I: pbuilder: network access will be disabled during build I: Current time: Sun May 7 15:41:45 +14 2023 I: pbuilder-time-stamp: 1683423705 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [clipper_2.1.20201109-1.dsc] I: copying [./clipper_2.1.20201109.orig.tar.gz] I: copying [./clipper_2.1.20201109-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Nov 18 06:51:49 2020 +14 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./clipper_2.1.20201109-1.dsc: no acceptable signature found dpkg-source: info: extracting clipper in clipper-2.1.20201109 dpkg-source: info: unpacking clipper_2.1.20201109.orig.tar.gz dpkg-source: info: unpacking clipper_2.1.20201109-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add-mmdb2-to-examples-LIBS.patch dpkg-source: info: applying narrowing-conversions.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/12818/tmp/hooks/D01_modify_environment starting debug: Running on virt32a. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 May 7 15:42 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/12818/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/12818/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.2.15(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4' DIRSTACK=() DISTRIBUTION=bookworm EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=4bd8d4cdae5f490f87fdca21ad0f1ae8 LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=12818 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fq6XoUe4/pbuilderrc_2c6O --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fq6XoUe4/b2 --logfile b2/build.log --extrapackages usrmerge clipper_2.1.20201109-1.dsc' SUDO_GID=113 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:3142/ I: uname -a Linux i-capture-the-hostname 5.10.0-22-armmp-lpae #1 SMP Debian 5.10.178-3 (2023-04-22) armv7l GNU/Linux I: ls -l /bin total 5072 -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 21 2022 cat -rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 21 2022 chown -rwxr-xr-x 1 root root 133532 Sep 21 2022 cp -rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash -rwxr-xr-x 1 root root 133220 Sep 21 2022 date -rwxr-xr-x 1 root root 67732 Sep 21 2022 dd -rwxr-xr-x 1 root root 68104 Sep 21 2022 df -rwxr-xr-x 1 root root 133632 Sep 21 2022 dir -rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 21 2022 echo -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep -rwxr-xr-x 1 root root 67548 Sep 21 2022 false -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep -rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt -rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname -rwxr-xr-x 1 root root 67720 Sep 21 2022 ln -rwxr-xr-x 1 root root 35132 Mar 23 23:51 login -rwxr-xr-x 1 root root 133632 Sep 21 2022 ls -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk -rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 23 23:02 more -rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount -rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint -rwxr-xr-x 1 root root 133532 Sep 21 2022 mv lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 21 2022 rm -rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir -rwxr-xr-x 1 root root 67400 Nov 3 2022 run-parts -rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed lrwxrwxrwx 1 root root 9 May 7 15:42 sh -> /bin/bash -rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 21 2022 stty -rwsr-xr-x 1 root root 50800 Mar 23 23:02 su -rwxr-xr-x 1 root root 67584 Sep 21 2022 sync -rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar -rwxr-xr-x 1 root root 67144 Nov 3 2022 tempfile -rwxr-xr-x 1 root root 133224 Sep 21 2022 touch -rwxr-xr-x 1 root root 67548 Sep 21 2022 true -rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount -rwxr-xr-x 1 root root 67572 Sep 21 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/12818/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), fftw-dev, gfortran, libccp4-dev, libmmdb2-dev, sfftw-dev, doxygen dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on fftw-dev; however: Package fftw-dev is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on libccp4-dev; however: Package libccp4-dev is not installed. pbuilder-satisfydepends-dummy depends on libmmdb2-dev; however: Package libmmdb2-dev is not installed. pbuilder-satisfydepends-dummy depends on sfftw-dev; however: Package sfftw-dev is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} fftw-dev{a} fftw2{a} file{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libccp4-data{a} libccp4-dev{a} libccp4c0{a} libccp4f0{a} libclang-cpp14{a} libclang1-14{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libevent-core-2.1-7{a} libevent-pthreads-2.1-7{a} libfabric1{a} libfile-stripnondeterminism-perl{a} libgfortran-12-dev{a} libgfortran5{a} libhwloc-plugins{a} libhwloc15{a} libibverbs1{a} libicu72{a} libllvm14{a} libmagic-mgc{a} libmagic1{a} libmmdb2-0{a} libmmdb2-dev{a} libmunge2{a} libnl-3-200{a} libnl-route-3-200{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix2{a} librdmacm1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} libz3-4{a} m4{a} man-db{a} ocl-icd-libopencl1{a} po-debconf{a} sensible-utils{a} sfftw-dev{a} sfftw2{a} The following packages are RECOMMENDED but will NOT be installed: curl ibverbs-providers libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 72 newly installed, 0 to remove and 0 not upgraded. Need to get 77.0 MB of archives. After unpacking 303 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 11 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 24 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 26 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 28 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf libbsd0 armhf 0.11.7-2 [113 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf libedit2 armhf 3.1-20221030-2 [77.0 kB] Get: 33 http://deb.debian.org/debian bookworm/main armhf libz3-4 armhf 4.8.12-3.1 [6061 kB] Get: 34 http://deb.debian.org/debian bookworm/main armhf libllvm14 armhf 1:14.0.6-12 [19.4 MB] Get: 35 http://deb.debian.org/debian bookworm/main armhf libclang-cpp14 armhf 1:14.0.6-12 [9417 kB] Get: 36 http://deb.debian.org/debian bookworm/main armhf libclang1-14 armhf 1:14.0.6-12 [5175 kB] Get: 37 http://deb.debian.org/debian bookworm/main armhf doxygen armhf 1.9.4-4 [4176 kB] Get: 38 http://deb.debian.org/debian bookworm/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-8 [120 kB] Get: 39 http://deb.debian.org/debian bookworm/main armhf libevent-pthreads-2.1-7 armhf 2.1.12-stable-8 [53.2 kB] Get: 40 http://deb.debian.org/debian bookworm/main armhf libnl-3-200 armhf 3.7.0-0.2+b1 [55.8 kB] Get: 41 http://deb.debian.org/debian bookworm/main armhf libnl-route-3-200 armhf 3.7.0-0.2+b1 [156 kB] Get: 42 http://deb.debian.org/debian bookworm/main armhf libibverbs1 armhf 44.0-2 [53.6 kB] Get: 43 http://deb.debian.org/debian bookworm/main armhf librdmacm1 armhf 44.0-2 [60.6 kB] Get: 44 http://deb.debian.org/debian bookworm/main armhf libfabric1 armhf 1.17.0-3 [385 kB] Get: 45 http://deb.debian.org/debian bookworm/main armhf libhwloc15 armhf 2.9.0-1 [127 kB] Get: 46 http://deb.debian.org/debian bookworm/main armhf libmunge2 armhf 0.5.15-2 [15.7 kB] Get: 47 http://deb.debian.org/debian bookworm/main armhf libpciaccess0 armhf 0.17-2 [48.7 kB] Get: 48 http://deb.debian.org/debian bookworm/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 49 http://deb.debian.org/debian bookworm/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 50 http://deb.debian.org/debian bookworm/main armhf libxcb1 armhf 1.15-1 [140 kB] Get: 51 http://deb.debian.org/debian bookworm/main armhf libx11-data all 2:1.8.4-2 [292 kB] Get: 52 http://deb.debian.org/debian bookworm/main armhf libx11-6 armhf 2:1.8.4-2 [695 kB] Get: 53 http://deb.debian.org/debian bookworm/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 54 http://deb.debian.org/debian bookworm/main armhf libxnvctrl0 armhf 525.85.05-1 [12.2 kB] Get: 55 http://deb.debian.org/debian bookworm/main armhf ocl-icd-libopencl1 armhf 2.3.1-1 [40.1 kB] Get: 56 http://deb.debian.org/debian bookworm/main armhf libhwloc-plugins armhf 2.9.0-1 [15.9 kB] Get: 57 http://deb.debian.org/debian bookworm/main armhf libpmix2 armhf 4.2.2-1+b1 [553 kB] Get: 58 http://deb.debian.org/debian bookworm/main armhf libopenmpi3 armhf 4.1.4-3+b1 [1849 kB] Get: 59 http://deb.debian.org/debian bookworm/main armhf fftw2 armhf 2.1.5-6 [190 kB] Get: 60 http://deb.debian.org/debian bookworm/main armhf fftw-dev armhf 2.1.5-6 [217 kB] Get: 61 http://deb.debian.org/debian bookworm/main armhf libgfortran5 armhf 12.2.0-14 [246 kB] Get: 62 http://deb.debian.org/debian bookworm/main armhf libgfortran-12-dev armhf 12.2.0-14 [298 kB] Get: 63 http://deb.debian.org/debian bookworm/main armhf gfortran-12 armhf 12.2.0-14 [7633 kB] Get: 64 http://deb.debian.org/debian bookworm/main armhf gfortran armhf 4:12.2.0-3 [1424 B] Get: 65 http://deb.debian.org/debian bookworm/main armhf libccp4-data all 8.0.0-2 [62.3 kB] Get: 66 http://deb.debian.org/debian bookworm/main armhf libccp4c0 armhf 8.0.0-2 [75.2 kB] Get: 67 http://deb.debian.org/debian bookworm/main armhf libmmdb2-0 armhf 2.0.22-1 [277 kB] Get: 68 http://deb.debian.org/debian bookworm/main armhf libccp4f0 armhf 8.0.0-2 [194 kB] Get: 69 http://deb.debian.org/debian bookworm/main armhf libccp4-dev armhf 8.0.0-2 [42.8 kB] Get: 70 http://deb.debian.org/debian bookworm/main armhf libmmdb2-dev armhf 2.0.22-1 [92.9 kB] Get: 71 http://deb.debian.org/debian bookworm/main armhf sfftw2 armhf 2.1.5-6 [192 kB] Get: 72 http://deb.debian.org/debian bookworm/main armhf sfftw-dev armhf 2.1.5-6 [220 kB] Fetched 77.0 MB in 4s (18.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_armhf.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../02-libmagic1_1%3a5.44-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_armhf.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_armhf.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_armhf.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_armhf.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.7-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1) ... 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Selecting previously unselected package libclang-cpp14. Preparing to unpack .../34-libclang-cpp14_1%3a14.0.6-12_armhf.deb ... Unpacking libclang-cpp14 (1:14.0.6-12) ... Selecting previously unselected package libclang1-14. Preparing to unpack .../35-libclang1-14_1%3a14.0.6-12_armhf.deb ... Unpacking libclang1-14 (1:14.0.6-12) ... Selecting previously unselected package doxygen. Preparing to unpack .../36-doxygen_1.9.4-4_armhf.deb ... Unpacking doxygen (1.9.4-4) ... Selecting previously unselected package libevent-core-2.1-7:armhf. Preparing to unpack .../37-libevent-core-2.1-7_2.1.12-stable-8_armhf.deb ... Unpacking libevent-core-2.1-7:armhf (2.1.12-stable-8) ... Selecting previously unselected package libevent-pthreads-2.1-7:armhf. Preparing to unpack .../38-libevent-pthreads-2.1-7_2.1.12-stable-8_armhf.deb ... Unpacking libevent-pthreads-2.1-7:armhf (2.1.12-stable-8) ... Selecting previously unselected package libnl-3-200:armhf. 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Unpacking libx11-6:armhf (2:1.8.4-2) ... Selecting previously unselected package libxext6:armhf. Preparing to unpack .../52-libxext6_2%3a1.3.4-1+b1_armhf.deb ... Unpacking libxext6:armhf (2:1.3.4-1+b1) ... Selecting previously unselected package libxnvctrl0:armhf. Preparing to unpack .../53-libxnvctrl0_525.85.05-1_armhf.deb ... Unpacking libxnvctrl0:armhf (525.85.05-1) ... Selecting previously unselected package ocl-icd-libopencl1:armhf. Preparing to unpack .../54-ocl-icd-libopencl1_2.3.1-1_armhf.deb ... Unpacking ocl-icd-libopencl1:armhf (2.3.1-1) ... Selecting previously unselected package libhwloc-plugins:armhf. Preparing to unpack .../55-libhwloc-plugins_2.9.0-1_armhf.deb ... Unpacking libhwloc-plugins:armhf (2.9.0-1) ... Selecting previously unselected package libpmix2:armhf. Preparing to unpack .../56-libpmix2_4.2.2-1+b1_armhf.deb ... Unpacking libpmix2:armhf (4.2.2-1+b1) ... Selecting previously unselected package libopenmpi3:armhf. Preparing to unpack .../57-libopenmpi3_4.1.4-3+b1_armhf.deb ... Unpacking libopenmpi3:armhf (4.1.4-3+b1) ... Selecting previously unselected package fftw2. Preparing to unpack .../58-fftw2_2.1.5-6_armhf.deb ... Unpacking fftw2 (2.1.5-6) ... Selecting previously unselected package fftw-dev. Preparing to unpack .../59-fftw-dev_2.1.5-6_armhf.deb ... Unpacking fftw-dev (2.1.5-6) ... Selecting previously unselected package libgfortran5:armhf. Preparing to unpack .../60-libgfortran5_12.2.0-14_armhf.deb ... Unpacking libgfortran5:armhf (12.2.0-14) ... Selecting previously unselected package libgfortran-12-dev:armhf. Preparing to unpack .../61-libgfortran-12-dev_12.2.0-14_armhf.deb ... Unpacking libgfortran-12-dev:armhf (12.2.0-14) ... Selecting previously unselected package gfortran-12. Preparing to unpack .../62-gfortran-12_12.2.0-14_armhf.deb ... Unpacking gfortran-12 (12.2.0-14) ... Selecting previously unselected package gfortran. Preparing to unpack .../63-gfortran_4%3a12.2.0-3_armhf.deb ... Unpacking gfortran (4:12.2.0-3) ... Selecting previously unselected package libccp4-data. Preparing to unpack .../64-libccp4-data_8.0.0-2_all.deb ... Unpacking libccp4-data (8.0.0-2) ... Selecting previously unselected package libccp4c0:armhf. Preparing to unpack .../65-libccp4c0_8.0.0-2_armhf.deb ... Unpacking libccp4c0:armhf (8.0.0-2) ... Selecting previously unselected package libmmdb2-0:armhf. Preparing to unpack .../66-libmmdb2-0_2.0.22-1_armhf.deb ... Unpacking libmmdb2-0:armhf (2.0.22-1) ... Selecting previously unselected package libccp4f0:armhf. Preparing to unpack .../67-libccp4f0_8.0.0-2_armhf.deb ... Unpacking libccp4f0:armhf (8.0.0-2) ... Selecting previously unselected package libccp4-dev:armhf. Preparing to unpack .../68-libccp4-dev_8.0.0-2_armhf.deb ... Unpacking libccp4-dev:armhf (8.0.0-2) ... Selecting previously unselected package libmmdb2-dev. Preparing to unpack .../69-libmmdb2-dev_2.0.22-1_armhf.deb ... Unpacking libmmdb2-dev (2.0.22-1) ... Selecting previously unselected package sfftw2. Preparing to unpack .../70-sfftw2_2.1.5-6_armhf.deb ... Unpacking sfftw2 (2.1.5-6) ... Selecting previously unselected package sfftw-dev. Preparing to unpack .../71-sfftw-dev_2.1.5-6_armhf.deb ... Unpacking sfftw-dev (2.1.5-6) ... Setting up libpipeline1:armhf (1.5.7-1) ... Setting up libpciaccess0:armhf (0.17-2) ... Setting up libxau6:armhf (1:1.0.9-1) ... Setting up libicu72:armhf (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmmdb2-0:armhf (2.0.22-1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:armhf (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libccp4-data (8.0.0-2) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:armhf (4.8.12-3.1) ... Setting up libmunge2 (0.5.15-2) ... Setting up libx11-data (2:1.8.4-2) ... Setting up libhwloc15:armhf (2.9.0-1) ... Setting up libevent-core-2.1-7:armhf (2.1.12-stable-8) ... Setting up libmmdb2-dev (2.0.22-1) ... Setting up autopoint (0.21-12) ... Setting up libccp4c0:armhf (8.0.0-2) ... Setting up libgfortran5:armhf (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up ocl-icd-libopencl1:armhf (2.3.1-1) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libnl-3-200:armhf (3.7.0-0.2+b1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libbsd0:armhf (0.11.7-2) ... Setting up libelf1:armhf (0.188-2.1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.2) ... Setting up libevent-pthreads-2.1-7:armhf (2.1.12-stable-8) ... Setting up libccp4f0:armhf (8.0.0-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up libxcb1:armhf (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libccp4-dev:armhf (8.0.0-2) ... Setting up libtool (2.4.7-5) ... Setting up libedit2:armhf (3.1-20221030-2) ... Setting up libgfortran-12-dev:armhf (12.2.0-14) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnl-route-3-200:armhf (3.7.0-0.2+b1) ... Setting up dh-autoreconf (20) ... Setting up gfortran-12 (12.2.0-14) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libllvm14:armhf (1:14.0.6-12) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libx11-6:armhf (2:1.8.4-2) ... Setting up libibverbs1:armhf (44.0-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:armhf (2:1.3.4-1+b1) ... Setting up libclang1-14 (1:14.0.6-12) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:12.2.0-3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxnvctrl0:armhf (525.85.05-1) ... Setting up libclang-cpp14 (1:14.0.6-12) ... Setting up librdmacm1:armhf (44.0-2) ... Setting up debhelper (13.11.4) ... Setting up libhwloc-plugins:armhf (2.9.0-1) ... Setting up doxygen (1.9.4-4) ... Setting up libfabric1:armhf (1.17.0-3) ... Setting up libpmix2:armhf (4.2.2-1+b1) ... Setting up libopenmpi3:armhf (4.1.4-3+b1) ... Setting up sfftw2 (2.1.5-6) ... Setting up fftw2 (2.1.5-6) ... Setting up sfftw-dev (2.1.5-6) ... Setting up fftw-dev (2.1.5-6) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... usrmerge is already the newest version (35). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/12818/tmp/hooks/A99_set_merged_usr starting Re-configuring usrmerge... removed '/etc/unsupported-skip-usrmerge-conversion' The system has been successfully converted. I: user script /srv/workspace/pbuilder/12818/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/clipper-2.1.20201109/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../clipper_2.1.20201109-1_source.changes dpkg-buildpackage: info: source package clipper dpkg-buildpackage: info: source version 2.1.20201109-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --ddeb-migration='libclipper2-dbg (<< 2.1.20160809-1~)' dh_auto_clean "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_autoreconf_clean "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" debian/rules override_dh_clean make[1]: Entering directory '/build/clipper-2.1.20201109' rm -f doxy.core.tag rm -rf doc/ dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libclipper-dev.substvars debian/libclipper2.substvars debian/libclipper-doc.substvars debian/files rm -fr -- debian/libclipper-dev/ debian/tmp/ debian/libclipper2/ debian/libclipper-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/build/clipper-2.1.20201109' debian/rules binary dh binary --ddeb-migration='libclipper2-dbg (<< 2.1.20160809-1~)' dh_update_autotools_config "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" cp -an --reflink=auto build-aux/config.guess debian/.debhelper/bucket/files/4676029966e14b0a9bfc430963a97196ea50451e4aa3ff23c41256b0046f6efe.tmp mv debian/.debhelper/bucket/files/4676029966e14b0a9bfc430963a97196ea50451e4aa3ff23c41256b0046f6efe.tmp debian/.debhelper/bucket/files/4676029966e14b0a9bfc430963a97196ea50451e4aa3ff23c41256b0046f6efe cp -f /usr/share/misc/config.guess ./build-aux/config.guess cp -an --reflink=auto build-aux/config.sub debian/.debhelper/bucket/files/4add30a10b137a5a4667e12868fb4783e385dbf865cfb7017b205321bd1a2f39.tmp mv debian/.debhelper/bucket/files/4add30a10b137a5a4667e12868fb4783e385dbf865cfb7017b205321bd1a2f39.tmp debian/.debhelper/bucket/files/4add30a10b137a5a4667e12868fb4783e385dbf865cfb7017b205321bd1a2f39 cp -f /usr/share/misc/config.sub ./build-aux/config.sub dh_autoreconf "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:58: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:58: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... m4/fftw.m4:35: SINGLE_FFTW2 is expanded from... configure.ac:58: the top level configure.ac:116: warning: AC_OUTPUT should be used without arguments. configure.ac:116: You should run autoupdate. configure.ac:10: installing 'build-aux/compile' configure.ac:8: installing 'build-aux/missing' clipper/Makefile.am: installing 'build-aux/depcomp' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/build/clipper-2.1.20201109' dh_auto_configure -- --enable-mmdb --enable-minimol --enable-cif --enable-ccp4 --enable-shared --disable-static --enable-fortran ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-mmdb --enable-minimol --enable-cif --enable-ccp4 --enable-shared --disable-static --enable-fortran checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... unsupported checking for g++ option to enable C++98 features... none needed checking dependency style of g++... none checking for ar... ar checking the archiver (ar) interface... ar checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for g77... no checking for xlf... no checking for f77... f77 checking whether the compiler supports GNU Fortran 77... yes checking whether f77 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... yes checking if f77 supports -c -o file.o... yes checking if f77 supports -c -o file.o... (cached) yes checking whether the f77 linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from f77... -v checking for Fortran 77 libraries of f77... -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgfortran -lm checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking for library containing cos... -lm checking for prefixed single-precision FFTW2 (sfftw.h)... yes checking for the pthreads library -lpthreads... no checking for the pthreads library -lpthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking for MMDB_CCIF_Init in -lmmdb2... yes checking for mmdb2/mmdb_manager.h... yes checking for ccp4_banner in -lccp4c... yes checking for ccp4/ccp4_general.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating clipper/Makefile config.status: creating clipper/core/Makefile config.status: creating clipper/contrib/Makefile config.status: creating examples/Makefile config.status: creating clipper.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration Summary ------------------------------ core: yes contrib: yes phs: yes cns: yes mmdb: yes minimol: yes cif: yes ccp4: yes cctbx: no fortran: yes make[1]: Leaving directory '/build/clipper-2.1.20201109' rm -f debian/libclipper-dev.debhelper.log debian/libclipper-doc.debhelper.log debian/libclipper2.debhelper.log debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/clipper-2.1.20201109' doxygen debian/Doxyfile warning: Tag 'TCL_SUBST' at line 203 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SYMBOL_CACHE_SIZE' at line 336 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 849 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1306 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 1404 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 1410 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 1571 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 1583 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 1592 of file 'debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. /build/clipper-2.1.20201109/clipper/core/cell.h:1: warning: the name 'lib/cell.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/clipper_instance.h:1: warning: the name 'lib/clipper_instance.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/clipper_memory.h:1: warning: the name 'lib/clipper_memory.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/clipper_message.h:1: warning: the name 'lib/clipper_message.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/clipper_precision.h:1: warning: the name 'lib/clipper_precision.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/clipper_stats.h:1: warning: the name 'lib/clipper_stats.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/clipper_sysdep.h:1: warning: the name 'lib/clipper_sysdep.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/clipper_test.h:1: warning: the name 'lib/clipper_test.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/clipper_thread.h:1: warning: the name 'lib/clipper_thread.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/clipper_types.h:1: warning: the name 'lib/clipper_types.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/clipper_util.h:1: warning: the name 'lib/clipper_util.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/container.h:1: warning: the name 'lib/container.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/container_hkl.h:1: warning: the name 'lib/container_hkl.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/container_map.h:1: warning: the name 'lib/container_map.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/container_types.h:1: warning: the name 'lib/container_types.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/coords.h:1: warning: the name 'lib/coords.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/derivs.h:1: warning: the name 'lib/derivs.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/fftmap.h:1: warning: the name 'lib/fftmap.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/fftmap_sparse.h:1: warning: the name 'lib/fftmap_sparse.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/hkl_compute.h:1: warning: the name 'lib/hkl_compute.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/hkl_data.h:1: warning: the name 'lib/hkl_data.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/hkl_datatypes.h:1: warning: the name 'lib/hkl_datatypes.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/hkl_info.h:1: warning: the name 'lib/hkl_info.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/hkl_lookup.h:1: warning: the name 'lib/hkl_lookup.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/hkl_operators.h:1: warning: the name 'lib/hkl_operators.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/map_interp.h:1: warning: the name 'lib/map_interp.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/map_utils.h:1: warning: the name 'lib/map_utils.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/nxmap.h:1: warning: the name 'lib/nxmap.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/nxmap_operator.h:1: warning: the name 'lib/nxmap_operator.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/resol_basisfn.h:1: warning: the name 'lib/resol_basisfn.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/resol_fn.h:1: warning: the name 'lib/resol_fn.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/resol_targetfn.h:1: warning: the name 'lib/resol_targetfn.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/rotation.h:1: warning: the name 'lib/rotation.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/spacegroup.h:1: warning: the name 'lib/spacegroup.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/symop.h:1: warning: the name 'lib/symop.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/test_core.h:1: warning: the name 'lib/test_core.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/test_data.h:1: warning: the name 'lib/test_data.