creating build/temp.linux-x86_64-3.9/distutils.ext creating build/temp.linux-x86_64-3.9/distutils.ext/src x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c distutils.ext/src/littlebigman.c -o build/temp.linux-x86_64-3.9/distutils.ext/src/littlebigman.o -msse2 distutils.ext/src/littlebigman.c: In function 'main': distutils.ext/src/littlebigman.c:20:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 20 | else | ^~~~ distutils.ext/src/littlebigman.c:23:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 23 | return 0; | ^~~~~~ x86_64-linux-gnu-gcc -pthread build/temp.linux-x86_64-3.9/distutils.ext/src/littlebigman.o -o build/temp.linux-x86_64-3.9/littlebigman Your CPU is in mode : b'-DLITTLE_END' running build_py creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools copying src/obitools/SVGdraw.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools copying src/obitools/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools copying src/obitools/zipfile.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools copying src/obitools/svg.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools copying src/obitools/solexaPairEnd.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools copying src/obitools/sample.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools copying src/obitools/gzip.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools copying src/obitools/fast.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools copying src/obitools/collections.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools copying src/obitools/decorator.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools copying src/obitools/version.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/taxonomy.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/rawdata.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/ecotag.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/databases.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/options.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecobarcode creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/fastq copying src/obitools/fastq/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/fastq creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/distances copying src/obitools/distances/r.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/distances copying src/obitools/distances/phylip.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/distances copying src/obitools/distances/observed.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/distances copying src/obitools/distances/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/distances creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/blast copying src/obitools/blast/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/blast creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format copying src/obitools/format/options.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format copying src/obitools/format/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/genericparser copying src/obitools/format/genericparser/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/genericparser creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/fnaqual.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/fasta.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/genbank.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/tagmatcher.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/fastq.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/embl.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/sequence creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/ontology copying src/obitools/format/ontology/go_obo.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/ontology copying src/obitools/format/ontology/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/ontology creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/word copying src/obitools/word/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/word copying src/obitools/word/predicate.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/word copying src/obitools/word/options.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/word creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/alignment copying src/obitools/alignment/ace.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/alignment copying src/obitools/alignment/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/alignment creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/interactive copying src/obitools/interactive/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/interactive creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tagmatcher copying src/obitools/tagmatcher/parser.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tagmatcher copying src/obitools/tagmatcher/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tagmatcher copying src/obitools/tagmatcher/options.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tagmatcher creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb copying src/obitools/seqdb/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb copying src/obitools/seqdb/dnaparser.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb/genbank copying src/obitools/seqdb/genbank/parser.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb/genbank copying src/obitools/seqdb/genbank/ncbi.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb/genbank copying src/obitools/seqdb/genbank/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb/genbank creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb/embl copying src/obitools/seqdb/embl/parser.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb/embl copying src/obitools/seqdb/embl/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb/embl creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb/blastdb copying src/obitools/seqdb/blastdb/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb/blastdb creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/table copying src/obitools/table/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/table copying src/obitools/table/csv.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/table creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/profile copying src/obitools/profile/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/profile creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecopcr copying src/obitools/ecopcr/taxonomy.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecopcr copying src/obitools/ecopcr/sequence.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecopcr copying src/obitools/ecopcr/options.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecopcr copying src/obitools/ecopcr/annotation.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecopcr copying src/obitools/ecopcr/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecopcr creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align copying src/obitools/align/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align copying src/obitools/align/ssearch.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align copying src/obitools/align/homopolymere.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obo copying src/obitools/obo/parser.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obo copying src/obitools/obo/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obo creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obo/go copying src/obitools/obo/go/parser.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obo/go copying src/obitools/obo/go/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obo/go creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/carto copying src/obitools/carto/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/carto creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/dnahash copying src/obitools/dnahash/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/dnahash creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/thermo copying src/obitools/thermo/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/thermo creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/fasta copying src/obitools/fasta/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/fasta creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/utils copying src/obitools/utils/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/utils copying src/obitools/utils/crc64.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/utils copying src/obitools/utils/bioseq.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/utils copying src/obitools/utils/iterator.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/utils creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/goa copying src/obitools/goa/parser.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/goa copying src/obitools/goa/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/goa creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecotag copying src/obitools/ecotag/parser.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecotag copying src/obitools/ecotag/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecotag creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph copying src/obitools/graph/rootedtree.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph copying src/obitools/graph/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph copying src/obitools/graph/dag.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph copying src/obitools/graph/tree.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/algorithms copying src/obitools/graph/algorithms/compact.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/algorithms copying src/obitools/graph/algorithms/clique.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/algorithms copying src/obitools/graph/algorithms/component.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/algorithms copying src/obitools/graph/algorithms/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/algorithms creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/layout copying src/obitools/graph/layout/radialtree.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/layout copying src/obitools/graph/layout/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/layout creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/writeBcTree.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/drawBcTree.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/calcBc.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/readFiles.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/findErrors.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/barcodecoverage creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/fnaqual copying src/obitools/fnaqual/quality.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/fnaqual copying src/obitools/fnaqual/fasta.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/fnaqual copying src/obitools/fnaqual/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/fnaqual creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/location copying src/obitools/location/feature.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/location copying src/obitools/location/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/location creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/solexa copying src/obitools/solexa/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/solexa creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obischemas copying src/obitools/obischemas/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obischemas copying src/obitools/obischemas/options.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obischemas creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obischemas/kb copying src/obitools/obischemas/kb/extern.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obischemas/kb copying src/obitools/obischemas/kb/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obischemas/kb creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/metabarcoding copying src/obitools/metabarcoding/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/metabarcoding copying src/obitools/metabarcoding/options.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/metabarcoding creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/phylogeny copying src/obitools/phylogeny/newick.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/phylogeny copying src/obitools/phylogeny/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/phylogeny creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tools copying src/obitools/tools/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tools copying src/obitools/tools/solexapairend.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tools creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/parallel copying src/obitools/parallel/jobqueue.