I: pbuilder: network access will be disabled during build I: Current time: Sun Feb 26 11:23:32 +14 2023 I: pbuilder-time-stamp: 1677360212 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ea-utils_1.1.2+dfsg-6.dsc] I: copying [./ea-utils_1.1.2+dfsg.orig.tar.xz] I: copying [./ea-utils_1.1.2+dfsg-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.JuHwYb7O/trustedkeys.kbx': General error gpgv: Signature made Sat Dec 12 10:56:58 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ea-utils_1.1.2+dfsg-6.dsc dpkg-source: info: extracting ea-utils in ea-utils-1.1.2+dfsg dpkg-source: info: unpacking ea-utils_1.1.2+dfsg.orig.tar.xz dpkg-source: info: unpacking ea-utils_1.1.2+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying name-space-conflict.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3159371/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3159371/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3159371/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=48a06e3e307140f59cfa663f1182b673 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3159371 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.QzQWc75QlW/pbuilderrc_t3Rq --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.QzQWc75QlW/b2 --logfile b2/build.log ea-utils_1.1.2+dfsg-6.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 5.15.0-0.bpo.2-amd64 #1 SMP Debian 5.15.5-2~bpo11+1 (2022-01-02) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 5 2021 bash -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash -rwxr-xr-x 1 root root 113664 Sep 24 2020 date -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd -rwxr-xr-x 1 root root 93936 Sep 24 2020 df -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir -rwxr-xr-x 1 root root 84440 Jul 29 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 24 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 29 2021 findmnt -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 3 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln -rwxr-xr-x 1 root root 56952 Feb 8 2020 login -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls -rwxr-xr-x 1 root root 149736 Jul 29 2021 lsblk -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 29 2021 more -rwsr-xr-x 1 root root 55528 Jul 29 2021 mount -rwxr-xr-x 1 root root 18664 Jul 29 2021 mountpoint -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd lrwxrwxrwx 1 root root 4 Aug 5 2021 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Feb 26 11:23 sh -> bash lrwxrwxrwx 1 root root 4 Feb 24 05:48 sh.distrib -> dash -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty -rwsr-xr-x 1 root root 71912 Jul 29 2021 su -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch -rwxr-xr-x 1 root root 39680 Sep 24 2020 true -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 29 2021 umount -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 29 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew I: user script /srv/workspace/pbuilder/3159371/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libbam-dev, zlib1g-dev, libgsl-dev, libsparsehash-dev, r-cran-hmisc dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbam-dev; however: Package libbam-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libsparsehash-dev; however: Package libsparsehash-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-hmisc; however: Package r-cran-hmisc