I: pbuilder: network access will be disabled during build I: Current time: Wed May 17 21:06:44 +14 2023 I: pbuilder-time-stamp: 1684307204 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fast5_0.6.5-7.dsc] I: copying [./fast5_0.6.5.orig.tar.gz] I: copying [./fast5_0.6.5-7.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Jun 27 02:57:04 2022 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fast5_0.6.5-7.dsc: no acceptable signature found dpkg-source: info: extracting fast5 in fast5-0.6.5 dpkg-source: info: unpacking fast5_0.6.5.orig.tar.gz dpkg-source: info: unpacking fast5_0.6.5-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying rpath.patch dpkg-source: info: applying gcc-12.patch dpkg-source: info: applying build-flags.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/23084/tmp/hooks/D01_modify_environment starting debug: Running on virt64a. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 May 17 21:07 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/23084/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/23084/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.2.15(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' DIRSTACK=() DISTRIBUTION=bookworm EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=78fea5c55c764d69ae1f76238be4cbc0 LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=23084 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.oPj5KzmQ/pbuilderrc_Ul24 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.oPj5KzmQ/b2 --logfile b2/build.log --extrapackages usrmerge fast5_0.6.5-7.dsc' SUDO_GID=114 SUDO_UID=108 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:3142/ I: uname -a Linux i-capture-the-hostname 5.10.0-23-arm64 #1 SMP Debian 5.10.179-1 (2023-05-12) aarch64 GNU/Linux I: ls -l /bin total 5072 -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 21 2022 cat -rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 21 2022 chown -rwxr-xr-x 1 root root 133532 Sep 21 2022 cp -rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash -rwxr-xr-x 1 root root 133220 Sep 21 2022 date -rwxr-xr-x 1 root root 67732 Sep 21 2022 dd -rwxr-xr-x 1 root root 68104 Sep 21 2022 df -rwxr-xr-x 1 root root 133632 Sep 21 2022 dir -rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 21 2022 echo -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep -rwxr-xr-x 1 root root 67548 Sep 21 2022 false -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep -rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt -rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname -rwxr-xr-x 1 root root 67720 Sep 21 2022 ln -rwxr-xr-x 1 root root 35132 Mar 23 23:51 login -rwxr-xr-x 1 root root 133632 Sep 21 2022 ls -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk -rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 23 23:02 more -rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount -rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint -rwxr-xr-x 1 root root 133532 Sep 21 2022 mv lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 21 2022 rm -rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir -rwxr-xr-x 1 root root 67400 Nov 3 2022 run-parts -rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed lrwxrwxrwx 1 root root 9 May 17 21:07 sh -> /bin/bash -rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 21 2022 stty -rwsr-xr-x 1 root root 50800 Mar 23 23:02 su -rwxr-xr-x 1 root root 67584 Sep 21 2022 sync -rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar -rwxr-xr-x 1 root root 67144 Nov 3 2022 tempfile -rwxr-xr-x 1 root root 133224 Sep 21 2022 touch -rwxr-xr-x 1 root root 67548 Sep 21 2022 true -rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount -rwxr-xr-x 1 root root 67572 Sep 21 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/23084/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, libhdf5-dev, libboost-python-dev, python3-all-dev, python3-setuptools, cython3, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libboost-python-dev{a} libboost-python1.74-dev{a} libboost-python1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libcurl4{a} libcurl4-openssl-dev{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libicu72{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libsz2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 90 newly installed, 0 to remove and 0 not upgraded. Need to get 51.8 MB of archives. After unpacking 297 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf libpython3.11-minimal armhf 3.11.2-6 [798 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf libexpat1 armhf 2.5.0-1 [79.9 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf python3.11-minimal armhf 3.11.2-6 [1714 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf python3-minimal armhf 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf libreadline8 armhf 8.2-1.3 [144 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf libpython3.11-stdlib armhf 3.11.2-6 [1678 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf python3.11 armhf 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf libpython3-stdlib armhf 3.11.2-1+b1 [9296 B] Get: 11 http://deb.debian.org/debian bookworm/main armhf python3 armhf 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 21 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 22 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 23 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf cython3 armhf 0.29.32-2+b1 [1230 