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/parallel copying src/obitools/parallel/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/parallel creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/unit copying src/obitools/unit/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/unit creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/unit/obitools copying src/obitools/unit/obitools/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/unit/obitools creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/sequenceencoder copying src/obitools/sequenceencoder/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/sequenceencoder creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/eutils copying src/obitools/eutils/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/eutils creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/options copying src/obitools/options/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/options copying src/obitools/options/bioseqedittag.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/options copying src/obitools/options/bioseqfilter.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/options copying src/obitools/options/taxonomyfilter.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/options copying src/obitools/options/bioseqcutter.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/options creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tree copying src/obitools/tree/newick.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tree copying src/obitools/tree/dot.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tree copying src/obitools/tree/svg.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tree copying src/obitools/tree/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tree copying src/obitools/tree/layout.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tree copying src/obitools/tree/unrooted.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tree creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/statistics copying src/obitools/statistics/noncentralhypergeo.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/statistics copying src/obitools/statistics/hypergeometric.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/statistics copying src/obitools/statistics/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/statistics running build_ext obitools._obitools src/obitools/_obitools.pyx ok obitools.fastq._fastq src/obitools/fastq/_fastq.pyx ok obitools.format._format src/obitools/format/_format.pyx ok obitools.format.genericparser._genericparser src/obitools/format/genericparser/_genericparser.pyx ok obitools.word._binary src/obitools/word/_binary.pyx ok obitools.word._readindex src/obitools/word/_readindex.pyx ok obitools.profile._profile src/obitools/profile/_profile.pyx ok obitools.align._qsrassemble src/obitools/align/_qsrassemble.pyx ok obitools.align._qsassemble src/obitools/align/_qsassemble.pyx ok obitools.align._lcs src/obitools/align/_lcs.pyx ok obitools.align._lcs src/obitools/align/_lcs.ext.1.c ok obitools.align._lcs src/obitools/align/_lcs.ext.2.c ok obitools.align._lcs src/obitools/align/_lcs.ext.3.c ok obitools.align._lcs src/obitools/align/_lcs.ext.4.c ok obitools.align._freeendgapfm src/obitools/align/_freeendgapfm.pyx ok obitools.align._profilenws src/obitools/align/_profilenws.pyx ok obitools.align._nwsdnabyprot src/obitools/align/_nwsdnabyprot.pyx ok obitools.align._assemble src/obitools/align/_assemble.pyx ok obitools.align._rassemble src/obitools/align/_rassemble.pyx ok obitools.align._upperbond src/obitools/align/_upperbond.pyx ok obitools.align._upperbond src/obitools/align/_upperbond.ext.1.c ok obitools.align._gprofilenws src/obitools/align/_gprofilenws.pyx ok obitools.align._freeendgap src/obitools/align/_freeendgap.pyx ok obitools.align._nws src/obitools/align/_nws.pyx ok obitools.align._dynamic src/obitools/align/_dynamic.pyx ok obitools.align._codonnws src/obitools/align/_codonnws.pyx ok obitools.fasta._fasta src/obitools/fasta/_fasta.pyx ok obitools.utils._utils src/obitools/utils/_utils.pyx ok obitools.tools._solexapairend src/obitools/tools/_solexapairend.pyx ok obitools.options._options src/obitools/options/_options.pyx ok obitools.options._bioseqfilter src/obitools/options/_bioseqfilter.pyx ok #####> ['src/obitools/_obitools.pyx'] cythoning src/obitools/_obitools.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/_obitools.c creating build/temp.linux-x86_64-3.9/pyrex creating build/temp.linux-x86_64-3.9/pyrex/obitools building 'obitools._obitools' extension creating build/temp.linux-x86_64-3.9/build creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/_obitools.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/_obitools.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/_obitools.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/_obitools.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/fastq/_fastq.pyx'] cythoning src/obitools/fastq/_fastq.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/fastq/_fastq.c creating build/temp.linux-x86_64-3.9/pyrex/obitools/fastq building 'obitools.fastq._fastq' extension creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/fastq x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/fastq/_fastq.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/fastq/_fastq.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/fastq/_fastq.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/fastq/_fastq.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/format/_format.pyx'] cythoning src/obitools/format/_format.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/format/_format.c creating build/temp.linux-x86_64-3.9/pyrex/obitools/format building 'obitools.format._format' extension creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/format x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/format/_format.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/format/_format.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/format/_format.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/_format.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/format/genericparser/_genericparser.pyx'] cythoning src/obitools/format/genericparser/_genericparser.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/format/genericparser/_genericparser.c creating build/temp.linux-x86_64-3.9/pyrex/obitools/format/genericparser building 'obitools.format.genericparser._genericparser' extension creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/format/genericparser x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/format/genericparser/_genericparser.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/format/genericparser/_genericparser.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/format/genericparser/_genericparser.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/genericparser/_genericparser.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/word/_binary.pyx'] cythoning src/obitools/word/_binary.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/word/_binary.c creating build/temp.linux-x86_64-3.9/pyrex/obitools/word building 'obitools.word._binary' extension creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/word x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/word/_binary.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/word/_binary.o build/temp.linux-x86_64-3.9/pyrex/obitools/word/_binary.c: In function '__pyx_f_8obitools_4word_7_binary_bin2str': build/temp.linux-x86_64-3.9/pyrex/obitools/word/_binary.c:1656:33: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] 1656 | for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) { | ^ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/word/_binary.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/word/_binary.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/word/_readindex.pyx'] cythoning src/obitools/word/_readindex.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/word/_readindex.c building 'obitools.word._readindex' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/word -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/word/_readindex.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/word/_readindex.o -msse2 build/temp.linux-x86_64-3.9/pyrex/obitools/word/_readindex.c: In function '__pyx_pf_8obitools_4word_10_readindex_9ReadIndex_10indexWords': build/temp.linux-x86_64-3.9/pyrex/obitools/word/_readindex.c:6138:3: warning: implicit declaration of function 'heapsort' [-Wimplicit-function-declaration] 6138 | heapsort(__pyx_v_self->_wordlist, __pyx_v_i, (sizeof(pobinuc)), __pyx_f_8obitools_4word_10_readindex_cmpwords); | ^~~~~~~~ build/temp.linux-x86_64-3.9/pyrex/obitools/word/_readindex.c: In function '__pyx_gb_8obitools_4word_10_readindex_9ReadIndex_14generator': build/temp.linux-x86_64-3.9/pyrex/obitools/word/_readindex.c:6407:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 6407 | for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) { | ^ build/temp.linux-x86_64-3.9/pyrex/obitools/word/_readindex.c: In function '__pyx_gb_8obitools_4word_10_readindex_9ReadIndex_17generator1': build/temp.linux-x86_64-3.9/pyrex/obitools/word/_readindex.c:6605:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 6605 | for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) { | ^ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/word/_readindex.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/word/_readindex.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/profile/_profile.pyx'] cythoning src/obitools/profile/_profile.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/profile/_profile.c creating build/temp.linux-x86_64-3.9/pyrex/obitools/profile building 'obitools.profile._profile' extension creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/profile x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/profile/_profile.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/profile/_profile.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/profile/_profile.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/profile/_profile.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/align/_qsrassemble.pyx'] cythoning src/obitools/align/_qsrassemble.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/align/_qsrassemble.c creating build/temp.linux-x86_64-3.9/pyrex/obitools/align building 'obitools.align._qsrassemble' extension creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/align/_qsrassemble.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_qsrassemble.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_qsrassemble.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_qsrassemble.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/align/_qsassemble.pyx'] cythoning src/obitools/align/_qsassemble.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/align/_qsassemble.c building 'obitools.align._qsassemble' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/align/_qsassemble.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_qsassemble.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_qsassemble.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_qsassemble.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.4.c'] cythoning src/obitools/align/_lcs.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/align/_lcs.c building 'obitools.align._lcs' extension creating build/temp.linux-x86_64-3.9/src creating build/temp.linux-x86_64-3.9/src/obitools creating build/temp.linux-x86_64-3.9/src/obitools/align x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/align/_lcs.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_lcs.o -msse2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.9 -c src/obitools/align/_lcs.ext.1.c -o build/temp.linux-x86_64-3.9/src/obitools/align/_lcs.ext.1.o -msse2 src/obitools/align/_lcs.ext.1.c: In function 'simpleLCS': src/obitools/align/_lcs.ext.1.c:159:18: warning: 'pl' may be used uninitialized in this function [-Wmaybe-uninitialized] 159 | if(lpath) *lpath=pl; | ~~~~~~^~~ src/obitools/align/_lcs.ext.1.c:166:9: warning: 'sl' may be used uninitialized in this function [-Wmaybe-uninitialized] 166 | return lcs; | ^~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.9 -c src/obitools/align/_lcs.ext.2.c -o build/temp.linux-x86_64-3.9/src/obitools/align/_lcs.ext.2.o -msse2 In file included from src/obitools/align/_lcs.ext.2.c:34: src/obitools/align/_lcs_fast.h:8:14: warning: 'printreg' defined but not used [-Wunused-function] 8 | static void printreg(VTYPE r) | ^~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.9 -c src/obitools/align/_lcs.ext.3.c -o build/temp.linux-x86_64-3.9/src/obitools/align/_lcs.ext.3.o -msse2 In file included from src/obitools/align/_lcs.ext.3.c:34: src/obitools/align/_lcs_fast.h:8:14: warning: 'printreg' defined but not used [-Wunused-function] 8 | static void printreg(VTYPE r) | ^~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.9 -c src/obitools/align/_lcs.ext.4.c -o build/temp.linux-x86_64-3.9/src/obitools/align/_lcs.ext.4.o -msse2 src/obitools/align/_lcs.ext.4.c: In function 'buildTable': src/obitools/align/_lcs.ext.4.c:96:5: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] 96 | if (zero.c[0]+zero.c[1]+zero.c[2]+zero.c[3]==0) | ^ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_lcs.o build/temp.linux-x86_64-3.9/src/obitools/align/_lcs.ext.1.o build/temp.linux-x86_64-3.9/src/obitools/align/_lcs.ext.2.o build/temp.linux-x86_64-3.9/src/obitools/align/_lcs.ext.3.o build/temp.linux-x86_64-3.9/src/obitools/align/_lcs.ext.4.