I: pbuilder: network access will be disabled during build I: Current time: Thu Jan 18 04:08:10 -12 2024 I: pbuilder-time-stamp: 1705594090 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [librostlab_1.0.20-12.dsc] I: copying [./librostlab_1.0.20.orig.tar.gz] I: copying [./librostlab_1.0.20-12.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Apr 25 07:47:21 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./librostlab_1.0.20-12.dsc: no acceptable signature found dpkg-source: info: extracting librostlab in librostlab-1.0.20 dpkg-source: info: unpacking librostlab_1.0.20.orig.tar.gz dpkg-source: info: unpacking librostlab_1.0.20-12.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/12499/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='4d01c064b5da419782a7196250628e2c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='12499' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.uVjQqn6y/pbuilderrc_QaKP --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.uVjQqn6y/b1 --logfile b1/build.log librostlab_1.0.20-12.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos2-i386 6.1.0-17-686-pae #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) i686 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 23 2023 bash -rwxr-xr-x 3 root root 38404 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 23 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Mar 23 2023 findmnt -rwsr-xr-x 1 root root 30240 Mar 23 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 23 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 23 2023 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 23 2023 more -rwsr-xr-x 1 root root 58912 Mar 23 2023 mount -rwxr-xr-x 1 root root 13856 Mar 23 2023 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Jul 28 23:46 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 23 2023 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 2023 tar -rwxr-xr-x 1 root root 13860 Jul 28 23:46 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 23 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 23 2023 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 23 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/12499/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-linktree, debhelper, doxygen, graphviz, texlive-latex-recommended, texlive-fonts-recommended, texlive-latex-extra, texlive-plain-generic, sphinx-common, d-shlibs dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18156 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-linktree; however: Package dh-linktree is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-plain-generic; however: Package texlive-plain-generic is not installed. pbuilder-satisfydepends-dummy depends on sphinx-common; however: Package sphinx-common is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-linktree{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} intltool-debian{a} libabsl20220623{a} libaom3{a} libapache-pom-java{a} libarchive-zip-perl{a} libavif15{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcdt5{a} libcgraph6{a} libclang-cpp14{a} libclang1-14{a} libcommons-logging-java{a} libcommons-parent-java{a} libdatrie1{a} libdav1d6{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libglib2.0-0{a} libgraphite2-3{a} libgts-0.7-5{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheif1{a} libice6{a} libicu72{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libkpathsea6{a} liblab-gamut1{a} liblerc4{a} libllvm14{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libnuma1{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpathplan4{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libptexenc1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} librav1e0{a} libreadline8{a} libsm6{a} libsub-override-perl{a} libsynctex2{a} libteckit0{a} libtexlua53-5{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx265-199{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} libyuv0{a} libz3-4{a} libzzip-0-13{a} m4{a} man-db{a} media-types{a} po-debconf{a} preview-latex-style{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sphinx-common{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} texlive-plain-generic{a} ucf{a} x11-common{a} xdg-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl default-jre dvisvgm fonts-liberation2 javascript-common libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libgts-bin libjson-xs-perl libltdl-dev libmail-sendmail-perl libnet-dbus-perl libspreadsheet-parseexcel-perl libx11-protocol-perl lmodern lynx python3-sphinx ruby shared-mime-info tex-gyre tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 145 newly installed, 0 to remove and 0 not upgraded. Need to get 224 MB of archives. After unpacking 803 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 libpython3.11-minimal i386 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 python3.11-minimal i386 3.11.2-6 [2130 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 python3-minimal i386 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 libpython3.11-stdlib i386 3.11.2-6 [1799 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 python3.11 i386 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 libpython3-stdlib i386 3.11.2-1+b1 [9308 B] Get: 11 http://deb.debian.org/debian bookworm/main i386 python3 i386 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 ucf all 3.0043+nmu1 [55.2 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 d-shlibs all 0.104 [18.6 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 34 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 36 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.3~deb12u1 [720 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 dh-linktree all 0.9 [11.3 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 libbsd0 i386 0.11.7-2 [121 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 libedit2 i386 3.1-20221030-2 [97.2 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 libz3-4 i386 4.8.12-3.1 [7853 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 libllvm14 i386 1:14.0.6-12 [25.0 MB] Get: 49 http://deb.debian.org/debian bookworm/main i386 libclang-cpp14 i386 1:14.0.6-12 [12.7 MB] Get: 50 http://deb.debian.org/debian bookworm/main i386 libclang1-14 i386 1:14.0.6-12 [7086 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 doxygen i386 1.9.4-4 [4836 kB] Get: 52 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 libpng16-16 i386 1.6.39-2 [283 kB] Get: 54 http://deb.debian.org/debian bookworm/main i386 libfreetype6 i386 2.12.1+dfsg-5 [410 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 56 http://deb.debian.org/debian bookworm/main i386 fontconfig-config i386 2.14.1-4 [315 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 libfontconfig1 i386 2.14.1-4 [398 kB] Get: 58 http://deb.debian.org/debian bookworm/main i386 fontconfig i386 2.14.1-4 [450 kB] Get: 59 http://deb.debian.org/debian bookworm/main i386 fonts-lmodern all 2.005-1 [4540 kB] Get: 60 http://deb.debian.org/debian bookworm/main i386 