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/xmap.h:1: warning: the name 'lib/xmap.h' supplied as the argument in the \file statement is not an input file /build/clipper-2.1.20201109/clipper/core/clipper_util.cpp:165: warning: no matching class member found for template void clipper::Util::swap< ftype32 >(float &a, ftype32 &b) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h 'template < T > static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h /build/clipper-2.1.20201109/clipper/core/clipper_util.cpp:166: warning: no matching class member found for template void clipper::Util::swap< ftype32 >(float &a, ftype32 &b, ftype32 &c) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h 'template < T > static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h /build/clipper-2.1.20201109/clipper/core/clipper_util.cpp:173: warning: no matching class member found for template void clipper::Util::swap< ftype64 >(double &a, ftype64 &b) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h 'template < T > static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h /build/clipper-2.1.20201109/clipper/core/clipper_util.cpp:174: warning: no matching class member found for template void clipper::Util::swap< ftype64 >(double &a, ftype64 &b, ftype64 &c) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h 'template < T > static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h /build/clipper-2.1.20201109/clipper/core/clipper_util.cpp:181: warning: no matching class member found for template void clipper::Util::swap< int >(int &a, int &b) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h 'template < T > static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h /build/clipper-2.1.20201109/clipper/core/clipper_util.cpp:182: warning: no matching class member found for template void clipper::Util::swap< int >(int &a, int &b, int &c) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h 'template < T > static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h /build/clipper-2.1.20201109/clipper/core/fftmap.cpp:425: warning: no matching class member found for template void clipper::FFTmap::get_recip_data< ftype32 >(const clipper::HKL &rfl, clipper::datatypes::F_phi< float > &fphi) const Possible candidates: 'template < T > void clipper::FFTmap::get_recip_data(const HKL &rfl, datatypes::F_phi< T > &fphi) const' at line 189 of file /build/clipper-2.1.20201109/clipper/core/fftmap.h 'datatypes::F_phi< ffttype > clipper::FFTmap::get_recip_data(const HKL &rfl) const' at line 199 of file /build/clipper-2.1.20201109/clipper/core/fftmap.h /build/clipper-2.1.20201109/clipper/core/fftmap.cpp:427: warning: no matching class member found for template void clipper::FFTmap::get_real_data< ftype32 >(const clipper::Coord_grid &c, float &datum) const Possible candidates: 'template < T > void clipper::FFTmap::get_real_data(const Coord_grid &c, T &datum) const' at line 194 of file /build/clipper-2.1.20201109/clipper/core/fftmap.h 'const ffttype & clipper::FFTmap::get_real_data(const Coord_grid &c) const' at line 201 of file /build/clipper-2.1.20201109/clipper/core/fftmap.h /build/clipper-2.1.20201109/clipper/core/fftmap.cpp:429: warning: no matching class member found for template void clipper::FFTmap::get_recip_data< ftype64 >(const clipper::HKL &rfl, clipper::datatypes::F_phi< double > &fphi) const Possible candidates: 'template < T > void clipper::FFTmap::get_recip_data(const HKL &rfl, datatypes::F_phi< T > &fphi) const' at line 189 of file /build/clipper-2.1.20201109/clipper/core/fftmap.h 'datatypes::F_phi< ffttype > clipper::FFTmap::get_recip_data(const HKL &rfl) const' at line 199 of file /build/clipper-2.1.20201109/clipper/core/fftmap.h /build/clipper-2.1.20201109/clipper/core/fftmap.cpp:431: warning: no matching class member found for template void clipper::FFTmap::get_real_data< ftype64 >(const clipper::Coord_grid &c, double &datum) const Possible candidates: 'template < T > void clipper::FFTmap::get_real_data(const Coord_grid &c, T &datum) const' at line 194 of file /build/clipper-2.1.20201109/clipper/core/fftmap.h 'const ffttype & clipper::FFTmap::get_real_data(const Coord_grid &c) const' at line 201 of file /build/clipper-2.1.20201109/clipper/core/fftmap.h /build/clipper-2.1.20201109/dox/clipper_contrib.dox:1: warning: found more than one \mainpage comment block! (first occurrence: /build/clipper-2.1.20201109/dox/clipper.dox, line 1), Skipping current block! /build/clipper-2.1.20201109/dox/clipper_minimol.dox:1: warning: found more than one \mainpage comment block! (first occurrence: /build/clipper-2.1.20201109/dox/clipper.dox, line 1), Skipping current block! /build/clipper-2.1.20201109/dox/clipper_mmdb.dox:1: warning: found more than one \mainpage comment block! (first occurrence: /build/clipper-2.1.20201109/dox/clipper.dox, line 1), Skipping current block! /build/clipper-2.1.20201109/dox/clipper_mmdbold.dox:1: warning: found more than one \mainpage comment block! (first occurrence: /build/clipper-2.1.20201109/dox/clipper.dox, line 1), Skipping current block! sh: line 1: latex: command not found error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log! /build/clipper-2.1.20201109/dox/develop.dox:167: warning: Illegal command \width found as part of a image /build/clipper-2.1.20201109/dox/installation.dox:18: warning: included file install.csh is not found. Check your EXAMPLE_PATH /build/clipper-2.1.20201109/clipper/core/atomsf.cpp:543: warning: argument 'The' of command @param is not found in the argument list of clipper::AtomShapeFn::rho(const Coord_orth &xyz) const /build/clipper-2.1.20201109/clipper/core/atomsf.cpp:588: warning: Found unknown command '\patam' /build/clipper-2.1.20201109/clipper/core/atomsf.cpp:583: warning: The following parameter of clipper::AtomShapeFn::rho_grad(const Coord_orth &xyz, ftype &rho, std::vector< ftype > &grad) const is not documented: parameter 'rho' /build/clipper-2.1.20201109/clipper/core/atomsf.cpp:670: warning: Found unknown command '\patam' /build/clipper-2.1.20201109/clipper/core/atomsf.cpp:665: warning: The following parameter of clipper::AtomShapeFn::rho_curv(const Coord_orth &xyz, ftype &rho, std::vector< ftype > &grad, Matrix< ftype > &curv) const is not documented: parameter 'rho' /build/clipper-2.1.20201109/clipper/core/atomsf.cpp:572: warning: argument 'invresolsq' of command @param is not found in the argument list of clipper::AtomShapeFn::rho(const ftype &rsq) const /build/clipper-2.1.20201109/clipper/core/atomsf.cpp:572: warning: argument 'The' of command @param is not found in the argument list of clipper::AtomShapeFn::rho(const ftype &rsq) const /build/clipper-2.1.20201109/clipper/core/atomsf.cpp:572: warning: The following parameter of clipper::AtomShapeFn::rho(const ftype &rsq) const is not documented: parameter 'rsq' /build/clipper-2.1.20201109/clipper/core/container_types.cpp:104: warning: argument 'rate_' of command @param is not found in the argument list of clipper::CGrid_sampling::init(const Spacegroup &spacegroup, const Cell &cell, const Resolution &resolution, const ftype rate) /build/clipper-2.1.20201109/clipper/core/container_types.cpp:104: warning: The following parameter of clipper::CGrid_sampling::init(const Spacegroup &spacegroup, const Cell &cell, const Resolution &resolution, const ftype rate) is not documented: parameter 'rate' /build/clipper-2.1.20201109/clipper/core/container_hkl.cpp:51: warning: The following parameter of clipper::CHKL_info::CHKL_info(const String name="", const Spacegroup &spacegroup=NullSpacegroup, const Cell &cell=NullCell, const Resolution &resolution=NullResolution, const bool &generate=false) is not documented: parameter 'name' /build/clipper-2.1.20201109/clipper/core/container_hkl.cpp:59: warning: The following parameter of clipper::CHKL_info::CHKL_info(Container &parent, const String name="", const bool &generate=false) is not documented: parameter 'generate' /build/clipper-2.1.20201109/clipper/core/container_map.h:180: warning: argument 'grid' of command @param is not found in the argument list of clipper::CNXmap_operator< T >::init(const Cell &cell, const Grid_sampling &grid_sampling, const NXmap< T > &nxmap, const RTop_orth &nxop) /build/clipper-2.1.20201109/clipper/core/container_map.h:180: warning: The following parameter of clipper::CNXmap_operator::init(const Cell &cell, const Grid_sampling &grid_sampling, const NXmap< T > &nxmap, const RTop_orth &nxop) is not documented: parameter 'grid_sampling' /build/clipper-2.1.20201109/clipper/core/coords.h:736: warning: The following parameter of clipper::Coord_grid::deindex(const Grid &g, const int &index) is not documented: parameter 'index' /build/clipper-2.1.20201109/clipper/core/coords.h:736: warning: found documented return type for clipper::Coord_grid::deindex that does not return anything /build/clipper-2.1.20201109/clipper/core/container_map.h:126: warning: argument 'name' of command @param is not found in the argument list of clipper::CXmap< T >::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling &grid_sampling) /build/clipper-2.1.20201109/clipper/core/container_map.h:126: warning: argument 'grid' of command @param is not found in the argument list of clipper::CXmap< T >::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling &grid_sampling) /build/clipper-2.1.20201109/clipper/core/container_map.h:126: warning: The following parameters of clipper::CXmap::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling &grid_sampling) are not documented: parameter 'cell' parameter 'grid_sampling' /build/clipper-2.1.20201109/clipper/core/fftmap.cpp:280: warning: argument 'precalc' of command @param is not found in the argument list of clipper::FFTmap::FFTmap(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling grid_sam, const FFTtype type=Default) /build/clipper-2.1.20201109/clipper/core/fftmap.cpp:280: warning: The following parameter of clipper::FFTmap::FFTmap(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling grid_sam, const FFTtype type=Default) is not documented: parameter 'type' /build/clipper-2.1.20201109/clipper/core/fftmap.cpp:296: warning: argument 'precalc' of command @param is not found in the argument list of clipper::FFTmap::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling grid_sam, const FFTtype type=Default) /build/clipper-2.1.20201109/clipper/core/fftmap.cpp:296: warning: The following parameter of clipper::FFTmap::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling grid_sam, const FFTtype type=Default) is not documented: parameter 'type' /build/clipper-2.1.20201109/clipper/core/fftmap.cpp:145: warning: argument 'Scale' of command @param is not found in the argument list of clipper::FFTmap_p1::fft_h_to_x(const ftype &scale) /build/clipper-2.1.20201109/clipper/core/fftmap.cpp:145: warning: The following parameter of clipper::FFTmap_p1::fft_h_to_x(const ftype &scale) is not documented: parameter 'scale' /build/clipper-2.1.20201109/clipper/core/fftmap.cpp:177: warning: argument 'Scale' of command @param is not found in the argument list of clipper::FFTmap_p1::fft_x_to_h(const ftype &scale) /build/clipper-2.1.20201109/clipper/core/fftmap.cpp:177: warning: The following parameter of clipper::FFTmap_p1::fft_x_to_h(const ftype &scale) is not documented: parameter 'scale' /build/clipper-2.1.20201109/clipper/core/fftmap.cpp:225: warning: The following parameter of clipper::FFTmap_p1::set_hkl(const HKL &hkl, const std::complex< ffttype > &f) is not documented: parameter 'f' /build/clipper-2.1.20201109/clipper/core/fftmap_sparse.cpp:66: warning: explicit link request to 'Estimate' could not be resolved /build/clipper-2.1.20201109/clipper/core/fftmap_sparse.cpp:125: warning: explicit link request to 'Estimate' could not be resolved /build/clipper-2.1.20201109/clipper/core/fftmap_sparse.cpp:248: warning: explicit link request to 'Estimate' could not be resolved /build/clipper-2.1.20201109/clipper/core/fftmap_sparse.cpp:279: warning: argument 'uvw' of command @param is not found in the argument list of clipper::FFTmap_sparse_p1_xh::require_cplx_data(const Coord_grid &hkl) /build/clipper-2.1.20201109/clipper/core/fftmap_sparse.cpp:279: warning: The following parameter of clipper::FFTmap_sparse_p1_xh::require_cplx_data(const Coord_grid &hkl) is not documented: parameter 'hkl' /build/clipper-2.1.20201109/clipper/core/fftmap_sparse.cpp:284: warning: argument 'uvw' of command @param is not found in the argument list of clipper::FFTmap_sparse_p1_xh::cplx_data(const Coord_grid &hkl) const /build/clipper-2.1.20201109/clipper/core/fftmap_sparse.cpp:284: warning: The following parameter of clipper::FFTmap_sparse_p1_xh::cplx_data(const Coord_grid &hkl) const is not documented: parameter 'hkl' /build/clipper-2.1.20201109/clipper/core/coords.h:703: warning: argument 'hkl' of command @param is not found in the argument list of clipper::HKL::sym_phase_shift(const Symop &op) const /build/clipper-2.1.20201109/clipper/core/coords.h:703: warning: The following parameter of clipper::HKL::sym_phase_shift(const Symop &op) const is not documented: parameter 'op' /build/clipper-2.1.20201109/clipper/core/hkl_data.h:510: warning: argument 'data' of command @param is not found in the argument list of clipper::HKL_data< T >::set_data(const HKL &hkl, const T &data_) /build/clipper-2.1.20201109/clipper/core/hkl_data.h:510: warning: The following parameter of clipper::HKL_data::set_data(const HKL &hkl, const T &data_) is not documented: parameter 'data_' /build/clipper-2.1.20201109/clipper/core/hkl_info.cpp:80: warning: The following parameter of clipper::HKL_info::HKL_info(const Spacegroup &spacegroup, const Cell &cell, const Resolution &resolution, const bool &generate=false) is not documented: parameter 