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_lcs.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/align/_freeendgapfm.pyx'] cythoning src/obitools/align/_freeendgapfm.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/align/_freeendgapfm.c building 'obitools.align._freeendgapfm' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/align/_freeendgapfm.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_freeendgapfm.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_freeendgapfm.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_freeendgapfm.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/align/_profilenws.pyx'] cythoning src/obitools/align/_profilenws.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/align/_profilenws.c building 'obitools.align._profilenws' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/align/_profilenws.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_profilenws.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_profilenws.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_profilenws.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/align/_nwsdnabyprot.pyx'] cythoning src/obitools/align/_nwsdnabyprot.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/align/_nwsdnabyprot.c building 'obitools.align._nwsdnabyprot' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/align/_nwsdnabyprot.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_nwsdnabyprot.o build/temp.linux-x86_64-3.9/pyrex/obitools/align/_nwsdnabyprot.c: In function '__pyx_f_8obitools_5align_13_nwsdnabyprot_12NWSDNAByProt_doAlignment': build/temp.linux-x86_64-3.9/pyrex/obitools/align/_nwsdnabyprot.c:4816:29: warning: '__pyx_v_smatrix' may be used uninitialized in this function [-Wmaybe-uninitialized] 4816 | __pyx_r = (__pyx_v_smatrix[__pyx_v_idx]).score; | ^ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_nwsdnabyprot.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_nwsdnabyprot.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/align/_assemble.pyx'] cythoning src/obitools/align/_assemble.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/align/_assemble.c building 'obitools.align._assemble' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/align/_assemble.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_assemble.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_assemble.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_assemble.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/align/_rassemble.pyx'] cythoning src/obitools/align/_rassemble.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/align/_rassemble.c building 'obitools.align._rassemble' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/align/_rassemble.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_rassemble.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_rassemble.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_rassemble.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] cythoning src/obitools/align/_upperbond.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/align/_upperbond.c building 'obitools.align._upperbond' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/align/_upperbond.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_upperbond.o -msse2 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.9 -c src/obitools/align/_upperbond.ext.1.c -o build/temp.linux-x86_64-3.9/src/obitools/align/_upperbond.ext.1.o -msse2 src/obitools/align/_upperbond.ext.1.c: In function 'buildTable': src/obitools/align/_upperbond.ext.1.c:96:5: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] 96 | if (zero.c[0]+zero.c[1]+zero.c[2]+zero.c[3]==0) | ^ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_upperbond.o build/temp.linux-x86_64-3.9/src/obitools/align/_upperbond.ext.1.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_upperbond.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/align/_gprofilenws.pyx'] cythoning src/obitools/align/_gprofilenws.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/align/_gprofilenws.c building 'obitools.align._gprofilenws' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/align/_gprofilenws.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_gprofilenws.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_gprofilenws.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_gprofilenws.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/align/_freeendgap.pyx'] cythoning src/obitools/align/_freeendgap.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/align/_freeendgap.c building 'obitools.align._freeendgap' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/align/_freeendgap.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_freeendgap.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_freeendgap.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_freeendgap.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/align/_nws.pyx'] cythoning src/obitools/align/_nws.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/align/_nws.c building 'obitools.align._nws' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/align/_nws.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_nws.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_nws.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_nws.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/align/_dynamic.pyx'] cythoning src/obitools/align/_dynamic.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/align/_dynamic.c building 'obitools.align._dynamic' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/align/_dynamic.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_dynamic.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_dynamic.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_dynamic.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/align/_codonnws.pyx'] cythoning src/obitools/align/_codonnws.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/align/_codonnws.c building 'obitools.align._codonnws' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/align/_codonnws.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_codonnws.o build/temp.linux-x86_64-3.9/pyrex/obitools/align/_codonnws.c: In function '__pyx_f_8obitools_5align_9_codonnws_8CodonNWS_backtrack': build/temp.linux-x86_64-3.9/pyrex/obitools/align/_codonnws.c:26418:104: warning: '__pyx_v_p' may be used uninitialized in this function [-Wmaybe-uninitialized] 26418 | (__pyx_v_self->__pyx_base.__pyx_base.path->path[__pyx_v_self->__pyx_base.__pyx_base.path->length]) = __pyx_v_p; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/align/_codonnws.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_codonnws.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/fasta/_fasta.pyx'] cythoning src/obitools/fasta/_fasta.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/fasta/_fasta.c creating build/temp.linux-x86_64-3.9/pyrex/obitools/fasta building 'obitools.fasta._fasta' extension creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/fasta x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/fasta/_fasta.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/fasta/_fasta.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/fasta/_fasta.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/fasta/_fasta.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/utils/_utils.pyx'] cythoning src/obitools/utils/_utils.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/utils/_utils.c creating build/temp.linux-x86_64-3.9/pyrex/obitools/utils building 'obitools.utils._utils' extension creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/utils x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/utils/_utils.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/utils/_utils.o build/temp.linux-x86_64-3.9/pyrex/obitools/utils/_utils.c: In function '__pyx_f_8obitools_5utils_6_utils_progressBar': build/temp.linux-x86_64-3.9/pyrex/obitools/utils/_utils.c:3663:57: warning: field precision specifier '.*' expects argument of type 'int', but argument 5 has type 'long long unsigned int' [-Wformat=] 3663 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %d days %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.0), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_days, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); | ~~^~ ~~~~~~~~~~~~~~~~ | | | | int long long unsigned int build/temp.linux-x86_64-3.9/pyrex/obitools/utils/_utils.c:3663:63: warning: field precision specifier '.*' expects argument of type 'int', but argument 8 has type 'long long unsigned int' [-Wformat=] 3663 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %d days %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.0), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_days, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); | ~~^~ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long long unsigned int build/temp.linux-x86_64-3.9/pyrex/obitools/utils/_utils.c:3704:57: warning: field precision specifier '.*' expects argument of type 'int', but argument 5 has type 'long long unsigned int' [-Wformat=] 3704 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); | ~~^~ ~~~~~~~~~~~~~~~~ | | | | int long long unsigned int build/temp.linux-x86_64-3.9/pyrex/obitools/utils/_utils.c:3704:63: warning: field precision specifier '.*' expects argument of type 'int', but argument 8 has type 'long long unsigned int' [-Wformat=] 3704 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); | ~~^~ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long long unsigned int x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/utils/_utils.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/utils/_utils.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/tools/_solexapairend.pyx'] cythoning src/obitools/tools/_solexapairend.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/tools/_solexapairend.c creating build/temp.linux-x86_64-3.9/pyrex/obitools/tools building 'obitools.tools._solexapairend' extension creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/tools x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/tools/_solexapairend.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/tools/_solexapairend.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/tools/_solexapairend.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tools/_solexapairend.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/options/_options.pyx'] cythoning src/obitools/options/_options.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/options/_options.c creating build/temp.linux-x86_64-3.9/pyrex/obitools/options building 'obitools.options._options' extension creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/options x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/options/_options.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/options/_options.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/options/_options.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/options/_options.cpython-39-x86_64-linux-gnu.so #####> ['src/obitools/options/_bioseqfilter.pyx'] cythoning src/obitools/options/_bioseqfilter.pyx to build/temp.linux-x86_64-3.9/pyrex/obitools/options/_bioseqfilter.c building 'obitools.options._bioseqfilter' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/obitools/options/_bioseqfilter.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/options/_bioseqfilter.