libcdt5 i386 2.42.2-7+b3 [40.5 kB] Get: 61 http://deb.debian.org/debian bookworm/main i386 libcgraph6 i386 2.42.2-7+b3 [67.2 kB] Get: 62 http://deb.debian.org/debian bookworm/main i386 libaom3 i386 3.6.0-1 [1895 kB] Get: 63 http://deb.debian.org/debian bookworm/main i386 libdav1d6 i386 1.0.0-2 [316 kB] Get: 64 http://deb.debian.org/debian bookworm/main i386 libabsl20220623 i386 20220623.1-1 [444 kB] Get: 65 http://deb.debian.org/debian bookworm/main i386 libgav1-1 i386 0.18.0-1+b1 [307 kB] Get: 66 http://deb.debian.org/debian bookworm/main i386 librav1e0 i386 0.5.1-6 [615 kB] Get: 67 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo i386 1:2.1.5-2 [169 kB] Get: 68 http://deb.debian.org/debian bookworm/main i386 libyuv0 i386 0.0~git20230123.b2528b0-1 [108 kB] Get: 69 http://deb.debian.org/debian bookworm/main i386 libavif15 i386 0.11.1-1 [101 kB] Get: 70 http://deb.debian.org/debian bookworm/main i386 libde265-0 i386 1.0.11-1+deb12u1 [193 kB] Get: 71 http://deb.debian.org/debian bookworm/main i386 libnuma1 i386 2.0.16-1 [22.7 kB] Get: 72 http://deb.debian.org/debian bookworm/main i386 libx265-199 i386 3.5-2+b1 [687 kB] Get: 73 http://deb.debian.org/debian bookworm/main i386 libheif1 i386 1.15.1-1 [230 kB] Get: 74 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB] Get: 75 http://deb.debian.org/debian bookworm/main i386 libjbig0 i386 2.1-6.1 [31.6 kB] Get: 76 http://deb.debian.org/debian bookworm/main i386 liblerc4 i386 4.0.0+ds-2 [181 kB] Get: 77 http://deb.debian.org/debian bookworm/main i386 libwebp7 i386 1.2.4-0.2+deb12u1 [294 kB] Get: 78 http://deb.debian.org/debian bookworm/main i386 libtiff6 i386 4.5.0-6+deb12u1 [332 kB] Get: 79 http://deb.debian.org/debian bookworm/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 80 http://deb.debian.org/debian bookworm/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 81 http://deb.debian.org/debian bookworm/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 82 http://deb.debian.org/debian bookworm/main i386 libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get: 83 http://deb.debian.org/debian bookworm/main i386 libx11-6 i386 2:1.8.4-2+deb12u2 [782 kB] Get: 84 http://deb.debian.org/debian bookworm/main i386 libxpm4 i386 1:3.5.12-1.1+deb12u1 [50.4 kB] Get: 85 http://deb.debian.org/debian bookworm/main i386 libgd3 i386 2.3.3-9 [129 kB] Get: 86 http://deb.debian.org/debian bookworm/main i386 libglib2.0-0 i386 2.74.6-2 [1467 kB] Get: 87 http://deb.debian.org/debian bookworm/main i386 libgts-0.7-5 i386 0.7.6+darcs121130-5+b1 [162 kB] Get: 88 http://deb.debian.org/debian bookworm/main i386 libpixman-1-0 i386 0.42.2-1 [548 kB] Get: 89 http://deb.debian.org/debian bookworm/main i386 libxcb-render0 i386 1.15-1 [116 kB] Get: 90 http://deb.debian.org/debian bookworm/main i386 libxcb-shm0 i386 1.15-1 [106 kB] Get: 91 http://deb.debian.org/debian bookworm/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 92 http://deb.debian.org/debian bookworm/main i386 libxrender1 i386 1:0.9.10-1.1 [34.1 kB] Get: 93 http://deb.debian.org/debian bookworm/main i386 libcairo2 i386 1.16.0-7 [627 kB] Get: 94 http://deb.debian.org/debian bookworm/main i386 libltdl7 i386 2.4.7-5 [394 kB] Get: 95 http://deb.debian.org/debian bookworm/main i386 libfribidi0 i386 1.0.8-2.1 [65.6 kB] Get: 96 http://deb.debian.org/debian bookworm/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB] Get: 97 http://deb.debian.org/debian bookworm/main i386 libharfbuzz0b i386 6.0.0+dfsg-3 [1966 kB] Get: 98 http://deb.debian.org/debian bookworm/main i386 libthai-data all 0.1.29-1 [176 kB] Get: 99 http://deb.debian.org/debian bookworm/main i386 libdatrie1 i386 0.2.13-2+b1 [45.0 kB] Get: 100 http://deb.debian.org/debian bookworm/main i386 libthai0 i386 0.1.29-1 [58.6 kB] Get: 101 http://deb.debian.org/debian bookworm/main i386 libpango-1.0-0 i386 1.50.12+ds-1 [220 kB] Get: 102 http://deb.debian.org/debian bookworm/main i386 libpangoft2-1.0-0 i386 1.50.12+ds-1 [50.5 kB] Get: 103 http://deb.debian.org/debian bookworm/main i386 libpangocairo-1.0-0 i386 1.50.12+ds-1 [35.4 kB] Get: 104 http://deb.debian.org/debian bookworm/main i386 libpathplan4 i386 2.42.2-7+b3 [42.3 kB] Get: 105 http://deb.debian.org/debian bookworm/main i386 libgvc6 i386 2.42.2-7+b3 [711 kB] Get: 106 http://deb.debian.org/debian bookworm/main i386 libgvpr2 i386 2.42.2-7+b3 [197 kB] Get: 107 http://deb.debian.org/debian bookworm/main i386 liblab-gamut1 i386 2.42.2-7+b3 [197 kB] Get: 108 http://deb.debian.org/debian bookworm/main i386 x11-common all 1:7.7+23 [252 kB] Get: 109 http://deb.debian.org/debian bookworm/main i386 libice6 i386 2:1.0.10-1 [60.8 kB] Get: 110 http://deb.debian.org/debian bookworm/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 111 http://deb.debian.org/debian bookworm/main i386 libxt6 i386 1:1.2.1-1.1 [192 kB] Get: 112 http://deb.debian.org/debian bookworm/main i386 libxmu6 i386 2:1.1.3-3 [62.5 kB] Get: 113 http://deb.debian.org/debian bookworm/main i386 libxaw7 i386 2:1.0.14-1 [209 kB] Get: 114 http://deb.debian.org/debian bookworm/main i386 graphviz i386 2.42.2-7+b3 [573 kB] Get: 115 http://deb.debian.org/debian bookworm/main i386 libapache-pom-java all 29-2 [5276 B] Get: 116 http://deb.debian.org/debian bookworm/main i386 libcommons-parent-java all 56-1 [10.8 kB] Get: 117 http://deb.debian.org/debian bookworm/main i386 libcommons-logging-java all 1.2-3 [62.4 kB] Get: 118 http://deb.debian.org/debian bookworm/main i386 libfontbox-java all 1:1.8.16-2 [211 kB] Get: 119 http://deb.debian.org/debian bookworm/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 120 http://deb.debian.org/debian bookworm/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 121 http://deb.debian.org/debian bookworm/main i386 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 122 http://deb.debian.org/debian bookworm/main i386 libjson-perl all 4.10000-1 [87.5 kB] Get: 123 http://deb.debian.org/debian bookworm/main i386 libkpathsea6 i386 2022.20220321.62855-5.1+deb12u1 [155 kB] Get: 124 http://deb.debian.org/debian bookworm/main i386 libpaper1 i386 1.1.29 [12.7 kB] Get: 125 http://deb.debian.org/debian bookworm/main i386 libpaper-utils i386 1.1.29 [8972 B] Get: 126 http://deb.debian.org/debian bookworm/main i386 libpdfbox-java all 1:1.8.16-2 [5205 kB] Get: 127 http://deb.debian.org/debian bookworm/main i386 libptexenc1 i386 2022.20220321.62855-5.1+deb12u1 [44.8 kB] Get: 128 http://deb.debian.org/debian bookworm/main i386 libsynctex2 i386 2022.20220321.62855-5.1+deb12u1 [62.5 kB] Get: 129 http://deb.debian.org/debian bookworm/main i386 libteckit0 i386 2.5.11+ds1-1+b1 [282 kB] Get: 130 http://deb.debian.org/debian bookworm/main i386 libtexlua53-5 i386 2022.20220321.62855-5.1+deb12u1 [126 kB] Get: 131 http://deb.debian.org/debian bookworm/main i386 libxi6 i386 2:1.8-1+b1 [86.2 kB] Get: 132 http://deb.debian.org/debian bookworm/main i386 libzzip-0-13 i386 0.13.72+dfsg.1-1.1 [60.1 kB] Get: 133 http://deb.debian.org/debian bookworm/main i386 tex-common all 6.18 [32.5 kB] Get: 134 http://deb.debian.org/debian bookworm/main