kB] Get: 28 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 33 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 34 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 35 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 36 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 37 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 38 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB] Get: 39 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 40 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 41 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 42 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 43 http://deb.debian.org/debian bookworm/main armhf python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 44 http://deb.debian.org/debian bookworm/main armhf python3-distutils all 3.11.2-3 [131 kB] Get: 45 http://deb.debian.org/debian bookworm/main armhf dh-python all 5.20230130 [104 kB] Get: 46 http://deb.debian.org/debian bookworm/main armhf hdf5-helpers armhf 1.10.8+repack1-1 [27.9 kB] Get: 47 http://deb.debian.org/debian bookworm/main armhf libaec0 armhf 1.0.6-1+b1 [19.8 kB] Get: 48 http://deb.debian.org/debian bookworm/main armhf libsz2 armhf 1.0.6-1+b1 [7864 B] Get: 49 http://deb.debian.org/debian bookworm/main armhf libaec-dev armhf 1.0.6-1+b1 [18.1 kB] Get: 50 http://deb.debian.org/debian bookworm/main armhf libboost1.74-dev armhf 1.74.0+ds1-20 [9510 kB] Get: 51 http://deb.debian.org/debian bookworm/main armhf libboost-python1.74.0 armhf 1.74.0+ds1-20 [277 kB] Get: 52 http://deb.debian.org/debian bookworm/main armhf libpython3.11 armhf 3.11.2-6 [1710 kB] Get: 53 http://deb.debian.org/debian bookworm/main armhf libexpat1-dev armhf 2.5.0-1 [134 kB] Get: 54 http://deb.debian.org/debian bookworm/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB] Get: 55 http://deb.debian.org/debian bookworm/main armhf libpython3.11-dev armhf 3.11.2-6 [3518 kB] Get: 56 http://deb.debian.org/debian bookworm/main armhf libpython3-dev armhf 3.11.2-1+b1 [9556 B] Get: 57 http://deb.debian.org/debian bookworm/main armhf python3.11-dev armhf 3.11.2-6 [615 kB] Get: 58 http://deb.debian.org/debian bookworm/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 59 http://deb.debian.org/debian bookworm/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 60 http://deb.debian.org/debian bookworm/main armhf libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 61 http://deb.debian.org/debian bookworm/main armhf python3-dev armhf 3.11.2-1+b1 [26.2 kB] Get: 62 http://deb.debian.org/debian bookworm/main armhf libboost-python1.74-dev armhf 1.74.0+ds1-20 [304 kB] Get: 63 http://deb.debian.org/debian bookworm/main armhf libboost-python-dev armhf 1.74.0.3 [4632 B] Get: 64 http://deb.debian.org/debian bookworm/main armhf libbrotli1 armhf 1.0.9-2+b6 [271 kB] Get: 65 http://deb.debian.org/debian bookworm/main armhf libsasl2-modules-db armhf 2.1.28+dfsg-10 [19.0 kB] Get: 66 http://deb.debian.org/debian bookworm/main armhf libsasl2-2 armhf 2.1.28+dfsg-10 [52.3 kB] Get: 67 http://deb.debian.org/debian bookworm/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5 [158 kB] Get: 68 http://deb.debian.org/debian bookworm/main armhf libnghttp2-14 armhf 1.52.0-1 [60.8 kB] Get: 69 http://deb.debian.org/debian bookworm/main armhf libpsl5 armhf 0.21.2-1 [57.5 kB] Get: 70 http://deb.debian.org/debian bookworm/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 71 http://deb.debian.org/debian bookworm/main armhf libssh2-1 armhf 1.10.0-3+b1 [163 kB] Get: 72 http://deb.debian.org/debian bookworm/main armhf libcurl4 armhf 7.88.1-9 [347 kB] Get: 73 http://deb.debian.org/debian bookworm/main armhf libcurl4-openssl-dev armhf 7.88.1-9 [453 kB] Get: 74 http://deb.debian.org/debian bookworm/main armhf libgfortran5 armhf 12.2.0-14 [246 kB] Get: 75 http://deb.debian.org/debian bookworm/main armhf libhdf5-103-1 armhf 1.10.8+repack1-1 [1183 kB] Get: 76 http://deb.debian.org/debian bookworm/main armhf libhdf5-cpp-103-1 armhf 1.10.8+repack1-1 [119 kB] Get: 77 http://deb.debian.org/debian bookworm/main armhf libhdf5-fortran-102 armhf 1.10.8+repack1-1 [82.1 kB] Get: 78 http://deb.debian.org/debian bookworm/main armhf libhdf5-hl-100 armhf 1.10.8+repack1-1 [65.3 kB] Get: 79 http://deb.debian.org/debian bookworm/main armhf libhdf5-hl-fortran-100 armhf 1.10.8+repack1-1 [38.8 kB] Get: 80 http://deb.debian.org/debian bookworm/main armhf libhdf5-hl-cpp-100 armhf 1.10.8+repack1-1 [25.2 kB] Get: 81 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB] Get: 82 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [260 kB] Get: 83 http://deb.debian.org/debian bookworm/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB] Get: 84 http://deb.debian.org/debian bookworm/main armhf libssl-dev armhf 3.0.8-1 [2132 kB] Get: 85 http://deb.debian.org/debian bookworm/main armhf libhdf5-dev armhf 1.10.8+repack1-1 [2573 kB] Get: 86 http://deb.debian.org/debian bookworm/main armhf libpython3-all-dev armhf 3.11.2-1+b1 [1068 B] Get: 87 http://deb.debian.org/debian bookworm/main armhf python3-all armhf 3.11.2-1+b1 [1060 B] Get: 88 http://deb.debian.org/debian bookworm/main armhf python3-all-dev armhf 3.11.2-1+b1 [1076 B] Get: 89 http://deb.debian.org/debian bookworm/main armhf python3-pkg-resources all 66.1.1-1 [296 kB] Get: 90 http://deb.debian.org/debian bookworm/main armhf python3-setuptools all 66.1.1-1 [521 kB] Fetched 51.8 MB in 2s (21.