'generate' /build/clipper-2.1.20201109/clipper/core/map_interp.h:208: warning: The following parameters of clipper::Interp_cubic::interp(const M &map, const Coord_map &pos, T &val) are not documented: parameter 'map' parameter 'val' /build/clipper-2.1.20201109/clipper/core/map_interp.h:208: warning: found documented return type for clipper::Interp_cubic::interp that does not return anything /build/clipper-2.1.20201109/clipper/core/map_interp.h:260: warning: The following parameter of clipper::Interp_cubic::interp_grad(const M &map, const Coord_map &pos, T &val, Grad_map< T > &grad) is not documented: parameter 'map' /build/clipper-2.1.20201109/clipper/core/map_interp.h:340: warning: The following parameters of clipper::Interp_cubic::interp_curv(const M &map, const Coord_map &pos, T &val, Grad_map< T > &grad, Curv_map< T > &curv) are not documented: parameter 'map' parameter 'curv' /build/clipper-2.1.20201109/clipper/core/map_interp.h:159: warning: The following parameter of clipper::Interp_linear::interp(const M &map, const Coord_map &pos, T &val) is not documented: parameter 'val' /build/clipper-2.1.20201109/clipper/core/map_interp.h:159: warning: found documented return type for clipper::Interp_linear::interp that does not return anything /build/clipper-2.1.20201109/clipper/core/map_interp.h:131: warning: The following parameter of clipper::Interp_nearest::interp(const M &map, const Coord_map &pos, T &val) is not documented: parameter 'val' /build/clipper-2.1.20201109/clipper/core/map_interp.h:131: warning: found documented return type for clipper::Interp_nearest::interp that does not return anything /build/clipper-2.1.20201109/clipper/core/map_utils.cpp:55: warning: Found unknown command '\params' /build/clipper-2.1.20201109/clipper/core/map_utils.cpp:56: warning: Found unknown command '\params' /build/clipper-2.1.20201109/clipper/core/map_utils.cpp:64: warning: Found unknown command '\params' /build/clipper-2.1.20201109/clipper/core/map_utils.cpp:65: warning: Found unknown command '\params' /build/clipper-2.1.20201109/clipper/core/map_utils.h:113: warning: Found unknown command '\params' /build/clipper-2.1.20201109/clipper/core/nxmap.h:384: warning: argument 'curv' of command @param is not found in the argument list of clipper::NXmap< T >::interp_grad(const Coord_map &pos, T &val, Grad_map< T > &grad) const /build/clipper-2.1.20201109/clipper/core/resol_fn.cpp:141: warning: argument 'damp_' of command @param is not found in the argument list of clipper::ResolutionFn::ResolutionFn(const HKL_info &hkl_info, const BasisFn_base &basisfn, const TargetFn_base &targetfn, const std::vector< ftype > ¶ms, const ftype damp=0.0, const bool debug=false) /build/clipper-2.1.20201109/clipper/core/resol_fn.cpp:141: warning: The following parameters of clipper::ResolutionFn::ResolutionFn(const HKL_info &hkl_info, const BasisFn_base &basisfn, const TargetFn_base &targetfn, const std::vector< ftype > ¶ms, const ftype damp=0.0, const bool debug=false) are not documented: parameter 'damp' parameter 'debug' /build/clipper-2.1.20201109/clipper/core/resol_fn.cpp:200: warning: argument 'damp_' of command @param is not found in the argument list of clipper::ResolutionFn_nonlinear::ResolutionFn_nonlinear(const HKL_info &hkl_info, const BasisFn_base &basisfn, const TargetFn_base &targetfn, const std::vector< ftype > ¶ms, const ftype damp=0.0, const bool debug=false) /build/clipper-2.1.20201109/clipper/core/resol_fn.cpp:200: warning: The following parameters of clipper::ResolutionFn_nonlinear::ResolutionFn_nonlinear(const HKL_info &hkl_info, const BasisFn_base &basisfn, const TargetFn_base &targetfn, const std::vector< ftype > ¶ms, const ftype damp=0.0, const bool debug=false) are not documented: parameter 'params' parameter 'damp' parameter 'debug' /build/clipper-2.1.20201109/clipper/core/spacegroup.cpp:462: warning: argument 'name' of command @param is not found in the argument list of clipper::Spgr_descr::Spgr_descr(const String &symb, TYPE type=Unknown) /build/clipper-2.1.20201109/clipper/core/spacegroup.cpp:462: warning: The following parameter of clipper::Spgr_descr::Spgr_descr(const String &symb, TYPE type=Unknown) is not documented: parameter 'symb' /build/clipper-2.1.20201109/clipper/core/symop.cpp:118: warning: argument 'mat' of command @param is not found in the argument list of clipper::Symop::Symop(const RTop<> &rt) /build/clipper-2.1.20201109/clipper/core/symop.cpp:118: warning: The following parameter of clipper::Symop::Symop(const RTop<> &rt) is not documented: parameter 'rt' /build/clipper-2.1.20201109/clipper/core/resol_targetfn.h:86: warning: Found unknown command '\Note' /build/clipper-2.1.20201109/clipper/core/resol_targetfn.h:62: warning: Found unknown command '\Note' /build/clipper-2.1.20201109/clipper/core/coords.cpp:626: warning: argument 'u' of command @param is not found in the argument list of clipper::U_aniso_frac::transform(const RTop_frac &op) const /build/clipper-2.1.20201109/clipper/core/coords.cpp:626: warning: The following parameter of clipper::U_aniso_frac::transform(const RTop_frac &op) const is not documented: parameter 'op' /build/clipper-2.1.20201109/clipper/core/coords.cpp:614: warning: argument 'u' of command @param is not found in the argument list of clipper::U_aniso_orth::transform(const RTop_orth &op) const /build/clipper-2.1.20201109/clipper/core/coords.cpp:614: warning: The following parameter of clipper::U_aniso_orth::transform(const RTop_orth &op) const is not documented: parameter 'op' /build/clipper-2.1.20201109/clipper/core/xmap.h:600: warning: The following parameter of clipper::Xmap::fft_from(const H &fphidata, const FFTtype type=Default) is not documented: parameter 'type' /build/clipper-2.1.20201109/clipper/core/xmap.h:665: warning: The following parameter of clipper::Xmap::fft_to(H &fphidata, const FFTtype type=Default) const is not documented: parameter 'type' make[1]: Leaving directory '/build/clipper-2.1.20201109' dh_auto_build "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" -Nlibclipper-doc make -j4 make[1]: Entering directory '/build/clipper-2.1.20201109' make all-recursive make[2]: Entering directory '/build/clipper-2.1.20201109' Making all in clipper make[3]: Entering directory '/build/clipper-2.1.20201109/clipper' Making all in core make[4]: Entering directory '/build/clipper-2.1.20201109/clipper/core' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-atomsf.lo `test -f 'atomsf.cpp' || echo './'`atomsf.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-coords.lo `test -f 'coords.cpp' || echo './'`coords.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-nxmap_operator.lo `test -f 'nxmap_operator.cpp' || echo './'`nxmap_operator.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-cell.lo `test -f 'cell.cpp' || echo './'`cell.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c cell.cpp -fPIC -DPIC -o .libs/libclipper_core_la-cell.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c coords.cpp -fPIC -DPIC -o .libs/libclipper_core_la-coords.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c atomsf.cpp -fPIC -DPIC -o .libs/libclipper_core_la-atomsf.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c nxmap_operator.cpp -fPIC -DPIC -o .libs/libclipper_core_la-nxmap_operator.o In file included from clipper_types.h:49, from cell.h:50, from cell.cpp:44: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from coords.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from atomsf.h:50, from atomsf.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from fftmap.h:49, from xmap.h:49, from nxmap_operator.h:48, from nxmap_operator.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ atomsf.cpp: In member function 'const clipper::ScatteringFactorsData& clipper::ScatteringFactors::operator[](const clipper::String&) const': atomsf.cpp:438:82: warning: control reaches end of non-void function [-Wreturn-type] 438 | default: Message::message(Message_fatal("unimplemented type")); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atomsf.cpp: In static member function 'static const clipper::ScatteringFactorsData& clipper::ScatteringFactorsTraits::sf(const clipper::String&, int) [with clipper::ScatteringFactorsType TYPE = clipper::SF_WAASMAIER_KIRFEL]': atomsf.cpp:406:1: warning: control reaches end of non-void function [-Wreturn-type] 406 | } | ^ atomsf.cpp: In static member function 'static const clipper::ScatteringFactorsData& clipper::ScatteringFactorsTraits::sf(const clipper::String&, int) [with clipper::ScatteringFactorsType TYPE = clipper::SF_ELECTRON]': atomsf.cpp:406:1: warning: control reaches end of non-void function [-Wreturn-type] In file included from /usr/include/c++/12/vector:70, from clipper_memory.h:50, from clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::Mat33sym<>; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::Mat33sym<>; _Alloc = std::allocator >]', inlined from 'void clipper::AtomShapeFn::init(const clipper::Coord_orth&, const clipper::String&, const clipper::U_aniso_orth&, clipper::ftype)' at atomsf.cpp:510:16: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'bool clipper::AtomShapeFn::rho_grad(const clipper::Coord_orth&, std::vector&) const' at atomsf.cpp:744:51: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'bool clipper::AtomShapeFn::rho_curv(const clipper::Coord_orth&, clipper::ftype&, std::vector&, clipper::Matrix&) const' at atomsf.cpp:676:51: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'bool clipper::AtomShapeFn::rho_grad(const clipper::Coord_orth&, clipper::ftype&, std::vector&) const' at atomsf.cpp:593:51: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'bool clipper::AtomShapeFn::rho_grad(const clipper::Coord_orth&, clipper::ftype&, std::vector&) const' at atomsf.cpp:618:51: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-derivs.lo `test -f 'derivs.cpp' || echo './'`derivs.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-ramachandran.lo `test -f 'ramachandran.cpp' || echo './'`ramachandran.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c derivs.cpp -fPIC -DPIC -o .libs/libclipper_core_la-derivs.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_instance.lo `test -f 'clipper_instance.cpp' || echo './'`clipper_instance.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ramachandran.cpp -fPIC -DPIC -o .libs/libclipper_core_la-ramachandran.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from derivs.h:49, from derivs.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from clipper_types.h:49, from ramachandran.h:49, from ramachandran.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_instance.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_instance.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from clipper_instance.h:49, from clipper_instance.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-fftmap.lo `test -f 'fftmap.cpp' || echo './'`fftmap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c fftmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-fftmap.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from fftmap.h:49, from fftmap.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/12/vector:70, from clipper_memory.h:50, from clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at clipper_types.h:406:27, inlined from 'std::vector clipper::Matrix::eigen(bool) [with T = double]' at clipper_types.h:614:10: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at clipper_types.h:406:27, inlined from 'clipper::RTop_orth::RTop_orth(const std::vector&, const std::vector&, const std::vector&)' at coords.cpp:186:27: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at clipper_types.h:406:27, inlined from 'clipper::RTop_orth::RTop_orth(const std::vector&, const std::vector&)' at coords.cpp:127:27: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from clipper_memory.h:50, from clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Prob_phi_2d::init(const int&)' at ramachandran.cpp:37255:15: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-resol_basisfn.lo `test -f 'resol_basisfn.cpp' || echo './'`resol_basisfn.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c resol_basisfn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_basisfn.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from resol_fn.h:48, from resol_basisfn.h:48, from resol_basisfn.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_memory.lo `test -f 'clipper_memory.cpp' || echo './'`clipper_memory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_memory.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_memory.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-fftmap_sparse.lo `test -f 'fftmap_sparse.cpp' || echo './'`fftmap_sparse.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c fftmap_sparse.cpp -fPIC -DPIC -o .libs/libclipper_core_la-fftmap_sparse.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-resol_fn.lo `test -f 'resol_fn.cpp' || echo './'`resol_fn.cpp In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from fftmap.h:49, from fftmap_sparse.h:49, from fftmap_sparse.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c resol_fn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_fn.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from resol_fn.h:48, from resol_fn.cpp:44: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_message.lo `test -f 'clipper_message.cpp' || echo './'`clipper_message.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_message.