W: cgroups are not available on the host, not using them. unshare: unshare failed: Cannot allocate memory W: pbuilder: unshare CLONE_NEWNET not available I: pbuilder: network access is available during build! I: Current time: Thu May 11 03:54:14 +14 2023 I: pbuilder-time-stamp: 1683726854 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-pybedtools_0.9.0-4.dsc] I: copying [./python-pybedtools_0.9.0.orig.tar.gz] I: copying [./python-pybedtools_0.9.0-4.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Jan 3 11:28:23 2023 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-pybedtools_0.9.0-4.dsc: no acceptable signature found dpkg-source: info: extracting python-pybedtools in python-pybedtools-0.9.0 dpkg-source: info: unpacking python-pybedtools_0.9.0.orig.tar.gz dpkg-source: info: unpacking python-pybedtools_0.9.0-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying define_filenotfounderror_python2.patch dpkg-source: info: applying remove_badges_from_documentation.patch dpkg-source: info: applying add_missing_shebang.patch dpkg-source: info: applying yaml_safe_load.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/22264/tmp/hooks/D01_modify_environment starting debug: Running on ionos2-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 May 11 03:54 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/22264/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/22264/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.15(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=7' DIRSTACK=() DISTRIBUTION=bookworm EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=22264 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.edlZPnBW/pbuilderrc_aQxB --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.edlZPnBW/b2 --logfile b2/build.log --extrapackages usrmerge python-pybedtools_0.9.0-4.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 5.10.0-22-686-pae #1 SMP Debian 5.10.178-3 (2023-04-22) i686 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 24 11:24 bash -rwxr-xr-x 3 root root 38404 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 21 2022 cat -rwxr-xr-x 1 root root 79816 Sep 21 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 21 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 21 2022 chown -rwxr-xr-x 1 root root 162024 Sep 21 2022 cp -rwxr-xr-x 1 root root 136916 Jan 6 03:20 dash -rwxr-xr-x 1 root root 137160 Sep 21 2022 date -rwxr-xr-x 1 root root 100364 Sep 21 2022 dd -rwxr-xr-x 1 root root 108940 Sep 21 2022 df -rwxr-xr-x 1 root root 162152 Sep 21 2022 dir -rwxr-xr-x 1 root root 87760 Mar 24 00:20 dmesg lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 21 2022 echo -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep -rwxr-xr-x 1 root root 34664 Sep 21 2022 false -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep -rwxr-xr-x 1 root root 84272 Mar 24 00:20 findmnt -rwsr-xr-x 1 root root 30240 Mar 23 22:38 fusermount -rwxr-xr-x 1 root root 218680 Jan 25 04:43 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 20 03:33 hostname -rwxr-xr-x 1 root root 75756 Sep 21 2022 ln -rwxr-xr-x 1 root root 55600 Mar 24 01:43 login -rwxr-xr-x 1 root root 162152 Sep 21 2022 ls -rwxr-xr-x 1 root root 214568 Mar 24 00:20 lsblk -rwxr-xr-x 1 root root 96328 Sep 21 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 21 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 21 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 24 00:20 more -rwsr-xr-x 1 root root 58912 Mar 24 00:20 mount -rwxr-xr-x 1 root root 13856 Mar 24 00:20 mountpoint -rwxr-xr-x 1 root root 157932 Sep 21 2022 mv lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 21 2022 pwd lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 21 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 21 2022 rm -rwxr-xr-x 1 root root 51080 Sep 21 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 3 2022 run-parts -rwxr-xr-x 1 root root 133224 Jan 6 09:55 sed lrwxrwxrwx 1 root root 9 May 11 03:54 sh -> /bin/bash -rwxr-xr-x 1 root root 38760 Sep 21 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 21 2022 stty -rwsr-xr-x 1 root root 83492 Mar 24 00:20 su -rwxr-xr-x 1 root root 38792 Sep 21 2022 sync -rwxr-xr-x 1 root root 598456 Apr 7 04:25 tar -rwxr-xr-x 1 root root 13860 Nov 3 2022 tempfile -rwxr-xr-x 1 root root 120776 Sep 21 2022 touch -rwxr-xr-x 1 root root 34664 Sep 21 2022 true -rwxr-xr-x 1 root root 17892 Mar 23 22:38 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 24 00:20 umount -rwxr-xr-x 1 root root 38760 Sep 21 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 21 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 24 00:20 wdctl lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/22264/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, bedtools, cython3, python3-all-dev, python3-setuptools, python3-pysam, python3-matplotlib, python3-pytest, python3-numpy, python3-numpydoc, python3-pandas, python3-psutil, python3-yaml, python3-tk, python3-sphinx, r-base-core, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-numpydoc; however: Package python3-numpydoc is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-psutil; however: Package python3-psutil is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-tk; however: Package python3-tk is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on r-base-core; however: Package r-base-core is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcurl3-gnutls{a} libcurl4{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhts3{a} libhtscodecs2{a} libice6{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libopenjp2-7{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsm6{a} libssh2-1{a} libsub-override-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxsimd-dev{a} libxslt1.1{a} libxss1{a} libxt6{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} openssl{a} po-debconf{a} python-babel-localedata{a} python-matplotlib-data{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-babel{a} python3-beniget{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-docutils{a} python3-fonttools{a} python3-fs{a} python3-gast{a} python3-idna{a} python3-imagesize{a} python3-iniconfig{a} python3-jinja2{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-numpydoc{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-ply{a} python3-psutil{a} python3-py{a} python3-pygments{a} python3-pyparsing{a} python3-pysam{a} python3-pytest{a} python3-pythran{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sympy{a} python3-tk{a} python3-tz{a} python3-ufolib2{a} python3-urllib3{a} python3-yaml{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} r-base-core{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tk8.6-blt2.5{a} ucf{a} unicode-data{a} unzip{a} x11-common{a} xdg-utils{a} xml-core{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl lynx publicsuffix python3-bottleneck python3-bs4 python3-html5lib python3-numexpr python3-odf python3-olefile python3-openpyxl python3-tables r-base-dev r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 212 newly installed, 0 to remove and 0 not upgraded. Need to get 171 MB of archives. After unpacking 770 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 libpython3.11-minimal i386 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 python3.11-minimal i386 3.11.2-6 [2130 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 python3-minimal i386 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 libpython3.11-stdlib i386 3.11.2-6 [1799 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 python3.11 i386 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 libpython3-stdlib i386 3.11.2-1+b1 [9308 B] Get: 11 http://deb.debian.org/debian bookworm/main i386 python3 i386 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 sgml-base all 1.31 [15.4 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 openssl i386 3.0.8-1 [1412 