I: pbuilder: network access will be disabled during build I: Current time: Tue May 2 21:24:40 +14 2023 I: pbuilder-time-stamp: 1683012280 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-mofa_1.6.1+dfsg-10.dsc] I: copying [./r-bioc-mofa_1.6.1+dfsg.orig.tar.xz] I: copying [./r-bioc-mofa_1.6.1+dfsg-10.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Feb 8 09:29:04 2023 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-mofa_1.6.1+dfsg-10.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-mofa in r-bioc-mofa-1.6.1+dfsg dpkg-source: info: unpacking r-bioc-mofa_1.6.1+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-mofa_1.6.1+dfsg-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying r-api-bioc.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/9066/tmp/hooks/D01_modify_environment starting debug: Running on ff64a. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 May 2 21:25 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/9066/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/9066/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.2.15(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6' DIRSTACK=() DISTRIBUTION=bookworm EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=c50a4e7a4b2f43d5bee833874b089dae LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=9066 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Nnwb2Cz6/pbuilderrc_VZgg --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Nnwb2Cz6/b2 --logfile b2/build.log --extrapackages usrmerge r-bioc-mofa_1.6.1+dfsg-10.dsc' SUDO_GID=114 SUDO_UID=109 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:3142/ I: uname -a Linux i-capture-the-hostname 5.10.0-22-arm64 #1 SMP Debian 5.10.178-3 (2023-04-22) aarch64 GNU/Linux I: ls -l /bin total 5072 -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 21 2022 cat -rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 21 2022 chown -rwxr-xr-x 1 root root 133532 Sep 21 2022 cp -rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash -rwxr-xr-x 1 root root 133220 Sep 21 2022 date -rwxr-xr-x 1 root root 67732 Sep 21 2022 dd -rwxr-xr-x 1 root root 68104 Sep 21 2022 df -rwxr-xr-x 1 root root 133632 Sep 21 2022 dir -rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 21 2022 echo -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep -rwxr-xr-x 1 root root 67548 Sep 21 2022 false -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep -rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt -rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname -rwxr-xr-x 1 root root 67720 Sep 21 2022 ln -rwxr-xr-x 1 root root 35132 Mar 23 23:51 login -rwxr-xr-x 1 root root 133632 Sep 21 2022 ls -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk -rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 23 23:02 more -rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount -rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint -rwxr-xr-x 1 root root 133532 Sep 21 2022 mv lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 21 2022 rm -rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir -rwxr-xr-x 1 root root 67400 Nov 3 06:31 run-parts -rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed lrwxrwxrwx 1 root root 9 May 2 21:25 sh -> /bin/bash -rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 21 2022 stty -rwsr-xr-x 1 root root 50800 Mar 23 23:02 su -rwxr-xr-x 1 root root 67584 Sep 21 2022 sync -rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar -rwxr-xr-x 1 root root 67144 Nov 3 06:31 tempfile -rwxr-xr-x 1 root root 133224 Sep 21 2022 touch -rwxr-xr-x 1 root root 67548 Sep 21 2022 true -rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount -rwxr-xr-x 1 root root 67572 Sep 21 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/9066/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, xvfb, r-bioc-rhdf5, r-cran-dplyr, r-cran-reshape2, r-cran-pheatmap, r-cran-corrplot, r-cran-ggplot2, r-cran-ggbeeswarm, r-cran-scales, r-cran-ggally, r-cran-rcolorbrewer, r-cran-cowplot, r-cran-ggrepel, r-bioc-biobase, r-cran-doparallel, r-cran-foreach, r-cran-reticulate, r-bioc-multiassayexperiment, python3-all, dh-python, python3-pandas, python3-setuptools, python3-scipy, python3-numpy, python3-sklearn, python3-h5py dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on xvfb; however: Package xvfb is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rhdf5; however: Package r-bioc-rhdf5 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dplyr; however: Package r-cran-dplyr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-reshape2; however: Package r-cran-reshape2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-pheatmap; however: Package r-cran-pheatmap is not installed. pbuilder-satisfydepends-dummy depends on r-cran-corrplot; however: Package r-cran-corrplot is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggbeeswarm; however: Package r-cran-ggbeeswarm is not installed. pbuilder-satisfydepends-dummy depends on r-cran-scales; however: Package r-cran-scales is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggally; however: Package r-cran-ggally is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcolorbrewer; however: Package r-cran-rcolorbrewer is not installed. pbuilder-satisfydepends-dummy depends on r-cran-cowplot; however: Package r-cran-cowplot is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggrepel; however: Package r-cran-ggrepel is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase; however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-cran-doparallel; however: Package r-cran-doparallel is not installed. pbuilder-satisfydepends-dummy depends on r-cran-foreach; however: Package r-cran-foreach is not installed. pbuilder-satisfydepends-dummy depends on r-cran-reticulate; however: Package r-cran-reticulate is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-multiassayexperiment; however: Package r-bioc-multiassayexperiment is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-sklearn; however: Package python3-sklearn is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libblosc1{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-openssl-dev{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libelf1{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran-12-dev{a} libgfortran5{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} liblapack-dev{a} liblapack3{a} liblbfgsb0{a} libldap-2.5-0{a} liblerc4{a} libllvm15{a} liblwp-mediatypes-perl{a} liblzf1{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre16-3{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpcre3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16{a} libproc2-0{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline-dev{a} libreadline8{a} libregexp-ipv6-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsm6{a} libsnappy1v5{a} libssh2-1{a} libssl-dev{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libsz2{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunwind8{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxfont2{a} libxft2{a} libxkbfile1{a} libxml2{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxss1{a} libxt6{a} libxxf86vm1{a} libz3-4{a} littler{a} m4{a} man-db{a} media-types{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-dateutil{a} python3-decorator{a} python3-distutils{a} python3-h5py{a} python3-h5py-serial{a} python3-joblib{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-sklearn{a} python3-sklearn-lib{a} python3-threadpoolctl{a} python3-tz{a} python3.11{a} python3.11-minimal{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocbaseutils{a} r-bioc-biocgenerics{a} r-bioc-delayedarray{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicranges{a} r-bioc-iranges{a} r-bioc-matrixgenerics{a} r-bioc-multiassayexperiment{a} r-bioc-rhdf5{a} r-bioc-rhdf5filters{a} r-bioc-rhdf5lib{a} r-bioc-s4vectors{a} r-bioc-summarizedexperiment{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-beeswarm{a} r-cran-bitops{a} r-cran-cli{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-corrplot{a} r-cran-cowplot{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-doparallel{a} r-cran-dplyr{a} r-cran-ellipsis{a} r-cran-fansi{a} r-cran-farver{a} r-cran-forcats{a} r-cran-foreach{a} r-cran-generics{a} r-cran-ggally{a} r-cran-ggbeeswarm{a} r-cran-ggplot2{a} r-cran-ggrepel{a} r-cran-glue{a} r-cran-gtable{a} r-cran-here{a} r-cran-hms{a} r-cran-isoband{a} r-cran-iterators{a} r-cran-jsonlite{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-mgcv{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-pheatmap{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plyr{a} r-cran-png{a} r-cran-prettyunits{a} r-cran-progress{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcpptoml{a} r-cran-rcurl{a} r-cran-reshape{a} r-cran-reshape2{a} r-cran-reticulate{a} r-cran-rlang{a} r-cran-rprojroot{a} r-cran-scales{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-vipor{a} r-cran-viridislite{a} r-cran-withr{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} x11-xkb-utils{a} xauth{a} xdg-utils{a} xkb-data{a} xserver-common{a} xvfb{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx psmisc publicsuffix python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-nose python3-numexpr python3-odf python3-openpyxl python3-pil python3-psutil python3-pytest python3-simplejson python3-tables r-bioc-biocstyle r-cran-abind r-cran-bench r-cran-bit64 r-cran-brio r-cran-broom r-cran-callr r-cran-caret r-cran-covr r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-devtools r-cran-domc r-cran-formattable r-cran-gridextra r-cran-hexbin r-cran-hmisc r-cran-htmltools r-cran-htmlwidgets r-cran-httr r-cran-interp r-cran-knitr r-cran-lobstr r-cran-lubridate r-cran-mapproj r-cran-maps