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_message.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_compute.lo `test -f 'hkl_compute.cpp' || echo './'`hkl_compute.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c hkl_compute.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_compute.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from hkl_datatypes.h:49, from hkl_compute.h:48, from hkl_compute.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-resol_targetfn.lo `test -f 'resol_targetfn.cpp' || echo './'`resol_targetfn.cpp In file included from /usr/include/c++/12/vector:70, from clipper_memory.h:50, from clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c resol_targetfn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_targetfn.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from resol_fn.h:48, from resol_basisfn.h:48, from resol_targetfn.h:48, from resol_targetfn.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at clipper_types.h:376:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at clipper_types.h:403:27, inlined from 'clipper::ResolutionFn::ResolutionFn(const clipper::HKL_info&, const clipper::BasisFn_base&, const clipper::TargetFn_base&, const std::vector&, clipper::ftype, bool)' at resol_fn.cpp:160:36: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at clipper_types.h:376:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at clipper_types.h:403:27, inlined from 'clipper::ResolutionFn::ResolutionFn(const clipper::HKL_info&, const clipper::BasisFn_base&, const clipper::TargetFn_base&, const std::vector&, clipper::ftype, bool)' at resol_fn.cpp:161:36: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'clipper::ResolutionFn::ResolutionFn(const clipper::HKL_info&, const clipper::BasisFn_base&, const clipper::TargetFn_base&, const std::vector&, clipper::ftype, bool)' at resol_fn.cpp:164:17: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at clipper_types.h:376:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at clipper_types.h:403:27, inlined from 'clipper::ResolutionFn_nonlinear::ResolutionFn_nonlinear(const clipper::HKL_info&, const clipper::BasisFn_base&, const clipper::TargetFn_base&, const std::vector&, clipper::ftype, bool)' at resol_fn.cpp:220:36: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at clipper_types.h:376:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at clipper_types.h:403:27, inlined from 'clipper::ResolutionFn_nonlinear::ResolutionFn_nonlinear(const clipper::HKL_info&, const clipper::BasisFn_base&, const clipper::TargetFn_base&, const std::vector&, clipper::ftype, bool)' at resol_fn.cpp:221:36: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'clipper::ResolutionFn_nonlinear::ResolutionFn_nonlinear(const clipper::HKL_info&, const clipper::BasisFn_base&, const clipper::TargetFn_base&, const std::vector&, clipper::ftype, bool)' at resol_fn.cpp:225:17: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_stats.lo `test -f 'clipper_stats.cpp' || echo './'`clipper_stats.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_stats.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_stats.o In file included from clipper_types.h:49, from clipper_stats.h:49, from clipper_stats.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_data.lo `test -f 'hkl_data.cpp' || echo './'`hkl_data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c hkl_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_data.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from hkl_data.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-rotation.lo `test -f 'rotation.cpp' || echo './'`rotation.cpp In file included from /usr/include/c++/12/vector:70, from clipper_memory.h:50, from clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Generic_ordinal::init(const clipper::Range&, int)' at clipper_stats.cpp:80:14: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Generic_ordinal::init(int)' at clipper_stats.cpp:153:14: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_test.lo `test -f 'clipper_test.cpp' || echo './'`clipper_test.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c rotation.cpp -fPIC -DPIC -o .libs/libclipper_core_la-rotation.o In file included from clipper_types.h:49, from rotation.h:49, from rotation.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_datatypes.lo `test -f 'hkl_datatypes.cpp' || echo './'`hkl_datatypes.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_test.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_test.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c hkl_datatypes.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_datatypes.o In file included from clipper_types.h:49, from clipper_test.h:49, from clipper_test.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from hkl_datatypes.h:49, from hkl_datatypes.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-spacegroup.lo `test -f 'spacegroup.cpp' || echo './'`spacegroup.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_types.lo `test -f 'clipper_types.cpp' || echo './'`clipper_types.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c spacegroup.cpp -fPIC -DPIC -o .libs/libclipper_core_la-spacegroup.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_types.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_types.o In file included from clipper_types.h:49, from symop.h:49, from spacegroup.h:50, from spacegroup.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from clipper_types.h:49, from clipper_types.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_info.lo `test -f 'hkl_info.cpp' || echo './'`hkl_info.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c hkl_info.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_info.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_info.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/12/vector:70, from clipper_memory.h:50, from clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::Vec3; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:444:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 444 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::Symop; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:444:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-spacegroup_data.lo `test -f 'spacegroup_data.cpp' || echo './'`spacegroup_data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c spacegroup_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-spacegroup_data.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_util.lo `test -f 'clipper_util.cpp' || echo './'`clipper_util.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_util.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_util.o In file included from clipper_util.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/12/algorithm:61, from spacegroup.cpp:47: /usr/include/c++/12/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1802 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/include/c++/12/bits/stl_algo.h:60: /usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = clipper::Vec3; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1908 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_lookup.lo `test -f 'hkl_lookup.cpp' || echo './'`hkl_lookup.cpp In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::Vec3; _Alloc = std::allocator >]', inlined from 'clipper::Vec3 clipper::real_asu(const Spgr_descr::Symop_codes&)' at spacegroup.cpp:758:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = clipper::Compare_grid]' at /usr/include/c++/12/bits/stl_algo.h:4853:18, inlined from 'clipper::Vec3 clipper::real_asu(const Spgr_descr::Symop_codes&)' at spacegroup.cpp:759:12: /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1937 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1938 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1939 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = clipper::Compare_grid]' at /usr/include/c++/12/bits/stl_algo.h:4853:18, inlined from 'clipper::Vec3 clipper::real_asu(const Spgr_descr::Symop_codes&)' at spacegroup.cpp:759:12: /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1854 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from clipper_memory.h:50, from clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c hkl_lookup.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_lookup.o In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at clipper_types.h:406:27: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at clipper_types.h:376:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at clipper_types.h:403:27: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_lookup.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::Symop; _Alloc = std::allocator]', inlined from 'clipper::Spgr_cacheobj::Spgr_cacheobj(const Key&)' at spacegroup.cpp:827:21: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at clipper_types.h:406:27, inlined from 'std::vector clipper::Matrix::eigen(bool) [with T = double]' at clipper_types.h:614:10: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-symop.lo `test -f 'symop.cpp' || echo './'`symop.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c symop.cpp -fPIC -DPIC -o .libs/libclipper_core_la-symop.o In file included from clipper_types.h:49, from symop.h:49, from symop.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-container.lo `test -f 'container.cpp' || echo './'`container.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_operators.lo `test -f 'hkl_operators.cpp' || echo './'`hkl_operators.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-container_hkl.lo `test -f 'container_hkl.cpp' || echo './'`container_hkl.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c container.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c hkl_operators.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_operators.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from container.h:49, from container.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c container_hkl.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_hkl.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from hkl_datatypes.h:49, from hkl_operators.h:48, from hkl_operators.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from container.h:49, from container_types.h:49, from container_hkl.h:49, from container_hkl.cpp:42: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-map_interp.lo `test -f 'map_interp.cpp' || echo './'`map_interp.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c map_interp.cpp -fPIC -DPIC -o .libs/libclipper_core_la-map_interp.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-container_map.lo `test -f 'container_map.cpp' || echo './'`container_map.cpp In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from derivs.h:49, from map_interp.h:48, from map_interp.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c container_map.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_map.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from container.h:49, from container_types.h:49, from container_map.h:49, from container_map.cpp:42: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-map_utils.lo `test -f 'map_utils.cpp' || echo './'`map_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c map_utils.cpp -fPIC -DPIC -o .libs/libclipper_core_la-map_utils.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-xmap.lo `test -f 'xmap.cpp' || echo './'`xmap.cpp In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from derivs.h:49, from map_utils.h:49, from map_utils.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c xmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-xmap.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from fftmap.h:49, from xmap.h:49, from xmap.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-container_types.lo `test -f 'container_types.cpp' || echo './'`container_types.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c container_types.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_types.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from container.h:49, from container_types.h:49, from container_types.cpp:42: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-nxmap.lo `test -f 'nxmap.cpp' || echo './'`nxmap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c nxmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-nxmap.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from derivs.h:49, from nxmap.h:49, from nxmap.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_thread.lo `test -f 'clipper_thread.cpp' || echo './'`clipper_thread.cpp In file included from /usr/include/c++/12/vector:70, from clipper_memory.h:50, from clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'clipper::LogPhaseProb::LogPhaseProb(const clipper::HKL_class&) [with int N = 72]' at hkl_operators.cpp:241:13: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'clipper::LogPhaseProb::LogPhaseProb(const clipper::HKL_class&) [with int N = 72]' at hkl_operators.cpp:245:13: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'clipper::LogPhaseProb::LogPhaseProb(const clipper::HKL_class&) [with int N = 360]' at hkl_operators.cpp:241:13: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'clipper::LogPhaseProb::LogPhaseProb(const clipper::HKL_class&) [with int N = 360]' at hkl_operators.cpp:245:13: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_thread.