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 ca-certificates all 20230311 [153 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 ucf all 3.0043+nmu1 [55.2 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 bedtools i386 2.30.0+dfsg-3 [734 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 libtcl8.6 i386 8.6.13+dfsg-2 [1095 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 34 http://deb.debian.org/debian bookworm/main i386 libpng16-16 i386 1.6.39-2 [283 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 libfreetype6 i386 2.12.1+dfsg-5 [410 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 fontconfig-config i386 2.14.1-4 [315 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 libfontconfig1 i386 2.14.1-4 [398 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 libbsd0 i386 0.11.7-2 [121 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 libx11-data all 2:1.8.4-2 [292 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 libx11-6 i386 2:1.8.4-2 [782 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 libxrender1 i386 1:0.9.10-1.1 [34.1 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 libxft2 i386 2.3.6-1 [62.8 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 x11-common all 1:7.7+23 [252 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 libxss1 i386 1:1.2.3-1 [18.1 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 libtk8.6 i386 8.6.13-2 [824 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 tk8.6-blt2.5 i386 2.5.3+dfsg-4.1 [622 kB] Get: 52 http://deb.debian.org/debian bookworm/main i386 blt i386 2.5.3+dfsg-4.1 [14.9 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 cython3 i386 0.29.32-2+b1 [1297 kB] Get: 54 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 56 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 58 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 59 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 60 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 61 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 62 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 63 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 64 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB] Get: 65 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 66 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 67 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 68 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 69 http://deb.debian.org/debian bookworm/main i386 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 70 http://deb.debian.org/debian bookworm/main i386 python3-distutils all 3.11.2-3 [131 kB] Get: 71 http://deb.debian.org/debian bookworm/main i386 dh-python all 5.20230130 [104 kB] Get: 72 http://deb.debian.org/debian bookworm/main i386 xml-core all 0.18+nmu1 [23.8 kB] Get: 73 http://deb.debian.org/debian bookworm/main i386 docutils-common all 0.19+dfsg-6 [127 kB] Get: 74 http://deb.debian.org/debian bookworm/main i386 fontconfig i386 2.14.1-4 [450 kB] Get: 75 http://deb.debian.org/debian bookworm/main i386 fonts-lyx all 2.3.7-1 [186 kB] Get: 76 http://deb.debian.org/debian bookworm/main i386 libblas3 i386 3.11.0-2 [139 kB] Get: 77 http://deb.debian.org/debian bookworm/main i386 libboost1.74-dev i386 1.74.0+ds1-20 [9510 kB] Get: 78 http://deb.debian.org/debian bookworm/main i386 libboost-dev i386 1.74.0.3 [4548 B] Get: 79 http://deb.debian.org/debian bookworm/main i386 libpixman-1-0 i386 0.42.2-1 [548 kB] Get: 80 http://deb.debian.org/debian bookworm/main i386 libxcb-render0 i386 1.15-1 [116 kB] Get: 81 http://deb.debian.org/debian bookworm/main i386 libxcb-shm0 i386 1.15-1 [106 kB] Get: 82 http://deb.debian.org/debian bookworm/main i386 libcairo2 i386 1.16.0-7 [627 kB] Get: 83 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB] Get: 84 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB] Get: 85 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get: 86 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB] Get: 87 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get: 88 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 89 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get: 90 http://deb.debian.org/debian bookworm/main i386 libcurl3-gnutls i386 7.88.1-9 [412 kB] Get: 91 http://deb.debian.org/debian bookworm/main i386 libcurl4 i386 7.88.1-9 [420 kB] Get: 92 http://deb.debian.org/debian bookworm/main i386 libdatrie1 i386 0.2.13-2+b1 [45.0 kB] Get: 93 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB] Get: 94 http://deb.debian.org/debian bookworm/main i386 libexpat1-dev i386 2.5.0-1 [158 kB] Get: 95 http://deb.debian.org/debian bookworm/main i386 libfribidi0 i386 1.0.8-2.1 [65.6 kB] Get: 96 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB] Get: 97 http://deb.debian.org/debian bookworm/main i386 libglib2.0-0 i386 2.74.6-2 [1467 kB] Get: 98 http://deb.debian.org/debian bookworm/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB] Get: 99 http://deb.debian.org/debian bookworm/main i386 libharfbuzz0b i386 6.0.0+dfsg-3 [1966 kB] Get: 100 http://deb.debian.org/debian bookworm/main i386 libhtscodecs2 i386 1.3.0-4 [67.4 kB] Get: 101 http://deb.debian.org/debian bookworm/main i386 libhts3 i386 1.16+ds-3 [469 kB] Get: 102 http://deb.debian.org/debian bookworm/main i386 libice6 i386 2:1.0.10-1 [60.8 kB] Get: 103 http://deb.debian.org/debian bookworm/main i386 libimagequant0 i386 2.17.0-1 [32.9 kB] Get: 104 http://deb.debian.org/debian bookworm/main i386 libjbig0 i386 2.1-6.1 [31.6 kB] Get: 105 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo i386 1:2.1.5-2 [169 kB] Get: 106 http://deb.debian.org/debian bookworm/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 107 http://deb.debian.org/debian bookworm/main i386 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 108 http://deb.debian.org/debian bookworm/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 109 http://deb.debian.org/debian bookworm/main i386 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 110 http://deb.debian.org/debian bookworm/main i386 libjson-perl all 4.10000-1 [87.5 kB] Get: 111 http://deb.debian.org/debian bookworm/main i386 libopenblas0-pthread i386 0.3.21+ds-4 [5148 kB] Get: 112 http://deb.debian.org/debian bookworm/main i386 liblapack3 i386 3.11.0-2 [2092 kB] Get: 113 http://deb.debian.org/debian bookworm/main i386 liblbfgsb0 i386 3.0+dfsg.4-1 [28.5 kB] Get: 114 http://deb.debian.org/debian bookworm/main i386 liblcms2-2 i386 2.14-2 [165 kB] Get: 115 http://deb.debian.org/debian bookworm/main i386 liblerc4 i386 4.0.0+ds-2 [181 kB] Get: 116 http://deb.debian.org/debian bookworm/main i386 libopenblas0 i386 0.3.21+ds-4 [32.6 kB] Get: 117 http://deb.debian.org/debian bookworm/main i386 libopenblas-pthread-dev i386 0.3.21+ds-4 [3447 kB] Get: 118 http://deb.debian.org/debian bookworm/main i386 libopenblas-dev i386 0.3.21+ds-4 [44.9 kB] Get: 119 http://deb.debian.org/debian bookworm/main i386 libopenjp2-7 i386 2.5.0-1+b1 [196 kB] Get: 120 http://deb.debian.org/debian bookworm/main i386 libthai-data all 0.1.29-1 [176 kB] Get: 121 http://deb.debian.org/debian bookworm/main i386 libthai0 i386 0.1.29-1 [58.6 kB] Get: 122 http://deb.debian.org/debian bookworm/main i386 libpango-1.0-0 i386 1.50.12+ds-1 [220 kB] Get: 123 http://deb.debian.org/debian bookworm/main i386 libpangoft2-1.0-0 i386 1.50.12+ds-1 [50.5 kB] Get: 124 http://deb.debian.org/debian bookworm/main i386 libpangocairo-1.0-0 i386 1.50.12+ds-1 [35.4 kB] Get: 125 http://deb.debian.org/debian bookworm/main i386 libpaper1 i386 1.1.29 [12.7 kB] Get: 126 http://deb.debian.org/debian bookworm/main i386 libpaper-utils i386 1.1.29 [8972 B] Get: 127 http://deb.debian.org/debian bookworm/main i386 libpython3.11 i386 3.11.2-6 [2013 kB] Get: 128 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB] Get: 129 http://deb.debian.org/debian bookworm/main i386 libpython3.11-dev i386 3.11.2-6 [4906 kB] Get: 130 http://deb.debian.org/debian