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/obitools/options/_bioseqfilter.o -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/options/_bioseqfilter.cpython-39-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.9 creating build/raw_scripts Store the raw script src/oligotag.py -> build/raw_scripts/oligotag.py copying src/oligotag.py -> build/raw_scripts copying and adjusting src/oligotag.py -> build/scripts-3.9 Store the raw script src/obiuniq.py -> build/raw_scripts/obiuniq.py copying src/obiuniq.py -> build/raw_scripts copying and adjusting src/obiuniq.py -> build/scripts-3.9 Store the raw script src/obitaxonomy.py -> build/raw_scripts/obitaxonomy.py copying src/obitaxonomy.py -> build/raw_scripts copying and adjusting src/obitaxonomy.py -> build/scripts-3.9 Store the raw script src/obitab.py -> build/raw_scripts/obitab.py copying src/obitab.py -> build/raw_scripts copying and adjusting src/obitab.py -> build/scripts-3.9 Store the raw script src/obisubset.py -> build/raw_scripts/obisubset.py copying src/obisubset.py -> build/raw_scripts copying and adjusting src/obisubset.py -> build/scripts-3.9 Store the raw script src/obistat.py -> build/raw_scripts/obistat.py copying src/obistat.py -> build/raw_scripts copying and adjusting src/obistat.py -> build/scripts-3.9 Store the raw script src/obisplit.py -> build/raw_scripts/obisplit.py copying src/obisplit.py -> build/raw_scripts copying and adjusting src/obisplit.py -> build/scripts-3.9 Store the raw script src/obisilva.py -> build/raw_scripts/obisilva.py copying src/obisilva.py -> build/raw_scripts copying and adjusting src/obisilva.py -> build/scripts-3.9 Store the raw script src/obiselect.py -> build/raw_scripts/obiselect.py copying src/obiselect.py -> build/raw_scripts copying and adjusting src/obiselect.py -> build/scripts-3.9 Store the raw script src/obisample.py -> build/raw_scripts/obisample.py copying src/obisample.py -> build/raw_scripts copying and adjusting src/obisample.py -> build/scripts-3.9 Store the raw script src/obipr2.py -> build/raw_scripts/obipr2.py copying src/obipr2.py -> build/raw_scripts copying and adjusting src/obipr2.py -> build/scripts-3.9 Store the raw script src/obijoinpairedend.py -> build/raw_scripts/obijoinpairedend.py copying src/obijoinpairedend.py -> build/raw_scripts copying and adjusting src/obijoinpairedend.py -> build/scripts-3.9 Store the raw script src/obihead.py -> build/raw_scripts/obihead.py copying src/obihead.py -> build/raw_scripts copying and adjusting src/obihead.py -> build/scripts-3.9 Store the raw script src/obiextract.py -> build/raw_scripts/obiextract.py copying src/obiextract.py -> build/raw_scripts copying and adjusting src/obiextract.py -> build/scripts-3.9 Store the raw script src/obidistribute.py -> build/raw_scripts/obidistribute.py copying src/obidistribute.py -> build/raw_scripts copying and adjusting src/obidistribute.py -> build/scripts-3.9 Store the raw script src/obicut.py -> build/raw_scripts/obicut.py copying src/obicut.py -> build/raw_scripts copying and adjusting src/obicut.py -> build/scripts-3.9 Store the raw script src/obicount.py -> build/raw_scripts/obicount.py copying src/obicount.py -> build/raw_scripts copying and adjusting src/obicount.py -> build/scripts-3.9 Store the raw script src/obiconvert.py -> build/raw_scripts/obiconvert.py copying src/obiconvert.py -> build/raw_scripts copying and adjusting src/obiconvert.py -> build/scripts-3.9 Store the raw script src/obiclean.py -> build/raw_scripts/obiclean.py copying src/obiclean.py -> build/raw_scripts copying and adjusting src/obiclean.py -> build/scripts-3.9 Store the raw script src/obiaddtaxids.py -> build/raw_scripts/obiaddtaxids.py copying src/obiaddtaxids.py -> build/raw_scripts copying and adjusting src/obiaddtaxids.py -> build/scripts-3.9 Store the raw script src/ngsfilter.py -> build/raw_scripts/ngsfilter.py copying src/ngsfilter.py -> build/raw_scripts copying and adjusting src/ngsfilter.py -> build/scripts-3.9 Store the raw script src/illuminapairedend.py -> build/raw_scripts/illuminapairedend.py copying src/illuminapairedend.py -> build/raw_scripts copying and adjusting src/illuminapairedend.py -> build/scripts-3.9 Store the raw script src/extractreads2.py -> build/raw_scripts/extractreads2.py copying src/extractreads2.py -> build/raw_scripts copying and adjusting src/extractreads2.py -> build/scripts-3.9 Store the raw script src/extractreads.py -> build/raw_scripts/extractreads.py copying src/extractreads.py -> build/raw_scripts copying and adjusting src/extractreads.py -> build/scripts-3.9 Store the raw script src/ecotaxstat.py -> build/raw_scripts/ecotaxstat.py copying src/ecotaxstat.py -> build/raw_scripts copying and adjusting src/ecotaxstat.py -> build/scripts-3.9 Store the raw script src/ecotaxspecificity.py -> build/raw_scripts/ecotaxspecificity.py copying src/ecotaxspecificity.py -> build/raw_scripts copying and adjusting src/ecotaxspecificity.py -> build/scripts-3.9 Store the raw script src/ecotag.py -> build/raw_scripts/ecotag.py copying src/ecotag.py -> build/raw_scripts copying and adjusting src/ecotag.py -> build/scripts-3.9 Store the raw script src/ecodbtaxstat.py -> build/raw_scripts/ecodbtaxstat.py copying src/ecodbtaxstat.py -> build/raw_scripts copying and adjusting src/ecodbtaxstat.py -> build/scripts-3.9 Store the raw script src/ali2consensus.py -> build/raw_scripts/ali2consensus.py copying src/ali2consensus.py -> build/raw_scripts copying and adjusting src/ali2consensus.py -> build/scripts-3.9 Store the raw script src/obitail.py -> build/raw_scripts/obitail.py copying src/obitail.py -> build/raw_scripts copying and adjusting src/obitail.py -> build/scripts-3.9 Store the raw script src/obisort.py -> build/raw_scripts/obisort.py copying src/obisort.py -> build/raw_scripts copying and adjusting src/obisort.py -> build/scripts-3.9 Store the raw script src/obigrep.py -> build/raw_scripts/obigrep.py copying src/obigrep.py -> build/raw_scripts copying and adjusting src/obigrep.py -> build/scripts-3.9 Store the raw script src/obicomplement.py -> build/raw_scripts/obicomplement.py copying src/obicomplement.py -> build/raw_scripts copying and adjusting src/obicomplement.py -> build/scripts-3.9 Store the raw script src/obiannotate.py -> build/raw_scripts/obiannotate.py copying src/obiannotate.py -> build/raw_scripts copying and adjusting src/obiannotate.py -> build/scripts-3.9 changing mode of build/scripts-3.9/oligotag from 644 to 755 changing mode of build/scripts-3.9/obiuniq from 644 to 755 changing mode of build/scripts-3.9/obitaxonomy from 644 to 755 changing mode of build/scripts-3.9/obitab from 644 to 755 changing mode of build/scripts-3.9/obisubset from 644 to 755 changing mode of build/scripts-3.9/obistat from 644 to 755 changing mode of build/scripts-3.9/obisplit from 644 to 755 changing mode of build/scripts-3.9/obisilva from 644 to 755 changing mode of build/scripts-3.9/obiselect from 644 to 755 changing mode of build/scripts-3.9/obisample from 644 to 755 changing mode of build/scripts-3.9/obipr2 from 644 to 755 changing mode of build/scripts-3.9/obijoinpairedend from 644 to 755 changing mode of build/scripts-3.9/obihead from 644 to 755 changing mode of build/scripts-3.9/obiextract from 644 to 755 changing mode of build/scripts-3.9/obidistribute from 644 to 755 changing mode of build/scripts-3.9/obicut from 644 to 755 changing mode of build/scripts-3.9/obicount from 644 to 755 changing mode of build/scripts-3.9/obiconvert from 644 to 755 changing mode of build/scripts-3.9/obiclean from 644 to 755 changing mode of build/scripts-3.9/obiaddtaxids from 644 to 755 changing mode of build/scripts-3.9/ngsfilter from 644 to 755 changing mode of build/scripts-3.9/illuminapairedend from 644 to 755 changing mode of build/scripts-3.9/extractreads2 from 644 to 755 changing mode of build/scripts-3.9/extractreads from 644 to 755 changing mode of build/scripts-3.9/ecotaxstat from 644 to 755 changing mode of build/scripts-3.9/ecotaxspecificity from 644 to 755 changing mode of build/scripts-3.9/ecotag from 644 to 755 changing mode of build/scripts-3.9/ecodbtaxstat from 644 to 755 changing mode of build/scripts-3.9/ali2consensus from 644 to 755 changing mode of build/scripts-3.9/obitail from 644 to 755 changing mode of build/scripts-3.9/obisort from 644 to 755 changing mode of build/scripts-3.9/obigrep from 644 to 755 changing mode of build/scripts-3.9/obicomplement from 644 to 755 changing mode of build/scripts-3.9/obiannotate from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:232: cd /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build; python3.9 -m unittest discover -v testCreateSequenceQualifier (obitools.unit.obitools.AABioseqTest) ... ok testDefinitionAttribute (obitools.unit.obitools.AABioseqTest) test if definition attribute exists ... ok testIdAttribute (obitools.unit.obitools.AABioseqTest) test if id attribute exists ... ok testIdValue (obitools.unit.obitools.AABioseqTest) test if id attribute value is 'id1' ... ok testSequenceIsLowerCase (obitools.unit.obitools.AABioseqTest) test if sequence is stored as lower case letter ... ok testSequenceQualifier (obitools.unit.obitools.AABioseqTest) test if the extra qualifier is present and its value is three. ... ok testCreateSequenceQualifier (obitools.unit.obitools.BioseqTest) ... ok testDefinitionAttribute (obitools.unit.obitools.BioseqTest) test if definition attribute exists ... ok testIdAttribute (obitools.unit.obitools.BioseqTest) test if id attribute exists ... ok testIdValue (obitools.unit.obitools.BioseqTest) test if id attribute value is 'id1' ... ok testSequenceIsLowerCase (obitools.unit.obitools.BioseqTest) test if sequence is stored as lower case letter ... ok testSequenceQualifier (obitools.unit.obitools.BioseqTest) test if the extra qualifier is present and its value is three. ... ok testCreateSequenceQualifier (obitools.unit.obitools.NucBioseqTest) ... ok testDefinitionAttribute (obitools.unit.obitools.NucBioseqTest) test if definition attribute exists ... ok testIdAttribute (obitools.unit.obitools.NucBioseqTest) test if id attribute exists ... ok testIdValue (obitools.unit.obitools.NucBioseqTest) test if id attribute value is 'id1' ... ok testSequenceIsLowerCase (obitools.unit.obitools.NucBioseqTest) test if sequence is stored as lower case letter ... ok testSequenceQualifier (obitools.unit.obitools.NucBioseqTest) test if the extra qualifier is present and its value is three. ... ok ---------------------------------------------------------------------- Ran 18 tests in 0.008s OK create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/obitools-1.2.13+dfsg' PYTHONPATH=/build/obitools-1.2.13+dfsg/.pybuild/cpython2_3.9_obitools/build \ http_proxy='127.0.0.1:9' \ dh_auto_install I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/obitools-1.2.13+dfsg/debian/obitools ['src/obitools/_obitools.pyx'] ['src/obitools/fastq/_fastq.pyx'] ['src/obitools/format/_format.pyx'] ['src/obitools/format/genericparser/_genericparser.pyx'] ['src/obitools/word/_binary.pyx'] @@@@> ['src/obitools/word/_readindex.h'] ['src/obitools/word/_readindex.pyx'] ['src/obitools/profile/_profile.pyx'] ['src/obitools/align/_qsrassemble.pyx'] ['src/obitools/align/_qsassemble.pyx'] @@@@> ['src/obitools/align/_lcs.h'] ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.4.c'] ['src/obitools/align/_freeendgapfm.pyx'] ['src/obitools/align/_profilenws.pyx'] ['src/obitools/align/_nwsdnabyprot.pyx'] ['src/obitools/align/_assemble.pyx'] ['src/obitools/align/_rassemble.pyx'] @@@@> ['src/obitools/align/_sse.h'] ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] ['src/obitools/align/_gprofilenws.pyx'] ['src/obitools/align/_freeendgap.pyx'] ['src/obitools/align/_nws.pyx'] ['src/obitools/align/_dynamic.pyx'] ['src/obitools/align/_codonnws.pyx'] ['src/obitools/fasta/_fasta.pyx'] ['src/obitools/utils/_utils.pyx'] ['src/obitools/tools/_solexapairend.pyx'] ['src/obitools/options/_options.pyx'] ['src/obitools/options/_bioseqfilter.pyx'] running install Running obidistutils install process running build Running obidistutils build process running littlebigman building 'littlebigman' program x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c distutils.ext/src/littlebigman.c -o build/temp.linux-x86_64-3.9/distutils.ext/src/littlebigman.o -msse2 distutils.ext/src/littlebigman.c: In function 'main': distutils.ext/src/littlebigman.c:20:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 20 | else | ^~~~ distutils.ext/src/littlebigman.c:23:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 23 | return 0; | ^~~~~~ x86_64-linux-gnu-gcc -pthread build/temp.linux-x86_64-3.9/distutils.ext/src/littlebigman.o -o build/temp.linux-x86_64-3.9/littlebigman Your CPU is in mode : b'-DLITTLE_END' running build_py running build_ext obitools._obitools src/obitools/_obitools.pyx ok obitools.fastq._fastq src/obitools/fastq/_fastq.pyx ok obitools.format._format src/obitools/format/_format.pyx ok obitools.format.genericparser._genericparser src/obitools/format/genericparser/_genericparser.pyx ok obitools.word._binary src/obitools/word/_binary.pyx ok obitools.word._readindex src/obitools/word/_readindex.pyx ok obitools.profile._profile src/obitools/profile/_profile.pyx ok obitools.align._qsrassemble src/obitools/align/_qsrassemble.pyx ok obitools.align._qsassemble src/obitools/align/_qsassemble.pyx ok obitools.align._lcs src/obitools/align/_lcs.pyx ok obitools.align._lcs src/obitools/align/_lcs.ext.1.c ok obitools.align._lcs src/obitools/align/_lcs.ext.2.c ok obitools.align._lcs src/obitools/align/_lcs.ext.3.c ok obitools.align._lcs src/obitools/align/_lcs.ext.4.c ok obitools.align._freeendgapfm src/obitools/align/_freeendgapfm.pyx ok obitools.align._profilenws src/obitools/align/_profilenws.pyx ok obitools.align._nwsdnabyprot src/obitools/align/_nwsdnabyprot.pyx ok obitools.align._assemble src/obitools/align/_assemble.pyx ok obitools.align._rassemble src/obitools/align/_rassemble.pyx ok obitools.align._upperbond src/obitools/align/_upperbond.pyx ok obitools.align._upperbond src/obitools/align/_upperbond.ext.1.c ok obitools.align._gprofilenws src/obitools/align/_gprofilenws.pyx ok obitools.align._freeendgap src/obitools/align/_freeendgap.pyx ok obitools.align._nws src/obitools/align/_nws.pyx ok obitools.align._dynamic src/obitools/align/_dynamic.pyx ok obitools.align._codonnws src/obitools/align/_codonnws.pyx ok obitools.fasta._fasta src/obitools/fasta/_fasta.pyx ok obitools.utils._utils src/obitools/utils/_utils.pyx ok obitools.tools._solexapairend src/obitools/tools/_solexapairend.pyx ok obitools.options._options src/obitools/options/_options.pyx ok obitools.options._bioseqfilter src/obitools/options/_bioseqfilter.pyx ok #####> ['src/obitools/_obitools.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/_obitools.c' Cython extension (up-to-date) #####> ['src/obitools/fastq/_fastq.