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_thread.o In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'clipper::LogPhaseProb::LogPhaseProb(const clipper::HKL_class&) [with int N = 180]' at hkl_operators.cpp:241:13: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'clipper::LogPhaseProb::LogPhaseProb(const clipper::HKL_class&) [with int N = 180]' at hkl_operators.cpp:245:13: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'clipper::LogPhaseProb::LogPhaseProb(const clipper::HKL_class&) [with int N = 24]' at hkl_operators.cpp:241:13: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'clipper::LogPhaseProb::LogPhaseProb(const clipper::HKL_class&) [with int N = 24]' at hkl_operators.cpp:245:13: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-test_core.lo `test -f 'test_core.cpp' || echo './'`test_core.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-test_data.lo `test -f 'test_data.cpp' || echo './'`test_data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c test_core.cpp -fPIC -DPIC -o .libs/libclipper_core_la-test_core.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c test_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-test_data.o In file included from clipper_types.h:49, from clipper_test.h:49, from test_core.h:49, from test_core.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]', inlined from 'void clipper::HKL_data::update() [with T = clipper::datatypes::F_phi]' at hkl_data.h:413:18: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from hkl_datatypes.h:49, from test_data.h:49, from test_data.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::ABCD; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::ABCD; _Alloc = std::allocator >]', inlined from 'void clipper::HKL_data::update() [with T = clipper::datatypes::ABCD]' at hkl_data.h:413:18: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:63, from clipper_memory.h:50, from clipper_types.h:50: /usr/include/c++/12/bits/stl_uninitialized.h: In function '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*]': /usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/12/vector:70: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::Atom; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:444:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 444 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::Atom; _Alloc = std::allocator]', inlined from 'clipper::data::Test_data::Test_data()' at test_data.cpp:2555:16: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*]' at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*; _Tp = clipper::Atom]' at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::Atom; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:601:31, inlined from 'clipper::Atom_list::Atom_list(const std::vector&)' at coords.h:668:74, inlined from 'clipper::data::Test_data::Test_data()' at test_data.cpp:2557:11: /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*]' at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*; _Tp = clipper::Atom]' at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, inlined from 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = clipper::Atom; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1617:35, inlined from 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::Atom; _Alloc = std::allocator]' at /usr/include/c++/12/bits/vector.tcc:232:44, inlined from 'clipper::Atom_list& clipper::Atom_list::operator=(const clipper::Atom_list&)' at coords.h:662:9, inlined from 'clipper::data::Test_data::Test_data()' at test_data.cpp:2557:24: /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from clipper_memory.h:50, from clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]' at xmap.h:364:156: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]' at xmap.h:364:156, inlined from 'clipper::Xmap::Xmap(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]' at xmap.h:362:97: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algo.h:60, from /usr/include/c++/12/algorithm:61, from test_core.cpp:52: /usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1908 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1802 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/12/vector:70, from clipper_memory.h:50, from clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:444:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 444 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'bool clipper::Test_core::operator()()' at test_core.cpp:145:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18, inlined from 'bool clipper::Test_core::operator()()' at test_core.cpp:152:14: /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1937 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1938 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1939 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18, inlined from 'bool clipper::Test_core::operator()()' at test_core.cpp:152:14: /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1854 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at resol_fn.h:86:46, inlined from 'clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)' at resol_basisfn.h:136:120, inlined from 'bool clipper::Test_core::operator()()' at test_core.cpp:160:38: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at clipper_types.h:376:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at clipper_types.h:403:27, inlined from 'bool clipper::Test_core::operator()()' at test_core.cpp:212:29: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at clipper_types.h:376:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at clipper_types.h:403:27, inlined from 'bool clipper::Test_core::operator()()' at test_core.cpp:260:24: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o libclipper-core.la -rpath /usr/lib/arm-linux-gnueabihf libclipper_core_la-atomsf.lo libclipper_core_la-coords.lo libclipper_core_la-nxmap_operator.lo libclipper_core_la-cell.lo libclipper_core_la-derivs.lo libclipper_core_la-ramachandran.lo libclipper_core_la-clipper_instance.lo libclipper_core_la-fftmap.lo libclipper_core_la-resol_basisfn.lo libclipper_core_la-clipper_memory.lo libclipper_core_la-fftmap_sparse.lo libclipper_core_la-resol_fn.lo libclipper_core_la-clipper_message.lo libclipper_core_la-hkl_compute.lo libclipper_core_la-resol_targetfn.lo libclipper_core_la-clipper_stats.lo libclipper_core_la-hkl_data.lo libclipper_core_la-rotation.lo libclipper_core_la-clipper_test.lo libclipper_core_la-hkl_datatypes.lo libclipper_core_la-spacegroup.lo libclipper_core_la-clipper_types.lo libclipper_core_la-hkl_info.lo libclipper_core_la-spacegroup_data.lo libclipper_core_la-clipper_util.lo libclipper_core_la-hkl_lookup.lo libclipper_core_la-symop.lo libclipper_core_la-container.lo libclipper_core_la-hkl_operators.lo libclipper_core_la-container_hkl.lo libclipper_core_la-map_interp.lo libclipper_core_la-container_map.lo libclipper_core_la-map_utils.lo libclipper_core_la-xmap.lo libclipper_core_la-container_types.lo libclipper_core_la-nxmap.lo libclipper_core_la-clipper_thread.lo libclipper_core_la-test_core.lo libclipper_core_la-test_data.lo -lsrfftw -lsfftw -lpthread -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o .libs/libclipper_core_la-atomsf.o .libs/libclipper_core_la-coords.o .libs/libclipper_core_la-nxmap_operator.o .libs/libclipper_core_la-cell.o .libs/libclipper_core_la-derivs.o .libs/libclipper_core_la-ramachandran.o .libs/libclipper_core_la-clipper_instance.o .libs/libclipper_core_la-fftmap.o .libs/libclipper_core_la-resol_basisfn.o .libs/libclipper_core_la-clipper_memory.o .libs/libclipper_core_la-fftmap_sparse.o .libs/libclipper_core_la-resol_fn.o .libs/libclipper_core_la-clipper_message.o .libs/libclipper_core_la-hkl_compute.o .libs/libclipper_core_la-resol_targetfn.o .libs/libclipper_core_la-clipper_stats.o .libs/libclipper_core_la-hkl_data.o .libs/libclipper_core_la-rotation.o .libs/libclipper_core_la-clipper_test.o .libs/libclipper_core_la-hkl_datatypes.o .libs/libclipper_core_la-spacegroup.o .libs/libclipper_core_la-clipper_types.o .libs/libclipper_core_la-hkl_info.o .libs/libclipper_core_la-spacegroup_data.o .libs/libclipper_core_la-clipper_util.o .libs/libclipper_core_la-hkl_lookup.o .libs/libclipper_core_la-symop.o .libs/libclipper_core_la-container.o .libs/libclipper_core_la-hkl_operators.o .libs/libclipper_core_la-container_hkl.o .libs/libclipper_core_la-map_interp.o .libs/libclipper_core_la-container_map.o .libs/libclipper_core_la-map_utils.o .libs/libclipper_core_la-xmap.o .libs/libclipper_core_la-container_types.o .libs/libclipper_core_la-nxmap.o .libs/libclipper_core_la-clipper_thread.o .libs/libclipper_core_la-test_core.o .libs/libclipper_core_la-test_data.o -lsrfftw -lsfftw -lpthread -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-core.so.2 -o .libs/libclipper-core.so.2.0.1 libtool: link: (cd ".libs" && rm -f "libclipper-core.so.2" && ln -s "libclipper-core.so.2.0.1" "libclipper-core.so.2") libtool: link: (cd ".libs" && rm -f "libclipper-core.so" && ln -s "libclipper-core.so.2.0.1" "libclipper-core.so") libtool: link: ( cd ".libs" && rm -f "libclipper-core.la" && ln -s "../libclipper-core.la" "libclipper-core.la" ) make[4]: Leaving directory '/build/clipper-2.1.20201109/clipper/core' Making all in contrib make[4]: Entering directory '/build/clipper-2.1.20201109/clipper/contrib' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o convolution_search.lo convolution_search.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o sfcalc.lo sfcalc.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o edcalc.lo edcalc.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o sfcalc_obs.lo sfcalc_obs.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c sfcalc.cpp -fPIC -DPIC -o .libs/sfcalc.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c sfcalc_obs.cpp -fPIC -DPIC -o .libs/sfcalc_obs.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c edcalc.cpp -fPIC -DPIC -o .libs/edcalc.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c convolution_search.cpp -fPIC -DPIC -o .libs/convolution_search.o In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from convolution_search.h:50, from convolution_search.cpp:42: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from edcalc.h:50, from edcalc.cpp:43: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfcalc_obs.h:49, from sfcalc_obs.cpp:43: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfcalc.h:50, from sfcalc.cpp:43: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/12/vector:70, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::NXmap::init(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]' at ../core/nxmap.h:367:63, inlined from 'clipper::NXmap::NXmap(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]' at ../core/nxmap.h:349:11, inlined from 'bool clipper::Convolution_search_slow::operator()(clipper::Xmap&, const clipper::NXmap&, const clipper::NX_operator&) const [with T = double]' at convolution_search.cpp:81:12: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_info&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:134:114: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:63: /usr/include/c++/12/bits/stl_uninitialized.h: In function '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*]': /usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o fffear.lo fffear.cpp In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*]' at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*; _Tp = clipper::Atom]' at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::Atom; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:601:31, inlined from 'clipper::Atom_list::Atom_list(const clipper::Atom_list&)' at ../core/coords.h:662:9, inlined from 'bool clipper::SFcalc_obs_bulk::operator()(clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::Atom_list&) [with T = float]' at sfcalc_obs.cpp:59:13: /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c fffear.cpp -fPIC -DPIC -o .libs/fffear.o In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from fffear.h:50, from fffear.cpp:42: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]', inlined from 'void clipper::HKL_data::update() [with T = clipper::datatypes::F_phi]' at ../core/hkl_data.h:413:18: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o sfscale.lo sfscale.cpp In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*]' at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*; _Tp = clipper::Atom]' at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::Atom; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:601:31, inlined from 'clipper::Atom_list::Atom_list(const clipper::Atom_list&)' at ../core/coords.h:662:9, inlined from 'bool clipper::SFcalc_obs_bulk::operator()(clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::Atom_list&) [with T = double]' at sfcalc_obs.cpp:59:13: /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c sfscale.cpp -fPIC -DPIC -o .libs/sfscale.o In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfscale.h:49, from sfscale.cpp:43: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o function_object_bases.lo function_object_bases.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o sfweight.lo sfweight.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c function_object_bases.cpp -fPIC -DPIC -o .libs/function_object_bases.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c sfweight.cpp -fPIC -DPIC -o .libs/sfweight.o In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from function_object_bases.cpp:43: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfweight.h:49, from sfweight.cpp:43: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o mapfilter.lo mapfilter.