bookworm/main i386 libpython3-dev i386 3.11.2-1+b1 [9580 B] Get: 131 http://deb.debian.org/debian bookworm/main i386 libpython3-all-dev i386 3.11.2-1+b1 [1068 B] Get: 132 http://deb.debian.org/debian bookworm/main i386 libqhull-r8.0 i386 2020.2-5 [260 kB] Get: 133 http://deb.debian.org/debian bookworm/main i386 libraqm0 i386 0.7.0-4.1 [11.1 kB] Get: 134 http://deb.debian.org/debian bookworm/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 135 http://deb.debian.org/debian bookworm/main i386 libwebp7 i386 1.2.4-0.1 [293 kB] Get: 136 http://deb.debian.org/debian bookworm/main i386 libtiff6 i386 4.5.0-5 [332 kB] Get: 137 http://deb.debian.org/debian bookworm/main i386 libwebpdemux2 i386 1.2.4-0.1 [99.7 kB] Get: 138 http://deb.debian.org/debian bookworm/main i386 libwebpmux3 i386 1.2.4-0.1 [111 kB] Get: 139 http://deb.debian.org/debian bookworm/main i386 libxsimd-dev i386 8.1.0-7 [88.8 kB] Get: 140 http://deb.debian.org/debian bookworm/main i386 libxslt1.1 i386 1.1.35-1 [253 kB] Get: 141 http://deb.debian.org/debian bookworm/main i386 libxt6 i386 1:1.2.1-1.1 [192 kB] Get: 142 http://deb.debian.org/debian bookworm/main i386 libyaml-0-2 i386 0.2.5-1 [55.9 kB] Get: 143 http://deb.debian.org/debian bookworm/main i386 python-babel-localedata all 2.10.3-1 [5615 kB] Get: 144 http://deb.debian.org/debian bookworm/main i386 python-matplotlib-data all 3.6.3-1 [2744 kB] Get: 145 http://deb.debian.org/debian bookworm/main i386 python3-alabaster all 0.7.12-1 [20.8 kB] Get: 146 http://deb.debian.org/debian bookworm/main i386 python3-all i386 3.11.2-1+b1 [1056 B] Get: 147 http://deb.debian.org/debian bookworm/main i386 python3.11-dev i386 3.11.2-6 [615 kB] Get: 148 http://deb.debian.org/debian bookworm/main i386 python3-dev i386 3.11.2-1+b1 [26.2 kB] Get: 149 http://deb.debian.org/debian bookworm/main i386 python3-all-dev i386 3.11.2-1+b1 [1072 B] Get: 150 http://deb.debian.org/debian bookworm/main i386 python3-appdirs all 1.4.4-3 [13.0 kB] Get: 151 http://deb.debian.org/debian bookworm/main i386 python3-attr all 22.2.0-1 [65.4 kB] Get: 152 http://deb.debian.org/debian bookworm/main i386 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 153 http://deb.debian.org/debian bookworm/main i386 python3-tz all 2022.7.1-3 [30.1 kB] Get: 154 http://deb.debian.org/debian bookworm/main i386 python3-babel all 2.10.3-1 [103 kB] Get: 155 http://deb.debian.org/debian bookworm/main i386 python3-gast all 0.5.2-2 [9364 B] Get: 156 http://deb.debian.org/debian bookworm/main i386 python3-beniget all 0.4.1-3 [9920 B] Get: 157 http://deb.debian.org/debian bookworm/main i386 python3-brotli i386 1.0.9-2+b6 [295 kB] Get: 158 http://deb.debian.org/debian bookworm/main i386 python3-certifi all 2022.9.24-1 [153 kB] Get: 159 http://deb.debian.org/debian bookworm/main i386 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get: 160 http://deb.debian.org/debian bookworm/main i386 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get: 161 http://deb.debian.org/debian bookworm/main i386 python3-numpy i386 1:1.24.2-1 [6115 kB] Get: 162 http://deb.debian.org/debian bookworm/main i386 python3-contourpy i386 1.0.7-1+b1 [184 kB] Get: 163 http://deb.debian.org/debian bookworm/main i386 python3-cycler all 0.11.0-1 [8020 B] Get: 164 http://deb.debian.org/debian bookworm/main i386 python3-six all 1.16.0-4 [17.5 kB] Get: 165 http://deb.debian.org/debian bookworm/main i386 python3-dateutil all 2.8.2-2 [78.3 kB] Get: 166 http://deb.debian.org/debian bookworm/main i386 python3-decorator all 5.1.1-3 [14.9 kB] Get: 167 http://deb.debian.org/debian bookworm/main i386 python3-roman all 3.3-3 [9880 B] Get: 168 http://deb.debian.org/debian bookworm/main i386 python3-docutils all 0.19+dfsg-6 [382 kB] Get: 169 http://deb.debian.org/debian bookworm/main i386 python3-ply all 3.11-5 [65.8 kB] Get: 170 http://deb.debian.org/debian bookworm/main i386 python3-pythran i386 0.11.0+ds-7 [427 kB] Get: 171 http://deb.debian.org/debian bookworm/main i386 python3-scipy i386 1.10.1-2 [15.2 MB] Get: 172 http://deb.debian.org/debian bookworm/main i386 python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get: 173 http://deb.debian.org/debian bookworm/main i386 python3-mpmath all 1.2.1-2 [418 kB] Get: 174 http://deb.debian.org/debian bookworm/main i386 python3-sympy all 1.11.1-1 [4358 kB] Get: 175 http://deb.debian.org/debian bookworm/main i386 python3-fs all 2.4.16-2 [95.2 kB] Get: 176 http://deb.debian.org/debian bookworm/main i386 python3-lxml i386 4.9.2-1+b1 [1182 kB] Get: 177 http://deb.debian.org/debian bookworm/main i386 python3-lz4 i386 4.0.2+dfsg-1+b2 [25.1 kB] Get: 178 http://deb.debian.org/debian bookworm/main i386 unicode-data all 15.0.0-1 [7984 kB] Get: 179 http://deb.debian.org/debian bookworm/main i386 python3-fonttools i386 4.38.0-1+b1 [1010 kB] Get: 180 http://deb.debian.org/debian bookworm/main i386 python3-idna all 3.3-1 [39.4 kB] Get: 181 http://deb.debian.org/debian bookworm/main i386 python3-imagesize all 1.4.1-1 [6688 B] Get: 182 http://deb.debian.org/debian bookworm/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 183 http://deb.debian.org/debian bookworm/main i386 python3-markupsafe i386 2.1.2-1+b1 [13.3 kB] Get: 184 http://deb.debian.org/debian bookworm/main i386 python3-jinja2 all 3.1.2-1 [119 kB] Get: 185 http://deb.debian.org/debian bookworm/main i386 python3-kiwisolver i386 1.4.4-1+b1 [63.0 kB] Get: 186 http://deb.debian.org/debian bookworm/main i386 python3-pil i386 9.4.0-1.1+b1 [473 kB] Get: 187 http://deb.debian.org/debian bookworm/main i386 python3-tk i386 3.11.2-3 [99.2 kB] Get: 188 http://deb.debian.org/debian bookworm/main i386 python3-pil.imagetk i386 9.4.0-1.1+b1 [74.7 kB] Get: 189 http://deb.debian.org/debian bookworm/main i386 python3-pyparsing all 3.0.9-1 [138 kB] Get: 190 http://deb.debian.org/debian bookworm/main i386 python3-packaging all 23.0-1 [32.5 kB] Get: 191 http://deb.debian.org/debian bookworm/main i386 python3-matplotlib i386 3.6.3-1+b1 [6891 kB] Get: 192 http://deb.debian.org/debian bookworm/main i386 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 193 http://deb.debian.org/debian bookworm/main i386 sphinx-common all 5.3.0-4 [653 kB] Get: 194 http://deb.debian.org/debian bookworm/main i386 python3-pygments all 2.14.0+dfsg-1 [783 kB] Get: 195 http://deb.debian.org/debian bookworm/main i386 python3-urllib3 all 1.26.12-1 [117 kB] Get: 196 http://deb.debian.org/debian bookworm/main i386 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get: 197 http://deb.debian.org/debian bookworm/main i386 python3-snowballstemmer all 2.2.0-2 [57.8 kB] Get: 198 http://deb.debian.org/debian bookworm/main i386 python3-sphinx all 5.3.0-4 [549 kB] Get: 199 http://deb.debian.org/debian bookworm/main i386 python3-numpydoc all 1.5.0-1 [43.0 kB] Get: 200 http://deb.debian.org/debian bookworm/main i386 python3-pandas-lib i386 1.5.3+dfsg-2 [3382 kB] Get: 201 http://deb.debian.org/debian bookworm/main i386 python3-pandas all 1.5.3+dfsg-2 [2885 kB] Get: 202 http://deb.debian.org/debian bookworm/main i386 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 203 http://deb.debian.org/debian bookworm/main i386 python3-psutil i386 5.9.4-1+b1 [190 kB] Get: 204 http://deb.debian.org/debian bookworm/main i386 python3-py all 1.11.0-1 [89.2 kB] Get: 205 http://deb.debian.org/debian bookworm/main i386 python3-pysam i386 0.20.0+ds-3+b1 [1708 kB] Get: 206 http://deb.debian.org/debian bookworm/main i386 python3-pytest all 7.2.1-2 [236 kB] Get: 207 http://deb.debian.org/debian bookworm/main i386 python3-setuptools all 66.1.1-1 [521 kB] Get: 208 http://deb.debian.org/debian bookworm/main i386 python3-yaml i386 6.0-3+b2 [119 kB] Get: 209 http://deb.debian.org/debian bookworm/main i386 zip i386 3.0-13 [236 kB] Get: 210 http://deb.debian.org/debian bookworm/main i386 unzip i386 6.0-28 [166 kB] Get: 211 http://deb.debian.org/debian bookworm/main i386 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 212 http://deb.debian.org/debian bookworm/main i386 r-base-core i386 4.2.2.20221110-2 [26.1 MB] Fetched 171 MB in 7s (26.