i386 preview-latex-style all 12.2-1 [201 kB] Get: 135 http://deb.debian.org/debian bookworm/main i386 sphinx-common all 5.3.0-4 [653 kB] Get: 136 http://deb.debian.org/debian bookworm/main i386 t1utils i386 1.41-4 [62.3 kB] Get: 137 http://deb.debian.org/debian bookworm/main i386 texlive-binaries i386 2022.20220321.62855-5.1+deb12u1 [8537 kB] Get: 138 http://deb.debian.org/debian bookworm/main i386 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 139 http://deb.debian.org/debian bookworm/main i386 texlive-base all 2022.20230122-3 [21.9 MB] Get: 140 http://deb.debian.org/debian bookworm/main i386 texlive-fonts-recommended all 2022.20230122-3 [4988 kB] Get: 141 http://deb.debian.org/debian bookworm/main i386 texlive-latex-base all 2022.20230122-3 [1182 kB] Get: 142 http://deb.debian.org/debian bookworm/main i386 texlive-latex-recommended all 2022.20230122-3 [8880 kB] Get: 143 http://deb.debian.org/debian bookworm/main i386 texlive-pictures all 2022.20230122-3 [15.8 MB] Get: 144 http://deb.debian.org/debian bookworm/main i386 texlive-latex-extra all 2022.20230122-4 [19.2 MB] Get: 145 http://deb.debian.org/debian bookworm/main i386 texlive-plain-generic all 2022.20230122-4 [28.9 MB] Fetched 224 MB in 19s (11.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18156 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.2-6) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.5.0-1_i386.deb ... Unpacking libexpat1:i386 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_i386.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:i386 (3.11.2-6) ... Setting up libexpat1:i386 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18472 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_i386.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:i386. Preparing to unpack .../3-libreadline8_8.2-1.3_i386.deb ... Unpacking libreadline8:i386 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:i386. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_i386.deb ... Unpacking libpython3.11-stdlib:i386 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_i386.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18906 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_i386.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../003-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../006-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../008-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../009-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package ucf. Preparing to unpack .../011-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../012-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../013-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../014-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../015-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../016-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../017-d-shlibs_0.104_all.deb ... Unpacking d-shlibs (0.104) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../018-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../019-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../020-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../021-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../022-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../023-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../024-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../025-libelf1_0.188-2.1_i386.deb ... Unpacking libelf1:i386 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../026-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../027-libicu72_72.1-3_i386.deb ... Unpacking libicu72:i386 (72.1-3) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../028-libxml2_2.9.14+dfsg-1.3~deb12u1_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.3~deb12u1) ... Selecting previously unselected package gettext. Preparing to unpack .../029-gettext_0.21-12_i386.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../030-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../031-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../032-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package dh-linktree. Preparing to unpack .../033-dh-linktree_0.9_all.deb ... Unpacking dh-linktree (0.9) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../034-libbsd0_0.11.7-2_i386.deb ... Unpacking libbsd0:i386 (0.11.7-2) ... Selecting previously unselected package libedit2:i386. Preparing to unpack .../035-libedit2_3.1-20221030-2_i386.deb ... Unpacking libedit2:i386 (3.1-20221030-2) ... Selecting previously unselected package libz3-4:i386. Preparing to unpack .../036-libz3-4_4.8.12-3.1_i386.deb ... Unpacking libz3-4:i386 (4.8.12-3.1) ... Selecting previously unselected package libllvm14:i386. Preparing to unpack .../037-libllvm14_1%3a14.0.6-12_i386.deb ... Unpacking libllvm14:i386 (1:14.0.6-12) ... Selecting previously unselected package libclang-cpp14. Preparing to unpack .../038-libclang-cpp14_1%3a14.0.6-12_i386.deb ... Unpacking libclang-cpp14 (1:14.0.6-12) ... Selecting previously unselected package libclang1-14. Preparing to unpack .../039-libclang1-14_1%3a14.0.6-12_i386.deb ... Unpacking libclang1-14 (1:14.0.6-12) ... Selecting previously unselected package doxygen. Preparing to unpack .../040-doxygen_1.9.4-4_i386.deb ... Unpacking doxygen (1.9.4-4) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../041-libbrotli1_1.0.9-2+b6_i386.deb ... Unpacking libbrotli1:i386 (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:i386. Preparing to unpack .../042-libpng16-16_1.6.39-2_i386.deb ... Unpacking libpng16-16:i386 (1.6.39-2) ... Selecting previously unselected package libfreetype6:i386. Preparing to unpack .../043-libfreetype6_2.12.1+dfsg-5_i386.deb ... Unpacking libfreetype6:i386 (2.12.1+dfsg-5) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../044-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... Selecting previously unselected package fontconfig-config. 