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.2-6) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.5.0-1_armhf.deb ... Unpacking libexpat1:armhf (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_armhf.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:armhf (3.11.2-6) ... Setting up libexpat1:armhf (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19645 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_armhf.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:armhf. Preparing to unpack .../3-libreadline8_8.2-1.3_armhf.deb ... Unpacking libreadline8:armhf (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:armhf. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_armhf.deb ... Unpacking libpython3.11-stdlib:armhf (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_armhf.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20079 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_armhf.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... 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Unpacking libaec-dev:armhf (1.0.6-1+b1) ... Selecting previously unselected package libboost1.74-dev:armhf. Preparing to unpack .../39-libboost1.74-dev_1.74.0+ds1-20_armhf.deb ... Unpacking libboost1.74-dev:armhf (1.74.0+ds1-20) ... Selecting previously unselected package libboost-python1.74.0. Preparing to unpack .../40-libboost-python1.74.0_1.74.0+ds1-20_armhf.deb ... Unpacking libboost-python1.74.0 (1.74.0+ds1-20) ... Selecting previously unselected package libpython3.11:armhf. Preparing to unpack .../41-libpython3.11_3.11.2-6_armhf.deb ... Unpacking libpython3.11:armhf (3.11.2-6) ... Selecting previously unselected package libexpat1-dev:armhf. Preparing to unpack .../42-libexpat1-dev_2.5.0-1_armhf.deb ... Unpacking libexpat1-dev:armhf (2.5.0-1) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../43-zlib1g-dev_1%3a1.2.13.dfsg-1_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.2.13.dfsg-1) ... 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Unpacking python3-all (3.11.2-1+b1) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../77-python3-all-dev_3.11.2-1+b1_armhf.deb ... Unpacking python3-all-dev (3.11.2-1+b1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../78-python3-pkg-resources_66.1.1-1_all.deb ... Unpacking python3-pkg-resources (66.1.1-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../79-python3-setuptools_66.1.1-1_all.deb ... Unpacking python3-setuptools (66.1.1-1) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:armhf (1.5.7-1) ... Setting up libpsl5:armhf (0.21.2-1) ... Setting up libboost1.74-dev:armhf (1.74.0+ds1-20) ... Setting up libicu72:armhf (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up hdf5-helpers (1.10.8+repack1-1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... 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Setting up libssh2-1:armhf (1.10.0-3+b1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libboost-python1.74.0 (1.74.0+ds1-20) ... Setting up libelf1:armhf (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:armhf (2.9.14+dfsg-1.2) ... Setting up libsz2:armhf (1.0.6-1+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libreadline8:armhf (8.2-1.3) ... Setting up libaec-dev:armhf (1.0.6-1+b1) ... Setting up libjpeg-dev:armhf (1:2.1.5-2) ... Setting up libldap-2.5-0:armhf (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libjs-sphinxdoc (5.3.0-4) ... 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Setting up libhdf5-hl-fortran-100:armhf (1.10.8+repack1-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up libpython3-dev:armhf (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3.11-dev (3.11.2-6) ... Setting up python3-all (3.11.2-1+b1) ... Setting up libpython3-all-dev:armhf (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up libhdf5-dev (1.10.8+repack1-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3-all-dev (3.11.2-1+b1) ... Setting up libboost-python1.74-dev (1.74.0+ds1-20) ... Setting up libboost-python-dev (1.74.0.3) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... usrmerge is already the newest version (35). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/23084/tmp/hooks/A99_set_merged_usr starting Re-configuring usrmerge... removed '/etc/unsupported-skip-usrmerge-conversion' The system has been successfully converted. I: user script /srv/workspace/pbuilder/23084/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/fast5-0.6.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fast5_0.6.5-7_source.changes dpkg-buildpackage: info: source package fast5 dpkg-buildpackage: info: source version 0.6.5-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf dpkg-source: info: using options from fast5-0.6.5/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp debian/rules clean dh clean --with python3 --buildsystem=pybuild \ --sourcedirectory=python debian/rules override_dh_auto_clean make[1]: ingresso nella directory «/build/fast5-0.6.5» cd src && /usr/bin/make clean make[2]: ingresso nella directory «/build/fast5-0.6.5/src» rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack make[2]: uscita dalla directory «/build/fast5-0.6.5/src» dh_auto_clean I: pybuild base:240: python3.11 setup.py clean /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/fast5-0.6.5/python/fast5/fast5.