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.2-6) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.5.0-1_i386.deb ... Unpacking libexpat1:i386 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_i386.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:i386 (3.11.2-6) ... Setting up libexpat1:i386 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19920 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_i386.deb ... 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Setting up libxsimd-dev:i386 (8.1.0-7) ... Setting up zip (3.0-13) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libexpat1-dev:i386 (2.5.0-1) ... Setting up libjpeg62-turbo:i386 (1:2.1.5-2) ... Setting up libx11-data (2:1.8.4-2) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libfribidi0:i386 (1.0.8-2.1) ... Setting up libimagequant0:i386 (2.17.0-1) ... Setting up libpng16-16:i386 (1.6.39-2) ... Setting up libtcl8.6:i386 (8.6.13+dfsg-2) ... Setting up autopoint (0.21-12) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libsasl2-2:i386 (2.1.28+dfsg-10) ... Setting up libgfortran5:i386 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:i386 (1.2.4-0.1) ... Setting up zlib1g-dev:i386 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libtiff6:i386 (4.5.0-5) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libjson-perl (4.10000-1) ... Setting up libopenjp2-7:i386 (2.5.0-1+b1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libthai-data (0.1.29-1) ... Setting up libssh2-1:i386 (1.10.0-3+b1) ... Setting up sgml-base (1.31) ... Setting up libboost-dev:i386 (1.74.0.3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.6.3-1) ... Setting up openssl (3.0.8-1) ... Setting up libwebpmux3:i386 (1.2.4-0.1) ... Setting up libbsd0:i386 (0.11.7-2) ... Setting up libelf1:i386 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:i386 (2.9.14+dfsg-1.2) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up bedtools (2.30.0+dfsg-3) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libice6:i386 (2:1.0.10-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up liblapack3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libxcb1:i386 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libopenblas0-pthread:i386 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/i386-linux-gnu/libopenblas.so.0 (libopenblas.so.0-i386-linux-gnu) in auto mode Setting up libtool (2.4.7-5) ... Setting up libxcb-render0:i386 (1.15-1) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libwebpdemux2:i386 (1.2.4-0.1) ... Setting up libreadline8:i386 (8.2-1.3) ... Setting up libxcb-shm0:i386 (1.15-1) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:i386 (0.1.29-1) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:i386 (2.12.1+dfsg-5) ... Setting up ucf (3.0043+nmu1) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libopenblas0:i386 (0.3.21+ds-4) ... Setting up groff-base (1.22.4-10) ... Setting up xml-core (0.18+nmu1) ... Setting up libxslt1.1:i386 (1.1.35-1) ... Setting up libcurl4:i386 (7.88.1-9) ... Setting up libx11-6:i386 (2:1.8.4-2) ... Setting up libharfbuzz0b:i386 (6.0.0+dfsg-3) ... Setting up libfontconfig1:i386 (2.14.1-4) ... Setting up libsm6:i386 (2:1.2.3-1) ... Setting up liblbfgsb0:i386 (3.0+dfsg.4-1) ... Setting up libopenblas-pthread-dev:i386 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/i386-linux-gnu/libopenblas.so (libopenblas.so-i386-linux-gnu) in auto mode Setting up libpaper1:i386 (1.1.29) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libxrender1:i386 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:i386 (3.11.2-6) ... Setting up libpango-1.0-0:i386 (1.50.12+ds-1) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:i386 (7.88.1-9) ... Setting up libpaper-utils (1.1.29) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:i386 (1.16.0-7) ... Setting up libopenblas-dev:i386 (0.3.21+ds-4) ... Setting up libraqm0:i386 (0.7.0-4.1) ... Setting up sphinx-common (5.3.0-4) ... Setting up libxt6:i386 (1:1.2.1-1.1) ... Setting up libxss1:i386 (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:i386 (1.50.12+ds-1) ... Setting up libpangocairo-1.0-0:i386 (1.50.12+ds-1) ... Setting up libpython3-stdlib:i386 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libxft2:i386 (2.3.6-1) ... Setting up libhts3:i386 (1.16+ds-3) ... Setting up libpython3.11:i386 (3.11.2-6) ... Setting up libtk8.6:i386 (8.6.13-2) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-markupsafe (2.1.2-1+b1) ... Setting up python3-psutil (5.9.4-1+b1) ... Setting up python3-tz (2022.7.1-3) ... Setting up python3-six (1.16.0-4) ... Setting up python3-roman (3.3-3) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-jinja2 (3.1.2-1) ... Setting up python3-packaging (23.0-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-snowballstemmer (2.2.0-2) ... Setting up libpython3.11-dev:i386 (3.11.2-6) ... Setting up python3-brotli (1.0.9-2+b6) ... Setting up python3-cycler (0.11.0-1) ... Setting up r-base-core (4.2.2.20221110-2) ... Creating config file /etc/R/Renviron with new version Setting up python3-kiwisolver (1.4.4-1+b1) ... Setting up python3-idna (3.3-1) ... Setting up cython3 (0.29.32-2+b1) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-lxml:i386 (4.9.2-1+b1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-appdirs (1.4.4-3) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.11.1-1) ... Setting up python3-attr (22.2.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up python3-pysam (0.20.0+ds-3+b1) ... Setting up libpython3-dev:i386 (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-babel (2.10.3-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-lz4 (4.0.2+dfsg-1+b2) ... Setting up python3.11-dev (3.11.2-6) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-alabaster (0.7.12-1) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-ply (3.11-5) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-yaml (6.0-3+b2) ... Setting up python3-tk:i386 (3.11.2-3) ... Setting up python3-fs (2.4.16-2) ... Setting up python3-beniget (0.4.1-3) ... Setting up python3-pygments (2.14.0+dfsg-1) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up libpython3-all-dev:i386 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-contourpy (1.0.7-1+b1) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-pandas-lib:i386 (1.5.3+dfsg-2) ... Setting up python3-pandas (1.5.3+dfsg-2) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-scipy (1.10.1-2) ... Setting up python3-pil:i386 (9.4.0-1.1+b1) ... Setting up python3-pil.imagetk:i386 (9.4.0-1.1+b1) ... Setting up python3-ufolib2 (0.14.0+dfsg1-1) ... Setting up python3-fonttools (4.38.0-1+b1) ... Setting up python3-matplotlib (3.6.3-1+b1) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.19+dfsg-6) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.19+dfsg-6) ... Setting up python3-sphinx (5.3.0-4) ... Setting up python3-numpydoc (1.5.0-1) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... usrmerge is already the newest version (35). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/22264/tmp/hooks/A99_set_merged_usr starting Re-configuring usrmerge... removed '/etc/unsupported-skip-usrmerge-conversion' The system has been successfully converted. I: user script /srv/workspace/pbuilder/22264/tmp/hooks/A99_set_merged_usr finished I: Running cd /build/python-pybedtools-0.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pybedtools_0.9.0-4_source.changes dpkg-buildpackage: info: source package python-pybedtools dpkg-buildpackage: info: source version 0.9.0-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-pybedtools-0.9.0' /bin/rm -rf fakehome .eggs .pybuild /bin/rm -rf debian/python3-pybedtools debian/files /bin/rm -rf pybedtools.egg-info /bin/rm -rf pybedtools/scripts/__pycache__/ /bin/rm -rf pybedtools/contrib/__pycache__/ /bin/rm -rf pybedtools/__pycache__/ find pybedtools -name "*.so" -o -name "*.o" | xargs -r rm rm -rf build /bin/rm -rf pybedtools/cbedtools.cpp pybedtools/featurefuncs.cpp find docs/source/autodocs/ -name "*.rst" | xargs -r /bin/rm # dh_auto_clean make[1]: Leaving directory '/build/python-pybedtools-0.9.