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Setting up libllvm14:i386 (1:14.0.6-12) ... Setting up libgvpr2:i386 (2.42.2-7+b3) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libx11-6:i386 (2:1.8.4-2+deb12u2) ... Setting up libharfbuzz0b:i386 (6.0.0+dfsg-3) ... Setting up libfontconfig1:i386 (2.14.1-4) ... Setting up libsm6:i386 (2:1.2.3-1) ... Setting up libpaper1:i386 (1.1.29) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libxpm4:i386 (1:3.5.12-1.1+deb12u1) ... Setting up libxrender1:i386 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:i386 (3.11.2-6) ... Setting up libpango-1.0-0:i386 (1.50.12+ds-1) ... Setting up libheif1:i386 (1.15.1-1) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up libclang1-14 (1:14.0.6-12) ... Setting up libpaper-utils (1.1.29) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:i386 (1.16.0-7) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up sphinx-common (5.3.0-4) ... Setting up libgd3:i386 (2.3.3-9) ... Setting up libclang-cpp14 (1:14.0.6-12) ... Setting up libxt6:i386 (1:1.2.1-1.1) ... Setting up libpangoft2-1.0-0:i386 (1.50.12+ds-1) ... Setting up libpangocairo-1.0-0:i386 (1.50.12+ds-1) ... Setting up libpython3-stdlib:i386 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libxmu6:i386 (2:1.1.3-3) ... Setting up libxi6:i386 (2:1.8-1+b1) ... Setting up preview-latex-style (12.2-1) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up libxaw7:i386 (2:1.0.14-1) ... Setting up doxygen (1.9.4-4) ... Setting up libgvc6 (2.42.2-7+b3) ... Setting up texlive-binaries (2022.20220321.62855-5.1+deb12u1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2022.20230122-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up dh-linktree (0.9) ... Setting up graphviz (2.42.2-7+b3) ... Setting up texlive-plain-generic (2022.20230122-4) ... Setting up texlive-latex-base (2022.20230122-3) ... Setting up texlive-latex-recommended (2022.20230122-3) ... Setting up texlive-pictures (2022.20230122-3) ... Setting up texlive-fonts-recommended (2022.20230122-3) ... Setting up texlive-latex-extra (2022.20230122-4) ... Processing triggers for libc-bin (2.36-9+deb12u3) ... Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/librostlab-1.0.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../librostlab_1.0.20-12_source.changes dpkg-buildpackage: info: source package librostlab dpkg-buildpackage: info: source version 1.0.20-12 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with linktree dh_clean debian/rules binary dh binary --with linktree dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:9: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:9: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:7: installing './compile' configure.ac:5: installing './missing' lib/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' dh_auto_configure -- --enable-doxygen-dot --enable-doxygen-pdf ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-doxygen-dot --enable-doxygen-pdf checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for doxygen... /usr/bin/doxygen checking for perl... /usr/bin/perl checking for dot... /usr/bin/dot checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for egrep... /bin/egrep checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Makefile config.status: creating lib/Doxyfile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' /usr/bin/make -C lib doxygen-doc make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' rm -rf ../doxygen-doc SRCDIR='.' PROJECT='librostlab' DOCDIR='../doxygen-doc' VERSION='1.0.20' PERL_PATH='/usr/bin/perl' HAVE_DOT='YES' DOT_PATH='/usr/bin' GENERATE_MAN='NO' GENERATE_RTF='NO' GENERATE_XML='NO' GENERATE_HTMLHELP='NO' GENERATE_CHI='NO' GENERATE_HTML='YES' GENERATE_LATEX='YES' /usr/bin/doxygen ./Doxyfile warning: Tag 'SYMBOL_CACHE_SIZE' at line 290 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 490 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 761 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 847 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'USE_INLINE_TREES' at line 1032 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1165 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 1257 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 1263 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 1428 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 1441 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 1450 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. Doxygen version used: 1.9.4 Notice: Output directory '../doxygen-doc' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/librostlab-1.0.20/lib/rostlab Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/aux_functions.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/aux_functions.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/blosum62.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/blosum62.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cwd_resource.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cwd_resource.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cxxgrp.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cxxgrp.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cxxpwd.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cxxpwd.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/euid_egid_resource.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/euid_egid_resource.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/file_lock_resource.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/file_lock_resource.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/mapAA2int.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/mapAA2int.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/readFasta.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/readFasta.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdexcept.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdexcept.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdio.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdio.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdlib.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdlib.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/umask_resource.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/umask_resource.h... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file rostlab/aux_functions.h... Generating code for file rostlab/blosum62.h... Generating code for file rostlab/cwd_resource.h... Generating code for file rostlab/cxxgrp.h... Generating code for file rostlab/cxxpwd.h... Generating code for file rostlab/euid_egid_resource.h... Generating code for file rostlab/file_lock_resource.h... Generating code for file rostlab/mapAA2int.h... Generating code for file rostlab/readFasta.h... Generating code for file rostlab/rostlab_stdexcept.h... Generating code for file rostlab/rostlab_stdio.h... Generating code for file rostlab/rostlab_stdlib.h... Generating code for file rostlab/umask_resource.h... Generating file documentation... Generating docs for file rostlab/aux_functions.h... Generating docs for file rostlab/blosum62.h... Generating docs for file rostlab/cwd_resource.h... Generating docs for file rostlab/cxxgrp.h... Generating docs for file rostlab/cxxpwd.h... Generating docs for file rostlab/euid_egid_resource.h... Generating docs for file rostlab/file_lock_resource.h... Generating docs for file rostlab/mapAA2int.h... Generating docs for file rostlab/readFasta.h... Generating docs for file rostlab/rostlab_stdexcept.h... Generating docs for file rostlab/rostlab_stdio.h... Generating docs for file rostlab/rostlab_stdlib.h... Generating docs for file rostlab/umask_resource.h... Generating page documentation... Generating group documentation... Generating class documentation... Generating concept documentation... Generating namespace index... Generating docs for namespace rostlab Generating docs for compound rostlab::cwd_resource... Generating docs for compound rostlab::cxx_group... Generating docs for compound rostlab::cxx_passwd... Generating docs for compound rostlab::error_backtracer... Generating docs for compound rostlab::euid_egid_resource... Generating docs for compound rostlab::exception... Generating docs for compound rostlab::file_lock_resource... Generating docs for nested compound rostlab::file_lock_resource::wouldblock... Generating docs for compound rostlab::gid_not_found_error... Generating docs for compound rostlab::gname_not_found_error... Generating docs for compound rostlab::runtime_error... Generating docs for compound rostlab::uid_not_found_error... Generating docs for compound rostlab::umask_resource... Generating docs for compound rostlab::uname_not_found_error... Generating docs for namespace rostlab::bio Generating docs for compound rostlab::bio::seq... Generating docs for namespace rostlab::bio::fmt Generating docs for compound rostlab::bio::fmt::fasta... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... Running dot... Generating dot graphs using 11 parallel threads... Running dot for graph 1/66 Running dot for graph 2/66 Running dot for graph 3/66 Running dot for graph 4/66 Running dot for graph 5/66 Running dot for graph 6/66 Running dot for graph 7/66 Running dot for graph 8/66 Running dot for graph 9/66 Running dot for graph 10/66 Running dot for graph 11/66 Running dot for graph 12/66 Running dot for graph 13/66 Running dot for graph 14/66 Running dot for graph 15/66 Running dot for graph 16/66 Running dot for graph 17/66 Running dot for graph 18/66 Running dot for graph 19/66 Running dot for graph 20/66 Running dot for graph 21/66 Running dot for graph 22/66 Running dot for graph 23/66 Running dot for graph 24/66 Running dot for graph 25/66 Running dot for graph 26/66 Running dot for graph 27/66 Running dot for graph 28/66 Running dot for graph 29/66 Running dot for graph 30/66 Running dot for graph 31/66 Running dot for graph 32/66 Running dot for graph 33/66 Running dot for graph 34/66 Running dot for graph 35/66 Running dot for graph 36/66 Running dot for graph 37/66 Running dot for graph 38/66 Running dot for graph 39/66 Running dot for graph 40/66 Running dot for graph 41/66 Running dot for graph 42/66 Running dot for graph 43/66 Running dot for graph 44/66 Running dot for graph 45/66 Running dot for graph 46/66 Running dot for graph 47/66 Running dot for graph 48/66 Running dot for graph 49/66 Running dot for graph 50/66 Running dot for graph 51/66 Running dot for graph 52/66 Running dot for graph 53/66 Running dot for graph 54/66 Running dot for graph 55/66 Running dot for graph 56/66 Running dot for graph 57/66 Running dot for graph 58/66 Running dot for graph 59/66 Running dot for graph 60/66 Running dot for graph 61/66 Running dot for graph 62/66 Running dot for graph 63/66 Running dot for graph 64/66 Running dot for graph 65/66 Running dot for graph 66/66 Patching output file 1/41 Patching output file 2/41 Patching output file 3/41 Patching output file 4/41 Patching output file 5/41 Patching output file 6/41 Patching output file 7/41 Patching output file 8/41 Patching output file 9/41 Patching output file 10/41 Patching output file 11/41 Patching output file 12/41 Patching output file 13/41 Patching output file 14/41 Patching output file 15/41 Patching output file 16/41 Patching output file 17/41 Patching output file 18/41 Patching output file 19/41 Patching output file 20/41 Patching output file 21/41 Patching output file 22/41 Patching output file 23/41 Patching output file 24/41 Patching output file 25/41 Patching output file 26/41 Patching output file 27/41 Patching output file 28/41 Patching output file 29/41 Patching output file 30/41 Patching output file 31/41 Patching output file 32/41 Patching output file 33/41 Patching output file 34/41 Patching output file 35/41 Patching output file 36/41 Patching output file 37/41 Patching output file 38/41 Patching output file 39/41 Patching output file 40/41 Patching output file 41/41 lookup cache used 180/65536 hits=517 misses=194 finished... cd ../doxygen-doc/latex; \ rm -f *.aux *.toc *.idx *.ind *.ilg *.log *.out; \ /usr/bin/pdflatex refman.tex; \ /usr/bin/makeindex refman.idx; \ /usr/bin/pdflatex refman.tex; \ countdown=5; \ while /bin/egrep 'Rerun (LaTeX|to get cross-references right)' \ refman.log > /dev/null 2>&1 \ && test $countdown -gt 0; do \ /usr/bin/pdflatex refman.tex; \ countdown=`expr $countdown - 1`; \ done; \ mv refman.pdf ../librostlab.pdf This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./refman.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array-2016-10-06.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/fixltx2e.sty Package fixltx2e Warning: fixltx2e is not required with releases after 2015 (fixltx2e) All fixes are now in the LaTeX kernel. 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Check if current package is valid. ) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def) (/usr/share/texlive/texmf-dist/tex/latex/caption/caption.sty (/usr/share/texlive/texmf-dist/tex/latex/caption/caption3.sty) (/usr/share/texlive/texmf-dist/tex/latex/caption/ltcaption.sty)) (/usr/share/texlive/texmf-dist/tex/latex/etoc/etoc.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file refman.aux. (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex No file refman.toc. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] Chapter 1. (./namespaces.tex (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) (/usr/share/texlive/texmf-dist/tex/latex/wasysym/uwasy.fd) LaTeX Warning: Reference `namespacerostlab' on page 1 undefined on input line 3 . LaTeX Warning: Reference `namespacerostlab_1_1bio' on page 1 undefined on input line 4. LaTeX Warning: Reference `namespacerostlab_1_1bio_1_1fmt' on page 1 undefined o n input line 5. ) [1] [2] Chapter 2. (./hierarchy.tex LaTeX Warning: Reference `classrostlab_1_1cwd__resource' on page 3 undefined on input line 3. LaTeX Warning: Reference `structrostlab_1_1cxx__group' on page 3 undefined on i nput line 4. LaTeX Warning: Reference `structrostlab_1_1cxx__passwd' on page 3 undefined on input line 5. LaTeX Warning: Reference `classrostlab_1_1error__backtracer' on page 3 undefine d on input line 6. LaTeX Warning: Reference `classrostlab_1_1exception' on page 3 undefined on inp ut line 8. 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LaTeX Warning: Reference `classrostlab_1_1file__lock__resource_1_1wouldblock' o n page 5 undefined on input line 18. ) [5] [6] Chapter 4. (./files.tex LaTeX Warning: Reference `aux__functions_8h' on page 7 undefined on input line 3. LaTeX Warning: Reference `blosum62_8h' on page 7 undefined on input line 4. LaTeX Warning: Reference `cwd__resource_8h' on page 7 undefined on input line 5 . LaTeX Warning: Reference `cxxgrp_8h' on page 7 undefined on input line 6. LaTeX Warning: Reference `cxxpwd_8h' on page 7 undefined on input line 7. LaTeX Warning: Reference `euid__egid__resource_8h' on page 7 undefined on input line 8. LaTeX Warning: Reference `file__lock__resource_8h' on page 7 undefined on input line 9. LaTeX Warning: Reference `mapAA2int_8h' on page 7 undefined on input line 10. LaTeX Warning: Reference `readFasta_8h' on page 7 undefined on input line 11. LaTeX Warning: Reference `rostlab__stdexcept_8h' on page 7 undefined on input l ine 12. LaTeX Warning: Reference `rostlab__stdio_8h' on page 7 undefined on input line 13. LaTeX Warning: Reference `rostlab__stdlib_8h' on page 7 undefined on input line 14. LaTeX Warning: Reference `umask__resource_8h' on page 7 undefined on input line 15. ) [7] [8] Chapter 5. (./namespacerostlab.