I: pbuilder: network access will be disabled during build I: Current time: Wed Apr 26 14:33:20 -12 2023 I: pbuilder-time-stamp: 1682562800 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [uncalled_2.2+ds1-1.dsc] I: copying [./uncalled_2.2+ds1.orig.tar.xz] I: copying [./uncalled_2.2+ds1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Feb 16 02:54:22 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./uncalled_2.2+ds1-1.dsc: no acceptable signature found dpkg-source: info: extracting uncalled in uncalled-2.2+ds1 dpkg-source: info: unpacking uncalled_2.2+ds1.orig.tar.xz dpkg-source: info: unpacking uncalled_2.2+ds1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian_hdf5 dpkg-source: info: applying debian_bwa dpkg-source: info: applying debian_fast5 dpkg-source: info: applying debian_pybind11 dpkg-source: info: applying fix_debug dpkg-source: info: applying skip_read_until dpkg-source: info: applying debian_pdqsort dpkg-source: info: applying 32bit dpkg-source: info: applying debian_toml11.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/13301/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='308fd7739cc641eab8450a8fc4e72346' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='13301' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.YqfdTtzG/pbuilderrc_TTTq --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.YqfdTtzG/b1 --logfile b1/build.log uncalled_2.2+ds1-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos2-i386 5.10.0-21-686-pae #1 SMP Debian 5.10.162-1 (2023-01-21) i686 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 23 09:24 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 01:20 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 22:20 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 22:20 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 20:38 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 23:43 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 22:20 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 22:20 more -rwsr-xr-x 1 root root 58912 Mar 22 22:20 mount -rwxr-xr-x 1 root root 13856 Mar 22 22:20 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 04:31 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 22:20 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 02:25 tar -rwxr-xr-x 1 root root 13860 Nov 2 04:31 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 20:38 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 22:20 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 22:20 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/13301/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3-all, python3-all-dev, python3-setuptools, python3-pybind11, python3-numpy, pdqsort-dev, dh-python, libbwa-dev, libhdf5-dev, pkg-config, libfast5-dev, libtoml11-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pybind11; however: Package python3-pybind11 is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on pdqsort-dev; however: Package pdqsort-dev is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libbwa-dev; however: Package libbwa-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on libfast5-dev; however: Package libfast5-dev is not installed. pbuilder-satisfydepends-dummy depends on libtoml11-dev; however: Package libtoml11-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbwa-dev{a} libcurl4{a} libcurl4-openssl-dev{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfast5-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libicu72{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libsz2{a} libtoml11-dev{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} pdqsort-dev{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} pybind11-dev{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pkg-resources{a} python3-pybind11{a} python3-setuptools{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libeigen3-dev libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 98 newly installed, 0 to remove and 0 not upgraded. Need to get 54.3 MB of archives. After unpacking 216 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 libpython3.11-minimal i386 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 python3.11-minimal i386 3.11.2-6 [2130 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 python3-minimal i386 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 libpython3.11-stdlib i386 3.11.2-6 [1799 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 python3.11 i386 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 libpython3-stdlib i386 3.11.2-1+b1 [9308 B] Get: 11 http://deb.debian.org/debian bookworm/main i386 python3 i386 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 32 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 34 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 python3-distutils all 3.11.2-2 [131 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 dh-python all 5.20230130 [104 