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar. if not hasattr(numpy, method): /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar. obj = getattr(themodule, elem) running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/python-pybedtools-0.9.0' python3 setup.py cythonize /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar. if not hasattr(numpy, method): /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar. obj = getattr(themodule, elem) running cythonize /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-pybedtools-0.9.0/pybedtools/cbedtools.pxd tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-pybedtools-0.9.0/pybedtools/featurefuncs.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling pybedtools/cbedtools.pyx because it changed. Compiling pybedtools/featurefuncs.pyx because it changed. [1/2] Cythonizing pybedtools/cbedtools.pyx [2/2] Cythonizing pybedtools/featurefuncs.pyx dh_auto_build I: pybuild base:240: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar. if not hasattr(numpy, method): /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar. obj = getattr(themodule, elem) running build running build_py creating /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/helpers.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/stats.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/paths.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/bedtool.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/parallel.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/filenames.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/settings.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/version.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/logger.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/genome_registry.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/__init__.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools creating /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_issues.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/genomepy_integration.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_cbedtools.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_contrib.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_iter.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_gzip_support.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_1.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_len_leak.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/__init__.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/regression_tests.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/tfuncs.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_helpers.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_pathlib.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test creating /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/venn_maker.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/bigwig.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/bigbed.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/long_range_interaction.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/plotting.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/__init__.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/intersection_matrix.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib creating /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/__init__.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data running egg_info creating pybedtools.egg-info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt writing manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' adding license file 'LICENSE.txt' writing manifest file 'pybedtools.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pybedtools.include' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'pybedtools.include' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'pybedtools.include' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'pybedtools.include' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) copying pybedtools/_Window.pyx -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/cbedtools.cpp -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/cbedtools.pxd -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/cbedtools.pyx -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/featurefuncs.cpp -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/featurefuncs.pyx -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools creating /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/include/bedFile.cpp -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/include/bedFile.h -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/include/fileType.cpp -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/include/fileType.h -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/include/gzstream.cpp -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/include/gzstream.h -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/include/lineFileUtilities.h -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/test/data/a.links.html -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/small.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test.fa -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/v.vcf -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg38-problem.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/venn.c.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/y.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/bedpe.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.50.200.bam.bai -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.gff -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg38-base.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.igv_script -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/snps.bed.gz -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue319.vcf.gz -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/164.gtf -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/venn.b.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg19.gff -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue319.out.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.50.200.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_peaks.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/vcf-stderr-test.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.sorted.bam.bai -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.1.100.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/bedpe2.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/1000genomes-example.vcf -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.gff.gz -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/democonfig.yaml -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/x.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/x.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/reads.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.1.100.bam.bai -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue_121.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_bedpe.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/genome.fa -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/tag_test2.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.othersort.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.cram -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue319.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/tag_test1.