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [9] [10] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [11] [12] [13] [14] [15] [16] [17]) (./namespacerostlab_1_1bio.tex) (./namespacerostlab_1_1bio_1_1fmt.tex) [18] Chapter 6. (./classrostlab_1_1cwd__resource.tex [19]) (./structrostlab_1_1cxx__group.tex [20] [21]) (./structrostlab_1_1cxx__passwd.tex [22] [23]) (./classrostlab_1_1error__backtracer.tex [24] <./classrostlab_1_1error__backtra cer__inherit__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1error__backtracer__in herit__graph.pdf): PDF inclusion: multiple pdfs with page group included in a s ingle page > [25]) (./classrostlab_1_1euid__egid__resource.tex [26]) (./classrostlab_1_1exception.tex <./classrostlab_1_1exception__inherit__graph.p df pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1exception__inherit__g raph.pdf): PDF inclusion: multiple pdfs with page group included in a single pa ge > <./classrostlab_1_1exception__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1exception__coll__grap h.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [27]) (./classrostlab_1_1bio_1_1fmt_1_1fasta.tex) (./classrostlab_1_1file__lock__resource.tex [28] [29] [30]) (./classrostlab_1_1gid__not__found__error.tex <./classrostlab_1_1gid__not__foun d__error__inherit__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gid__not__found__erro r__inherit__graph.pdf): PDF inclusion: multiple pdfs with page group included i n a single page > [31] <./classrostlab_1_1gid__not__found__error__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gid__not__found__erro r__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [32]) (./classrostlab_1_1gname__not__found__error.tex <./classrostlab_1_1gnam e__not__found__error__inherit__graph.pdf> <./classrostlab_1_1gname__not__found_ _error__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gname__not__found__er ror__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [33]) (./classrostlab_1_1runtime__error.tex <./classrostlab_1_1runtime__error __inherit__graph.pdf> [34] <./classrostlab_1_1runtime__error__coll__graph.pdf> [35]) (./classrostlab_1_1bio_1_1seq.tex [36]) (./classrostlab_1_1uid__not__found__error.tex <./classrostlab_1_1uid__not__foun d__error__inherit__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uid__not__found__erro r__inherit__graph.pdf): PDF inclusion: multiple pdfs with page group included i n a single page > <./classrostlab_1_1uid__not__found__error__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uid__not__found__erro r__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [37] [38]) (./classrostlab_1_1umask__resource.tex) (./classrostlab_1_1uname__not__found__error.tex <./classrostlab_1_1uname__not__ found__error__inherit__graph.pdf> [39] <./classrostlab_1_1uname__not__found__er ror__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uname__not__found__er ror__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [40]) (./classrostlab_1_1file__lock__resource_1_1wouldblock.tex <./classrostl ab_1_1file__lock__resource_1_1wouldblock__inherit__graph.pdf> <./classrostlab_1 _1file__lock__resource_1_1wouldblock__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1file__lock__resource_ 1_1wouldblock__coll__graph.pdf): PDF inclusion: multiple pdfs with page group i ncluded in a single page > [41]) [42] Chapter 7. (./aux__functions_8h.tex <./aux__functions_8h__incl.pdf> [43]) (./aux__functions_8h_source.tex [44] [45]) (./blosum62_8h.tex [46]) (./blosum62_8h_source.tex) (./cwd__resource_8h.tex <./cwd__resource_8h__incl.pd f pdfTeX warning: /usr/bin/pdflatex (file ./cwd__resource_8h__incl.pdf): PDF incl usion: multiple pdfs with page group included in a single page >) (./cwd__resource_8h_source.tex [47] [48]) (./cxxgrp_8h.tex <./cxxgrp_8h__inc l.pdf pdfTeX warning: /usr/bin/pdflatex (file ./cxxgrp_8h__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page >) (./cxxgrp_8h_source.tex [49] [50]) (./cxxpwd_8h.tex <./cxxpwd_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./cxxpwd_8h__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [51]) (./cxxpwd_8h_source.tex [52] [53]) (./euid__egid__resource_8h.tex <./eu id__egid__resource_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./euid__egid__resource_8h__incl.pdf): P DF inclusion: multiple pdfs with page group included in a single page >) (./euid__egid__resource_8h_source.tex [54] [55]) (./file__lock__resource_8h.tex <./file__lock__resource_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./file__lock__resource_8h__incl.pdf): P DF inclusion: multiple pdfs with page group included in a single page >) (./file__lock__resource_8h_source.tex [56] [57]) (./mapAA2int_8h.tex <./mapA A2int_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./mapAA2int_8h__incl.pdf): PDF inclusio n: multiple pdfs with page group included in a single page >) (./mapAA2int_8h_source.tex [58] [59]) (./readFasta_8h.tex <./readFasta_8h__i ncl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./readFasta_8h__incl.pdf): PDF inclusio n: multiple pdfs with page group included in a single page >) (./readFasta_8h_source.tex [60] [61]) (./rostlab__stdexcept_8h.tex <./rostla b__stdexcept_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./rostlab__stdexcept_8h__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > <./rostlab__stdexcept_8h__dep__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./rostlab__stdexcept_8h__dep__incl.pdf) : PDF inclusion: multiple pdfs with page group included in a single page > [62]) (./rostlab__stdexcept_8h_source.tex [63]) (./rostlab__stdio_8h.tex <./r ostlab__stdio_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./rostlab__stdio_8h__incl.pdf): PDF inc lusion: multiple pdfs with page group included in a single page >) (./rostlab__stdio_8h_source.tex [64]) (./rostlab__stdlib_8h.tex <./rostlab__ stdlib_8h__incl.pdf> [65]) (./rostlab__stdlib_8h_source.tex [66] [67]) (./umask__resource_8h.tex <./umask__resource_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./umask__resource_8h__incl.pdf): PDF in clusion: multiple pdfs with page group included in a single page >) (./umask__resource_8h_source.tex [68]) [69] [70] No file refman.ind. (./refman.