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling fast5/fast5.pyx because it changed. [1/1] Cythonizing fast5/fast5.pyx running clean removing '/build/fast5-0.6.5/.pybuild/cpython3_3.11_fast5/build' (and everything under it) 'build/bdist.linux-armhf' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf python/fast5/fast5.cpp make[1]: uscita dalla directory «/build/fast5-0.6.5» dh_autoreconf_clean -O--buildsystem=pybuild -O--sourcedirectory=python dh_clean -O--buildsystem=pybuild -O--sourcedirectory=python debian/rules binary dh binary --with python3 --buildsystem=pybuild \ --sourcedirectory=python dh_update_autotools_config -O--buildsystem=pybuild -O--sourcedirectory=python dh_autoreconf -O--buildsystem=pybuild -O--sourcedirectory=python dh_auto_configure -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:240: python3.11 setup.py config /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/fast5-0.6.5/python/fast5/fast5.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling fast5/fast5.pyx because it changed. [1/1] Cythonizing fast5/fast5.pyx running config dh_auto_build -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_ext building 'fast5' extension creating build creating build/temp.linux-armhf-cpython-311 creating build/temp.linux-armhf-cpython-311/fast5 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/fast5-0.6.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I../src -I/usr/include/python3.11 -c fast5/fast5.cpp -o build/temp.linux-armhf-cpython-311/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial fast5/fast5.cpp: In function ‘int __Pyx_CLineForTraceback(PyThreadState*, int)’: fast5/fast5.cpp:14325:69: warning: unused parameter ‘tstate’ [-Wunused-parameter] 14325 | static int __Pyx_CLineForTraceback(CYTHON_NCP_UNUSED PyThreadState *tstate, int c_line) { | ~~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/c++/12/vector:70, from fast5/fast5.cpp:815: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator]’, inlined from ‘std::vector<_Tp> fast5::Huffman_Packer::decode(const Code_Type&, const Code_Params_Type&) const [with Int_Type = long long int]’ at ../include/fast5/Huffman_Packer.hpp:188:30: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator]’, inlined from ‘std::vector<_Tp> fast5::Huffman_Packer::decode(const Code_Type&, const Code_Params_Type&) const [with Int_Type = long long int]’ at ../include/fast5/Huffman_Packer.hpp:227:34: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘static fast5::Basecall_Events_Pack fast5::File::pack_ev(const fast5::Basecall_Events_Dataset&, const fast5::Basecall_Group_Description&, const std::string&, const std::vector&, const std::string&, const fast5::Channel_Id_Params&, double, unsigned int)’ at ../include/fast5.hpp:2094:35: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘static std::pair, std::vector > fast5::File::pack_event_start_length(unsigned int, std::function, std::function, long long int)’ at ../include/fast5.hpp:1871:27, inlined from ‘static fast5::Basecall_Events_Pack fast5::File::pack_ev(const fast5::Basecall_Events_Dataset&, const fast5::Basecall_Group_Description&, const std::string&, const std::vector&, const std::string&, const fast5::Channel_Id_Params&, double, unsigned int)’ at ../include/fast5.hpp:2101:58: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator]’, inlined from ‘static std::pair, std::vector > fast5::File::pack_event_start_length(unsigned int, std::function, std::function, long long int)’ at ../include/fast5.hpp:1872:26, inlined from ‘static fast5::Basecall_Events_Pack fast5::File::pack_ev(const fast5::Basecall_Events_Dataset&, const fast5::Basecall_Group_Description&, const std::string&, const std::vector&, const std::string&, const fast5::Channel_Id_Params&, double, unsigned int)’ at ../include/fast5.hpp:2101:58: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘static std::pair, std::vector > fast5::File::pack_event_start_length(unsigned int, std::function, std::function, long long int)’ at ../include/fast5.hpp:1871:27, inlined from ‘static fast5::EventDetection_Events_Pack fast5::File::pack_ed(const fast5::EventDetection_Events_Dataset&)’ at ../include/fast5.hpp:1958:54: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator]’, inlined from ‘static std::pair, std::vector > fast5::File::pack_event_start_length(unsigned int, std::function, std::function, long long int)’ at ../include/fast5.hpp:1872:26, inlined from ‘static fast5::EventDetection_Events_Pack fast5::File::pack_ed(const fast5::EventDetection_Events_Dataset&)’ at ../include/fast5.hpp:1958:54: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’, inlined from ‘void hdf5_tools::Compound_Map::add_member(const std::string&, U T::*) [with T = fast5::Basecall_Event; U = std::array]’ at ../include/fast5/hdf5_tools.hpp:710:34, inlined from ‘static const hdf5_tools::Compound_Map& fast5::Basecall_Event::compound_map()’ at ../include/fast5.hpp:419:25: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’, inlined from ‘void hdf5_tools::Compound_Map::add_member(const std::string&, U T::*) [with T = fast5::Basecall_Alignment_Entry; U = std::array]’ at ../include/fast5/hdf5_tools.hpp:710:34, inlined from ‘static const hdf5_tools::Compound_Map& fast5::Basecall_Alignment_Entry::compound_map()’ at ../include/fast5.hpp:566:25: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’, inlined from ‘void hdf5_tools::Compound_Map::add_member(const std::string&, U T::*) [with T = fast5::Basecall_Model_State; U = std::array]’ at ../include/fast5/hdf5_tools.hpp:710:34, inlined from ‘static const hdf5_tools::Compound_Map& fast5::Basecall_Model_State::compound_map()’ at ../include/fast5.hpp:314:25: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/fast5-0.6.