r-cran-maptools r-cran-mlbench r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-network r-cran-pkgload r-cran-quantreg r-cran-ragg r-cran-readr r-cran-rmarkdown r-cran-rmysql r-cran-rpart r-cran-rpostgresql r-cran-rsqlite r-cran-runit r-cran-sf r-cran-sna r-cran-sp r-cran-survival r-cran-svglite r-cran-testthat r-cran-vdiffr r-cran-waldo r-cran-xml2 r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs xfonts-base 0 packages upgraded, 351 newly installed, 0 to remove and 0 not upgraded. Need to get 255 MB of archives. After unpacking 709 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf libpython3.11-minimal armhf 3.11.2-6 [798 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf libexpat1 armhf 2.5.0-1 [79.9 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf python3.11-minimal armhf 3.11.2-6 [1714 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf python3-minimal armhf 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf libreadline8 armhf 8.2-1.3 [144 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf libpython3.11-stdlib armhf 3.11.2-6 [1678 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf python3.11 armhf 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf libpython3-stdlib armhf 3.11.2-1+b1 [9296 B] Get: 11 http://deb.debian.org/debian bookworm/main armhf python3 armhf 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf libproc2-0 armhf 2:4.0.2-3 [54.2 kB] Get: 13 http://deb.debian.org/debian bookworm/main armhf procps armhf 2:4.0.2-3 [695 kB] Get: 14 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf openssl armhf 3.0.8-1 [1373 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf ca-certificates all 20230311 [153 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 21 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 22 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 23 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 24 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 26 http://deb.debian.org/debian bookworm/main armhf ucf all 3.0043+nmu1 [55.2 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 28 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf dctrl-tools armhf 2.24-3 [96.0 kB] Get: 33 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 34 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 35 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 36 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 37 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 38 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 39 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 40 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 41 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 42 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 43 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB] Get: 44 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 45 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 46 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 47 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 48 http://deb.debian.org/debian bookworm/main armhf python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 49 http://deb.debian.org/debian bookworm/main armhf python3-distutils all 3.11.2-2 [131 kB] Get: 50 http://deb.debian.org/debian bookworm/main armhf dh-python all 5.20230130 [104 kB] Get: 51 http://deb.debian.org/debian bookworm/main armhf zip armhf 3.0-13 [218 kB] Get: 52 http://deb.debian.org/debian bookworm/main armhf unzip armhf 6.0-28 [152 kB] Get: 53 http://deb.debian.org/debian bookworm/main armhf libpaper1 armhf 1.1.29 [11.9 kB] Get: 54 http://deb.debian.org/debian bookworm/main armhf libpaper-utils armhf 1.1.29 [8400 B] Get: 55 http://deb.debian.org/debian bookworm/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 56 http://deb.debian.org/debian bookworm/main armhf libblas3 armhf 3.11.0-2 [105 kB] Get: 57 http://deb.debian.org/debian bookworm/main armhf libbrotli1 armhf 1.0.9-2+b6 [271 kB] Get: 58 http://deb.debian.org/debian bookworm/main armhf libpng16-16 armhf 1.6.39-2 [260 kB] Get: 59 http://deb.debian.org/debian bookworm/main armhf libfreetype6 armhf 2.12.1+dfsg-5 [332 kB] Get: 60 http://deb.debian.org/debian bookworm/main armhf fonts-dejavu-core all 2.37-6 [1068 kB] Get: 61 http://deb.debian.org/debian bookworm/main armhf fontconfig-config armhf 2.14.1-4 [315 kB] Get: 62 http://deb.debian.org/debian bookworm/main armhf libfontconfig1 armhf 2.14.1-4 [368 kB] Get: 63 http://deb.debian.org/debian bookworm/main armhf libpixman-1-0 armhf 0.42.2-1 [465 kB] Get: 64 http://deb.debian.org/debian bookworm/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 65 http://deb.debian.org/debian bookworm/main armhf libbsd0 armhf 0.11.7-2 [113 kB] Get: 66 http://deb.debian.org/debian bookworm/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 67 http://deb.debian.org/debian bookworm/main armhf libxcb1 armhf 1.15-1 [140 kB] Get: 68 http://deb.debian.org/debian bookworm/main armhf libx11-data all 2:1.8.4-2 [292 kB] Get: 69 http://deb.debian.org/debian bookworm/main armhf libx11-6 armhf 2:1.8.4-2 [695 kB] Get: 70 http://deb.debian.org/debian bookworm/main armhf libxcb-render0 armhf 1.15-1 [114 kB] Get: 71 http://deb.debian.org/debian bookworm/main armhf libxcb-shm0 armhf 1.15-1 [106 kB] Get: 72 http://deb.debian.org/debian bookworm/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 73 http://deb.debian.org/debian bookworm/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.1 kB] Get: 74 http://deb.debian.org/debian bookworm/main armhf libcairo2 armhf 1.16.0-7 [493 kB] Get: 75 http://deb.debian.org/debian bookworm/main armhf libsasl2-modules-db armhf 2.1.28+dfsg-10 [19.0 kB] Get: 76 http://deb.debian.org/debian bookworm/main armhf libsasl2-2 armhf 2.1.28+dfsg-10 [52.3 kB] Get: 77 http://deb.debian.org/debian bookworm/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5 [158 kB] Get: 78 http://deb.debian.org/debian bookworm/main armhf libnghttp2-14 armhf 1.52.0-1 [60.8 kB] Get: 79 http://deb.debian.org/debian bookworm/main armhf libpsl5 armhf 0.21.2-1 [57.5 kB] Get: 80 http://deb.debian.org/debian bookworm/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 81 http://deb.debian.org/debian bookworm/main armhf libssh2-1 armhf 1.10.0-3+b1 [163 kB] Get: 82 http://deb.debian.org/debian bookworm/main armhf libcurl4 armhf 7.88.1-9 [347 kB] Get: 83 http://deb.debian.org/debian bookworm/main armhf libglib2.0-0 armhf 2.74.6-2 [1227 kB] Get: 84 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB] Get: 85 http://deb.debian.org/debian bookworm/main armhf libgfortran5 armhf 12.2.0-14 [246 kB] Get: 86 http://deb.debian.org/debian bookworm/main armhf liblapack3 armhf 3.11.0-2 [1724 kB] Get: 87 http://deb.debian.org/debian bookworm/main armhf fontconfig armhf 2.14.1-4 [448 kB] Get: 88 http://deb.debian.org/debian bookworm/main armhf libfribidi0 armhf 1.0.8-2.1 [63.1 kB] Get: 89 http://deb.debian.org/debian bookworm/main armhf libgraphite2-3 armhf 1.3.14-1 [70.5 kB] Get: 90 http://deb.debian.org/debian bookworm/main armhf libharfbuzz0b armhf 6.0.0+dfsg-3 [1893 kB] Get: 91 http://deb.debian.org/debian bookworm/main armhf libthai-data all 0.1.29-1 [176 kB] Get: 92 http://deb.debian.org/debian bookworm/main armhf libdatrie1 armhf 0.2.13-2+b1 [39.9 kB] Get: 93 http://deb.debian.org/debian bookworm/main armhf libthai0 armhf 0.1.29-1 [54.3 kB] Get: 94 http://deb.debian.org/debian bookworm/main armhf libpango-1.0-0 armhf 1.50.12+ds-1 [188 kB] Get: 95 http://deb.debian.org/debian bookworm/main armhf libpangoft2-1.0-0 armhf 1.50.12+ds-1 [40.9 kB] Get: 96 http://deb.debian.org/debian bookworm/main armhf libpangocairo-1.0-0 armhf 1.50.12+ds-1 [30.3 kB] Get: 97 http://deb.debian.org/debian bookworm/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [922 kB] Get: 98 http://deb.debian.org/debian bookworm/main armhf libdeflate0 armhf 1.14-1 [52.2 kB] Get: 99 http://deb.debian.org/debian bookworm/main armhf libjbig0 armhf 2.1-6.1 [27.1 kB] Get: 100 http://deb.debian.org/debian bookworm/main armhf liblerc4 armhf 4.0.0+ds-2 [137 kB] Get: 101 http://deb.debian.org/debian bookworm/main armhf libwebp7 armhf 1.2.4-0.1 [242 kB] Get: 102 http://deb.debian.org/debian bookworm/main armhf libtiff6 armhf 4.5.0-5 [295 kB] Get: 103 http://deb.debian.org/debian bookworm/main armhf libxft2 armhf 2.3.6-1 [53.8 kB] Get: 104 http://deb.debian.org/debian bookworm/main armhf x11-common all 1:7.7+23 [252 kB] Get: 105 http://deb.debian.org/debian bookworm/main armhf libxss1 armhf 1:1.2.3-1 [17.2 kB] Get: 106 http://deb.debian.org/debian bookworm/main armhf libtk8.6 armhf 8.6.13-2 [689 kB] Get: 107 http://deb.debian.org/debian bookworm/main armhf libice6 armhf 2:1.0.10-1 [51.9 kB] Get: 108 http://deb.debian.org/debian bookworm/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get: 109 http://deb.debian.org/debian bookworm/main armhf libxt6 armhf 1:1.2.1-1.1 [157 kB] Get: 110 http://deb.debian.org/debian bookworm/main armhf r-base-core armhf 4.2.2.20221110-2 [25.6 MB] Get: 111 http://deb.debian.org/debian bookworm/main armhf libgfortran-12-dev armhf 12.2.0-14 [298 kB] Get: 112 http://deb.debian.org/debian bookworm/main armhf gfortran-12 armhf 12.2.0-14 [7633 kB] Get: 113 http://deb.debian.org/debian bookworm/main armhf gfortran armhf 4:12.2.0-3 [1424 B] Get: 114 http://deb.debian.org/debian bookworm/main armhf libblas-dev armhf 3.11.0-2 [115 kB] Get: 115 http://deb.debian.org/debian bookworm/main armhf liblapack-dev armhf 3.11.0-2 [1798 kB] Get: 116 http://deb.debian.org/debian bookworm/main armhf libncurses6 armhf 6.4-2 [81.0 kB] Get: 117 http://deb.debian.org/debian bookworm/main armhf libncurses-dev armhf 6.4-2 [310 kB] Get: 118 http://deb.debian.org/debian bookworm/main armhf libncurses5-dev armhf 6.4-2 [932 