is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbam-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libc-ares2{a} libcairo2{a} libcurl4{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libgsl-dev{a} libgsl25{a} libgslcblas0{a} libharfbuzz0b{a} libice6{a} libicu67{a} libjbig0{a} libjpeg62-turbo{a} libjs-bootstrap{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-mathjax{a} liblapack3{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libnghttp2-14{a} libnode72{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpsl5{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libsparsehash-dev{a} libssh2-1{a} libsub-override-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtk8.6{a} libtool{a} libuchardet0{a} libuv1{a} libwebp6{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxss1{a} libxt6{a} m4{a} man-db{a} node-highlight.js{a} node-normalize.css{a} nodejs{a} openssl{a} po-debconf{a} r-base-core{a} r-cran-acepack{a} r-cran-assertthat{a} r-cran-backports{a} r-cran-base64enc{a} r-cran-brio{a} r-cran-callr{a} r-cran-checkmate{a} r-cran-chron{a} r-cran-cli{a} r-cran-cluster{a} r-cran-colorspace{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-data.table{a} r-cran-desc{a} r-cran-diffobj{a} r-cran-digest{a} r-cran-dplyr{a} r-cran-ellipsis{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-foreign{a} r-cran-formula{a} r-cran-generics{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-highr{a} r-cran-hmisc{a} r-cran-htmltable{a} r-cran-htmltools{a} r-cran-htmlwidgets{a} r-cran-isoband{a} r-cran-jpeg{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-latticeextra{a} r-cran-lifecycle{a} r-cran-magrittr{a} r-cran-markdown{a} r-cran-mass{a} r-cran-matrix{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-nnet{a} r-cran-pillar{a} r-cran-pkgbuild{a} r-cran-pkgconfig{a} r-cran-pkgload{a} r-cran-png{a} r-cran-praise{a} r-cran-prettyunits{a} r-cran-processx{a} r-cran-ps{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rcolorbrewer{a} r-cran-rematch2{a} r-cran-rlang{a} r-cran-rpart{a} r-cran-rprojroot{a} r-cran-rstudioapi{a} r-cran-scales{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-survival{a} r-cran-testthat{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridis{a} r-cran-viridislite{a} r-cran-waldo{a} r-cran-withr{a} r-cran-xfun{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl lynx nodejs-doc publicsuffix r-base-dev r-cran-bit64 r-cran-cliapp r-cran-codetools r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-fastmatch r-cran-hexbin r-cran-hms r-cran-lubridate r-cran-mapproj r-cran-mockery r-cran-mockr r-cran-quantreg r-cran-rmarkdown r-cran-rsqlite r-cran-sp r-cran-testit r-cran-tikzdevice r-cran-tinytex r-cran-vdiffr r-cran-xml2 r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 200 newly installed, 0 to remove and 0 not upgraded. Need to get 140 MB of archives. After unpacking 348 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 node-normalize.css all 8.0.1-3 [12.5 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1k-1+deb11u1 [851 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1 [418 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 fontconfig amd64 2.13.1-4.2 [417 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-2 [164 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 libbam-dev amd64 0.1.19+dfsg-2 [118 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3 [153 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1 [108 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libc-ares2 amd64 1.17.1-1+deb11u1 [102 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 libpixman-1-0 amd64 0.40.0-1 [543 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1 [311 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1 [772 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libxcb-render0 amd64 1.14-3 [111 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 libxcb-shm0 amd64 1.14-3 [101 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 libcairo2 amd64 1.16.0-5 [694 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3 [232 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get: 69 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 71 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get: 72 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u1 [341 kB] Get: 73 