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c mapfilter.cpp -fPIC -DPIC -o .libs/mapfilter.o In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from mapfilter.h:50, from mapfilter.cpp:43: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/12/vector:70, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::NXmap::init(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]' at ../core/nxmap.h:367:63, inlined from 'clipper::NXmap::NXmap(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]' at ../core/nxmap.h:349:11: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'std::vector clipper::Matrix::eigen(bool) [with T = double]' at ../core/clipper_types.h:614:10: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_log_aniso_gaussian::BasisFn_log_aniso_gaussian()' at ../core/resol_basisfn.h:233:52: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::NXmap::init(const clipper::Grid&, const clipper::RTop<>&) [with T = double]' at ../core/nxmap.h:357:48, inlined from 'bool clipper::MapFilter_fft::operator()(clipper::NXmap&, const clipper::NXmap&) const [with T = double]' at mapfilter.cpp:317:14: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o skeleton.lo skeleton.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c skeleton.cpp -fPIC -DPIC -o .libs/skeleton.o In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_binner::BasisFn_binner(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:82:120, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_binner; T = float]' at sfscale.cpp:181:7: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at ../core/clipper_types.h:376:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at ../core/clipper_types.h:403:27, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_binner; T = float]' at sfscale.cpp:228:17: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from skeleton.h:50, from skeleton.cpp:42: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]' at ../core/xmap.h:364:156, inlined from 'bool clipper::MapFilter_slow::operator()(clipper::Xmap&, const clipper::Xmap&) const [with T = double]' at mapfilter.cpp:74:14: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::NXmap::init(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]' at ../core/nxmap.h:367:63, inlined from 'clipper::NXmap::NXmap(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]' at ../core/nxmap.h:349:11, inlined from 'bool clipper::MapFilter_slow::operator()(clipper::Xmap&, const clipper::Xmap&) const [with T = double]' at mapfilter.cpp:91:12: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]' at ../core/xmap.h:364:156, inlined from 'bool clipper::MapFilter_fft::operator()(clipper::Xmap&, const clipper::Xmap&) const [with T = double]' at mapfilter.cpp:206:14: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_linear::BasisFn_linear(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:109:120, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_linear; T = float]' at sfscale.cpp:181:7: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at ../core/clipper_types.h:376:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at ../core/clipper_types.h:403:27, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_linear; T = float]' at sfscale.cpp:228:17: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o originmatch.lo originmatch.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c originmatch.cpp -fPIC -DPIC -o .libs/originmatch.o In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from originmatch.h:49, from originmatch.cpp:43: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:136:120, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_spline; T = float]' at sfscale.cpp:181:7: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at ../core/clipper_types.h:376:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at ../core/clipper_types.h:403:27, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_spline; T = float]' at sfscale.cpp:228:17: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_log_aniso_gaussian::BasisFn_log_aniso_gaussian()' at ../core/resol_basisfn.h:233:52, inlined from 'bool clipper::SFscale_aniso::operator()(clipper::HKL_data >&, const clipper::HKL_data >&) [with T = float]' at sfscale.cpp:68:30: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_log_aniso_gaussian::BasisFn_log_aniso_gaussian()' at ../core/resol_basisfn.h:233:52, inlined from 'bool clipper::SFscale_aniso::operator()(clipper::HKL_data >&, const clipper::HKL_data >&) [with T = float]' at sfscale.cpp:99:30: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::SFweight_spline::HLterms; _Alloc = std::allocator::HLterms>]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector::HLterms, std::allocator::HLterms> >::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::SFweight_spline::HLterms; _Alloc = std::allocator::HLterms>]', inlined from 'void clipper::SFweight_spline::init(int, int, int) [with T = float]' at sfweight.cpp:176:17: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::HLterms*, std::vector::HLterms, std::allocator::HLterms> > >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_binner::BasisFn_binner(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:82:120, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_binner; T = float]' at sfscale.cpp:181:7: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at ../core/clipper_types.h:376:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at ../core/clipper_types.h:403:27, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_binner; T = float]' at sfscale.cpp:228:17: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::SFweight_spline::HLterms; _Alloc = std::allocator::HLterms>]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector::HLterms, std::allocator::HLterms> >::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::SFweight_spline::HLterms; _Alloc = std::allocator::HLterms>]', inlined from 'void clipper::SFweight_spline::init(int, int, int) [with T = double]' at sfweight.cpp:176:17: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::HLterms*, std::vector::HLterms, std::allocator::HLterms> > >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:136:120: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_linear::BasisFn_linear(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:109:120, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_linear; T = float]' at sfscale.cpp:181:7: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at ../core/clipper_types.h:376:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at ../core/clipper_types.h:403:27, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_linear; T = float]' at sfscale.cpp:228:17: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::ABCD; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::ABCD; _Alloc = std::allocator >]', inlined from 'void clipper::HKL_data::update() [with T = clipper::datatypes::ABCD]' at ../core/hkl_data.h:413:18: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:136:120, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_spline; T = float]' at sfscale.cpp:181:7: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at ../core/clipper_types.h:376:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at ../core/clipper_types.h:403:27, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_spline; T = float]' at sfscale.cpp:228:17: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::F_sigF; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::F_sigF; _Alloc = std::allocator >]', inlined from 'void clipper::HKL_data::update() [with T = clipper::datatypes::F_sigF]' at ../core/hkl_data.h:413:18: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = float]' at sfweight.cpp:278:19: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = float]' at sfweight.cpp:279:19: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_binner::BasisFn_binner(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:82:120, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_binner; T = double]' at sfscale.cpp:181:7: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at ../core/clipper_types.h:376:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at ../core/clipper_types.h:403:27, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_binner; T = double]' at sfscale.cpp:228:17: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_linear::BasisFn_linear(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:109:120, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_linear; T = double]' at sfscale.cpp:181:7: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at ../core/clipper_types.h:376:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at ../core/clipper_types.h:403:27, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_linear; T = double]' at sfscale.cpp:228:17: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:136:120, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_spline; T = double]' at sfscale.cpp:181:7: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at ../core/clipper_types.h:376:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at ../core/clipper_types.h:403:27, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_spline; T = double]' at sfscale.cpp:228:17: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o test_contrib.lo test_contrib.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c test_contrib.cpp -fPIC -DPIC -o .libs/test_contrib.o In file included from ../core/clipper_types.h:49, from ../core/clipper_test.h:49, from test_contrib.h:49, from test_contrib.cpp:43: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = float]' at sfweight.cpp:278:19: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = float]' at sfweight.cpp:279:19: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]', inlined from 'void clipper::HKL_data::update() [with T = clipper::datatypes::F_phi]' at ../core/hkl_data.h:413:18: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_log_aniso_gaussian::BasisFn_log_aniso_gaussian()' at ../core/resol_basisfn.h:233:52, inlined from 'bool clipper::SFscale_aniso::operator()(clipper::HKL_data >&, const clipper::HKL_data >&) [with T = double]' at sfscale.cpp:68:30: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_log_aniso_gaussian::BasisFn_log_aniso_gaussian()' at ../core/resol_basisfn.h:233:52, inlined from 'bool clipper::SFscale_aniso::operator()(clipper::HKL_data >&, const clipper::HKL_data >&) [with T = double]' at sfscale.cpp:99:30: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::I_sigI; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::I_sigI; _Alloc = std::allocator >]', inlined from 'void clipper::HKL_data::update() [with T = clipper::datatypes::I_sigI]' at ../core/hkl_data.h:413:18: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_binner::BasisFn_binner(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:82:120, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_binner; T = double]' at sfscale.cpp:181:7: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at ../core/clipper_types.h:376:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at ../core/clipper_types.h:403:27, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_binner; T = double]' at sfscale.cpp:228:17: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::E_sigE; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::E_sigE; _Alloc = std::allocator >]', inlined from 'void clipper::HKL_data::update() [with T = clipper::datatypes::E_sigE]' at ../core/hkl_data.h:413:18: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::F_sigF; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::F_sigF; _Alloc = std::allocator >]', inlined from 'void clipper::HKL_data::update() [with T = clipper::datatypes::F_sigF]' at ../core/hkl_data.h:413:18: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_linear::BasisFn_linear(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:109:120, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_linear; T = double]' at sfscale.cpp:181:7: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at ../core/clipper_types.h:376:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at ../core/clipper_types.h:403:27, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_linear; T = double]' at sfscale.cpp:228:17: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]' at sfweight.cpp:222:18: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]' at sfweight.cpp:223:18: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]' at sfweight.cpp:224:17: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]' at sfweight.cpp:225:17: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]' at sfweight.cpp:278:19: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]' at sfweight.cpp:279:19: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:136:120, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_spline; T = double]' at sfscale.cpp:181:7: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at ../core/clipper_types.h:376:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at ../core/clipper_types.h:403:27, inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_spline; T = double]' at sfscale.cpp:228:17: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = double]' at sfweight.cpp:222:18: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = double]' at