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/fastq/_fastq.c' Cython extension (up-to-date) #####> ['src/obitools/format/_format.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/format/_format.c' Cython extension (up-to-date) #####> ['src/obitools/format/genericparser/_genericparser.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/format/genericparser/_genericparser.c' Cython extension (up-to-date) #####> ['src/obitools/word/_binary.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/word/_binary.c' Cython extension (up-to-date) #####> ['src/obitools/word/_readindex.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/word/_readindex.c' Cython extension (up-to-date) #####> ['src/obitools/profile/_profile.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/profile/_profile.c' Cython extension (up-to-date) #####> ['src/obitools/align/_qsrassemble.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/align/_qsrassemble.c' Cython extension (up-to-date) #####> ['src/obitools/align/_qsassemble.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/align/_qsassemble.c' Cython extension (up-to-date) #####> ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.4.c'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/align/_lcs.c' Cython extension (up-to-date) #####> ['src/obitools/align/_freeendgapfm.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/align/_freeendgapfm.c' Cython extension (up-to-date) #####> ['src/obitools/align/_profilenws.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/align/_profilenws.c' Cython extension (up-to-date) #####> ['src/obitools/align/_nwsdnabyprot.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/align/_nwsdnabyprot.c' Cython extension (up-to-date) #####> ['src/obitools/align/_assemble.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/align/_assemble.c' Cython extension (up-to-date) #####> ['src/obitools/align/_rassemble.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/align/_rassemble.c' Cython extension (up-to-date) #####> ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/align/_upperbond.c' Cython extension (up-to-date) #####> ['src/obitools/align/_gprofilenws.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/align/_gprofilenws.c' Cython extension (up-to-date) #####> ['src/obitools/align/_freeendgap.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/align/_freeendgap.c' Cython extension (up-to-date) #####> ['src/obitools/align/_nws.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/align/_nws.c' Cython extension (up-to-date) #####> ['src/obitools/align/_dynamic.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/align/_dynamic.c' Cython extension (up-to-date) #####> ['src/obitools/align/_codonnws.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/align/_codonnws.c' Cython extension (up-to-date) #####> ['src/obitools/fasta/_fasta.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/fasta/_fasta.c' Cython extension (up-to-date) #####> ['src/obitools/utils/_utils.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/utils/_utils.c' Cython extension (up-to-date) #####> ['src/obitools/tools/_solexapairend.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/tools/_solexapairend.c' Cython extension (up-to-date) #####> ['src/obitools/options/_options.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/options/_options.c' Cython extension (up-to-date) #####> ['src/obitools/options/_bioseqfilter.pyx'] skipping 'build/temp.linux-x86_64-3.9/pyrex/obitools/options/_bioseqfilter.c' Cython extension (up-to-date) running build_scripts running install_lib creating /build/obitools-1.2.13+dfsg/debian/obitools/usr creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9 creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/__pycache__/SVGdraw.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/__pycache__/zipfile.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/__pycache__/gzip.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/_obitools.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/statistics creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/statistics/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/statistics/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/statistics/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/statistics/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/statistics copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/statistics/hypergeometric.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/statistics copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/statistics/noncentralhypergeo.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/statistics creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tree creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tree/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tree/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tree/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tree/unrooted.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tree copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tree/layout.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tree copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tree/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tree copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tree/svg.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tree copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tree/dot.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tree copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tree/newick.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tree creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/options creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/options/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/options/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/options/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/options/_bioseqfilter.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/options copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/options/_options.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/options copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/options/bioseqcutter.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/options copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/options/taxonomyfilter.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/options copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/options/bioseqfilter.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/options copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/options/bioseqedittag.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/options copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/options/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/options creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/eutils creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/eutils/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/eutils/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/eutils/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/eutils/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/eutils creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/sequenceencoder creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/sequenceencoder/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/sequenceencoder/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/sequenceencoder/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/sequenceencoder/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/sequenceencoder creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/unit creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/unit/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/unit/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/unit/__pycache__ creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/unit/obitools creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/unit/obitools/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/unit/obitools/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/unit/obitools/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/unit/obitools/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/unit/obitools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/unit/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/unit creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/parallel creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/parallel/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/parallel/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/parallel/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/parallel/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/parallel copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/parallel/jobqueue.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/parallel creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tools creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tools/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tools/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tools/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tools/_solexapairend.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tools/solexapairend.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tools/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tools creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/phylogeny creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/phylogeny/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/phylogeny/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/phylogeny/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/phylogeny/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/phylogeny copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/phylogeny/newick.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/phylogeny creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/metabarcoding creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/metabarcoding/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/metabarcoding/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/metabarcoding/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/metabarcoding/options.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/metabarcoding copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/metabarcoding/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/metabarcoding creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obischemas creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obischemas/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obischemas/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obischemas/__pycache__ creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obischemas/kb creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obischemas/kb/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obischemas/kb/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obischemas/kb/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obischemas/kb/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obischemas/kb copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obischemas/kb/extern.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obischemas/kb copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obischemas/options.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obischemas copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obischemas/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obischemas creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/solexa creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/solexa/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/solexa/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/solexa/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/solexa/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/solexa creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/location creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/location/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/location/__pycache__/feature.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/location/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/location/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/location/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/location/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/location copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/location/feature.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/location creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fnaqual creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fnaqual/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/fnaqual/__pycache__/quality.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fnaqual/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/fnaqual/__pycache__/fasta.