http://deb.debian.org/debian bullseye/main amd64 libdatrie1 amd64 0.2.13-1 [42.7 kB] Get: 74 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get: 75 http://deb.debian.org/debian bullseye/main amd64 libfribidi0 amd64 1.0.8-2 [64.8 kB] Get: 76 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get: 77 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1 [1370 kB] Get: 78 http://deb.debian.org/debian bullseye/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get: 79 http://deb.debian.org/debian bullseye/main amd64 libgslcblas0 amd64 2.6+dfsg-2 [102 kB] Get: 80 http://deb.debian.org/debian bullseye/main amd64 libgsl25 amd64 2.6+dfsg-2 [934 kB] Get: 81 http://deb.debian.org/debian bullseye/main amd64 libgsl-dev amd64 2.6+dfsg-2 [1123 kB] Get: 82 http://deb.debian.org/debian bullseye/main amd64 libharfbuzz0b amd64 2.7.4-1 [1471 kB] Get: 83 http://deb.debian.org/debian bullseye/main amd64 x11-common all 1:7.7+22 [252 kB] Get: 84 http://deb.debian.org/debian bullseye/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get: 85 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get: 86 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get: 87 http://deb.debian.org/debian bullseye/main amd64 libjs-bootstrap all 3.4.1+dfsg-2 [173 kB] Get: 88 http://deb.debian.org/debian bullseye/main amd64 libjs-highlight.js all 9.18.5+dfsg1-1 [397 kB] Get: 89 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 90 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-datatables all 1.10.21+dfsg-2+deb11u1 [138 kB] Get: 91 http://deb.debian.org/debian bullseye/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 92 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3 [2166 kB] Get: 93 http://deb.debian.org/debian bullseye/main amd64 libuv1 amd64 1.40.0-2 [132 kB] Get: 94 http://deb.debian.org/debian bullseye/main amd64 libnode72 amd64 12.22.5~dfsg-2~11u1 [8333 kB] Get: 95 http://deb.debian.org/debian bullseye/main amd64 libthai-data all 0.1.28-3 [170 kB] Get: 96 http://deb.debian.org/debian bullseye/main amd64 libthai0 amd64 0.1.28-3 [54.2 kB] Get: 97 http://deb.debian.org/debian bullseye/main amd64 libpango-1.0-0 amd64 1.46.2-3 [191 kB] Get: 98 http://deb.debian.org/debian bullseye/main amd64 libpangoft2-1.0-0 amd64 1.46.2-3 [62.2 kB] Get: 99 http://deb.debian.org/debian bullseye/main amd64 libpangocairo-1.0-0 amd64 1.46.2-3 [50.6 kB] Get: 100 http://deb.debian.org/debian bullseye/main amd64 libpaper1 amd64 1.1.28+b1 [21.6 kB] Get: 101 http://deb.debian.org/debian bullseye/main amd64 libpaper-utils amd64 1.1.28+b1 [18.3 kB] Get: 102 http://deb.debian.org/debian bullseye/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 103 http://deb.debian.org/debian bullseye/main amd64 libsparsehash-dev all 2.0.3-2 [76.8 kB] Get: 104 http://deb.debian.org/debian bullseye/main amd64 libtcl8.6 amd64 8.6.11+dfsg-1 [1018 kB] Get: 105 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1 [258 kB] Get: 106 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1 [289 kB] Get: 107 http://deb.debian.org/debian bullseye/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get: 108 http://deb.debian.org/debian bullseye/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get: 109 http://deb.debian.org/debian bullseye/main amd64 libtk8.6 amd64 8.6.11-2 [780 kB] Get: 110 http://deb.debian.org/debian bullseye/main amd64 libxt6 amd64 1:1.2.0-1 [189 kB] Get: 111 http://deb.debian.org/debian bullseye/main amd64 nodejs amd64 12.22.5~dfsg-2~11u1 [147 kB] Get: 112 http://deb.debian.org/debian bullseye/main amd64 node-highlight.js all 9.18.5+dfsg1-1 [333 kB] Get: 113 http://deb.debian.org/debian bullseye/main amd64 zip amd64 3.0-12 [232 kB] Get: 114 http://deb.debian.org/debian bullseye/main amd64 unzip amd64 6.0-26 [171 kB] Get: 115 http://deb.debian.org/debian bullseye/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 116 