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 hdf5-helpers i386 1.10.8+repack1-1 [27.9 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 libaec0 i386 1.0.6-1+b1 [22.4 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 libsz2 i386 1.0.6-1+b1 [7884 B] Get: 48 http://deb.debian.org/debian bookworm/main i386 libaec-dev i386 1.0.6-1+b1 [21.5 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 libblas3 i386 3.11.0-2 [139 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 libbwa-dev i386 0.7.17-7+b2 [172 kB] Get: 52 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB] Get: 54 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB] Get: 56 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 58 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get: 59 http://deb.debian.org/debian bookworm/main i386 libcurl4 i386 7.88.1-9 [420 kB] Get: 60 http://deb.debian.org/debian bookworm/main i386 libcurl4-openssl-dev i386 7.88.1-9 [534 kB] Get: 61 http://deb.debian.org/debian bookworm/main i386 libexpat1-dev i386 2.5.0-1 [158 kB] Get: 62 http://deb.debian.org/debian bookworm/main i386 libhdf5-103-1 i386 1.10.8+repack1-1 [1175 kB] Get: 63 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB] Get: 64 http://deb.debian.org/debian bookworm/main i386 libhdf5-fortran-102 i386 1.10.8+repack1-1 [101 kB] Get: 65 http://deb.debian.org/debian bookworm/main i386 libhdf5-hl-100 i386 1.10.8+repack1-1 [79.3 kB] Get: 66 http://deb.debian.org/debian bookworm/main i386 libhdf5-hl-fortran-100 i386 1.10.8+repack1-1 [46.2 kB] Get: 67 http://deb.debian.org/debian bookworm/main i386 libhdf5-cpp-103-1 i386 1.10.8+repack1-1 [136 kB] Get: 68 http://deb.debian.org/debian bookworm/main i386 libhdf5-hl-cpp-100 i386 1.10.8+repack1-1 [26.0 kB] Get: 69 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB] Get: 70 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo i386 1:2.1.5-2 [169 kB] Get: 71 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo-dev i386 1:2.1.5-2 [304 kB] Get: 72 http://deb.debian.org/debian bookworm/main i386 libjpeg-dev i386 1:2.1.5-2 [71.8 kB] Get: 73 http://deb.debian.org/debian bookworm/main i386 libssl-dev i386 3.0.8-1 [2487 kB] Get: 74 http://deb.debian.org/debian bookworm/main i386 libhdf5-dev i386 1.10.8+repack1-1 [2754 kB] Get: 75 http://deb.debian.org/debian bookworm/main i386 libfast5-dev all 0.6.5-7 [50.2 kB] Get: 76 http://deb.debian.org/debian bookworm/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 77 http://deb.debian.org/debian bookworm/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 78 http://deb.debian.org/debian bookworm/main i386 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 79 http://deb.debian.org/debian bookworm/main i386 liblapack3 i386 3.11.0-2 [2092 kB] Get: 80 http://deb.debian.org/debian bookworm/main i386 libpkgconf3 i386 1.8.1-1 [38.3 kB] Get: 81 http://deb.debian.org/debian bookworm/main i386 libpython3.11 i386 3.11.2-6 [2013 kB] Get: 82 http://deb.debian.org/debian bookworm/main i386 libpython3.11-dev i386 3.11.2-6 [4906 kB] Get: 83 http://deb.debian.org/debian bookworm/main i386 libpython3-dev i386 3.11.2-1+b1 [9580 B] Get: 84 http://deb.debian.org/debian bookworm/main i386 libpython3-all-dev i386 3.11.2-1+b1 [1068 B] Get: 85 http://deb.debian.org/debian bookworm/main i386 libtoml11-dev all 3.7.1-3 [58.7 kB] Get: 86 http://deb.debian.org/debian bookworm/main i386 pdqsort-dev all 0.0.0+git20180419-2.1 [9988 B] Get: 87 http://deb.debian.org/debian bookworm/main i386 pkgconf-bin i386 1.8.1-1 [29.8 kB] Get: 88 http://deb.debian.org/debian bookworm/main i386 pkgconf i386 1.8.1-1 [25.9 kB] Get: 89 http://deb.debian.org/debian bookworm/main i386 pkg-config i386 1.8.1-1 [13.7 kB] Get: 90 http://deb.debian.org/debian bookworm/main i386 pybind11-dev all 2.10.3-1 [186 kB] Get: 91 http://deb.debian.org/debian bookworm/main i386 python3-all i386 3.11.2-1+b1 [1056 B] Get: 92 http://deb.debian.org/debian bookworm/main i386 python3.11-dev i386 3.11.2-6 [615 kB] Get: 93 http://deb.debian.org/debian bookworm/main i386 python3-dev i386 3.11.2-1+b1 [26.2 kB] Get: 94 http://deb.debian.org/debian bookworm/main i386 python3-all-dev i386 3.11.2-1+b1 [1072 B] Get: 95 http://deb.debian.org/debian bookworm/main i386 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 96 http://deb.debian.org/debian bookworm/main i386 python3-numpy i386 1:1.24.2-1 [6115 kB] Get: 97 http://deb.debian.org/debian bookworm/main i386 python3-pybind11 all 2.10.3-1 [199 kB] Get: 98 http://deb.debian.org/debian bookworm/main i386 python3-setuptools all 66.1.1-1 [521 kB] Fetched 54.3 MB in 3s (20.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.2-6) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.5.0-1_i386.deb ... Unpacking libexpat1:i386 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_i386.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:i386 (3.11.2-6) ... Setting up libexpat1:i386 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19920 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_i386.