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `refman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ){/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on refman.pdf (72 pages, 509400 bytes). Transcript written on refman.log. This is makeindex, version 2.16 [TeX Live 2022] (kpathsea + Thai support). Scanning input file refman.idx....done (213 entries accepted, 0 rejected). Sorting entries.....done (1698 comparisons). Generating output file refman.ind....done (271 lines written, 0 warnings). Output written in refman.ind. Transcript written in refman.ilg. 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(./namespaces.tex) [1] [2] Chapter 2. (./hierarchy.tex) [3] [4] Chapter 3. (./annotated.tex) [5] [6] Chapter 4. (./files.tex) [7] [8] Chapter 5. (./namespacerostlab.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [9] [10] [11] [12] [13] [14] [15] [16] [17]) (./namespacerostlab_1_1bio.tex) (./namespacerostlab_1_1bio_1_1fmt.tex) [18] Chapter 6. (./classrostlab_1_1cwd__resource.tex [19]) (./structrostlab_1_1cxx__group.tex [20] [21]) (./structrostlab_1_1cxx__passwd.tex [22] [23]) (./classrostlab_1_1error__backtracer.tex [24] <./classrostlab_1_1error__backtra cer__inherit__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1error__backtracer__in herit__graph.pdf): PDF inclusion: multiple pdfs with page group included in a s ingle page > [25]) (./classrostlab_1_1euid__egid__resource.tex [26]) (./classrostlab_1_1exception.tex <./classrostlab_1_1exception__inherit__graph.p df pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1exception__inherit__g raph.pdf): PDF inclusion: multiple pdfs with page group included in a single pa ge > <./classrostlab_1_1exception__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1exception__coll__grap h.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [27]) (./classrostlab_1_1bio_1_1fmt_1_1fasta.tex) (./classrostlab_1_1file__lock__resource.tex [28] [29] [30]) (./classrostlab_1_1gid__not__found__error.tex <./classrostlab_1_1gid__not__foun d__error__inherit__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gid__not__found__erro r__inherit__graph.pdf): PDF inclusion: multiple pdfs with page group included i n a single page > [31] <./classrostlab_1_1gid__not__found__error__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gid__not__found__erro r__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [32]) (./classrostlab_1_1gname__not__found__error.tex <./classrostlab_1_1gnam e__not__found__error__inherit__graph.pdf> <./classrostlab_1_1gname__not__found_ _error__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gname__not__found__er ror__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [33]) (./classrostlab_1_1runtime__error.tex <./classrostlab_1_1runtime__error __inherit__graph.pdf> [34] <./classrostlab_1_1runtime__error__coll__graph.pdf> [35]) (./classrostlab_1_1bio_1_1seq.tex [36]) (./classrostlab_1_1uid__not__found__error.tex <./classrostlab_1_1uid__not__foun d__error__inherit__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uid__not__found__erro r__inherit__graph.pdf): PDF inclusion: multiple pdfs with page group included i n a single page > <./classrostlab_1_1uid__not__found__error__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uid__not__found__erro r__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [37] [38]) (./classrostlab_1_1umask__resource.tex) (./classrostlab_1_1uname__not__found__error.tex <./classrostlab_1_1uname__not__ found__error__inherit__graph.pdf> [39] <./classrostlab_1_1uname__not__found__er ror__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uname__not__found__er ror__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [40]) (./classrostlab_1_1file__lock__resource_1_1wouldblock.tex <./classrostl ab_1_1file__lock__resource_1_1wouldblock__inherit__graph.pdf> <./classrostlab_1 _1file__lock__resource_1_1wouldblock__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1file__lock__resource_ 1_1wouldblock__coll__graph.pdf): PDF inclusion: multiple pdfs with page group i ncluded in a single page > [41]) [42] Chapter 7. (./aux__functions_8h.tex <./aux__functions_8h__incl.pdf> [43]) (./aux__functions_8h_source.tex [44] [45]) (./blosum62_8h.tex [46]) (./blosum62_8h_source.tex) (./cwd__resource_8h.tex <./cwd__resource_8h__incl.pd f pdfTeX warning: /usr/bin/pdflatex (file ./cwd__resource_8h__incl.pdf): PDF incl usion: multiple pdfs with page group included in a single page >) (./cwd__resource_8h_source.tex [47] [48]) (./cxxgrp_8h.tex <./cxxgrp_8h__inc l.pdf pdfTeX warning: /usr/bin/pdflatex (file ./cxxgrp_8h__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page >) (./cxxgrp_8h_source.tex [49] [50]) (./cxxpwd_8h.tex <./cxxpwd_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./cxxpwd_8h__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [51]) (./cxxpwd_8h_source.tex [52] [53]) (./euid__egid__resource_8h.tex <./eu id__egid__resource_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./euid__egid__resource_8h__incl.pdf): P DF inclusion: multiple pdfs with page group included in a single page >) (./euid__egid__resource_8h_source.tex [54] [55]) (./file__lock__resource_8h.tex <./file__lock__resource_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./file__lock__resource_8h__incl.pdf): P DF inclusion: multiple pdfs with page group included in a single page >) (./file__lock__resource_8h_source.tex [56] [57]) (./mapAA2int_8h.tex <./mapA A2int_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./mapAA2int_8h__incl.pdf): PDF inclusio n: multiple pdfs with page group included in a single page >) (./mapAA2int_8h_source.tex [58] [59]) (./readFasta_8h.tex <./readFasta_8h__i ncl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./readFasta_8h__incl.pdf): PDF inclusio n: multiple pdfs with page group included in a single page >) (./readFasta_8h_source.tex [60] [61]) (./rostlab__stdexcept_8h.tex <./rostla b__stdexcept_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./rostlab__stdexcept_8h__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > <./rostlab__stdexcept_8h__dep__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./rostlab__stdexcept_8h__dep__incl.pdf) : PDF inclusion: multiple pdfs with page group included in a single page > [62]) (./rostlab__stdexcept_8h_source.tex [63]) (./rostlab__stdio_8h.tex <./r ostlab__stdio_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./rostlab__stdio_8h__incl.pdf): PDF inc lusion: multiple pdfs with page group included in a single page >) (./rostlab__stdio_8h_source.tex [64]) (./rostlab__stdlib_8h.tex <./rostlab__ stdlib_8h__incl.pdf> [65]) (./rostlab__stdlib_8h_source.tex [66] [67]) (./umask__resource_8h.tex <./umask__resource_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./umask__resource_8h__incl.pdf): PDF in clusion: multiple pdfs with page group included in a single page >) (./umask__resource_8h_source.tex [68]) [69] [70] (./refman.ind [71] [72] [73]) (./refman.aux) Package rerunfilecheck Warning: File `refman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ){/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on refman.pdf (81 pages, 543182 bytes). Transcript written on refman.log. make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' dh_auto_build -Nlibrostlab-doc make -j8 make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' make all-recursive make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20' Making all in lib make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' make all-am make[4]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/librostlab-1.0.20=. -fstack-protector-strong -Wformat -Werror=format-security -c -o librostlab_la-blosum62.lo `test -f 'blosum62.cpp' || echo './'`blosum62.