http://deb.debian.org/debian bullseye/main amd64 r-base-core amd64 4.0.4-1 [25.1 MB] Get: 117 http://deb.debian.org/debian bullseye/main amd64 r-cran-acepack amd64 1.4.1-2+b5 [59.7 kB] Get: 118 http://deb.debian.org/debian bullseye/main amd64 r-cran-assertthat all 0.2.1-2 [56.5 kB] Get: 119 http://deb.debian.org/debian bullseye/main amd64 r-cran-backports amd64 1.2.1-1 [89.2 kB] Get: 120 http://deb.debian.org/debian bullseye/main amd64 r-cran-base64enc amd64 0.1-3-3 [27.9 kB] Get: 121 http://deb.debian.org/debian bullseye/main amd64 r-cran-brio amd64 1.1.1-1 [31.7 kB] Get: 122 http://deb.debian.org/debian bullseye/main amd64 r-cran-ps amd64 1.5.0-1 [277 kB] Get: 123 http://deb.debian.org/debian bullseye/main amd64 r-cran-r6 all 2.5.0-1 [104 kB] Get: 124 http://deb.debian.org/debian bullseye/main amd64 r-cran-processx amd64 3.4.5-1 [295 kB] Get: 125 http://deb.debian.org/debian bullseye/main amd64 r-cran-callr all 3.5.1-1 [386 kB] Get: 126 http://deb.debian.org/debian bullseye/main amd64 r-cran-checkmate amd64 2.0.0-1+b1 [601 kB] Get: 127 http://deb.debian.org/debian bullseye/main amd64 r-cran-chron amd64 2.3-56-1 [195 kB] Get: 128 http://deb.debian.org/debian bullseye/main amd64 r-cran-glue amd64 1.4.2-1 [138 kB] Get: 129 http://deb.debian.org/debian bullseye/main amd64 r-cran-cli all 2.3.0-1 [480 kB] Get: 130 http://deb.debian.org/debian bullseye/main amd64 r-cran-cluster amd64 2.1.1-1 [553 kB] Get: 131 http://deb.debian.org/debian bullseye/main amd64 r-cran-colorspace amd64 2.0-0+dfsg-1 [1684 kB] Get: 132 http://deb.debian.org/debian bullseye/main amd64 r-cran-cpp11 all 0.2.6-1 [144 kB] Get: 133 http://deb.debian.org/debian bullseye/main amd64 r-cran-crayon all 1.4.0-1 [143 kB] Get: 134 http://deb.debian.org/debian bullseye/main amd64 r-cran-data.table amd64 1.13.6+dfsg-1 [1715 kB] Get: 135 http://deb.debian.org/debian bullseye/main amd64 r-cran-rprojroot all 2.0.2-1 [114 kB] Get: 136 http://deb.debian.org/debian bullseye/main amd64 r-cran-desc all 1.2.0-3 [301 kB] Get: 137 http://deb.debian.org/debian bullseye/main amd64 r-cran-diffobj amd64 0.3.2-1 [1069 kB] Get: 138 http://deb.debian.org/debian bullseye/main amd64 r-cran-digest amd64 0.6.27-1 [192 kB] Get: 139 http://deb.debian.org/debian bullseye/main amd64 r-cran-rlang amd64 0.4.10-1 [1176 kB] Get: 140 http://deb.debian.org/debian bullseye/main amd64 r-cran-ellipsis amd64 0.3.1-1 [31.7 kB] Get: 141 http://deb.debian.org/debian bullseye/main amd64 r-cran-generics all 0.1.0-1 [73.5 kB] Get: 142 http://deb.debian.org/debian bullseye/main amd64 r-cran-lifecycle all 0.2.0-2 [93.2 kB] Get: 143 http://deb.debian.org/debian bullseye/main amd64 r-cran-magrittr amd64 2.0.1-1 [198 kB] Get: 144 http://deb.debian.org/debian bullseye/main amd64 r-cran-fansi amd64 0.4.2-1 [345 kB] Get: 145 http://deb.debian.org/debian bullseye/main amd64 r-cran-utf8 amd64 1.1.4-2 [131 kB] Get: 146 http://deb.debian.org/debian bullseye/main amd64 r-cran-vctrs amd64 0.3.6-1 [1107 kB] Get: 147 http://deb.debian.org/debian bullseye/main amd64 r-cran-pillar all 1.4.7-1 [227 kB] Get: 148 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 149 http://deb.debian.org/debian bullseye/main amd64 r-cran-tibble amd64 3.0.6+dfsg-1 [416 kB] Get: 150 http://deb.debian.org/debian bullseye/main amd64 r-cran-purrr amd64 0.3.4-1+b1 [398 kB] Get: 151 http://deb.debian.org/debian bullseye/main amd64 r-cran-tidyselect amd64 1.1.0+dfsg-1 [192 kB] Get: 152 http://deb.debian.org/debian bullseye/main amd64 r-cran-dplyr amd64 1.0.4-1 [1143 kB] Get: 153 http://deb.debian.org/debian bullseye/main amd64 r-cran-evaluate all 0.14-2 [81.1 kB] Get: 154 http://deb.debian.org/debian bullseye/main amd64 r-cran-farver amd64 2.0.3-1+b1 [1393 kB] Get: 155 http://deb.debian.org/debian bullseye/main amd64 r-cran-foreign amd64 0.8.81-1 [253 kB] Get: 156 http://deb.debian.org/debian bullseye/main amd64 