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:i386. Preparing to unpack .../3-libreadline8_8.2-1.3_i386.deb ... Unpacking libreadline8:i386 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:i386. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_i386.deb ... Unpacking libpython3.11-stdlib:i386 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_i386.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20354 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_i386.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../03-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../06-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... 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Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... 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Preparing to unpack .../39-libbrotli1_1.0.9-2+b6_i386.deb ... Unpacking libbrotli1:i386 (1.0.9-2+b6) ... Selecting previously unselected package libbwa-dev. Preparing to unpack .../40-libbwa-dev_0.7.17-7+b2_i386.deb ... Unpacking libbwa-dev (0.7.17-7+b2) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../41-libsasl2-modules-db_2.1.28+dfsg-10_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../42-libsasl2-2_2.1.28+dfsg-10_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../43-libldap-2.5-0_2.5.13+dfsg-5_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../44-libnghttp2-14_1.52.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.52.0-1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../45-libpsl5_0.21.2-1_i386.deb ... Unpacking libpsl5:i386 (0.21.2-1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../46-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../47-libssh2-1_1.10.0-3+b1_i386.deb ... Unpacking libssh2-1:i386 (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:i386. Preparing to unpack .../48-libcurl4_7.88.1-9_i386.deb ... Unpacking libcurl4:i386 (7.88.1-9) ... Selecting previously unselected package libcurl4-openssl-dev:i386. Preparing to unpack .../49-libcurl4-openssl-dev_7.88.1-9_i386.deb ... Unpacking libcurl4-openssl-dev:i386 (7.88.1-9) ... Selecting previously unselected package libexpat1-dev:i386. Preparing to unpack .../50-libexpat1-dev_2.5.0-1_i386.deb ... Unpacking libexpat1-dev:i386 (2.5.0-1) ... Selecting previously unselected package libhdf5-103-1:i386. Preparing to unpack .../51-libhdf5-103-1_1.10.8+repack1-1_i386.deb ... Unpacking libhdf5-103-1:i386 (1.10.8+repack1-1) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../52-libgfortran5_12.2.0-14_i386.deb ... Unpacking libgfortran5:i386 (12.2.0-14) ... Selecting previously unselected package libhdf5-fortran-102:i386. Preparing to unpack .../53-libhdf5-fortran-102_1.10.8+repack1-1_i386.deb ... Unpacking libhdf5-fortran-102:i386 (1.10.8+repack1-1) ... Selecting previously unselected package libhdf5-hl-100:i386. Preparing to unpack .../54-libhdf5-hl-100_1.10.8+repack1-1_i386.deb ... Unpacking libhdf5-hl-100:i386 (1.10.8+repack1-1) ... Selecting previously unselected package libhdf5-hl-fortran-100:i386. Preparing to unpack .../55-libhdf5-hl-fortran-100_1.10.8+repack1-1_i386.deb ... Unpacking libhdf5-hl-fortran-100:i386 (1.10.8+repack1-1) ... Selecting previously unselected package libhdf5-cpp-103-1:i386. Preparing to unpack .../56-libhdf5-cpp-103-1_1.10.8+repack1-1_i386.deb ... Unpacking libhdf5-cpp-103-1:i386 (1.10.8+repack1-1) ... Selecting previously unselected package libhdf5-hl-cpp-100:i386. Preparing to unpack .../57-libhdf5-hl-cpp-100_1.10.8+repack1-1_i386.deb ... Unpacking libhdf5-hl-cpp-100:i386 (1.10.8+repack1-1) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../58-zlib1g-dev_1%3a1.2.13.dfsg-1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.13.dfsg-1) ... Selecting previously unselected package libjpeg62-turbo:i386. Preparing to unpack .../59-libjpeg62-turbo_1%3a2.1.5-2_i386.deb ... Unpacking libjpeg62-turbo:i386 (1:2.1.5-2) ... Selecting previously unselected package libjpeg62-turbo-dev:i386. Preparing to unpack .../60-libjpeg62-turbo-dev_1%3a2.1.5-2_i386.deb ... Unpacking libjpeg62-turbo-dev:i386 (1:2.1.5-2) ... Selecting previously unselected package libjpeg-dev:i386. Preparing to unpack .../61-libjpeg-dev_1%3a2.1.5-2_i386.deb ... Unpacking libjpeg-dev:i386 (1:2.1.5-2) ... Selecting previously unselected package libssl-dev:i386. Preparing to unpack .../62-libssl-dev_3.0.8-1_i386.deb ... Unpacking libssl-dev:i386 (3.0.8-1) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../63-libhdf5-dev_1.10.8+repack1-1_i386.deb ... Unpacking libhdf5-dev (1.10.8+repack1-1) ... Selecting previously unselected package libfast5-dev. Preparing to unpack .../64-libfast5-dev_0.6.5-7_all.deb ... Unpacking libfast5-dev (0.6.5-7) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../65-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../66-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../67-libjs-sphinxdoc_5.3.0-4_all.deb ... Unpacking libjs-sphinxdoc (5.3.0-4) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../68-liblapack3_3.11.0-2_i386.deb ... Unpacking liblapack3:i386 (3.11.0-2) ... Selecting previously unselected package libpkgconf3:i386. Preparing to unpack .../69-libpkgconf3_1.8.1-1_i386.deb ... Unpacking libpkgconf3:i386 (1.8.1-1) ... Selecting previously unselected package libpython3.11:i386. Preparing to unpack .../70-libpython3.11_3.11.2-6_i386.deb ... Unpacking libpython3.11:i386 (3.11.2-6) ... Selecting previously unselected package libpython3.11-dev:i386. Preparing to unpack .../71-libpython3.11-dev_3.11.2-6_i386.deb ... Unpacking libpython3.11-dev:i386 (3.11.2-6) ... Selecting previously unselected package libpython3-dev:i386. Preparing to unpack .../72-libpython3-dev_3.11.2-1+b1_i386.deb ... Unpacking libpython3-dev:i386 (3.11.2-1+b1) ... Selecting previously unselected package libpython3-all-dev:i386. Preparing to unpack .../73-libpython3-all-dev_3.11.2-1+b1_i386.deb ... Unpacking libpython3-all-dev:i386 (3.11.2-1+b1) ... Selecting previously unselected package libtoml11-dev. Preparing to unpack .../74-libtoml11-dev_3.7.1-3_all.deb ... Unpacking libtoml11-dev (3.7.1-3) ... Selecting previously unselected package pdqsort-dev. Preparing to unpack .../75-pdqsort-dev_0.0.0+git20180419-2.1_all.deb ... Unpacking pdqsort-dev (0.0.0+git20180419-2.1) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../76-pkgconf-bin_1.8.1-1_i386.deb ... Unpacking pkgconf-bin (1.8.1-1) ... Selecting previously unselected package pkgconf:i386. Preparing to unpack .../77-pkgconf_1.8.1-1_i386.deb ... Unpacking pkgconf:i386 (1.8.1-1) ... Selecting previously unselected package pkg-config:i386. Preparing to unpack .../78-pkg-config_1.8.1-1_i386.deb ... Unpacking pkg-config:i386 (1.8.1-1) ... Selecting previously unselected package pybind11-dev. Preparing to unpack .../79-pybind11-dev_2.10.3-1_all.deb ... Unpacking pybind11-dev (2.10.3-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../80-python3-all_3.11.2-1+b1_i386.deb ... Unpacking python3-all (3.11.2-1+b1) ... Selecting previously unselected package python3.11-dev. Preparing to unpack .../81-python3.11-dev_3.11.2-6_i386.deb ... Unpacking python3.11-dev (3.11.2-6) ... Selecting previously unselected package python3-dev. Preparing to unpack .../82-python3-dev_3.11.2-1+b1_i386.deb ... Unpacking python3-dev (3.11.2-1+b1) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../83-python3-all-dev_3.11.2-1+b1_i386.deb ... Unpacking python3-all-dev (3.11.2-1+b1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../84-python3-pkg-resources_66.1.1-1_all.deb ... Unpacking python3-pkg-resources (66.1.1-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../85-python3-numpy_1%3a1.24.2-1_i386.deb ... Unpacking python3-numpy (1:1.24.2-1) ... Selecting previously unselected package python3-pybind11. Preparing to unpack .../86-python3-pybind11_2.10.3-1_all.deb ... Unpacking python3-pybind11 (2.10.3-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../87-python3-setuptools_66.1.1-1_all.deb ... Unpacking python3-setuptools (66.1.1-1) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:i386 (1.5.7-1) ... Setting up libpsl5:i386 (0.21.2-1) ... Setting up libicu72:i386 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up hdf5-helpers (1.10.8+repack1-1) ... Setting up libtoml11-dev (3.7.1-3) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:i386 (1.0.9-2+b6) ... Setting up libnghttp2-14:i386 (1.52.0-1) ... Setting up libmagic1:i386 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up pybind11-dev (2.10.3-1) ... Setting up libaec0:i386 (1.0.6-1+b1) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg-10) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libpkgconf3:i386 (1.8.1-1) ... Setting up libexpat1-dev:i386 (2.5.0-1) ... Setting up libjpeg62-turbo:i386 (1:2.1.5-2) ... Setting up libjpeg62-turbo-dev:i386 (1:2.1.5-2) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up pdqsort-dev (0.0.0+git20180419-2.1) ... Setting up libssl-dev:i386 (3.0.8-1) ... Setting up autopoint (0.21-12) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up libsasl2-2:i386 (2.1.28+dfsg-10) ... Setting up libgfortran5:i386 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libbwa-dev (0.7.17-7+b2) ... Setting up zlib1g-dev:i386 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:i386 (1.10.0-3+b1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libelf1:i386 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:i386 (2.9.14+dfsg-1.2) ... Setting up libsz2:i386 (1.0.6-1+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblapack3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libreadline8:i386 (8.2-1.3) ... Setting up libaec-dev:i386 (1.0.6-1+b1) ... Setting up libjpeg-dev:i386 (1:2.1.5-2) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Setting up pkgconf:i386 (1.8.1-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up pkg-config:i386 (1.8.1-1) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libcurl4:i386 (7.88.1-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:i386 (3.11.2-6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcurl4-openssl-dev:i386 (7.88.1-9) ... Setting up libhdf5-103-1:i386 (1.10.8+repack1-1) ... Setting up libhdf5-cpp-103-1:i386 (1.10.8+repack1-1) ... Setting up libpython3-stdlib:i386 (3.11.2-1+b1) ... Setting up libhdf5-hl-100:i386 (1.10.8+repack1-1) ... Setting up python3.11 (3.11.2-6) ... Setting up libpython3.11:i386 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up libhdf5-hl-cpp-100:i386 (1.10.8+repack1-1) ... Setting up libpython3.11-dev:i386 (3.11.2-6) ... Setting up libhdf5-fortran-102:i386 (1.10.8+repack1-1) ... Setting up libhdf5-hl-fortran-100:i386 (1.10.8+repack1-1) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up python3-pybind11 (2.10.3-1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-2) ... Setting up dh-python (5.20230130) ... Setting up libpython3-dev:i386 (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3.11-dev (3.11.2-6) ... Setting up python3-all (3.11.2-1+b1) ... Setting up libpython3-all-dev:i386 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up libhdf5-dev (1.10.8+repack1-1) ... update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up libfast5-dev (0.6.5-7) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/uncalled-2.2+ds1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../uncalled_2.2+ds1-1_source.changes dpkg-buildpackage: info: source package uncalled dpkg-buildpackage: info: source version 2.2+ds1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/uncalled-2.2+ds1' if dpkg -s python3-pybind11 >/dev/null 2>/dev/null ; then \ dh_auto_clean ; \ else \ echo "skip dh_auto_clean since python3-pybind11 is not installed on your local machine" ; \ fi I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it make[1]: Leaving directory '/build/uncalled-2.2+ds1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled copying uncalled/minknow_client.py -> /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled copying uncalled/index.py -> /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled copying uncalled/debug.py -> /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled copying uncalled/pafstats.py -> /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled copying uncalled/args.py -> /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled copying uncalled/__init__.py -> /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled copying uncalled/sim_utils.py -> /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled running egg_info creating uncalled.egg-info writing uncalled.egg-info/PKG-INFO writing dependency_links to uncalled.egg-info/dependency_links.txt writing top-level names to uncalled.egg-info/top_level.txt writing manifest file 'uncalled.egg-info/SOURCES.txt' reading manifest file 'uncalled.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENCE' writing manifest file 'uncalled.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'uncalled.conf' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'uncalled.conf' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'uncalled.conf' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'uncalled.conf' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) creating /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled/conf copying uncalled/conf/defaults.toml -> /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled/conf copying uncalled/conf/r94_5mers.txt -> /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled/conf copying uncalled/conf/r94_5mers_threshs.txt -> /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled/conf running build_ext All submodules present Found libbwa.a Found libhdf5.a building '_uncalled' extension creating build creating build/temp.linux-i386-cpython-311 creating build/temp.linux-i386-cpython-311/src i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/uncalled-2.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/chunk.cpp -o build/temp.linux-i386-cpython-311/src/chunk.o -std=c++11 -O3 i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/uncalled-2.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/client_sim.cpp -o build/temp.linux-i386-cpython-311/src/client_sim.o -std=c++11 -O3 i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/uncalled-2.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/event_detector.cpp -o build/temp.linux-i386-cpython-311/src/event_detector.o -std=c++11 -O3 i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/uncalled-2.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/event_profiler.cpp -o build/temp.linux-i386-cpython-311/src/event_profiler.o -std=c++11 -O3 i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/uncalled-2.