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/librostlab-1.0.20=. -fstack-protector-strong -Wformat -Werror=format-security -c blosum62.cpp -fPIC -DPIC -o .libs/librostlab_la-blosum62.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/librostlab-1.0.20=. -fstack-protector-strong -Wformat -Werror=format-security -c blosum62.cpp -o librostlab_la-blosum62.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/librostlab-1.0.20=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 3:0:0 -Wall -Wl,-z,relro -Wl,-z,now -o librostlab.la -rpath /usr/lib/i386-linux-gnu librostlab_la-blosum62.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/12/crtbeginS.o .libs/librostlab_la-blosum62.o -L/usr/lib/gcc/i686-linux-gnu/12 -L/usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/12/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/12/crtendS.o /usr/lib/gcc/i686-linux-gnu/12/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,librostlab.so.3 -o .libs/librostlab.so.3.0.0 libtool: link: (cd ".libs" && rm -f "librostlab.so.3" && ln -s "librostlab.so.3.0.0" "librostlab.so.3") libtool: link: (cd ".libs" && rm -f "librostlab.so" && ln -s "librostlab.so.3.0.0" "librostlab.so") libtool: link: ar cr .libs/librostlab.a librostlab_la-blosum62.o libtool: link: ranlib .libs/librostlab.a libtool: link: ( cd ".libs" && rm -f "librostlab.la" && ln -s "../librostlab.la" "librostlab.la" ) make[4]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20' make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' dh_auto_test make -j8 check "TESTSUITEFLAGS=-j8 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' Making check in lib make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' make check-am make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20' make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/librostlab-1.0.20/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' Making install in lib make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' make install-am make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' make[4]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' /bin/mkdir -p '/build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/i386-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c librostlab.la '/build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/librostlab.so.3.0.0 /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/i386-linux-gnu/librostlab.so.3.0.0 libtool: install: (cd /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f librostlab.so.3.0.0 librostlab.so.3 || { rm -f librostlab.so.3 && ln -s librostlab.so.3.0.0 librostlab.so.3; }; }) libtool: install: (cd /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f librostlab.so.3.0.0 librostlab.so || { rm -f librostlab.so && ln -s librostlab.so.3.0.0 librostlab.so; }; }) libtool: install: /usr/bin/install -c .libs/librostlab.lai /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/i386-linux-gnu/librostlab.la libtool: install: /usr/bin/install -c .libs/librostlab.a /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/i386-linux-gnu/librostlab.a libtool: install: chmod 644 /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/i386-linux-gnu/librostlab.a libtool: install: ranlib /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/i386-linux-gnu/librostlab.a libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' /bin/mkdir -p '/build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/include/rostlab' /usr/bin/install -c -m 644 rostlab/aux_functions.h rostlab/blosum62.h rostlab/cwd_resource.h rostlab/cxxgrp.h rostlab/cxxpwd.h rostlab/euid_egid_resource.h rostlab/file_lock_resource.h rostlab/mapAA2int.h rostlab/readFasta.h rostlab/rostlab_stdexcept.h rostlab/rostlab_stdio.h rostlab/rostlab_stdlib.h rostlab/umask_resource.h '/build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/include/rostlab' make[4]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20' make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' dh_install d-shlibmove --commit \ --multiarch \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/librostlab3-dev/usr/lib/i386-linux-gnu install -d -m 755 debian/librostlab3/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/librostlab.a debian/librostlab3-dev/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/librostlab.so debian/librostlab3-dev/usr/lib/i386-linux-gnu mv /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/i386-linux-gnu/librostlab.so.3 debian/librostlab3/usr/lib/i386-linux-gnu mv /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/i386-linux-gnu/librostlab.so.3.0.0 debian/librostlab3/usr/lib/i386-linux-gnu PKGDEV=librostlab3-dev PKGSHL=librostlab3 install -d -m 755 debian/librostlab3-dev/usr/include mv debian/tmp/usr/include/rostlab debian/librostlab3-dev/usr/include find debian -name "lib*.la" -delete make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' debian/rules override_dh_installdocs make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' dh_installdocs dh_installdocs: warning: Cannot auto-detect main package for librostlab-doc. If the default is wrong, please use --doc-main-package find debian -name "*_*.md5" -delete make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' dh_installchangelogs dh_installexamples dh_perl dh_link dh_linktree dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' dh_compress -Xlibrostlab.tag make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' dh_fixperms debian/rules override_dh_missing make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' dh_missing --list-missing make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package librostlab-doc: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package librostlab-doc: substitution variable ${js:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package librostlab3: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package librostlab3: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'librostlab3-dbgsym' in '../librostlab3-dbgsym_1.0.20-12_i386.deb'. dpkg-deb: building package 'librostlab3' in '../librostlab3_1.0.20-12_i386.deb'. dpkg-deb: building package 'librostlab-doc' in '../librostlab-doc_1.0.20-12_all.deb'. dpkg-deb: building package 'librostlab3-dev' in '../librostlab3-dev_1.0.20-12_i386.deb'. dpkg-genbuildinfo --build=binary -O../librostlab_1.0.20-12_i386.buildinfo dpkg-genchanges --build=binary -O../librostlab_1.0.20-12_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/12499 and its subdirectories I: Current time: Thu Jan 18 04:11:19 -12 2024 I: pbuilder-time-stamp: 1705594279