r-cran-formula all 1.2-4-1 [175 kB] Get: 157 http://deb.debian.org/debian bullseye/main amd64 r-cran-gtable all 0.3.0+dfsg-2 [163 kB] Get: 158 http://deb.debian.org/debian bullseye/main amd64 r-cran-jsonlite amd64 1.7.2+dfsg-1 [447 kB] Get: 159 http://deb.debian.org/debian bullseye/main amd64 r-cran-prettyunits all 1.1.1-2 [39.1 kB] Get: 160 http://deb.debian.org/debian bullseye/main amd64 r-cran-withr all 2.4.1-1 [210 kB] Get: 161 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgbuild all 1.2.0-1 [146 kB] Get: 162 http://deb.debian.org/debian bullseye/main amd64 r-cran-rstudioapi all 0.13-1 [262 kB] Get: 163 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgload amd64 1.1.0-1 [168 kB] Get: 164 http://deb.debian.org/debian bullseye/main amd64 r-cran-praise all 1.0.0-4 [20.1 kB] Get: 165 http://deb.debian.org/debian bullseye/main amd64 r-cran-rematch2 all 2.1.2-2 [46.3 kB] Get: 166 http://deb.debian.org/debian bullseye/main amd64 r-cran-waldo all 0.2.3-2 [79.3 kB] Get: 167 http://deb.debian.org/debian bullseye/main amd64 r-cran-testthat amd64 3.0.1-1 [1451 kB] Get: 168 http://deb.debian.org/debian bullseye/main amd64 r-cran-isoband amd64 0.2.3-2 [2085 kB] Get: 169 http://deb.debian.org/debian bullseye/main amd64 r-cran-mass amd64 7.3-53.1-1 [1115 kB] Get: 170 http://deb.debian.org/debian bullseye/main amd64 r-cran-lattice amd64 0.20-41-1+b1 [1164 kB] Get: 171 http://deb.debian.org/debian bullseye/main amd64 r-cran-nlme amd64 3.1.152-1 [2241 kB] Get: 172 http://deb.debian.org/debian bullseye/main amd64 r-cran-matrix amd64 1.3-2-1 [3604 kB] Get: 173 http://deb.debian.org/debian bullseye/main amd64 r-cran-mgcv amd64 1.8-34-1 [2998 kB] Get: 174 http://deb.debian.org/debian bullseye/main amd64 r-cran-labeling all 0.4.2-1 [62.7 kB] Get: 175 http://deb.debian.org/debian bullseye/main amd64 r-cran-munsell all 0.5.0-2 [236 kB] Get: 176 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcolorbrewer all 1.1-2-3 [54.4 kB] Get: 177 http://deb.debian.org/debian bullseye/main amd64 r-cran-viridislite all 0.3.0-4 [59.2 kB] Get: 178 http://deb.debian.org/debian bullseye/main amd64 r-cran-scales all 1.1.1-1 [557 kB] Get: 179 http://deb.debian.org/debian bullseye/main amd64 r-cran-ggplot2 all 3.3.3+dfsg-1 [3158 kB] Get: 180 http://deb.debian.org/debian bullseye/main amd64 r-cran-gridextra all 2.3-3 [1024 kB] Get: 181 http://deb.debian.org/debian bullseye/main amd64 r-cran-highr all 0.8+dfsg-2 [40.1 kB] Get: 182 http://deb.debian.org/debian bullseye/main amd64 r-cran-survival amd64 3.2-7-1 [7631 kB] Get: 183 http://deb.debian.org/debian bullseye/main amd64 r-cran-png amd64 0.1-7-4 [40.7 kB] Get: 184 http://deb.debian.org/debian bullseye/main amd64 r-cran-jpeg amd64 0.1-8.1-1+b1 [30.3 kB] Get: 185 http://deb.debian.org/debian bullseye/main amd64 r-cran-latticeextra all 0.6-29-3 [2192 kB] Get: 186 http://deb.debian.org/debian bullseye/main amd64 r-cran-rpart amd64 4.1-15-2+b1 [702 kB] Get: 187 http://deb.debian.org/debian bullseye/main amd64 r-cran-nnet amd64 7.3-15-1 [111 kB] Get: 188 http://deb.debian.org/debian bullseye/main amd64 r-cran-stringi amd64 1.5.3-1 [729 kB] Get: 189 http://deb.debian.org/debian bullseye/main amd64 r-cran-stringr all 1.4.0-2 [199 kB] Get: 190 http://deb.debian.org/debian bullseye/main amd64 r-cran-xfun amd64 0.20-1 [288 kB] Get: 191 http://deb.debian.org/debian bullseye/main amd64 r-cran-mime amd64 0.9-1+b1 [35.5 kB] Get: 192 http://deb.debian.org/debian bullseye/main amd64 r-cran-markdown amd64 1.1+dfsg-1+b1 [125 kB] Get: 193 http://deb.debian.org/debian bullseye/main amd64 r-cran-yaml amd64 2.2.1-1+b1 [104 kB] Get: 194 http://deb.debian.org/debian bullseye/main amd64 r-cran-knitr all 1.31+dfsg-1 [833 kB] Get: 195 http://deb.debian.org/debian bullseye/main amd64 r-cran-htmltools amd64 0.5.1.1-1 [241 kB] Get: 196 http://deb.debian.org/debian bullseye/main amd64 r-cran-htmlwidgets all 1.5.3+dfsg-1 [124 kB] Get: 197 http://deb.debian.org/debian bullseye/main amd64 r-cran-tidyr amd64 1.1.2-1 [786 kB] Get: 198 http://deb.debian.org/debian bullseye/main amd64 r-cran-htmltable all 2.1.0-1 [372 kB] Get: 199 http://deb.debian.org/debian bullseye/main amd64 r-cran-viridis all 0.5.1-3 [1846 kB] Get: 200 http://deb.debian.org/debian bullseye/main amd64 r-cran-hmisc amd64 4.5-0-1 [3181 kB] Fetched 140 MB in 2s (83.