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/small.fastq -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/vcf-stderr-test.vcf -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.sorted.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/mm9.bed12 -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_tsses.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/m1.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/expand_test.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/exons.gff -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test.fa.fai -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/d.gff -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/c.gff -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/b.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/multibamcov_test.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/gchart-expected.png -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/mpl-expected.png -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/prevent_open_file_regression -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_cases.yaml -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_merge215.yaml -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_merge227.yaml -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_shuffle215.yaml -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_shuffle227.yaml -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test running build_ext building 'pybedtools.cbedtools' extension INFO: C compiler: i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating build creating build/temp.linux-i386-cpython-311 creating build/temp.linux-i386-cpython-311/pybedtools creating build/temp.linux-i386-cpython-311/pybedtools/include INFO: compile options: '-Ipybedtools/include/ -I/usr/include/python3.11 -c' INFO: i686-linux-gnu-gcc: pybedtools/cbedtools.cpp INFO: i686-linux-gnu-gcc: pybedtools/include/bedFile.cpp INFO: i686-linux-gnu-gcc: pybedtools/include/fileType.cpp INFO: i686-linux-gnu-gcc: pybedtools/include/gzstream.cpp In file included from pybedtools/include/bedFile.cpp:12: pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)': pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ In file included from pybedtools/cbedtools.cpp:796: pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)': pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ INFO: i686-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-cpython-311/pybedtools/cbedtools.o build/temp.linux-i386-cpython-311/pybedtools/include/bedFile.o build/temp.linux-i386-cpython-311/pybedtools/include/fileType.o build/temp.linux-i386-cpython-311/pybedtools/include/gzstream.o -L/usr/lib/i386-linux-gnu -lstdc++ -lz -o /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.cpython-311-i386-linux-gnu.so building 'pybedtools.featurefuncs' extension INFO: C compiler: i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-Ipybedtools/include/ -I/usr/include/python3.11 -c' INFO: i686-linux-gnu-gcc: pybedtools/featurefuncs.cpp INFO: i686-linux-gnu-gcc: pybedtools/include/bedFile.cpp INFO: i686-linux-gnu-gcc: pybedtools/include/fileType.cpp INFO: i686-linux-gnu-gcc: pybedtools/include/gzstream.cpp In file included from pybedtools/featurefuncs.cpp:796: pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)': pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ In file included from pybedtools/include/bedFile.cpp:12: pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)': pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ INFO: i686-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-cpython-311/pybedtools/featurefuncs.o build/temp.linux-i386-cpython-311/pybedtools/include/bedFile.o build/temp.linux-i386-cpython-311/pybedtools/include/fileType.o build/temp.linux-i386-cpython-311/pybedtools/include/gzstream.o -L/usr/lib/i386-linux-gnu -lstdc++ -lz -o /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/featurefuncs.cpython-311-i386-linux-gnu.so python3 setup.py develop --user /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar. if not hasattr(numpy, method): /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar. obj = getattr(themodule, elem) running develop /usr/lib/python3/dist-packages/setuptools/command/easy_install.py:146: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools. warnings.warn( /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running egg_info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' adding license file 'LICENSE.txt' writing manifest file 'pybedtools.egg-info/SOURCES.txt' running build_ext building 'pybedtools.cbedtools' extension INFO: C compiler: i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating build/temp.linux-i686-cpython-311 creating build/temp.linux-i686-cpython-311/pybedtools creating build/temp.linux-i686-cpython-311/pybedtools/include INFO: compile options: '-Ipybedtools/include/ -I/usr/include/python3.11 -c' INFO: i686-linux-gnu-gcc: pybedtools/cbedtools.cpp INFO: i686-linux-gnu-gcc: pybedtools/include/bedFile.cpp INFO: i686-linux-gnu-gcc: pybedtools/include/fileType.cpp INFO: i686-linux-gnu-gcc: pybedtools/include/gzstream.cpp In file included from pybedtools/cbedtools.cpp:796: pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)': pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ In file included from pybedtools/include/bedFile.cpp:12: pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)': pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ INFO: i686-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/pybedtools/cbedtools.o build/temp.linux-i686-cpython-311/pybedtools/include/bedFile.o build/temp.linux-i686-cpython-311/pybedtools/include/fileType.o build/temp.linux-i686-cpython-311/pybedtools/include/gzstream.o -L/usr/lib/i386-linux-gnu -lstdc++ -lz -o /build/python-pybedtools-0.9.0/pybedtools/cbedtools.cpython-311-i386-linux-gnu.so building 'pybedtools.featurefuncs' extension INFO: C compiler: i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-Ipybedtools/include/ -I/usr/include/python3.11 -c' INFO: i686-linux-gnu-gcc: pybedtools/featurefuncs.cpp INFO: i686-linux-gnu-gcc: pybedtools/include/bedFile.cpp INFO: i686-linux-gnu-gcc: pybedtools/include/fileType.cpp INFO: i686-linux-gnu-gcc: pybedtools/include/gzstream.cpp In file included from pybedtools/include/bedFile.cpp:12: pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)': pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ In file included from pybedtools/featurefuncs.cpp:796: pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)': pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ INFO: i686-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/pybedtools/featurefuncs.o build/temp.linux-i686-cpython-311/pybedtools/include/bedFile.o build/temp.linux-i686-cpython-311/pybedtools/include/fileType.o build/temp.linux-i686-cpython-311/pybedtools/include/gzstream.o -L/usr/lib/i386-linux-gnu -lstdc++ -lz -o /build/python-pybedtools-0.9.0/pybedtools/featurefuncs.cpython-311-i386-linux-gnu.so Creating /build/python-pybedtools-0.9.0/fakehome/.local/lib/python3.11/site-packages/pybedtools.egg-link (link to .) Adding pybedtools 0.9.0 to easy-install.pth file Installed /build/python-pybedtools-0.9.0 Processing dependencies for pybedtools==0.9.0 Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /usr/lib/python3/dist-packages Searching for pysam==0.20.0 Best match: pysam 0.20.0 Adding pysam 0.20.0 to easy-install.pth file Using /usr/lib/python3/dist-packages Finished processing dependencies for pybedtools==0.9.0 python3 setup.py build_sphinx /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar. if not hasattr(numpy, method): /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar. obj = getattr(themodule, elem) running build_sphinx Running Sphinx v5.3.0 making output directory... done [autosummary] generating autosummary for: 