B] Get: 119 http://deb.debian.org/debian bookworm/main armhf libreadline-dev armhf 8.2-1.3 [136 kB] Get: 120 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [260 kB] Get: 121 http://deb.debian.org/debian bookworm/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB] Get: 122 http://deb.debian.org/debian bookworm/main armhf libpcre2-16-0 armhf 10.42-1 [211 kB] Get: 123 http://deb.debian.org/debian bookworm/main armhf libpcre2-32-0 armhf 10.42-1 [203 kB] Get: 124 http://deb.debian.org/debian bookworm/main armhf libpcre2-posix3 armhf 10.42-1 [55.0 kB] Get: 125 http://deb.debian.org/debian bookworm/main armhf libpcre2-dev armhf 10.42-1 [666 kB] Get: 126 http://deb.debian.org/debian bookworm/main armhf libpcre3 armhf 2:8.39-15 [315 kB] Get: 127 http://deb.debian.org/debian bookworm/main armhf libpcre16-3 armhf 2:8.39-15 [235 kB] Get: 128 http://deb.debian.org/debian bookworm/main armhf libpcre32-3 armhf 2:8.39-15 [226 kB] Get: 129 http://deb.debian.org/debian bookworm/main armhf libpcrecpp0v5 armhf 2:8.39-15 [141 kB] Get: 130 http://deb.debian.org/debian bookworm/main armhf libpcre3-dev armhf 2:8.39-15 [591 kB] Get: 131 http://deb.debian.org/debian bookworm/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB] Get: 132 http://deb.debian.org/debian bookworm/main armhf libpng-dev armhf 1.6.39-2 [343 kB] Get: 133 http://deb.debian.org/debian bookworm/main armhf libbz2-dev armhf 1.0.8-5+b1 [28.1 kB] Get: 134 http://deb.debian.org/debian bookworm/main armhf liblzma-dev armhf 5.4.1-0.2 [248 kB] Get: 135 http://deb.debian.org/debian bookworm/main armhf icu-devtools armhf 72.1-3 [183 kB] Get: 136 http://deb.debian.org/debian bookworm/main armhf libicu-dev armhf 72.1-3 [10.1 MB] Get: 137 http://deb.debian.org/debian bookworm/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB] Get: 138 http://deb.debian.org/debian bookworm/main armhf xauth armhf 1:1.1.2-1 [33.2 kB] Get: 139 http://deb.debian.org/debian bookworm/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB] Get: 140 http://deb.debian.org/debian bookworm/main armhf pkgconf-bin armhf 1.8.1-1 [28.5 kB] Get: 141 http://deb.debian.org/debian bookworm/main armhf pkgconf armhf 1.8.1-1 [25.9 kB] Get: 142 http://deb.debian.org/debian bookworm/main armhf pkg-config armhf 1.8.1-1 [13.7 kB] Get: 143 http://deb.debian.org/debian bookworm/main armhf r-base-dev all 4.2.2.20221110-2 [4492 B] Get: 144 http://deb.debian.org/debian bookworm/main armhf libfile-which-perl all 1.27-2 [15.1 kB] Get: 145 http://deb.debian.org/debian bookworm/main armhf libswitch-perl all 2.17-3 [20.3 kB] Get: 146 http://deb.debian.org/debian bookworm/main armhf libclone-perl armhf 0.46-1 [13.1 kB] Get: 147 http://deb.debian.org/debian bookworm/main armhf libencode-locale-perl all 1.05-3 [12.9 kB] Get: 148 http://deb.debian.org/debian bookworm/main armhf libtimedate-perl all 2.3300-2 [39.3 kB] Get: 149 http://deb.debian.org/debian bookworm/main armhf libhttp-date-perl all 6.05-2 [10.5 kB] Get: 150 http://deb.debian.org/debian bookworm/main armhf libio-html-perl all 1.004-3 [16.2 kB] Get: 151 http://deb.debian.org/debian bookworm/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 152 http://deb.debian.org/debian bookworm/main armhf libregexp-ipv6-perl all 0.03-3 [5212 B] Get: 153 http://deb.debian.org/debian bookworm/main armhf liburi-perl all 5.17-1 [90.4 kB] Get: 154 http://deb.debian.org/debian bookworm/main armhf libhttp-message-perl all 6.44-1 [81.7 kB] Get: 155 http://deb.debian.org/debian bookworm/main armhf libparams-util-perl armhf 1.102-2+b1 [23.8 kB] Get: 156 http://deb.debian.org/debian bookworm/main armhf libsub-install-perl all 0.929-1 [10.5 kB] Get: 157 http://deb.debian.org/debian bookworm/main armhf libdata-optlist-perl all 0.113-1 [10.6 kB] Get: 158 http://deb.debian.org/debian bookworm/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB] Get: 159 http://deb.debian.org/debian bookworm/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 160 http://deb.debian.org/debian bookworm/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.7 kB] Get: 161 http://deb.debian.org/debian bookworm/main armhf libparams-classify-perl armhf 0.015-2+b1 [21.9 kB] Get: 162 http://deb.debian.org/debian bookworm/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 163 http://deb.debian.org/debian bookworm/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 164 http://deb.debian.org/debian bookworm/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 165 http://deb.debian.org/debian bookworm/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 166 http://deb.debian.org/debian bookworm/main armhf libclass-load-perl all 0.25-2 [15.3 kB] Get: 167 http://deb.debian.org/debian bookworm/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.7 kB] Get: 168 http://deb.debian.org/debian bookworm/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 169 http://deb.debian.org/debian bookworm/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 170 http://deb.debian.org/debian bookworm/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 171 http://deb.debian.org/debian bookworm/main armhf libclass-c3-perl all 0.35-2 [21.0 kB] Get: 172 http://deb.debian.org/debian bookworm/main armhf libmro-compat-perl all 0.15-2 [11.8 kB] Get: 173 http://deb.debian.org/debian bookworm/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 174 http://deb.debian.org/debian bookworm/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB] Get: 175 http://deb.debian.org/debian bookworm/main armhf libsub-exporter-perl all 0.989-1 [50.5 kB] Get: 176 http://deb.debian.org/debian bookworm/main armhf libeval-closure-perl all 0.14-3 [11.2 kB] Get: 177 http://deb.debian.org/debian bookworm/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 178 http://deb.debian.org/debian bookworm/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 179 http://deb.debian.org/debian bookworm/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 180 http://deb.debian.org/debian bookworm/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB] Get: 181 http://deb.debian.org/debian bookworm/main armhf libmoose-perl armhf 2.2203-1 [793 kB] Get: 182 http://deb.debian.org/debian bookworm/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.5 kB] Get: 183 http://deb.debian.org/debian bookworm/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get: 184 http://deb.debian.org/debian bookworm/main armhf libsub-identify-perl armhf 0.14-3 [10.5 kB] Get: 185 http://deb.debian.org/debian bookworm/main armhf libsub-name-perl armhf 0.26-2+b1 [12.2 kB] Get: 186 http://deb.debian.org/debian bookworm/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 187 http://deb.debian.org/debian bookworm/main armhf libcurl3-gnutls armhf 7.88.1-9 [343 kB] Get: 188 http://deb.debian.org/debian bookworm/main armhf libwww-curl-perl armhf 4.17-10 [56.1 kB] Get: 189 http://deb.debian.org/debian bookworm/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 190 http://deb.debian.org/debian bookworm/main armhf dh-r all 20230121 [37.9 kB] Get: 191 http://deb.debian.org/debian bookworm/main armhf hdf5-helpers armhf 1.10.8+repack1-1 [27.9 kB] Get: 192 http://deb.debian.org/debian bookworm/main armhf libaec0 armhf 1.0.6-1+b1 [19.8 kB] Get: 193 http://deb.debian.org/debian bookworm/main armhf libsz2 armhf 1.0.6-1+b1 [7864 B] Get: 194 http://deb.debian.org/debian bookworm/main armhf libaec-dev armhf 1.0.6-1+b1 [18.1 kB] Get: 195 http://deb.debian.org/debian bookworm/main armhf libsnappy1v5 armhf 1.1.9-3 [23.8 kB] Get: 196 http://deb.debian.org/debian bookworm/main armhf libblosc1 armhf 1.21.3+ds-1 [36.8 kB] Get: 197 http://deb.debian.org/debian bookworm/main armhf libcurl4-openssl-dev armhf 7.88.1-9 [453 kB] Get: 198 http://deb.debian.org/debian bookworm/main armhf libdrm-common all 2.4.114-1 [7112 B] Get: 199 http://deb.debian.org/debian bookworm/main armhf libdrm2 armhf 2.4.114-1+b1 [33.0 kB] Get: 200 http://deb.debian.org/debian bookworm/main armhf libdrm-amdgpu1 armhf 2.4.114-1+b1 [19.3 kB] Get: 201 http://deb.debian.org/debian bookworm/main armhf libdrm-nouveau2 armhf 2.4.114-1+b1 [16.7 kB] Get: 202 http://deb.debian.org/debian bookworm/main armhf libdrm-radeon1 armhf 2.4.114-1+b1 [19.3 kB] Get: 203 http://deb.debian.org/debian bookworm/main armhf libedit2 armhf 3.1-20221030-2 [77.0 kB] Get: 204 http://deb.debian.org/debian bookworm/main armhf libfontenc1 armhf 1:1.1.4-1 [21.9 kB] Get: 205 http://deb.debian.org/debian bookworm/main armhf libglvnd0 armhf 1.6.0-1 [51.9 kB] Get: 206 http://deb.debian.org/debian bookworm/main armhf libglapi-mesa armhf 22.3.6-1+deb12u1 [41.0 kB] Get: 207 http://deb.debian.org/debian bookworm/main armhf libx11-xcb1 armhf 2:1.8.4-2 [192 kB] Get: 208 http://deb.debian.org/debian bookworm/main armhf libxcb-dri2-0 armhf 1.15-1 [107 kB] Get: 209 http://deb.debian.org/debian bookworm/main armhf libxcb-dri3-0 armhf 1.15-1 [107 kB] Get: 210 http://deb.debian.org/debian bookworm/main armhf libxcb-glx0 armhf 1.15-1 [120 kB] Get: 211 http://deb.debian.org/debian bookworm/main armhf libxcb-present0 armhf 1.15-1 [105 kB] Get: 212 http://deb.debian.org/debian bookworm/main armhf libxcb-randr0 armhf 1.15-1 [116 kB] Get: 213 http://deb.debian.org/debian bookworm/main armhf libxcb-sync1 armhf 1.15-1 [108 kB] Get: 214 http://deb.debian.org/debian bookworm/main armhf libxcb-xfixes0 armhf 1.15-1 [110 kB] Get: 215 http://deb.debian.org/debian bookworm/main armhf libxfixes3 armhf 1:6.0.0-2 [21.1 kB] Get: 216 http://deb.debian.org/debian bookworm/main armhf libxshmfence1 armhf 1.3-1 [8592 B] Get: 217 http://deb.debian.org/debian bookworm/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.2 kB] Get: 218 http://deb.debian.org/debian bookworm/main armhf libz3-4 armhf 4.8.12-3.1 [6061 kB] Get: 219 http://deb.debian.org/debian bookworm/main armhf