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/fast5/fast5.o -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -L/usr/lib/arm-linux-gnueabihf -lhdf5 -o /build/fast5-0.6.5/.pybuild/cpython3_3.11_fast5/build/fast5.cpython-311-arm-linux-gnueabihf.so running build_scripts creating build/scripts-3.11 copying and adjusting bin/f5ls -> build/scripts-3.11 copying and adjusting bin/f5pack -> build/scripts-3.11 changing mode of build/scripts-3.11/f5ls from 644 to 755 changing mode of build/scripts-3.11/f5pack from 644 to 755 debian/rules override_dh_auto_test make[1]: ingresso nella directory «/build/fast5-0.6.5» cd src && /usr/bin/make make[2]: ingresso nella directory «/build/fast5-0.6.5/src» g++ -g -O2 -ffile-prefix-map=/build/fast5-0.6.5=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -Wdate-time -D_FORTIFY_SOURCE=2 -isystem /usr/include/hdf5/serial -I /build/fast5-0.6.5/src/../include -o f5ls f5ls.cpp -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl In file included from /usr/include/c++/12/vector:64, from /build/fast5-0.6.5/src/../include/fast5.hpp:19, from f5ls.cpp:12: /usr/include/c++/12/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/12/vector:63: /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = long long int*; _ForwardIterator = long long int*; _Allocator = allocator]’: /usr/include/c++/12/bits/stl_uninitialized.h:397:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 396 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::EventDetection_Event*; _ForwardIterator = fast5::EventDetection_Event*; _Allocator = allocator]’: /usr/include/c++/12/bits/stl_uninitialized.h:397:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 396 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Event*; _ForwardIterator = fast5::Basecall_Event*; _Allocator = allocator]’: /usr/include/c++/12/bits/stl_uninitialized.h:397:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 396 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Alignment_Entry*; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Allocator = allocator]’: /usr/include/c++/12/bits/stl_uninitialized.h:397:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 396 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = allocator]’: /usr/include/c++/12/bits/stl_uninitialized.h:397:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 396 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = long long int*; _Tp = long long int]’: /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 365 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:372:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 372 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = fast5::EventDetection_Event*; _Tp = fast5::EventDetection_Event]’: /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 365 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:372:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 372 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Event*; _Tp = fast5::Basecall_Event]’: /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 365 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:372:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 372 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Tp = fast5::Basecall_Alignment_Entry]’: /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 365 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:372:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 372 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’: /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 365 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:372:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 372 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Model_State*; _ForwardIterator = fast5::Basecall_Model_State*; _Allocator = allocator]’: /usr/include/c++/12/bits/stl_uninitialized.h:397:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 396 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = long long int*]’: /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = fast5::EventDetection_Event*]’: /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Event*]’: /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’: /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Model_State*; _Tp = fast5::Basecall_Model_State]’: /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 365 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:372:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 372 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = long long int*]’: /usr/include/c++/12/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 147 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::EventDetection_Event*]’: /usr/include/c++/12/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 147 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Event*]’: /usr/include/c++/12/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 147 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/12/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 147 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’: /usr/include/c++/12/bits/stl_uninitialized.h:135:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 135 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:135:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Model_State*]’: /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:50, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from f5ls.cpp:9: /usr/include/c++/12/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = move_iterator; _OI = long long int*]’: /usr/include/c++/12/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 611 | copy(_II __first, _II __last, _OI __result) | ^~~~ /usr/include/c++/12/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = move_iterator; _OI = fast5::EventDetection_Event*]’: /usr/include/c++/12/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = move_iterator; _OI = fast5::Basecall_Event*]’: /usr/include/c++/12/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = move_iterator; _OI = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/12/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’: /usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Model_State*]’: /usr/include/c++/12/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 147 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:47: /usr/include/c++/12/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(move_iterator<_IteratorL>) [with _Iterator = long long int*]’: /usr/include/c++/12/bits/stl_iterator.h:2569:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2569 | __miter_base(move_iterator<_Iterator> __it) | ^~~~~~~~~~~~ /usr/include/c++/12/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(move_iterator<_IteratorL>) [with _Iterator = fast5::EventDetection_Event*]’: /usr/include/c++/12/bits/stl_iterator.h:2569:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Event*]’: /usr/include/c++/12/bits/stl_iterator.h:2569:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/12/bits/stl_iterator.h:2569:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = move_iterator; _OI = fast5::Basecall_Model_State*]’: /usr/include/c++/12/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 611 | copy(_II __first, _II __last, _OI __result) | ^~~~ /usr/include/c++/12/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Model_State*]’: /usr/include/c++/12/bits/stl_iterator.h:2569:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2569 | __miter_base(move_iterator<_Iterator> __it) | ^~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/fast5-0.6.5=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -Wdate-time -D_FORTIFY_SOURCE=2 -isystem /usr/include/hdf5/serial -I /build/fast5-0.6.5/src/../include -o f5ls-full f5ls-full.cpp -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl In file included from /usr/include/c++/12/vector:64, from /build/fast5-0.6.5/src/../include/fast5.hpp:19, from f5ls-full.cpp:12: /usr/include/c++/12/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/12/vector:63: /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = long long int*; _ForwardIterator = long long int*; _Allocator = allocator]’: /usr/include/c++/12/bits/stl_uninitialized.h:397:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 396 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::EventDetection_Event*; _ForwardIterator = fast5::EventDetection_Event*; _Allocator = allocator]’: /usr/include/c++/12/bits/stl_uninitialized.h:397:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 396 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Event*; _ForwardIterator = fast5::Basecall_Event*; _Allocator = allocator]’: /usr/include/c++/12/bits/stl_uninitialized.h:397:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 396 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Alignment_Entry*; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Allocator = allocator]’: /usr/include/c++/12/bits/stl_uninitialized.h:397:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 396 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = allocator]’: /usr/include/c++/12/bits/stl_uninitialized.h:397:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 396 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = long long int*; _Tp = long long int]’: /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 365 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:372:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 372 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = fast5::EventDetection_Event*; _Tp = fast5::EventDetection_Event]’: /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 365 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:372:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 372 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Event*; _Tp = fast5::Basecall_Event]’: /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 365 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:372:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 372 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Tp = fast5::Basecall_Alignment_Entry]’: /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 365 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:372:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 372 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’: /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 365 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:372:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 372 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Model_State*; _ForwardIterator = fast5::Basecall_Model_State*; _Allocator = allocator]’: /usr/include/c++/12/bits/stl_uninitialized.h:397:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 396 