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_amd64.deb ... 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Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:amd64 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up nodejs (12.22.5~dfsg-2~11u1) ... update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libxt6:amd64 (1:1.2.0-1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up node-highlight.js (9.18.5+dfsg1-1) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.2-2) ... Setting up libtk8.6:amd64 (8.6.11-2) ... Setting up libpango-1.0-0:amd64 (1.46.2-3) ... Setting up debhelper (13.3.4) ... Setting up libcairo2:amd64 (1.16.0-5) ... Setting up libpangoft2-1.0-0:amd64 (1.46.2-3) ... Setting up libpangocairo-1.0-0:amd64 (1.46.2-3) ... Setting up r-base-core (4.0.4-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.4.0-1) ... Setting up r-cran-gtable (0.3.0+dfsg-2) ... Setting up r-cran-labeling (0.4.2-1) ... Setting up r-cran-lattice (0.20-41-1+b1) ... Setting up r-cran-ps (1.5.0-1) ... Setting up r-cran-nlme (3.1.152-1) ... Setting up r-cran-farver (2.0.3-1+b1) ... Setting up r-cran-formula (1.2-4-1) ... Setting up r-cran-viridislite (0.3.0-4) ... Setting up r-cran-cluster (2.1.1-1) ... Setting up r-cran-nnet (7.3-15-1) ... Setting up r-cran-r6 (2.5.0-1) ... Setting up r-cran-jpeg (0.1-8.1-1+b1) ... Setting up r-cran-chron (2.3-56-1) ... Setting up r-cran-magrittr (2.0.1-1) ... Setting up r-cran-brio (1.1.1-1) ... Setting up r-cran-diffobj (0.3.2-1) ... Setting up r-cran-rlang (0.4.10-1) ... Setting up r-cran-assertthat (0.2.1-2) ... Setting up r-cran-xfun (0.20-1) ... Setting up r-cran-withr (2.4.1-1) ... Setting up r-cran-backports (1.2.1-1) ... Setting up r-cran-processx (3.4.5-1) ... Setting up r-cran-mime (0.9-1+b1) ... Setting up r-cran-praise (1.0.0-4) ... Setting up r-cran-generics (0.1.0-1) ... Setting up r-cran-base64enc (0.1-3-3) ... Setting up r-cran-digest (0.6.27-1) ... Setting up r-cran-yaml (2.2.1-1+b1) ... Setting up r-cran-evaluate (0.14-2) ... Setting up r-cran-highr (0.8+dfsg-2) ... Setting up r-cran-prettyunits (1.1.1-2) ... Setting up r-cran-fansi (0.4.2-1) ... Setting up r-cran-mass (7.3-53.1-1) ... Setting up r-cran-checkmate (2.0.0-1+b1) ... Setting up r-cran-acepack (1.4.1-2+b5) ... Setting up r-cran-data.table (1.13.6+dfsg-1) ... Setting up r-cran-glue (1.4.2-1) ... Setting up r-cran-foreign (0.8.81-1) ... Setting up r-cran-cli (2.3.0-1) ... Setting up r-cran-lifecycle (0.2.0-2) ... Setting up r-cran-rprojroot (2.0.2-1) ... Setting up r-cran-png (0.1-7-4) ... Setting up r-cran-jsonlite (1.7.2+dfsg-1) ... Setting up r-cran-rstudioapi (0.13-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-utf8 (1.1.4-2) ... Setting up r-cran-colorspace (2.0-0+dfsg-1) ... Setting up r-cran-stringi (1.5.3-1) ... Setting up r-cran-markdown (1.1+dfsg-1+b1) ... Setting up r-cran-cpp11 (0.2.6-1) ... Setting up r-cran-rcolorbrewer (1.1-2-3) ... Setting up r-cran-gridextra (2.3-3) ... Setting up r-cran-purrr (0.3.4-1+b1) ... Setting up r-cran-matrix (1.3-2-1) ... Setting up r-cran-htmltools (0.5.1.1-1) ... Setting up r-cran-mgcv (1.8-34-1) ... Setting up r-cran-ellipsis (0.3.1-1) ... Setting up r-cran-stringr (1.4.0-2) ... Setting up r-cran-callr (3.5.1-1) ... Setting up r-cran-desc (1.2.0-3) ... Setting up r-cran-munsell (0.5.0-2) ... Setting up r-cran-survival (3.2-7-1) ... Setting up r-cran-latticeextra (0.6-29-3) ... Setting up