libllvm15 armhf 1:15.0.6-4+b1 [20.5 MB] Get: 220 http://deb.debian.org/debian bookworm/main armhf libsensors-config all 1:3.6.0-7.1 [14.3 kB] Get: 221 http://deb.debian.org/debian bookworm/main armhf libsensors5 armhf 1:3.6.0-7.1 [31.6 kB] Get: 222 http://deb.debian.org/debian bookworm/main armhf libgl1-mesa-dri armhf 22.3.6-1+deb12u1 [5792 kB] Get: 223 http://deb.debian.org/debian bookworm/main armhf libglx-mesa0 armhf 22.3.6-1+deb12u1 [126 kB] Get: 224 http://deb.debian.org/debian bookworm/main armhf libglx0 armhf 1.6.0-1 [32.0 kB] Get: 225 http://deb.debian.org/debian bookworm/main armhf libgl1 armhf 1.6.0-1 [90.6 kB] Get: 226 http://deb.debian.org/debian bookworm/main armhf libhdf5-103-1 armhf 1.10.8+repack1-1 [1183 kB] Get: 227 http://deb.debian.org/debian bookworm/main armhf libhdf5-cpp-103-1 armhf 1.10.8+repack1-1 [119 kB] Get: 228 http://deb.debian.org/debian bookworm/main armhf libhdf5-fortran-102 armhf 1.10.8+repack1-1 [82.1 kB] Get: 229 http://deb.debian.org/debian bookworm/main armhf libhdf5-hl-100 armhf 1.10.8+repack1-1 [65.3 kB] Get: 230 http://deb.debian.org/debian bookworm/main armhf libhdf5-hl-fortran-100 armhf 1.10.8+repack1-1 [38.8 kB] Get: 231 http://deb.debian.org/debian bookworm/main armhf libhdf5-hl-cpp-100 armhf 1.10.8+repack1-1 [25.2 kB] Get: 232 http://deb.debian.org/debian bookworm/main armhf libssl-dev armhf 3.0.8-1 [2132 kB] Get: 233 http://deb.debian.org/debian bookworm/main armhf libhdf5-dev armhf 1.10.8+repack1-1 [2573 kB] Get: 234 http://deb.debian.org/debian bookworm/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1 [25.0 kB] Get: 235 http://deb.debian.org/debian bookworm/main armhf liblzf1 armhf 3.6-3 [9248 B] Get: 236 http://deb.debian.org/debian bookworm/main armhf libunwind8 armhf 1.6.2-3 [43.3 kB] Get: 237 http://deb.debian.org/debian bookworm/main armhf libxmu6 armhf 2:1.1.3-3 [52.6 kB] Get: 238 http://deb.debian.org/debian bookworm/main armhf libxpm4 armhf 1:3.5.12-1.1 [42.3 kB] Get: 239 http://deb.debian.org/debian bookworm/main armhf libxaw7 armhf 2:1.0.14-1 [167 kB] Get: 240 http://deb.debian.org/debian bookworm/main armhf libxfont2 armhf 1:2.0.6-1 [120 kB] Get: 241 http://deb.debian.org/debian bookworm/main armhf libxkbfile1 armhf 1:1.1.0-1 [67.2 kB] Get: 242 http://deb.debian.org/debian bookworm/main armhf libxrandr2 armhf 2:1.5.2-2+b1 [36.0 kB] Get: 243 http://deb.debian.org/debian bookworm/main armhf r-cran-littler armhf 0.3.17-1 [93.4 kB] Get: 244 http://deb.debian.org/debian bookworm/main armhf littler all 0.3.17-1 [14.4 kB] Get: 245 http://deb.debian.org/debian bookworm/main armhf python3-all armhf 3.11.2-1+b1 [1060 B] Get: 246 http://deb.debian.org/debian bookworm/main armhf python3-six all 1.16.0-4 [17.5 kB] Get: 247 http://deb.debian.org/debian bookworm/main armhf python3-dateutil all 2.8.2-2 [78.3 kB] Get: 248 http://deb.debian.org/debian bookworm/main armhf python3-decorator all 5.1.1-3 [14.9 kB] Get: 249 http://deb.debian.org/debian bookworm/main armhf python3-pkg-resources all 66.1.1-1 [296 kB] Get: 250 http://deb.debian.org/debian bookworm/main armhf python3-numpy armhf 1:1.24.2-1 [4165 kB] Get: 251 http://deb.debian.org/debian bookworm/main armhf python3-h5py-serial armhf 3.7.0-8 [730 kB] Get: 252 http://deb.debian.org/debian bookworm/main armhf python3-h5py all 3.7.0-8 [10.3 kB] Get: 253 http://deb.debian.org/debian bookworm/main armhf python3-joblib all 1.2.0-4 [211 kB] Get: 254 http://deb.debian.org/debian bookworm/main armhf python3-tz all 2022.7.1-3 [30.1 kB] Get: 255 http://deb.debian.org/debian bookworm/main armhf python3-pandas-lib armhf 1.5.3+dfsg-2 [3167 kB] Get: 256 http://deb.debian.org/debian bookworm/main armhf python3-pandas all 1.5.3+dfsg-2 [2885 kB] Get: 257 http://deb.debian.org/debian bookworm/main armhf python3-scipy armhf 1.10.1-2 [13.8 MB] Get: 258 http://deb.debian.org/debian bookworm/main armhf python3-setuptools all 66.1.1-1 [521 kB] Get: 259 http://deb.debian.org/debian bookworm/main armhf python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 260 http://deb.debian.org/debian bookworm/main armhf python3-sklearn-lib armhf 1.2.1+dfsg-1 [2172 kB] Get: 261 http://deb.debian.org/debian bookworm/main armhf python3-sklearn all 1.2.1+dfsg-1 [2103 kB] Get: 262 http://deb.debian.org/debian bookworm/main armhf r-bioc-biocgenerics all 0.44.0-2 [600 kB] Get: 263 http://deb.debian.org/debian bookworm/main armhf r-bioc-biobase armhf 2.58.0-2 [2111 kB] Get: 264 http://deb.debian.org/debian bookworm/main armhf r-bioc-biocbaseutils all 1.0.0+dfsg-2 [30.8 kB] Get: 265 http://deb.debian.org/debian bookworm/main armhf r-cran-lattice armhf 0.20-45-3 [1176 kB] Get: 266 http://deb.debian.org/debian bookworm/main armhf r-cran-matrix armhf 1.5-3-1 [3758 kB] Get: 267 http://deb.debian.org/debian bookworm/main armhf r-cran-matrixstats armhf 0.63.0-1 [457 kB] Get: 268 http://deb.debian.org/debian bookworm/main armhf r-bioc-matrixgenerics all 1.10.0-1 [302 kB] Get: 269 http://deb.debian.org/debian bookworm/main armhf r-bioc-s4vectors armhf 0.36.1-1 [2020 kB] Get: 270 http://deb.debian.org/debian bookworm/main armhf r-bioc-iranges armhf 2.32.0-1 [2215 kB] Get: 271 http://deb.debian.org/debian bookworm/main armhf r-bioc-delayedarray armhf 0.24.0+dfsg-1 [1936 kB] Get: 272 http://deb.debian.org/debian bookworm/main armhf r-cran-bitops armhf 1.0-7-1 [30.0 kB] Get: 273 http://deb.debian.org/debian bookworm/main armhf r-cran-rcurl armhf 1.98-1.10+dfsg-1 [780 kB] Get: 274 http://deb.debian.org/debian bookworm/main armhf r-bioc-genomeinfodbdata all 1.2.9-1 [11.7 MB] Get: 275 http://deb.debian.org/debian bookworm/main armhf r-bioc-genomeinfodb all 1.34.9-1 [3938 kB] Get: 276 http://deb.debian.org/debian bookworm/main armhf r-bioc-zlibbioc all 1.44.0+dfsg-1 [9200 B] Get: 277 http://deb.debian.org/debian bookworm/main armhf r-bioc-xvector armhf 0.38.0-1 [612 kB] Get: 278 http://deb.debian.org/debian bookworm/main armhf r-bioc-genomicranges armhf 1.50.2+dfsg-1 [1794 kB] Get: 279 http://deb.debian.org/debian bookworm/main armhf r-bioc-summarizedexperiment all 1.28.0+dfsg-1 [2018 kB] Get: 280 http://deb.debian.org/debian bookworm/main armhf r-cran-cli armhf 3.6.0-1 [1276 kB] Get: 281 http://deb.debian.org/debian bookworm/main armhf r-cran-generics all 0.1.3-1 [81.4 kB] Get: 282 http://deb.debian.org/debian bookworm/main armhf r-cran-glue armhf 1.6.2-1 [151 kB] Get: 283 http://deb.debian.org/debian bookworm/main armhf r-cran-rlang armhf 1.0.6-1 [1612 kB] Get: 284 http://deb.debian.org/debian bookworm/main armhf r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB] Get: 285 http://deb.debian.org/debian bookworm/main armhf r-cran-magrittr armhf 2.0.3-1 [201 kB] Get: 286 http://deb.debian.org/debian bookworm/main armhf r-cran-r6 all 2.5.1-1 [105 kB] Get: 287 http://deb.debian.org/debian bookworm/main armhf r-cran-fansi armhf 1.0.4-1 [609 kB] Get: 288 http://deb.debian.org/debian bookworm/main armhf r-cran-utf8 armhf 1.2.3-1 [129 kB] Get: 289 http://deb.debian.org/debian bookworm/main armhf r-cran-vctrs armhf 0.5.2-1 [1342 kB] Get: 290 http://deb.debian.org/debian bookworm/main armhf r-cran-pillar all 1.8.1+dfsg-1 [463 kB] Get: 291 http://deb.debian.org/debian bookworm/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 292 http://deb.debian.org/debian bookworm/main armhf r-cran-tibble armhf 3.1.8+dfsg-1 [513 kB] Get: 293 http://deb.debian.org/debian bookworm/main armhf r-cran-withr all 2.5.0-1 [236 kB] Get: 294 http://deb.debian.org/debian bookworm/main armhf r-cran-tidyselect armhf 1.2.0+dfsg-1 [219 kB] Get: 295 http://deb.debian.org/debian bookworm/main armhf r-cran-dplyr armhf 1.0.10-1 [1226 kB] Get: 296 http://deb.debian.org/debian bookworm/main armhf r-cran-purrr armhf 1.0.1-1 [504 kB] Get: 297 http://deb.debian.org/debian bookworm/main armhf r-cran-stringi armhf 1.7.12-1 [832 kB] Get: 298 http://deb.debian.org/debian bookworm/main armhf r-cran-stringr all 1.5.0-1 [295 kB] Get: 299 http://deb.debian.org/debian bookworm/main armhf r-cran-cpp11 all 0.4.3-1 [223 kB] Get: 300 http://deb.debian.org/debian bookworm/main armhf r-cran-tidyr armhf 1.3.0-1 [1178 kB] Get: 301 http://deb.debian.org/debian bookworm/main armhf r-bioc-multiassayexperiment all 1.24.0+dfsg-2 [1077 kB] Get: 302 http://deb.debian.org/debian bookworm/main armhf r-bioc-rhdf5lib armhf 1.20.0+dfsg-1 [102 kB] Get: 303 http://deb.debian.org/debian bookworm/main armhf r-bioc-rhdf5filters armhf 1.10.0+dfsg-1 [120 kB] Get: 304 http://deb.debian.org/debian bookworm/main armhf r-bioc-rhdf5 armhf 2.42.0+dfsg-1 [788 kB] Get: 305 http://deb.debian.org/debian bookworm/main armhf r-cran-beeswarm armhf 0.4.0-1+b1 [81.8 kB] Get: 306 http://deb.debian.org/debian bookworm/main armhf r-cran-codetools all 0.2-19-1 [90.9 kB] Get: 307 http://deb.debian.org/debian bookworm/main armhf r-cran-colorspace armhf 2.1-0+dfsg-1 [1688 kB] Get: 308 http://deb.debian.org/debian bookworm/main armhf r-cran-corrplot all 0.92-1 [131 kB] Get: 309 http://deb.debian.org/debian bookworm/main armhf r-cran-gtable all 0.3.1+dfsg-1 [165 kB] Get: 310 http://deb.debian.org/debian bookworm/main armhf r-cran-isoband armhf 0.2.7-1 [1610 kB] Get: 311 http://deb.debian.org/debian bookworm/main armhf r-cran-mass armhf 7.3-58.2-1 [1120 kB] Get: 312 http://deb.debian.org/debian bookworm/main armhf r-cran-nlme armhf 3.1.162-1 [2246 kB] Get: 313 http://deb.debian.org/debian bookworm/main armhf r-cran-mgcv armhf 1.8-41-1 [3127 kB] Get: 314 http://deb.debian.org/debian bookworm/main armhf r-cran-farver armhf 2.1.1-1 [1391 kB] Get: 315 http://deb.debian.org/debian bookworm/main armhf r-cran-labeling all 0.4.2-1 [62.7 kB] Get: 316 http://deb.debian.org/debian bookworm/main armhf r-cran-munsell all 0.5.0-2 [236 kB] Get: 317 http://deb.debian.org/debian bookworm/main armhf r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get: 