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fnaqual/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/fnaqual/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fnaqual/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/fnaqual/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fnaqual copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/fnaqual/fasta.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fnaqual copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/fnaqual/quality.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fnaqual creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/barcodecoverage creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/barcodecoverage/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/barcodecoverage/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/barcodecoverage/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/barcodecoverage/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/barcodecoverage copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/barcodecoverage/findErrors.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/barcodecoverage copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/barcodecoverage/readFiles.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/barcodecoverage copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/barcodecoverage/calcBc.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/barcodecoverage copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/barcodecoverage/drawBcTree.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/barcodecoverage copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/barcodecoverage/writeBcTree.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/barcodecoverage creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/__pycache__/tree.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/__pycache__/dag.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/__pycache__/rootedtree.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/__pycache__ creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/layout creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/layout/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/layout/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/layout/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/layout/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/layout copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/layout/radialtree.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/layout creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/algorithms creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/algorithms/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/algorithms/__pycache__/component.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/algorithms/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/algorithms/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/algorithms/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/algorithms/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/algorithms copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/algorithms/component.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/algorithms copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/algorithms/clique.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/algorithms copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/algorithms/compact.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/algorithms copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/tree.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/dag.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/graph/rootedtree.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecotag creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecotag/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecotag/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecotag/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecotag/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecotag copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecotag/parser.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecotag creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/goa creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/goa/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/goa/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/goa/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/goa/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/goa copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/goa/parser.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/goa creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/utils creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/utils/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/utils/__pycache__/bioseq.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/utils/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/utils/__pycache__/iterator.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/utils/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/utils/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/utils/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/utils/_utils.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/utils copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/utils/iterator.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/utils copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/utils/bioseq.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/utils copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/utils/crc64.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/utils copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/utils/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/utils creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fasta creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fasta/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/fasta/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fasta/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/fasta/_fasta.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fasta copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/fasta/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fasta creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/thermo creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/thermo/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/thermo/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/thermo/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/thermo/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/thermo creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/dnahash creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/dnahash/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/dnahash/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/dnahash/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/dnahash/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/dnahash creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/carto creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/carto/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/carto/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/carto/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/carto/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/carto creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obo creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obo/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obo/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obo/__pycache__ creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obo/go creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obo/go/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obo/go/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obo/go/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obo/go/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obo/go copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obo/go/parser.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obo/go copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obo/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obo copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/obo/parser.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obo creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/align creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/align/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/align/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_codonnws.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_dynamic.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_nws.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_freeendgap.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_gprofilenws.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_upperbond.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_rassemble.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_assemble.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_nwsdnabyprot.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_profilenws.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_freeendgapfm.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_lcs.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_qsassemble.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/_qsrassemble.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/homopolymere.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/ssearch.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/align/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/align creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecopcr creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecopcr/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecopcr/__pycache__/annotation.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecopcr/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecopcr/__pycache__/sequence.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecopcr/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecopcr/__pycache__/taxonomy.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecopcr/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecopcr/__pycache__/options.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecopcr/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecopcr/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecopcr/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecopcr/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecopcr copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecopcr/annotation.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecopcr copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecopcr/options.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecopcr copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecopcr/sequence.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecopcr copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecopcr/taxonomy.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecopcr creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/profile creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/profile/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/profile/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/profile/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/profile/_profile.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/profile copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/profile/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/profile creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/table creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/table/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/table/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/table/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/table/csv.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/table copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/table/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/table creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/__pycache__ creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/blastdb creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/blastdb/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb/blastdb/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/blastdb/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb/blastdb/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/blastdb creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/embl creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/embl/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb/embl/__pycache__/parser.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/embl/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb/embl/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/embl/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb/embl/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/embl copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb/embl/parser.