3-brief-examples.rst, FAQs.rst, autodoc_source.rst, changes.rst, create-a-bedtool-tutorial.rst, default-arguments.rst, each.rst, filtering.rst, flow-of-commands.rst, history.rst, ..., topical-create-a-bedtool.rst, topical-design-principles.rst, topical-documentation-contents.rst, topical-genome.rst, topical-iterators.rst, topical-low-level-ops.rst, topical-random.rst, topical-saving.rst, topical-wrapping.rst, tutorial-contents.rst generated new fontManager [autosummary] generating autosummary for: /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.bedtool.BedTool.absolute_distance.rst, /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.bedtool.BedTool.all_hits.rst, /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.bedtool.BedTool.annotate.rst, /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.bedtool.BedTool.any_hits.rst, /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.bedtool.BedTool.as_intervalfile.rst, /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.bedtool.BedTool.at.rst, /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_bed.rst, /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_fastq.rst, /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bed6.rst, /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bedpe_to_bam.rst, ..., /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.helpers.set_tempdir.rst, /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.parallel.parallel_apply.rst, /build/python-pybedtools-0.9.0/docs/source/pybedtools.featurefuncs.add_color.rst, /build/python-pybedtools-0.9.0/docs/source/pybedtools.featurefuncs.bedgraph_scale.rst, /build/python-pybedtools-0.9.0/docs/source/pybedtools.featurefuncs.extend_fields.rst, /build/python-pybedtools-0.9.0/docs/source/pybedtools.featurefuncs.five_prime.rst, /build/python-pybedtools-0.9.0/docs/source/pybedtools.featurefuncs.greater_than.rst, /build/python-pybedtools-0.9.0/docs/source/pybedtools.featurefuncs.less_than.rst, /build/python-pybedtools-0.9.0/docs/source/pybedtools.featurefuncs.normalized_to_length.rst, /build/python-pybedtools-0.9.0/docs/source/pybedtools.featurefuncs.three_prime.rst building [mo]: targets for 0 po files that are out of date building [html]: targets for 48 source files that are out of date updating environment: [new config] 157 added, 0 changed, 0 removed reading sources... 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Possible hints: * AttributeError: type object 'Track' has no attribute 'colorbar' * AttributeError: type object 'Track' has no attribute 'Track' * KeyError: 'Track' * ImportError: * ModuleNotFoundError: No module named 'pybedtools.contrib.plotting.Track'; 'pybedtools.contrib.plotting' is not a package * ModuleNotFoundError: No module named 'Track' /build/python-pybedtools-0.9.0/docs/source/topical-genome.rst:55: ERROR: Unknown target name: "genomepy". looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 0%] 3-brief-examples writing output... [ 1%] FAQs writing output... [ 1%] autodoc_source writing output... [ 2%] autodocs/pybedtools.bedtool.BedTool writing output... [ 3%] autodocs/pybedtools.bedtool.BedTool.absolute_distance writing output... [ 3%] autodocs/pybedtools.bedtool.BedTool.all_hits writing output... [ 4%] autodocs/pybedtools.bedtool.BedTool.annotate writing output... 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[ 92%] pybedtools.helpers highlighting module code... [100%] pybedtools.parallel writing additional pages... search done copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 9 warnings. The HTML pages are in build/sphinx/html. make[1]: Leaving directory '/build/python-pybedtools-0.9.0' dh_auto_test -O--buildsystem=pybuild create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_installdirs -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-pybedtools-0.9.0/debian/python3-pybedtools /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar. if not hasattr(numpy, method): /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar. obj = getattr(themodule, elem) running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py copying pybedtools/version.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools running egg_info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' adding license file 'LICENSE.txt' writing manifest file 'pybedtools.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pybedtools.include' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'pybedtools.include' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'pybedtools.include' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'pybedtools.include' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) running build_ext running install_lib creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11 creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.cpython-311-i386-linux-gnu.so -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_merge227.yaml -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_issues.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_shuffle227.yaml -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/a.links.html -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/small.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test.fa -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/v.vcf -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/hg38-problem.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/venn.c.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/y.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/bedpe.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.50.200.bam.bai -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.gff -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/hg38-base.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/a.igv_script -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/snps.bed.gz -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/issue319.vcf.gz -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/164.gtf -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/venn.b.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/hg19.gff -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/issue319.out.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.50.200.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test_peaks.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/vcf-stderr-test.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.sorted.bam.bai -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.1.100.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/bedpe2.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/1000genomes-example.vcf -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.gff.gz -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/democonfig.yaml -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/x.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/x.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/reads.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.1.100.bam.bai -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/issue_121.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test_bedpe.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/genome.fa -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/tag_test2.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.othersort.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.cram -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/issue319.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/tag_test1.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/small.fastq -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/vcf-stderr-test.vcf -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.sorted.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/mm9.bed12 -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test_tsses.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/__init__.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/m1.