r-cran-htmlwidgets (1.5.3+dfsg-1) ... Setting up r-cran-scales (1.1.1-1) ... Setting up r-cran-knitr (1.31+dfsg-1) ... Setting up r-cran-pkgbuild (1.2.0-1) ... Setting up r-cran-vctrs (0.3.6-1) ... Setting up r-cran-pillar (1.4.7-1) ... Setting up r-cran-pkgload (1.1.0-1) ... Setting up r-cran-rpart (4.1-15-2+b1) ... Setting up r-cran-tibble (3.0.6+dfsg-1) ... Setting up r-cran-tidyselect (1.1.0+dfsg-1) ... Setting up r-cran-dplyr (1.0.4-1) ... Setting up r-cran-rematch2 (2.1.2-2) ... Setting up r-cran-waldo (0.2.3-2) ... Setting up r-cran-tidyr (1.1.2-1) ... Setting up r-cran-htmltable (2.1.0-1) ... Setting up r-cran-testthat (3.0.1-1) ... Setting up r-cran-isoband (0.2.3-2) ... Setting up r-cran-ggplot2 (3.3.3+dfsg-1) ... Setting up r-cran-viridis (0.5.1-3) ... Setting up r-cran-hmisc (4.5-0-1) ... Processing triggers for libc-bin (2.31-13+deb11u2) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package hostname: Name or service not known I: Running cd /build/ea-utils-1.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ea-utils_1.1.2+dfsg-6_source.changes dpkg-buildpackage: info: source package ea-utils dpkg-buildpackage: info: source version 1.1.2+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j16 clean make[1]: Entering directory '/build/ea-utils-1.1.2+dfsg' rm -f *.o fastq-mcf fastq-multx fastq-join fastq-stats fastq-clipper sam-stats varcall make[1]: Leaving directory '/build/ea-utils-1.1.2+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j16 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/ea-utils-1.1.2+dfsg' g++ -g -O2 -fdebug-prefix-map=/build/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security fastq-lib.cpp -o fastq-mcf fastq-mcf.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -fdebug-prefix-map=/build/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security fastq-lib.cpp -o fastq-multx fastq-multx.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -fdebug-prefix-map=/build/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security fastq-lib.cpp -o fastq-join fastq-join.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -fdebug-prefix-map=/build/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security fastq-lib.cpp gcModel.c -o fastq-stats fastq-stats.cpp -Wl,-z,relro -Wl,-z,now g++ -g -O2 -fdebug-prefix-map=/build/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security fastq-lib.cpp -o fastq-clipper fastq-clipper.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -fdebug-prefix-map=/build/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security fastq-lib.cpp sam-stats.cpp -lbam -lz -lpthread -o sam-stats -Wl,-z,relro -Wl,-z,now g++ -g -O2 -fdebug-prefix-map=/build/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security fastq-lib.cpp tidx/tidx-lib.cpp -o varcall varcall.cpp -lgsl -lgslcblas -Wl,-z,relro -Wl,-z,now fastq-mcf.c: In function 'int main(int, char**)': fastq-mcf.c:633:23: warning: too many arguments for format [-Wformat-extra-args] 633 | fprintf(stderr, "Warning, corrupt quality for sequence: %s", s, q); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fastq-mcf.c:849:21: warning: too many arguments for format [-Wformat-extra-args] 849 | fprintf(fstat, ", warning end was not reliable\n", ad[a].id, ad[a].seq); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sam-stats.cpp: In function 'int main(int, char**)': sam-stats.cpp:229:29: warning: use of an operand of type 'bool' in 'operator++' is deprecated [-Wdeprecated] 229 | case 'D': ++trackdup; break; | ^~~~~~~~ fastq-mcf.c: In function 'bool arg_int_pair(const char*, int&, int&)': fastq-mcf.c:1657:6: warning: control reaches end of non-void function [-Wreturn-type] 1657 | b=atoi(strchr(optarg, ',')+1); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ sam-stats.cpp: In member function 'int ibucket::operator[](int) const': sam-stats.cpp:140:2: warning: control reaches end of non-void function [-Wreturn-type] 140 | } | ^ fastq-stats.cpp: In function 'int main(int, char**)': fastq-stats.cpp:183:16: warning: use of an operand of type 'bool' in 'operator++' is deprecated [-Wdeprecated] 183 | case 'D': ++nodup; break; | ^~~~~ fastq-stats.cpp:184:16: warning: use of an operand of type 'bool' in 'operator++' is deprecated [-Wdeprecated] 184 | case 'd': ++debug; break; | ^~~~~ fastq-stats.cpp:187:40: warning: use of an operand of type 'bool' in 'operator++' is deprecated [-Wdeprecated] 187 | case 'x': fastx_outfile = optarg; ++fastx; break; | ^~~~~ fastq-stats.cpp:188:42: warning: use of an operand of type 'bool' in 'operator++' is deprecated [-Wdeprecated] 188 | case 'b': brkdown_outfile = optarg; ++brkdown; break; | ^~~~~~~ fastq-stats.cpp:189:16: warning: use of an operand of type 'bool' in 'operator++' is deprecated [-Wdeprecated] 189 | case 'L': ++len_hist; lenhist_outfile = optarg; break; | ^~~~~~~~ fastq-stats.cpp:190:37: warning: use of an operand of type 'bool' in 'operator++' is deprecated [-Wdeprecated] 190 | case 'g': gc_outfile = optarg; ++gc; break; | ^~ varcall.cpp: In member function 'vfinal& vfinal::operator=(const vfinal&)': varcall.cpp:128:122: warning: no return statement in function returning non-void [-Wreturn-type] 128 | vfinal & operator=(vfinal const&x) {max_idl_seq=x.max_idl_seq; max_idl_cnt=x.max_idl_cnt; padj=x.padj; pcall=x.pcall;} | ^ | return *this; varcall.cpp: In member function 'virtual void VarStatVisitor::Visit(PileupSummary&)': varcall.cpp:1584:19: warning: too many arguments for format [-Wformat-extra-args] 1584 | fprintf(noise_f,"%d\t%c\t%f\t%f\n", p.Depth, pbase, noise, qnoise, mnqual); | ^~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/ea-utils-1.1.2+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/ea-utils-1.1.2+dfsg' dh_auto_install -- PREFIX='${DESTDIR}/usr' make -j16 install DESTDIR=/build/ea-utils-1.1.2\+dfsg/debian/ea-utils AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=\${DESTDIR}/usr make[2]: Entering directory '/build/ea-utils-1.1.2+dfsg' mkdir -p /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin cp fastq-clipper /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-clipper cp fastq-mcf /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-mcf cp fastq-multx /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-multx cp fastq-join /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-join cp fastq-stats /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-stats cp sam-stats /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/sam-stats cp varcall /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/varcall cp fastx-graph /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastx-graph cp determine-phred /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/determine-phred cp randomFQ /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/randomFQ cp alc /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/alc make[2]: Leaving directory '/build/ea-utils-1.1.2+dfsg' mv debian/ea-utils/usr/bin/alc debian/ea-utils/usr/bin/ea-alc make[1]: Leaving directory '/build/ea-utils-1.1.2+dfsg' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package ea-utils: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package ea-utils: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'ea-utils' in '../ea-utils_1.1.2+dfsg-6_amd64.deb'. dpkg-deb: building package 'ea-utils-dbgsym' in '../ea-utils-dbgsym_1.1.2+dfsg-6_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../ea-utils_1.1.2+dfsg-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3159371/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3159371/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3159371 and its subdirectories I: Current time: Sun Feb 26 11:24:40 +14 2023 I: pbuilder-time-stamp: 1677360281