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/embl creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/genbank creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/genbank/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb/genbank/__pycache__/parser.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/genbank/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb/genbank/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/genbank/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb/genbank/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/genbank copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb/genbank/ncbi.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/genbank copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb/genbank/parser.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/genbank copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb/dnaparser.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/seqdb/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tagmatcher creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tagmatcher/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tagmatcher/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tagmatcher/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tagmatcher/options.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tagmatcher copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tagmatcher/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tagmatcher copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/tagmatcher/parser.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tagmatcher creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/interactive creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/interactive/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/interactive/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/interactive/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/interactive/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/interactive creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/alignment creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/alignment/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/alignment/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/alignment/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/alignment/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/alignment copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/alignment/ace.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/alignment creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/word creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/word/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/word/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/word/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/word/_readindex.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/word copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/word/_binary.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/word copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/word/options.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/word copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/word/predicate.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/word copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/word/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/word creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/__pycache__/options.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/_format.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/ontology creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/ontology/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/ontology/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/ontology/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/ontology/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/ontology copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/ontology/go_obo.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/ontology creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/sequence creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/sequence/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/sequence/__pycache__/fastq.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/sequence/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/sequence/__pycache__/fasta.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/sequence/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/sequence/__pycache__/fnaqual.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/sequence/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/sequence/__pycache__/genbank.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/sequence/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/sequence/__pycache__/embl.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/sequence/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/sequence/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/sequence/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/sequence/embl.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/sequence copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/sequence/fastq.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/sequence copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/sequence/tagmatcher.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/sequence copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/sequence/genbank.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/sequence copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/sequence/fasta.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/sequence copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/sequence/fnaqual.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/sequence copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/sequence/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/sequence creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/genericparser creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/genericparser/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/genericparser/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/genericparser/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/genericparser/_genericparser.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/genericparser copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/genericparser/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/genericparser copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/format/options.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/blast creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/blast/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/blast/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/blast/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/blast/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/blast creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/distances creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/distances/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/distances/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/distances/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/distances/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/distances copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/distances/observed.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/distances copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/distances/phylip.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/distances copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/distances/r.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/distances creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fastq creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fastq/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/fastq/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fastq/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/fastq/_fastq.cpython-39-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fastq copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/fastq/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fastq creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecobarcode creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecobarcode/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecobarcode/__pycache__/__init__.cpython-39.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecobarcode/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecobarcode/options.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecobarcode copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecobarcode/databases.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecobarcode copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecobarcode/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecobarcode copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecobarcode/ecotag.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecobarcode copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecobarcode/rawdata.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecobarcode copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/ecobarcode/taxonomy.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecobarcode copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/version.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/decorator.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/collections.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/fast.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/gzip.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/sample.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/solexaPairEnd.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/svg.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/zipfile.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.9_obitools/build/obitools/SVGdraw.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/statistics/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/statistics/hypergeometric.py to hypergeometric.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/statistics/noncentralhypergeo.py to noncentralhypergeo.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tree/unrooted.py to unrooted.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tree/layout.py to layout.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tree/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tree/svg.py to svg.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tree/dot.py to dot.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tree/newick.py to newick.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/options/bioseqcutter.py to bioseqcutter.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/options/taxonomyfilter.py to taxonomyfilter.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/options/bioseqfilter.py to bioseqfilter.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/options/bioseqedittag.py to bioseqedittag.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/options/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/eutils/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/sequenceencoder/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/unit/obitools/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/unit/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/parallel/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/parallel/jobqueue.py to jobqueue.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tools/solexapairend.py to solexapairend.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tools/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/phylogeny/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/phylogeny/newick.py to newick.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/metabarcoding/options.py to options.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/metabarcoding/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obischemas/kb/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obischemas/kb/extern.py to extern.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obischemas/options.py to options.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obischemas/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/solexa/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/location/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/location/feature.py to feature.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fnaqual/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fnaqual/fasta.py to fasta.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fnaqual/quality.py to quality.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/barcodecoverage/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/barcodecoverage/findErrors.py to findErrors.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/barcodecoverage/readFiles.py to readFiles.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/barcodecoverage/calcBc.py to calcBc.