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/fast5_reader.cpp -o build/temp.linux-i386-cpython-311/src/fast5_reader.o -std=c++11 -O3 i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/uncalled-2.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/map_pool.cpp -o build/temp.linux-i386-cpython-311/src/map_pool.o -std=c++11 -O3 i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/uncalled-2.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/mapper.cpp -o build/temp.linux-i386-cpython-311/src/mapper.o -std=c++11 -O3 src/mapper.cpp: In member function ‘void Mapper::update_seeds(PathBuffer&, bool)’: src/mapper.cpp:673:13: warning: unused variable ‘sa_start’ [-Wunused-variable] 673 | u64 sa_start = sa_end - ref_len + 1; | ^~~~~~~~ src/mapper.cpp:676:14: warning: variable ‘clust’ set but not used [-Wunused-but-set-variable] 676 | auto clust = seed_tracker_.add_seed( | ^~~~~ src/mapper.cpp: In copy constructor ‘Mapper::PathBuffer::PathBuffer(const Mapper::PathBuffer&)’: src/mapper.cpp:736:16: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘class Mapper::PathBuffer’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 736 | std::memcpy(this, &p, sizeof(PathBuffer)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/mapper.cpp:26: src/mapper.hpp:139:11: note: ‘class Mapper::PathBuffer’ declared here 139 | class PathBuffer { | ^~~~~~~~~~ i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/uncalled-2.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/normalizer.cpp -o build/temp.linux-i386-cpython-311/src/normalizer.o -std=c++11 -O3 i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/uncalled-2.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/pybinder.cpp -o build/temp.linux-i386-cpython-311/src/pybinder.o -std=c++11 -O3 i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/uncalled-2.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/range.cpp -o build/temp.linux-i386-cpython-311/src/range.o -std=c++11 -O3 i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/uncalled-2.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/read_buffer.cpp -o build/temp.linux-i386-cpython-311/src/read_buffer.o -std=c++11 -O3 i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/uncalled-2.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/realtime_pool.cpp -o build/temp.linux-i386-cpython-311/src/realtime_pool.o -std=c++11 -O3 i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/uncalled-2.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/seed_tracker.cpp -o build/temp.linux-i386-cpython-311/src/seed_tracker.o -std=c++11 -O3 i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/uncalled-2.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/self_align_ref.cpp -o build/temp.linux-i386-cpython-311/src/self_align_ref.o -std=c++11 -O3 i686-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/uncalled-2.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-cpython-311/src/chunk.o build/temp.linux-i386-cpython-311/src/client_sim.o build/temp.linux-i386-cpython-311/src/event_detector.o build/temp.linux-i386-cpython-311/src/event_profiler.o build/temp.linux-i386-cpython-311/src/fast5_reader.o build/temp.linux-i386-cpython-311/src/map_pool.o build/temp.linux-i386-cpython-311/src/mapper.o build/temp.linux-i386-cpython-311/src/normalizer.o build/temp.linux-i386-cpython-311/src/pybinder.o build/temp.linux-i386-cpython-311/src/range.o build/temp.linux-i386-cpython-311/src/read_buffer.o build/temp.linux-i386-cpython-311/src/realtime_pool.o build/temp.linux-i386-cpython-311/src/seed_tracker.o build/temp.linux-i386-cpython-311/src/self_align_ref.o -L./submods/bwa -L/usr/lib/i386-linux-gnu/hdf5/serial -L/usr/lib/i386-linux-gnu -lbwa -lhdf5 -lz -ldl -lm -o /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/_uncalled.cpython-311-i386-linux-gnu.so running build_scripts creating build/scripts-3.11 copying and adjusting scripts/uncalled -> build/scripts-3.11 changing mode of build/scripts-3.11/uncalled from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:240: cd /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build; python3.11 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/uncalled/ -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/uncalled-2.2+ds1/debian/uncalled running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing uncalled.egg-info/PKG-INFO writing dependency_links to uncalled.egg-info/dependency_links.txt writing top-level names to uncalled.egg-info/top_level.txt reading manifest file 'uncalled.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENCE' writing manifest file 'uncalled.