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/expand_test.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/exons.gff -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test.fa.fai -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/d.gff -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/c.gff -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/b.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/a.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/multibamcov_test.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/genomepy_integration.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_shuffle215.yaml -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_merge215.yaml -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/prevent_open_file_regression -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_cbedtools.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_contrib.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_iter.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/gchart-expected.png -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_gzip_support.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/mpl-expected.png -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_1.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_len_leak.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_cases.yaml -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/__init__.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/regression_tests.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/tfuncs.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_helpers.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_pathlib.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/featurefuncs.pyx -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/helpers.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/stats.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/paths.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/bedtool.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/parallel.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/featurefuncs.cpython-311-i386-linux-gnu.so -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/venn_maker.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/bigwig.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/bigbed.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/long_range_interaction.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/plotting.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/__init__.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/intersection_matrix.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/filenames.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/settings.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/_Window.pyx -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/version.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/fileType.cpp -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/bedFile.cpp -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/gzstream.cpp -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/lineFileUtilities.h -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/bedFile.h -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/fileType.h -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/gzstream.h -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/logger.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/genome_registry.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.pxd -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.pyx -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.cpp -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/__init__.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/featurefuncs.cpp -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_issues.py to test_issues.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/genomepy_integration.py to genomepy_integration.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_cbedtools.py to test_cbedtools.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_contrib.py to test_contrib.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_iter.py to test_iter.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_gzip_support.py to test_gzip_support.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_1.py to test_1.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_len_leak.py to test_len_leak.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/regression_tests.py to regression_tests.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/tfuncs.py to tfuncs.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_helpers.py to test_helpers.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_pathlib.py to test_pathlib.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/helpers.py to helpers.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/stats.py to stats.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/paths.py to paths.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/bedtool.py to bedtool.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/parallel.py to parallel.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/venn_maker.py to venn_maker.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/bigwig.py to bigwig.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/bigbed.py to bigbed.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/long_range_interaction.py to long_range_interaction.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/plotting.py to plotting.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/intersection_matrix.py to intersection_matrix.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/filenames.py to filenames.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/settings.py to settings.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/version.py to version.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/logger.py to logger.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/genome_registry.py to genome_registry.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/__init__.py to __init__.cpython-311.pyc running install_egg_info Copying pybedtools.egg-info to /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools-0.9.0.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/python-pybedtools-0.9.0' dh_install rm -f debian/python3-pybedtools/usr/lib/python3*/dist-packages/pybedtools/test/prevent_open_file_regression make[1]: Leaving directory '/build/python-pybedtools-0.9.0' dh_installdocs -O--buildsystem=pybuild dh_installdocs: warning: Cannot auto-detect main package for python-pybedtools-doc. If the default is wrong, please use --doc-main-package dh_sphinxdoc -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installexamples: warning: Cannot auto-detect main package for python-pybedtools-doc. If the default is wrong, please use --doc-main-package dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package pybedtools-bin: substitution variable ${python3:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pybedtools-dbgsym' in '../python3-pybedtools-dbgsym_0.9.0-4_i386.deb'. dpkg-deb: building package 'python-pybedtools-doc' in '../python-pybedtools-doc_0.9.0-4_all.deb'. dpkg-deb: building package 'pybedtools-bin' in '../pybedtools-bin_0.9.0-4_all.deb'. dpkg-deb: building package 'python3-pybedtools' in '../python3-pybedtools_0.9.0-4_i386.deb'. dpkg-genbuildinfo --build=binary -O../python-pybedtools_0.9.0-4_i386.buildinfo dpkg-genchanges --build=binary -O../python-pybedtools_0.9.0-4_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: user script /srv/workspace/pbuilder/22264/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/22264/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/22264 and its subdirectories I: Current time: Thu May 11 04:05:29 +14 2023 I: pbuilder-time-stamp: 1683727529