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = long long int*]’: /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = fast5::EventDetection_Event*]’: /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Event*]’: /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’: /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Model_State*; _Tp = fast5::Basecall_Model_State]’: /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 365 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:372:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 372 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = long long int*]’: /usr/include/c++/12/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 147 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::EventDetection_Event*]’: /usr/include/c++/12/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 147 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Event*]’: /usr/include/c++/12/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 147 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/12/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 147 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’: /usr/include/c++/12/bits/stl_uninitialized.h:135:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 135 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:135:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Model_State*]’: /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:50, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from f5ls-full.cpp:9: /usr/include/c++/12/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = move_iterator; _OI = long long int*]’: /usr/include/c++/12/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 611 | copy(_II __first, _II __last, _OI __result) | ^~~~ /usr/include/c++/12/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = move_iterator; _OI = fast5::EventDetection_Event*]’: /usr/include/c++/12/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = move_iterator; _OI = fast5::Basecall_Event*]’: /usr/include/c++/12/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = move_iterator; _OI = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/12/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’: /usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Model_State*]’: /usr/include/c++/12/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 147 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:47: /usr/include/c++/12/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(move_iterator<_IteratorL>) [with _Iterator = long long int*]’: /usr/include/c++/12/bits/stl_iterator.h:2569:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2569 | __miter_base(move_iterator<_Iterator> __it) | ^~~~~~~~~~~~ /usr/include/c++/12/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(move_iterator<_IteratorL>) [with _Iterator = fast5::EventDetection_Event*]’: /usr/include/c++/12/bits/stl_iterator.h:2569:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Event*]’: /usr/include/c++/12/bits/stl_iterator.h:2569:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/12/bits/stl_iterator.h:2569:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = move_iterator; _OI = fast5::Basecall_Model_State*]’: /usr/include/c++/12/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 611 | copy(_II __first, _II __last, _OI __result) | ^~~~ /usr/include/c++/12/bits/stl_algobase.h:611:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Model_State*]’: /usr/include/c++/12/bits/stl_iterator.h:2569:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2569 | __miter_base(move_iterator<_Iterator> __it) | ^~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/fast5-0.6.5=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -Wdate-time -D_FORTIFY_SOURCE=2 -isystem /usr/include/hdf5/serial -I /build/fast5-0.6.5/src/../include -o hdf5-mod hdf5-mod.cpp -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl In file included from /usr/include/c++/12/vector:70, from /build/fast5-0.6.5/src/../include/fast5/hdf5_tools.hpp:21, from hdf5-mod.cpp:12: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, const hdf5_tools::Compound_Map*&, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, const hdf5_tools::Compound_Map*&, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/12/vector:63: /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = allocator]’: /usr/include/c++/12/bits/stl_uninitialized.h:397:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 396 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’: /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 365 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:372:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 372 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’: /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’: /usr/include/c++/12/bits/stl_uninitialized.h:135:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 135 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:135:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’: /usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/fast5-0.6.5=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -Wdate-time -D_FORTIFY_SOURCE=2 -isystem /usr/include/hdf5/serial -I /build/fast5-0.6.5/src/../include -o f5-mod f5-mod.cpp -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl In file included from /usr/include/c++/12/vector:70, from /build/fast5-0.6.5/src/../include/fast5.hpp:19, from f5-mod.cpp:12: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/12/vector:63: /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = allocator]’: /usr/include/c++/12/bits/stl_uninitialized.h:397:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 396 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’: /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 365 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:365:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:372:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 372 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’: /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’: /usr/include/c++/12/bits/stl_uninitialized.h:135:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 135 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:135:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’: /usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 make[2]: uscita dalla directory «/build/fast5-0.6.5/src» make[1]: uscita dalla directory «/build/fast5-0.6.5» create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild -O--sourcedirectory=python dh_prep -O--buildsystem=pybuild -O--sourcedirectory=python dh_auto_install -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/fast5-0.6.5/debian/python3-fast5 running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_ext running build_scripts running install_lib creating /build/fast5-0.6.5/debian/python3-fast5 creating /build/fast5-0.6.5/debian/python3-fast5/usr creating /build/fast5-0.6.5/debian/python3-fast5/usr/lib creating /build/fast5-0.6.5/debian/python3-fast5/usr/lib/python3.11 creating /build/fast5-0.6.5/debian/python3-fast5/usr/lib/python3.11/dist-packages copying /build/fast5-0.6.5/.pybuild/cpython3_3.11_fast5/build/fast5.cpython-311-arm-linux-gnueabihf.so -> /build/fast5-0.6.5/debian/python3-fast5/usr/lib/python3.11/dist-packages running install_egg_info running egg_info creating fast5.egg-info writing fast5.egg-info/PKG-INFO writing dependency_links to fast5.egg-info/dependency_links.txt writing top-level names to fast5.egg-info/top_level.txt writing manifest file 'fast5.egg-info/SOURCES.txt' reading manifest file 'fast5.egg-info/SOURCES.txt' writing manifest file 'fast5.egg-info/SOURCES.txt' Copying fast5.egg-info to /build/fast5-0.6.5/debian/python3-fast5/usr/lib/python3.11/dist-packages/fast5-0.6.2.egg-info Skipping SOURCES.txt running install_scripts creating /build/fast5-0.6.5/debian/python3-fast5/usr/bin copying build/scripts-3.11/f5pack -> /build/fast5-0.6.5/debian/python3-fast5/usr/bin copying build/scripts-3.11/f5ls -> /build/fast5-0.6.5/debian/python3-fast5/usr/bin changing mode of /build/fast5-0.6.5/debian/python3-fast5/usr/bin/f5pack to 755 changing mode of /build/fast5-0.6.5/debian/python3-fast5/usr/bin/f5ls to 755 debian/rules override_dh_install make[1]: ingresso nella directory «/build/fast5-0.6.5» dh_install mkdir -p debian/fast5/usr/bin/ mv debian/python3-fast5/usr/bin/* debian/fast5/usr/bin/ make[1]: uscita dalla directory «/build/fast5-0.6.5» dh_installdocs -O--buildsystem=pybuild -O--sourcedirectory=python dh_installchangelogs -O--buildsystem=pybuild -O--sourcedirectory=python dh_installexamples -O--buildsystem=pybuild -O--sourcedirectory=python dh_python3 -O--buildsystem=pybuild -O--sourcedirectory=python dh_installsystemduser -O--buildsystem=pybuild -O--sourcedirectory=python dh_perl -O--buildsystem=pybuild -O--sourcedirectory=python dh_link -O--buildsystem=pybuild -O--sourcedirectory=python dh_strip_nondeterminism -O--buildsystem=pybuild -O--sourcedirectory=python debian/rules override_dh_compress make[1]: ingresso nella directory «/build/fast5-0.6.5» cd src && /usr/bin/make clean make[2]: ingresso nella directory «/build/fast5-0.6.5/src» rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack make[2]: uscita dalla directory «/build/fast5-0.6.5/src» dh_compress -X .cpp -X .hpp make[1]: uscita dalla directory «/build/fast5-0.6.5» dh_fixperms -O--buildsystem=pybuild -O--sourcedirectory=python dh_missing -O--buildsystem=pybuild -O--sourcedirectory=python dh_dwz -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_strip -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_makeshlibs -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_shlibdeps -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_installdeb -O--buildsystem=pybuild -O--sourcedirectory=python dh_gencontrol -O--buildsystem=pybuild -O--sourcedirectory=python dh_md5sums -O--buildsystem=pybuild -O--sourcedirectory=python dh_builddeb -O--buildsystem=pybuild -O--sourcedirectory=python dpkg-deb: generazione del pacchetto "fast5" in "../fast5_0.6.5-7_all.deb". dpkg-deb: generazione del pacchetto "libfast5-dev" in "../libfast5-dev_0.6.5-7_all.deb". dpkg-deb: generazione del pacchetto "python3-fast5-dbgsym" in "../python3-fast5-dbgsym_0.6.5-7_armhf.deb". dpkg-deb: generazione del pacchetto "python3-fast5" in "../python3-fast5_0.6.5-7_armhf.deb". dpkg-genbuildinfo --build=binary -O../fast5_0.6.5-7_armhf.buildinfo dpkg-genchanges --build=binary -O../fast5_0.6.5-7_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from fast5-0.6.5/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/23084/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/23084/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/23084 and its subdirectories I: Current time: Wed May 17 21:18:07 +14 2023 I: pbuilder-time-stamp: 1684307887