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'uncalled.conf' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'uncalled.conf' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'uncalled.conf' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'uncalled.conf' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) running build_ext All submodules present Found libbwa.a Found libhdf5.a running build_scripts running install_lib creating /build/uncalled-2.2+ds1/debian/uncalled/usr creating /build/uncalled-2.2+ds1/debian/uncalled/usr/lib creating /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11 creating /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages copying /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/_uncalled.cpython-311-i386-linux-gnu.so -> /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages creating /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled copying /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled/minknow_client.py -> /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled copying /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled/index.py -> /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled creating /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/__pycache__ copying /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled/__pycache__/pafstats.cpython-311.pyc -> /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/__pycache__ copying /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled/__pycache__/debug.cpython-311.pyc -> /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/__pycache__ copying /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled/__pycache__/args.cpython-311.pyc -> /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/__pycache__ copying /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled/__pycache__/index.cpython-311.pyc -> /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/__pycache__ copying /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled/__pycache__/__init__.cpython-311.pyc -> /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/__pycache__ copying /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled/__pycache__/sim_utils.cpython-311.pyc -> /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/__pycache__ copying /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled/debug.py -> /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled copying /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled/pafstats.py -> /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled copying /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled/args.py -> /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled creating /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/conf copying /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled/conf/r94_5mers_threshs.txt -> /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/conf copying /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled/conf/r94_5mers.txt -> /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/conf copying /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled/conf/defaults.toml -> /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/conf copying /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled/__init__.py -> /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled copying /build/uncalled-2.2+ds1/.pybuild/cpython3_3.11_uncalled/build/uncalled/sim_utils.py -> /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled byte-compiling /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/minknow_client.py to minknow_client.cpython-311.pyc byte-compiling /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/index.py to index.cpython-311.pyc byte-compiling /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/debug.py to debug.cpython-311.pyc byte-compiling /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/pafstats.py to pafstats.cpython-311.pyc byte-compiling /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/args.py to args.cpython-311.pyc byte-compiling /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/__init__.py to __init__.cpython-311.pyc byte-compiling /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/sim_utils.py to sim_utils.cpython-311.pyc running install_egg_info Copying uncalled.egg-info to /build/uncalled-2.2+ds1/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled-2.2.egg-info Skipping SOURCES.txt running install_scripts creating /build/uncalled-2.2+ds1/debian/uncalled/usr/bin copying build/scripts-3.11/uncalled -> /build/uncalled-2.2+ds1/debian/uncalled/usr/bin changing mode of /build/uncalled-2.2+ds1/debian/uncalled/usr/bin/uncalled to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'uncalled' in '../uncalled_2.2+ds1-1_i386.deb'. dpkg-deb: building package 'uncalled-dbgsym' in '../uncalled-dbgsym_2.2+ds1-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../uncalled_2.2+ds1-1_i386.buildinfo dpkg-genchanges --build=binary -O../uncalled_2.2+ds1-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/13301 and its subdirectories I: Current time: Wed Apr 26 14:45:55 -12 2023 I: pbuilder-time-stamp: 1682563555