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/barcodecoverage/drawBcTree.py to drawBcTree.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/barcodecoverage/writeBcTree.py to writeBcTree.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/layout/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/layout/radialtree.py to radialtree.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/algorithms/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/algorithms/component.py to component.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/algorithms/clique.py to clique.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/algorithms/compact.py to compact.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/tree.py to tree.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/dag.py to dag.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/graph/rootedtree.py to rootedtree.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecotag/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecotag/parser.py to parser.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/goa/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/goa/parser.py to parser.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/utils/iterator.py to iterator.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/utils/bioseq.py to bioseq.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/utils/crc64.py to crc64.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/utils/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fasta/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/thermo/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/dnahash/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/carto/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obo/go/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obo/go/parser.py to parser.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obo/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/obo/parser.py to parser.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/align/homopolymere.py to homopolymere.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/align/ssearch.py to ssearch.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/align/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecopcr/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecopcr/annotation.py to annotation.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecopcr/options.py to options.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecopcr/sequence.py to sequence.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecopcr/taxonomy.py to taxonomy.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/profile/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/table/csv.py to csv.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/table/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/blastdb/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/embl/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/embl/parser.py to parser.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/genbank/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/genbank/ncbi.py to ncbi.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/genbank/parser.py to parser.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/dnaparser.py to dnaparser.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/seqdb/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tagmatcher/options.py to options.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tagmatcher/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/tagmatcher/parser.py to parser.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/interactive/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/alignment/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/alignment/ace.py to ace.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/word/options.py to options.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/word/predicate.py to predicate.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/word/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/ontology/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/ontology/go_obo.py to go_obo.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/sequence/embl.py to embl.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/sequence/fastq.py to fastq.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/sequence/tagmatcher.py to tagmatcher.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/sequence/genbank.py to genbank.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/sequence/fasta.py to fasta.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/sequence/fnaqual.py to fnaqual.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/sequence/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/genericparser/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/format/options.py to options.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/blast/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/distances/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/distances/observed.py to observed.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/distances/phylip.py to phylip.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/distances/r.py to r.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fastq/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecobarcode/options.py to options.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecobarcode/databases.py to databases.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecobarcode/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecobarcode/ecotag.py to ecotag.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecobarcode/rawdata.py to rawdata.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/ecobarcode/taxonomy.py to taxonomy.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/version.py to version.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/decorator.py to decorator.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/collections.py to collections.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/fast.py to fast.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/gzip.py to gzip.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/sample.py to sample.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/solexaPairEnd.py to solexaPairEnd.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/svg.py to svg.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/zipfile.py to zipfile.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/__init__.py to __init__.cpython-39.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/obitools/SVGdraw.py to SVGdraw.cpython-39.pyc running install_egg_info running egg_info creating src/OBITools.egg-info writing src/OBITools.egg-info/PKG-INFO writing dependency_links to src/OBITools.egg-info/dependency_links.txt writing requirements to src/OBITools.egg-info/requires.txt writing top-level names to src/OBITools.egg-info/top_level.txt writing manifest file 'src/OBITools.egg-info/SOURCES.txt' reading manifest file 'src/OBITools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.pem' under directory 'distutils.ext' writing manifest file 'src/OBITools.egg-info/SOURCES.txt' Copying src/OBITools.egg-info to /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.9/dist-packages/OBITools-1.2.13.egg-info Skipping SOURCES.txt running install_scripts creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obiannotate -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obicomplement -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obigrep -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obisort -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obitail -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/ali2consensus -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/ecodbtaxstat -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/ecotag -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/ecotaxspecificity -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/ecotaxstat -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/extractreads -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/extractreads2 -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/illuminapairedend -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/ngsfilter -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obiaddtaxids -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obiclean -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obiconvert -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obicount -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obicut -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obidistribute -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obiextract -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obihead -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obijoinpairedend -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obipr2 -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obisample -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obiselect -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obisilva -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obisplit -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obistat -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obisubset -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obitab -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obitaxonomy -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/obiuniq -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.9/oligotag -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiannotate to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obicomplement to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obigrep to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisort to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obitail to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ali2consensus to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ecodbtaxstat to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ecotag to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ecotaxspecificity to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ecotaxstat to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/extractreads to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/extractreads2 to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/illuminapairedend to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ngsfilter to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiaddtaxids to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiclean to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiconvert to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obicount to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obicut to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obidistribute to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiextract to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obihead to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obijoinpairedend to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obipr2 to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisample to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiselect to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisilva to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisplit to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obistat to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisubset to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obitab to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obitaxonomy to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiuniq to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/oligotag to 755 make[1]: Leaving directory '/build/obitools-1.2.13+dfsg' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/obitools-1.2.13+dfsg' dh_installman find debian -name "ecoPCR.1*" -delete find debian -name "ecofind.1*" -delete make[1]: Leaving directory '/build/obitools-1.2.13+dfsg' dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -O--buildsystem=pybuild dh_strip -O--buildsystem=pybuild dh_makeshlibs -O--buildsystem=pybuild dh_shlibdeps -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package obitools: substitution variable ${sphinxdoc:Depends} used, but is not defined dpkg-gencontrol: warning: package obitools: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: Depends field of package obitools: substitution variable ${sphinxdoc:Depends} used, but is not defined dpkg-gencontrol: warning: package obitools: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'obitools-dbgsym' in '../obitools-dbgsym_1.2.13+dfsg-3_amd64.deb'. dpkg-deb: building package 'obitools' in '../obitools_1.2.13+dfsg-3_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../obitools_1.2.13+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3572127/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3572127/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3572127 and its subdirectories I: Current time: Thu Feb 2 21:43:47 +14 2023 I: pbuilder-time-stamp: 1675323827