318 http://deb.debian.org/debian bookworm/main armhf r-cran-viridislite all 0.4.1-1 [1299 kB] Get: 319 http://deb.debian.org/debian bookworm/main armhf r-cran-scales all 1.2.1-1 [614 kB] Get: 320 http://deb.debian.org/debian bookworm/main armhf r-cran-ggplot2 all 3.4.1+dfsg-1 [3333 kB] Get: 321 http://deb.debian.org/debian bookworm/main armhf r-cran-cowplot all 1.1.1+dfsg-1 [636 kB] Get: 322 http://deb.debian.org/debian bookworm/main armhf r-cran-crayon all 1.5.2-1 [165 kB] Get: 323 http://deb.debian.org/debian bookworm/main armhf r-cran-iterators all 1.0.14-1 [337 kB] Get: 324 http://deb.debian.org/debian bookworm/main armhf r-cran-foreach all 1.5.2-1 [122 kB] Get: 325 http://deb.debian.org/debian bookworm/main armhf r-cran-doparallel all 1.0.17-1 [188 kB] Get: 326 http://deb.debian.org/debian bookworm/main armhf r-cran-ellipsis armhf 0.3.2-2 [34.7 kB] Get: 327 http://deb.debian.org/debian bookworm/main armhf r-cran-forcats all 1.0.0-1 [413 kB] Get: 328 http://deb.debian.org/debian bookworm/main armhf r-cran-pkgkitten all 0.2.2-2 [27.0 kB] Get: 329 http://deb.debian.org/debian bookworm/main armhf r-cran-rcpp armhf 1.0.10-1 [2042 kB] Get: 330 http://deb.debian.org/debian bookworm/main armhf r-cran-plyr armhf 1.8.8-1 [829 kB] Get: 331 http://deb.debian.org/debian bookworm/main armhf r-cran-hms all 1.1.2-1 [104 kB] Get: 332 http://deb.debian.org/debian bookworm/main armhf r-cran-prettyunits all 1.1.1-2 [39.1 kB] Get: 333 http://deb.debian.org/debian bookworm/main armhf r-cran-progress all 1.2.2-2 [88.9 kB] Get: 334 http://deb.debian.org/debian bookworm/main armhf r-cran-reshape all 0.8.9-1 [169 kB] Get: 335 http://deb.debian.org/debian bookworm/main armhf r-cran-ggally all 2.1.2-1 [1670 kB] Get: 336 http://deb.debian.org/debian bookworm/main armhf r-cran-vipor all 0.4.5-3 [4345 kB] Get: 337 http://deb.debian.org/debian bookworm/main armhf r-cran-ggbeeswarm all 0.7.1-1 [1737 kB] Get: 338 http://deb.debian.org/debian bookworm/main armhf r-cran-ggrepel armhf 0.9.3-1 [241 kB] Get: 339 http://deb.debian.org/debian bookworm/main armhf r-cran-rprojroot all 2.0.3-1 [119 kB] Get: 340 http://deb.debian.org/debian bookworm/main armhf r-cran-here all 1.0.1-2 [48.7 kB] Get: 341 http://deb.debian.org/debian bookworm/main armhf r-cran-jsonlite armhf 1.8.4+dfsg-1 [438 kB] Get: 342 http://deb.debian.org/debian bookworm/main armhf r-cran-pheatmap all 1.0.12-2 [77.9 kB] Get: 343 http://deb.debian.org/debian bookworm/main armhf r-cran-png armhf 0.1-8-1 [40.1 kB] Get: 344 http://deb.debian.org/debian bookworm/main armhf r-cran-rappdirs armhf 0.3.3-1 [47.3 kB] Get: 345 http://deb.debian.org/debian bookworm/main armhf r-cran-rcpptoml armhf 0.2.2+dfsg-1 [99.6 kB] Get: 346 http://deb.debian.org/debian bookworm/main armhf r-cran-reshape2 armhf 1.4.4-2 [110 kB] Get: 347 http://deb.debian.org/debian bookworm/main armhf r-cran-reticulate armhf 1.28+dfsg-1 [1328 kB] Get: 348 http://deb.debian.org/debian bookworm/main armhf x11-xkb-utils armhf 7.7+7 [151 kB] Get: 349 http://deb.debian.org/debian bookworm/main armhf xkb-data all 2.35.1-1 [764 kB] Get: 350 http://deb.debian.org/debian bookworm/main armhf xserver-common all 2:21.1.7-2 [2381 kB] Get: 351 http://deb.debian.org/debian bookworm/main armhf xvfb armhf 2:21.1.7-2 [3009 kB] Fetched 255 MB in 22s (11.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.2-6) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.5.0-1_armhf.deb ... Unpacking libexpat1:armhf (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_armhf.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:armhf (3.11.2-6) ... Setting up libexpat1:armhf (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19645 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_armhf.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:armhf. Preparing to unpack .../3-libreadline8_8.2-1.3_armhf.deb ... Unpacking libreadline8:armhf (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:armhf. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_armhf.deb ... Unpacking libpython3.11-stdlib:armhf (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_armhf.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20079 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_armhf.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package libproc2-0:armhf. Preparing to unpack .../001-libproc2-0_2%3a4.0.2-3_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.2-3_armhf.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../004-openssl_3.0.8-1_armhf.deb ... Unpacking openssl (3.0.8-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../005-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.44-3_armhf.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../007-libmagic1_1%3a5.44-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.44-3_armhf.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../009-gettext-base_0.21-12_armhf.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../010-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../011-groff-base_1.22.4-10_armhf.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../012-bsdextrautils_2.38.1-5+b1_armhf.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../013-libpipeline1_1.5.7-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../014-man-db_2.11.2-2_armhf.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package ucf. Preparing to unpack .../015-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.19-3_armhf.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../021-dctrl-tools_2.24-3_armhf.deb ... Unpacking dctrl-tools (2.24-3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../022-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../023-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../024-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../025-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../026-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../027-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../028-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../029-libelf1_0.188-2.1_armhf.deb ... Unpacking libelf1:armhf (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../030-dwz_0.15-1_armhf.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../031-libicu72_72.1-3_armhf.deb ... Unpacking libicu72:armhf (72.1-3) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../032-libxml2_2.9.14+dfsg-1.2_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../033-gettext_0.21-12_armhf.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../034-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../035-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../036-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../037-python3-lib2to3_3.11.2-2_all.deb ... Unpacking python3-lib2to3 (3.11.2-2) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../038-python3-distutils_3.11.2-2_all.deb ... Unpacking python3-distutils (3.11.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../039-dh-python_5.20230130_all.deb ... Unpacking dh-python (5.20230130) ... Selecting previously unselected package zip. Preparing to unpack .../040-zip_3.0-13_armhf.deb ... Unpacking zip (3.0-13) ... Selecting previously unselected package unzip. Preparing to unpack .../041-unzip_6.0-28_armhf.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package libpaper1:armhf. Preparing to unpack .../042-libpaper1_1.1.29_armhf.deb ... Unpacking libpaper1:armhf (1.1.29) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../043-libpaper-utils_1.1.29_armhf.deb ... Unpacking libpaper-utils (1.1.29) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../044-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package libblas3:armhf. Preparing to unpack .../045-libblas3_3.11.0-2_armhf.deb ... Unpacking libblas3:armhf (3.11.0-2) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../046-libbrotli1_1.0.9-2+b6_armhf.deb ... Unpacking libbrotli1:armhf (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:armhf. Preparing to unpack .../047-libpng16-16_1.6.39-2_armhf.deb ... Unpacking libpng16-16:armhf (1.6.39-2) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../048-libfreetype6_2.12.1+dfsg-5_armhf.deb ... Unpacking libfreetype6:armhf (2.12.1+dfsg-5) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../049-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../050-fontconfig-config_2.14.1-4_armhf.deb ... Unpacking fontconfig-config (2.14.1-4) ... Selecting previously unselected package libfontconfig1:armhf. Preparing to unpack .../051-libfontconfig1_2.14.1-4_armhf.deb ... Unpacking libfontconfig1:armhf (2.14.1-4) ... Selecting previously unselected package libpixman-1-0:armhf. Preparing to unpack .../052-libpixman-1-0_0.42.2-1_armhf.deb ... Unpacking libpixman-1-0:armhf (0.42.2-1) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../053-libxau6_1%3a1.0.9-1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.9-1) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../054-libbsd0_0.11.7-2_armhf.deb ... Unpacking libbsd0:armhf (0.11.7-2) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../055-libxdmcp6_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../056-libxcb1_1.15-1_armhf.deb ... Unpacking libxcb1:armhf (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../057-libx11-data_2%3a1.8.4-2_all.deb ... Unpacking libx11-data (2:1.8.4-2) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../058-libx11-6_2%3a1.8.4-2_armhf.deb ... Unpacking libx11-6:armhf (2:1.8.4-2) ... Selecting previously unselected package libxcb-render0:armhf. Preparing to unpack .../059-libxcb-render0_1.15-1_armhf.deb ... Unpacking libxcb-render0:armhf (1.15-1) ... Selecting previously unselected package libxcb-shm0:armhf. Preparing to unpack .../060-libxcb-shm0_1.15-1_armhf.deb ... Unpacking libxcb-shm0:armhf (1.15-1) ... Selecting previously unselected package libxext6:armhf. Preparing to unpack .../061-libxext6_2%3a1.3.4-1+b1_armhf.deb ... Unpacking libxext6:armhf (2:1.3.4-1+b1) ... Selecting previously unselected package libxrender1:armhf. Preparing to unpack .../062-libxrender1_1%3a0.9.10-1.1_armhf.deb ... Unpacking libxrender1:armhf (1:0.9.10-1.1) ... Selecting previously unselected package libcairo2:armhf. Preparing to unpack .../063-libcairo2_1.16.0-7_armhf.deb ... Unpacking libcairo2:armhf (1.16.0-7) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../064-libsasl2-modules-db_2.1.28+dfsg-10_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../065-libsasl2-2_2.1.28+dfsg-10_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:armhf. Preparing to unpack .../066-libldap-2.5-0_2.5.13+dfsg-5_armhf.deb ... Unpacking libldap-2.5-0:armhf (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../067-libnghttp2-14_1.52.0-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.52.0-1) ... Selecting previously unselected package libpsl5:armhf. Preparing to unpack .../068-libpsl5_0.21.2-1_armhf.deb ... Unpacking libpsl5:armhf (0.21.2-1) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../069-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:armhf. Preparing to unpack .../070-libssh2-1_1.10.0-3+b1_armhf.deb ... Unpacking libssh2-1:armhf (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:armhf. Preparing to unpack .../071-libcurl4_7.88.1-9_armhf.deb ... Unpacking libcurl4:armhf (7.88.1-9) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../072-libglib2.0-0_2.74.6-2_armhf.deb ... Unpacking libglib2.0-0:armhf (2.74.6-2) ... Selecting previously unselected package libjpeg62-turbo:armhf. Preparing to unpack .../073-libjpeg62-turbo_1%3a2.1.5-2_armhf.deb ... Unpacking libjpeg62-turbo:armhf (1:2.1.5-2) ... Selecting previously unselected package libgfortran5:armhf. Preparing to unpack .../074-libgfortran5_12.2.0-14_armhf.deb ... Unpacking libgfortran5:armhf (12.2.0-14) ... Selecting previously unselected package liblapack3:armhf. Preparing to unpack .../075-liblapack3_3.11.0-2_armhf.deb ... Unpacking liblapack3:armhf (3.11.0-2) ... Selecting previously unselected package fontconfig. Preparing to unpack .../076-fontconfig_2.14.1-4_armhf.deb ... Unpacking fontconfig (2.14.1-4) ... Selecting previously unselected package libfribidi0:armhf. Preparing to unpack .../077-libfribidi0_1.0.8-2.1_armhf.deb ... Unpacking libfribidi0:armhf (1.0.8-2.1) ... Selecting previously unselected package libgraphite2-3:armhf. Preparing to unpack .../078-libgraphite2-3_1.3.14-1_armhf.deb ... Unpacking libgraphite2-3:armhf (1.3.14-1) ... Selecting previously unselected package libharfbuzz0b:armhf. Preparing to unpack .../079-libharfbuzz0b_6.0.0+dfsg-3_armhf.deb ... Unpacking libharfbuzz0b:armhf (6.0.0+dfsg-3) ... Selecting previously unselected package libthai-data. Preparing to unpack .../080-libthai-data_0.1.29-1_all.deb ... Unpacking libthai-data (0.1.29-1) ... 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Selecting previously unselected package r-cran-ellipsis. Preparing to unpack .../315-r-cran-ellipsis_0.3.2-2_armhf.deb ... Unpacking r-cran-ellipsis (0.3.2-2) ... Selecting previously unselected package r-cran-forcats. Preparing to unpack .../316-r-cran-forcats_1.0.0-1_all.deb ... Unpacking r-cran-forcats (1.0.0-1) ... Selecting previously unselected package r-cran-pkgkitten. Preparing to unpack .../317-r-cran-pkgkitten_0.2.2-2_all.deb ... Unpacking r-cran-pkgkitten (0.2.2-2) ... Selecting previously unselected package r-cran-rcpp. Preparing to unpack .../318-r-cran-rcpp_1.0.10-1_armhf.deb ... Unpacking r-cran-rcpp (1.0.10-1) ... Selecting previously unselected package r-cran-plyr. Preparing to unpack .../319-r-cran-plyr_1.8.8-1_armhf.deb ... Unpacking r-cran-plyr (1.8.8-1) ... Selecting previously unselected package r-cran-hms. Preparing to unpack .../320-r-cran-hms_1.1.2-1_all.deb ... Unpacking r-cran-hms (1.1.2-1) ... Selecting previously unselected package r-cran-prettyunits. 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Setting up libsub-identify-perl (0.14-3) ... Setting up libglib2.0-0:armhf (2.74.6-2) ... No schema files found: doing nothing. Setting up libglvnd0:armhf (1.6.0-1) ... Setting up unzip (6.0-28) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:armhf (1.0.9-2+b6) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.31-2) ... Setting up libsensors-config (1:3.6.0-7.1) ... Setting up libnghttp2-14:armhf (1.52.0-1) ... Setting up libmagic1:armhf (1:5.44-3) ... Setting up libdeflate0:armhf (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up xkb-data (2.35.1-1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.44-3) ... Setting up libunwind8:armhf (1.6.2-3) ... Setting up libjbig0:armhf (2.1-6.1) ... Setting up libpcre2-16-0:armhf (10.42-1) ... Setting up libaec0:armhf (1.0.6-1+b1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libsnappy1v5:armhf (1.1.9-3) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg-10) ... Setting up libpcre3:armhf (2:8.39-15) ... Setting up zip (3.0-13) ... Setting up libfontenc1:armhf (1:1.1.4-1) ... Setting up libpackage-stash-xs-perl:armhf (0.30-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:armhf (4.8.12-3.1) ... Setting up libpcre2-32-0:armhf (10.42-1) ... Setting up libblas3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libpkgconf3:armhf (1.8.1-1) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ... Setting up libswitch-perl (2.17-3) ... Setting up libx11-data (2:1.8.4-2) ... Setting up libjpeg62-turbo-dev:armhf (1:2.1.5-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:armhf (6.4-2) ... Setting up liblzf1:armhf (3.6-3) ... Setting up libfribidi0:armhf (1.0.8-2.1) ... Setting up libproc2-0:armhf (2:4.0.2-3) ... Setting up libssl-dev:armhf (3.0.8-1) ... Setting up libpng16-16:armhf (1.6.39-2) ... Setting up libpcre32-3:armhf (2:8.39-15) ... Setting up libvariable-magic-perl (0.63-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libtcl8.6:armhf (8.6.13+dfsg-2) ... Setting up autopoint (0.21-12) ... Setting up libb-hooks-op-check-perl:armhf (0.22-2+b1) ... Setting up icu-devtools (72.1-3) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up libsensors5:armhf (1:3.6.0-7.1) ... Setting up libglapi-mesa:armhf (22.3.6-1+deb12u1) ... Setting up libparams-util-perl (1.102-2+b1) ... Setting up libsasl2-2:armhf (2.1.28+dfsg-10) ... Setting up libgfortran5:armhf (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libwebp7:armhf (1.2.4-0.1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up liblzma-dev:armhf (5.4.1-0.2) ... Setting up libsub-name-perl:armhf (0.26-2+b1) ... Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-1) ... Setting up libpcre2-posix3:armhf (10.42-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libxshmfence1:armhf (1.3-1) ... Setting up libtiff6:armhf (4.5.0-5) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up procps (2:4.0.2-3) ... Setting up libblosc1:armhf (1.21.3+ds-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libthai-data (0.1.29-1) ... Setting up libdevel-globaldestruction-perl (0.14-4) ... Setting up libssh2-1:armhf (1.10.0-3+b1) ... Setting up libdevel-stacktrace-perl (2.0400-2) ... Setting up openssl (3.0.8-1) ... Setting up libbsd0:armhf (0.11.7-2) ... Setting up libdrm-common (2.4.114-1) ... Setting up libelf1:armhf (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libicu-dev:armhf (72.1-3) ... Setting up libxml2:armhf (2.9.14+dfsg-1.2) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.17-1) ... Setting up libblas-dev:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up libsz2:armhf (1.0.6-1+b1) ... Setting up dctrl-tools (2.24-3) ... Setting up libbz2-dev:armhf (1.0.8-5+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpcrecpp0v5:armhf (2:8.39-15) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libice6:armhf (2:1.0.10-1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up liblapack3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libncurses-dev:armhf (6.4-2) ... Setting up libxcb1:armhf (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libxcb-xfixes0:armhf (1.15-1) ... Setting up libpcre2-dev:armhf (10.42-1) ... Setting up libtool (2.4.7-5) ... Setting up libxcb-render0:armhf (1.15-1) ... Setting up libpcre3-dev:armhf (2:8.39-15) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libxcb-glx0:armhf (1.15-1) ... Setting up libedit2:armhf (3.1-20221030-2) ... Setting up libreadline8:armhf (8.2-1.3) ... Setting up libpng-dev:armhf (1.6.39-2) ... Setting up libaec-dev:armhf (1.0.6-1+b1) ... Setting up libjpeg-dev:armhf (1:2.1.5-2) ... Setting up libgfortran-12-dev:armhf (12.2.0-14) ... Setting up libxcb-shm0:armhf (1.15-1) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libreadline-dev:armhf (8.2-1.3) ... Setting up libdevel-callchecker-perl:armhf (0.008-2) ... Setting up libldap-2.5-0:armhf (2.5.13+dfsg-5) ... Setting up pkgconf:armhf (1.8.1-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libxcb-present0:armhf (1.15-1) ... Setting up dh-autoreconf (20) ... Setting up libthai0:armhf (0.1.29-1) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up gfortran-12 (12.2.0-14) ... Setting up libfreetype6:armhf (2.12.1+dfsg-5) ... Setting up libxcb-sync1:armhf (1.15-1) ... Setting up liblapack-dev:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libdata-optlist-perl (0.113-1) ... Setting up pkg-config:armhf (1.8.1-1) ... Setting up ucf (3.0043+nmu1) ... Setting up libxcb-dri2-0:armhf (1.15-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libdrm2:armhf (2.4.114-1+b1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libxcb-randr0:armhf (1.15-1) ... Setting up libllvm15:armhf (1:15.0.6-4+b1) ... Setting up libncurses5-dev:armhf (6.4-2) ... Setting up libcurl4:armhf (7.88.1-9) ... Setting up libx11-6:armhf (2:1.8.4-2) ... Setting up libharfbuzz0b:armhf (6.0.0+dfsg-3) ... Setting up libfontconfig1:armhf (2.14.1-4) ... Setting up libxkbfile1:armhf (1:1.1.0-1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libxfont2:armhf (1:2.0.6-1) ... Setting up libxmuu1:armhf (2:1.1.3-3) ... Setting up libsub-exporter-perl (0.989-1) ... Setting up liblbfgsb0:armhf (3.0+dfsg.4-1) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libdrm-amdgpu1:armhf (2.4.114-1+b1) ... Setting up libxcb-dri3-0:armhf (1.15-1) ... Setting up libpaper1:armhf (1.1.29) ... Creating config file /etc/papersize with new version Setting up libx11-xcb1:armhf (2:1.8.4-2) ... Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:armhf (2.4.114-1+b1) ... Setting up libxpm4:armhf (1:3.5.12-1.1) ... Setting up libxrender1:armhf (1:0.9.10-1.1) ... Setting up libdrm-radeon1:armhf (2.4.114-1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:armhf (3.11.2-6) ... Setting up libparams-classify-perl:armhf (0.015-2+b1) ... Setting up libpango-1.0-0:armhf (1.50.12+ds-1) ... Setting up libgl1-mesa-dri:armhf (22.3.6-1+deb12u1) ... Setting up libxext6:armhf (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:armhf (7.88.1-9) ... Setting up libpaper-utils (1.1.29) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:12.2.0-3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:armhf (1.16.0-7) ... Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libxfixes3:armhf (1:6.0.0-2) ... Setting up libcurl4-openssl-dev:armhf (7.88.1-9) ... Setting up libxrandr2:armhf (2:1.5.2-2+b1) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libxt6:armhf (1:1.2.1-1.1) ... Setting up libhdf5-103-1:armhf (1.10.8+repack1-1) ... Setting up xauth (1:1.1.2-1) ... Setting up libhdf5-cpp-103-1:armhf (1.10.8+repack1-1) ... Setting up libxss1:armhf (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:armhf (1.50.12+ds-1) ... Setting up libpangocairo-1.0-0:armhf (1.50.12+ds-1) ... Setting up libpython3-stdlib:armhf (3.11.2-1+b1) ... Setting up libhdf5-hl-100:armhf (1.10.8+repack1-1) ... Setting up python3.11 (3.11.2-6) ... Setting up libxft2:armhf (2.3.6-1) ... Setting up libxmu6:armhf (2:1.1.3-3) ... Setting up libglx-mesa0:armhf (22.3.6-1+deb12u1) ... Setting up libglx0:armhf (1.6.0-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libtk8.6:armhf (8.6.13-2) ... Setting up libwww-curl-perl:armhf (4.17-10) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libxaw7:armhf (2:1.0.14-1) ... Setting up libclass-load-perl (0.25-2) ... Setting up python3-tz (2022.7.1-3) ... Setting up python3-six (1.16.0-4) ... Setting up python3-decorator (5.1.1-3) ... Setting up libhdf5-hl-cpp-100:armhf (1.10.8+repack1-1) ... Setting up libgl1:armhf (1.6.0-1) ... Setting up r-base-core (4.2.2.20221110-2) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.2-1) ... Setting up r-cran-gtable (0.3.1+dfsg-1) ... Setting up r-cran-labeling (0.4.2-1) ... Setting up libhdf5-fortran-102:armhf (1.10.8+repack1-1) ... Setting up r-cran-lattice (0.20-45-3) ... Setting up r-cran-nlme (3.1.162-1) ... Setting up r-cran-farver (2.1.1-1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up r-cran-viridislite (0.4.1-1) ... Setting up libhdf5-hl-fortran-100:armhf (1.10.8+repack1-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up libclass-load-xs-perl (0.10-2+b1) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.2-2) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up r-cran-rappdirs (0.3.3-1) ... Setting up r-bioc-genomeinfodbdata (1.2.9-1) ... Setting up r-cran-littler (0.3.17-1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-2) ... Setting up dh-python (5.20230130) ... Setting up r-cran-rcpp (1.0.10-1) ... Setting up r-cran-codetools (0.2-19-1) ... Setting up r-bioc-biocgenerics (0.44.0-2) ... Setting up r-cran-rlang (1.0.6-1) ... Setting up r-cran-matrixstats (0.63.0-1) ... Setting up r-base-dev (4.2.2.20221110-2) ... Setting up littler (0.3.17-1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-joblib (1.2.0-4) ... Setting up r-bioc-matrixgenerics (1.10.0-1) ... Setting up r-cran-withr (2.5.0-1) ... Setting up libmoose-perl:armhf (2.2203-1) ... Setting up r-cran-vipor (0.4.5-3) ... Setting up r-cran-generics (0.1.3-1) ... Setting up x11-xkb-utils (7.7+7) ... Setting up r-cran-beeswarm (0.4.0-1+b1) ... Setting up r-cran-iterators (1.0.14-1) ... Setting up python3-threadpoolctl (3.1.0-1) ... Setting up r-cran-foreach (1.5.2-1) ... Setting up r-cran-prettyunits (1.1.1-2) ... Setting up r-cran-fansi (1.0.4-1) ... Setting up r-cran-mass (7.3-58.2-1) ... Setting up python3-all (3.11.2-1+b1) ... Setting up r-cran-glue (1.6.2-1) ... Setting up r-cran-cli (3.6.0-1) ... Setting up r-cran-lifecycle (1.0.3+dfsg-1) ... Setting up r-cran-bitops (1.0-7-1) ... Setting up r-cran-rprojroot (2.0.3-1) ... Setting up r-bioc-zlibbioc (1.44.0+dfsg-1) ... Setting up r-cran-png (0.1-8-1) ... Setting up r-bioc-biobase (2.58.0-2) ... Setting up r-cran-jsonlite (1.8.4+dfsg-1) ... Setting up r-cran-corrplot (0.92-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-utf8 (1.2.3-1) ... Setting up r-cran-colorspace (2.1-0+dfsg-1) ... Setting up r-cran-stringi (1.7.12-1) ... Setting up r-cran-cpp11 (0.4.3-1) ... Setting up r-cran-plyr (1.8.8-1) ... Setting up r-cran-rcolorbrewer (1.1-3-1) ... Setting up r-bioc-s4vectors (0.36.1-1) ... Setting up r-cran-isoband (0.2.7-1) ... Setting up libhdf5-dev (1.10.8+repack1-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-matrix (1.5-3-1) ... Setting up r-cran-here (1.0.1-2) ... Setting up r-cran-doparallel (1.0.17-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up r-cran-rcpptoml (0.2.2+dfsg-1) ... Setting up r-cran-mgcv (1.8-41-1) ... Setting up r-bioc-biocbaseutils (1.0.0+dfsg-2) ... Setting up r-bioc-iranges (2.32.0-1) ... Setting up xserver-common (2:21.1.7-2) ... Setting up r-cran-reticulate (1.28+dfsg-1) ... Setting up r-cran-rcurl (1.98-1.10+dfsg-1) ... Setting up r-cran-vctrs (0.5.2-1) ... Setting up r-bioc-delayedarray (0.24.0+dfsg-1) ... Setting up r-cran-pillar (1.8.1+dfsg-1) ... Setting up r-cran-ellipsis (0.3.2-2) ... Setting up r-cran-reshape (0.8.9-1) ... Setting up python3-scipy (1.10.1-2) ... Setting up r-cran-stringr (1.5.0-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up xvfb (2:21.1.7-2) ... Setting up python3-pandas-lib:armhf (1.5.3+dfsg-2) ... Setting up r-cran-munsell (0.5.0-2) ... Setting up r-cran-tibble (3.1.8+dfsg-1) ... Setting up r-bioc-rhdf5lib (1.20.0+dfsg-1) ... Setting up python3-sklearn-lib:armhf (1.2.1+dfsg-1) ... Setting up python3-h5py-serial (3.7.0-8) ... Setting up r-bioc-rhdf5filters (1.10.0+dfsg-1) ... Setting up r-cran-forcats (1.0.0-1) ... Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... Setting up r-cran-reshape2 (1.4.4-2) ... Setting up python3-pandas (1.5.3+dfsg-2) ... Setting up r-bioc-genomeinfodb (1.34.9-1) ... Setting up r-cran-hms (1.1.2-1) ... Setting up r-cran-scales (1.2.1-1) ... Setting up python3-h5py (3.7.0-8) ... Setting up r-cran-purrr (1.0.1-1) ... Setting up python3-sklearn (1.2.1+dfsg-1) ... Setting up r-bioc-xvector (0.38.0-1) ... Setting up r-cran-dplyr (1.0.10-1) ... Setting up dh-r (20230121) ... Setting up r-cran-progress (1.2.2-2) ... Setting up r-cran-pheatmap (1.0.12-2) ... Setting up r-cran-ggplot2 (3.4.1+dfsg-1) ... Setting up r-bioc-genomicranges (1.50.2+dfsg-1) ... Setting up r-bioc-rhdf5 (2.42.0+dfsg-1) ... Setting up r-cran-ggrepel (0.9.3-1) ... Setting up r-cran-tidyr (1.3.0-1) ... Setting up r-cran-ggbeeswarm (0.7.1-1) ... Setting up r-cran-cowplot (1.1.1+dfsg-1) ... Setting up r-bioc-summarizedexperiment (1.28.0+dfsg-1) ... Setting up r-cran-ggally (2.1.2-1) ... Setting up r-bioc-multiassayexperiment (1.24.0+dfsg-2) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... usrmerge is already the newest version (35). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/9066/tmp/hooks/A99_set_merged_usr starting Re-configuring usrmerge... removed '/etc/unsupported-skip-usrmerge-conversion' The system has been successfully converted. I: user script /srv/workspace/pbuilder/9066/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/r-bioc-mofa-1.6.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-bioc-mofa_1.6.1+dfsg-10_source.changes dpkg-buildpackage: info: source package r-bioc-mofa dpkg-buildpackage: info: source version 1.6.1+dfsg-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with python3 --buildsystem pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/r-bioc-mofa-1.6.1+dfsg' dh_auto_clean I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build' (and everything under it) 'build/bdist.linux-armhf' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf debian/python3-mofa.substvars mofapy.egg-info/ make[1]: Leaving directory '/build/r-bioc-mofa-1.6.1+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy copying mofapy/__init__.py -> /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy creating /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/run copying mofapy/run/python_template.py -> /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/run copying mofapy/run/__init__.py -> /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/run creating /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/updates.py -> /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/utils.py -> /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/entry_point.py -> /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/BayesNet.py -> /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/multiview_nodes.py -> /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/variational_nodes.py -> /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/__init__.py -> /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/build_model.py -> /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/distributions.py -> /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/nodes.py -> /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/init_nodes.py -> /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/mixed_nodes.py -> /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/nongaussian_nodes.py -> /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core copying mofapy/core/simulate.py -> /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core dh_auto_test -O--buildsystem=pybuild I: pybuild base:240: cd /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build; python3.11 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/r-bioc-mofa-1.6.1+dfsg' dh_auto_install -O--buildsystem=R --sourcedirectory=/build/r-bioc-mofa-1.6.1+dfsg I: R Package: MOFA Version: 1.6.1 I: Building using R version 4.2.2.20221110-2 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Tue, 07 Feb 2023 19:54:32 +0100 mkdir -p /build/r-bioc-mofa-1.6.1\+dfsg/debian/tmp/usr/lib/R/site-library xvfb-run --auto-servernum --server-num=20 -s "-screen 0 1024x768x24 -ac +extension GLX +render -noreset" R CMD INSTALL -l /build/r-bioc-mofa-1.6.1\+dfsg/debian/tmp/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 07 Feb 2023 19:54:32 +0100'" * installing *source* package 'MOFA' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: Please use MOFA2 instead of MOFA. Package 'MOFA' is deprecated and will be removed from Bioconductor version 3.13. ** testing if installed package can be loaded from final location Warning: Please use MOFA2 instead of MOFA. Package 'MOFA' is deprecated and will be removed from Bioconductor version 3.13. ** testing if installed package keeps a record of temporary installation path * DONE (MOFA) rm -f /build/r-bioc-mofa-1.6.1\+dfsg/debian/tmp/usr/lib/R/site-library/MOFA/LICENSE Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 302. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 303. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 306. W: Ignoring specified R dependency: R (>= 3.5) I: Using r-cran-knitr for Suggests:knitr W: Cannot find a debian package for Suggests:MOFAdata I: Using r-bioc-rhdf5 for Imports:rhdf5 I: Using r-cran-dplyr for Imports:dplyr I: Using r-cran-reshape2 for Imports:reshape2 I: Using r-cran-pheatmap for Imports:pheatmap I: Using r-cran-corrplot for Imports:corrplot I: Using r-cran-ggplot2 for Imports:ggplot2 I: Using r-cran-ggbeeswarm for Imports:ggbeeswarm I: Using r-cran-scales for Imports:scales I: Using r-cran-ggally for Imports:GGally I: Using r-cran-rcolorbrewer for Imports:RColorBrewer I: Using r-cran-cowplot for Imports:cowplot I: Using r-cran-ggrepel for Imports:ggrepel I: Using r-bioc-multiassayexperiment for Imports:MultiAssayExperiment I: Using r-bioc-biobase for Imports:Biobase I: Using r-cran-doparallel for Imports:doParallel I: Using r-cran-foreach for Imports:foreach I: Using r-cran-reticulate for Imports:reticulate I: BioConductor API version: r-api-bioc-3.16 I: Use r-bioc-mofa as Debian binary package for variables substitution find /build/r-bioc-mofa-1.6.1+dfsg/debian -name "*.Rmd" | xargs -r chmod -x mv debian/tmp tmp-install dh_auto_install I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running install_lib creating /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy creating /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr creating /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib creating /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11 creating /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages creating /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy creating /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/__pycache__ copying /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/__pycache__/__init__.cpython-311.pyc -> /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/__pycache__ copying /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/__init__.py -> /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy creating /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/run copying /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/run/python_template.py -> /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/run creating /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/run/__pycache__ copying /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/run/__pycache__/__init__.cpython-311.pyc -> /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/run/__pycache__ copying /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/run/__init__.py -> /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/run creating /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/updates.py -> /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/utils.py -> /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/entry_point.py -> /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/BayesNet.py -> /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/multiview_nodes.py -> /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/variational_nodes.py -> /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core creating /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/__pycache__ copying /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/__pycache__/__init__.cpython-311.pyc -> /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/__pycache__ copying /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/__init__.py -> /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/build_model.py -> /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/distributions.py -> /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/nodes.py -> /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/init_nodes.py -> /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/mixed_nodes.py -> /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/nongaussian_nodes.py -> /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core copying /build/r-bioc-mofa-1.6.1+dfsg/.pybuild/cpython3_3.11_mofapy/build/mofapy/core/simulate.py -> /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core byte-compiling /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/__init__.py to __init__.cpython-311.pyc byte-compiling /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/run/python_template.py to python_template.cpython-311.pyc byte-compiling /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/run/__init__.py to __init__.cpython-311.pyc byte-compiling /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/updates.py to updates.cpython-311.pyc byte-compiling /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/utils.py to utils.cpython-311.pyc byte-compiling /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/entry_point.py to entry_point.cpython-311.pyc byte-compiling /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/BayesNet.py to BayesNet.cpython-311.pyc byte-compiling /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/multiview_nodes.py to multiview_nodes.cpython-311.pyc byte-compiling /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/variational_nodes.py to variational_nodes.cpython-311.pyc byte-compiling /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/__init__.py to __init__.cpython-311.pyc byte-compiling /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/build_model.py to build_model.cpython-311.pyc byte-compiling /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/distributions.py to distributions.cpython-311.pyc byte-compiling /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/nodes.py to nodes.cpython-311.pyc byte-compiling /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/init_nodes.py to init_nodes.cpython-311.pyc byte-compiling /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/mixed_nodes.py to mixed_nodes.cpython-311.pyc byte-compiling /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/nongaussian_nodes.py to nongaussian_nodes.cpython-311.pyc byte-compiling /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy/core/simulate.py to simulate.cpython-311.pyc running install_egg_info running egg_info creating mofapy.egg-info writing mofapy.egg-info/PKG-INFO writing dependency_links to mofapy.egg-info/dependency_links.txt writing requirements to mofapy.egg-info/requires.txt writing top-level names to mofapy.egg-info/top_level.txt writing manifest file 'mofapy.egg-info/SOURCES.txt' reading manifest file 'mofapy.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'mofapy.egg-info/SOURCES.txt' Copying mofapy.egg-info to /build/r-bioc-mofa-1.6.1+dfsg/debian/python3-mofapy/usr/lib/python3.11/dist-packages/mofapy-1.2.egg-info Skipping SOURCES.txt running install_scripts make[1]: Leaving directory '/build/r-bioc-mofa-1.6.1+dfsg' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:302: Cannot find package that provides sklearn. Please add package that provides it to Build-Depends or add "sklearn python3-sklearn" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package r-bioc-mofa: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'r-bioc-mofa' in '../r-bioc-mofa_1.6.1+dfsg-10_all.deb'. dpkg-deb: building package 'python3-mofapy' in '../python3-mofapy_1.6.1+dfsg-10_all.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-mofa_1.6.1+dfsg-10_armhf.buildinfo dpkg-genchanges --build=binary -O../r-bioc-mofa_1.6.1+dfsg-10_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/9066/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/9066/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/9066 and its subdirectories I: Current time: Tue May 2 21:34:55 +14 2023 I: pbuilder-time-stamp: 1683012895