sfweight.cpp:223:18: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = double]' at sfweight.cpp:224:17: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = double]' at sfweight.cpp:225:17: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = double]' at sfweight.cpp:278:19: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = double]' at sfweight.cpp:279:19: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]', inlined from 'void clipper::HKL_data::update() [with T = clipper::datatypes::F_phi]' at ../core/hkl_data.h:413:18: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::Atom; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:444:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 444 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::Atom; _Alloc = std::allocator]', inlined from 'bool clipper::Test_contrib::operator()()' at test_contrib.cpp:98:20: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::Atom; _Alloc = std::allocator]', inlined from 'bool clipper::Test_contrib::operator()()' at test_contrib.cpp:101:20: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::Atom; _Alloc = std::allocator]', inlined from 'bool clipper::Test_contrib::operator()()' at test_contrib.cpp:104:20: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o libclipper-contrib.la -rpath /usr/lib/arm-linux-gnueabihf convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -Wl,-rpath -Wl,/build/clipper-2.1.20201109/clipper/core/.libs ../core/.libs/libclipper-core.so -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1 libtool: link: (cd ".libs" && rm -f "libclipper-contrib.so.2" && ln -s "libclipper-contrib.so.2.0.1" "libclipper-contrib.so.2") libtool: link: (cd ".libs" && rm -f "libclipper-contrib.so" && ln -s "libclipper-contrib.so.2.0.1" "libclipper-contrib.so") libtool: link: ( cd ".libs" && rm -f "libclipper-contrib.la" && ln -s "../libclipper-contrib.la" "libclipper-contrib.la" ) make[4]: Leaving directory '/build/clipper-2.1.20201109/clipper/contrib' make[4]: Entering directory '/build/clipper-2.1.20201109/clipper' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o mmdb/clipper_mmdb.lo mmdb/clipper_mmdb.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol.lo minimol/minimol.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/container_minimol.lo minimol/container_minimol.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol_data.lo minimol/minimol_data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol_data.cpp -fPIC -DPIC -o minimol/.libs/minimol_data.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol.cpp -fPIC -DPIC -o minimol/.libs/minimol.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/container_minimol.cpp -fPIC -DPIC -o minimol/.libs/container_minimol.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c mmdb/clipper_mmdb.cpp -fPIC -DPIC -o mmdb/.libs/clipper_mmdb.o In file included from minimol/../core/clipper_types.h:49, from minimol/../core/cell.h:50, from minimol/../core/coords.h:49, from minimol/minimol.h:49, from minimol/minimol.cpp:43: minimol/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from minimol/../core/clipper_types.h:49, from minimol/../core/cell.h:50, from minimol/../core/coords.h:49, from minimol/../core/container.h:49, from minimol/../core/container_types.h:49, from minimol/container_minimol.h:49, from minimol/container_minimol.cpp:42: minimol/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from mmdb/../core/clipper_types.h:49, from mmdb/../core/cell.h:50, from mmdb/../core/coords.h:49, from mmdb/clipper_mmdb.h:49, from mmdb/clipper_mmdb.cpp:42: mmdb/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol_io.lo minimol/minimol_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol_io.cpp -fPIC -DPIC -o minimol/.libs/minimol_io.o In file included from minimol/../mmdb/../core/clipper_types.h:49, from minimol/../mmdb/../core/cell.h:50, from minimol/../mmdb/../core/coords.h:49, from minimol/../mmdb/clipper_mmdb.h:49, from minimol/minimol_io.h:49, from minimol/minimol_io.cpp:42: minimol/../mmdb/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol_seq.lo minimol/minimol_seq.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol_seq.cpp -fPIC -DPIC -o minimol/.libs/minimol_seq.o In file included from minimol/../core/clipper_types.h:49, from minimol/../core/cell.h:50, from minimol/../core/coords.h:49, from minimol/minimol.h:49, from minimol/minimol_seq.h:49, from minimol/minimol_seq.cpp:42: minimol/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/12/vector:70, from mmdb/../core/clipper_memory.h:50, from mmdb/../core/clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::Atom; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:444:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 444 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::Atom; _Alloc = std::allocator]', inlined from 'clipper::MMDBAtom_list::MMDBAtom_list(clipper::mmdb::PPCAtom, int)' at mmdb/clipper_mmdb.cpp:330:14: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol_utils.lo minimol/minimol_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol_utils.cpp -fPIC -DPIC -o minimol/.libs/minimol_utils.o In file included from minimol/../core/clipper_types.h:49, from minimol/../core/cell.h:50, from minimol/../core/coords.h:49, from minimol/minimol.h:49, from minimol/minimol_utils.h:49, from minimol/minimol_utils.cpp:43: minimol/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o phs/phs_io.lo phs/phs_io.cpp In file included from /usr/include/c++/12/vector:70, from minimol/../core/clipper_memory.h:50, from minimol/../core/clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = clipper::MAtom; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 175 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:63: /usr/include/c++/12/bits/stl_uninitialized.h: In function '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]': /usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c phs/phs_io.cpp -fPIC -DPIC -o phs/.libs/phs_io.o In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]' at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]' at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:601:31, inlined from 'clipper::MMonomer::MMonomer(const clipper::MMonomer&)' at minimol/minimol.h:136:8: /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]' at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]' at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:601:31, inlined from 'clipper::MMonomer::MMonomer(const clipper::MMonomer&)' at minimol/minimol.h:136:8, inlined from 'void std::_Construct(_T1*, const _T2&) [with _T1 = clipper::MMonomer; _T2 = clipper::MMonomer]' at /usr/include/c++/12/bits/stl_construct.h:128:7, inlined from '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MMonomer*]' at /usr/include/c++/12/bits/stl_uninitialized.h:120:21: /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from phs/../core/clipper_types.h:49, from phs/../core/cell.h:50, from phs/../core/coords.h:49, from phs/../core/hkl_lookup.h:49, from phs/../core/hkl_info.h:49, from phs/../core/hkl_data.h:49, from phs/../core/hkl_datatypes.h:49, from phs/phs_io.h:49, from phs/phs_io.cpp:42: phs/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:444:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 444 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]', inlined from 'void clipper::MMonomer::insert(const clipper::MAtom&, int)' at minimol/minimol.cpp:241:35: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(iterator, const value_type&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]', inlined from 'void clipper::MMonomer::insert(const clipper::MAtom&, int)' at minimol/minimol.cpp:242:22, inlined from 'void clipper::MMonomer::insert(const clipper::MAtom&, int)' at minimol/minimol.cpp:239:6: /usr/include/c++/12/bits/vector.tcc:166:26: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 166 | _M_realloc_insert(__position, __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(iterator) [with _Tp = clipper::MAtom; _Alloc = std::allocator]', inlined from 'void clipper::MMonomer::protein_mainchain_build_carbonyl_oxygen(const clipper::MMonomer&)' at minimol/minimol.cpp:735:31: /usr/include/c++/12/bits/stl_vector.h:1533:24: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 1533 | { return _M_erase(__position); } | ~~~~~~~~^~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(iterator) [with _Tp = clipper::MAtom; _Alloc = std::allocator]', inlined from 'void clipper::MMonomer::protein_mainchain_build_carbonyl_oxygen()' at minimol/minimol.cpp:767:31: /usr/include/c++/12/bits/stl_vector.h:1533:24: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 1533 | { return _M_erase(__position); } | ~~~~~~~~^~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(iterator) [with _Tp = clipper::MAtom; _Alloc = std::allocator]', inlined from 'clipper::ftype clipper::MMonomer::protein_sidechain_build_rotamer(const int&, TYPE)' at minimol/minimol.cpp:833:20: /usr/include/c++/12/bits/stl_vector.h:1533:24: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 1533 | { return _M_erase(__position); } | ~~~~~~~~^~~~~~~~~~~~ In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]' at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]' at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, inlined from 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = clipper::MAtom; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1617:35, inlined from 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]' at /usr/include/c++/12/bits/vector.tcc:232:44: /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o cif/cif_data_io.lo cif/cif_data_io.cpp In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]' at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]' at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:601:31, inlined from 'clipper::MMonomer::MMonomer(const clipper::MMonomer&)' at minimol/minimol.h:136:8, inlined from 'void std::_Construct(_T1*, const _T2&) [with _T1 = clipper::MMonomer; _T2 = clipper::MMonomer]' at /usr/include/c++/12/bits/stl_construct.h:128:7, inlined from '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = clipper::MMonomer*; _ForwardIterator = clipper::MMonomer*]' at /usr/include/c++/12/bits/stl_uninitialized.h:120:21: /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c cif/cif_data_io.cpp -fPIC -DPIC -o cif/.libs/cif_data_io.o In file included from /usr/include/c++/12/vector:63, from minimol/../mmdb/../core/clipper_memory.h:50, from minimol/../mmdb/../core/clipper_types.h:50: /usr/include/c++/12/bits/stl_uninitialized.h: In function '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]': /usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from cif/../core/clipper_types.h:49, from cif/../core/cell.h:50, from cif/../core/coords.h:49, from cif/../core/hkl_lookup.h:49, from cif/../core/hkl_info.h:49, from cif/../core/hkl_data.h:49, from cif/../core/hkl_datatypes.h:49, from cif/cif_data_io.h:48, from cif/cif_data_io.cpp:44: cif/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]' at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]' at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, inlined from 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = clipper::MAtom; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1617:35, inlined from 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]' at /usr/include/c++/12/bits/vector.tcc:232:44: /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]' at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]' at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:601:31, inlined from 'clipper::MMonomer::MMonomer(const clipper::MMonomer&)' at minimol/minimol.h:136:8, inlined from 'void std::_Construct(_T1*, const _T2&) [with _T1 = clipper::MMonomer; _T2 = clipper::MMonomer]' at /usr/include/c++/12/bits/stl_construct.h:128:7, inlined from '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MMonomer*]' at /usr/include/c++/12/bits/stl_uninitialized.h:120:21: /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]' at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]' at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:601:31, inlined from 'clipper::MMonomer::MMonomer(const clipper::MMonomer&)' at minimol/minimol.h:136:8, inlined from 'void std::_Construct(_T1*, const _T2&) [with _T1 = clipper::MMonomer; _T2 = clipper::MMonomer]' at /usr/include/c++/12/bits/stl_construct.h:128:7, inlined from '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = clipper::MMonomer*; _ForwardIterator = clipper::MMonomer*]' at /usr/include/c++/12/bits/stl_uninitialized.h:120:21, inlined from 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = clipper::MMonomer*; _ForwardIterator = clipper::MMonomer*; bool _TrivialValueTypes = false]' at /usr/include/c++/12/bits/stl_uninitialized.h:137:32, inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = clipper::MMonomer*; _ForwardIterator = clipper::MMonomer*]' at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = clipper::MMonomer*; _ForwardIterator = clipper::MMonomer*; _Tp = clipper::MMonomer]' at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, inlined from 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MMonomer; _Alloc = std::allocator]' at /usr/include/c++/12/bits/vector.tcc:251:35: /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::MAtom; _Alloc = std::allocator]', inlined from 'clipper::MMonomer& clipper::MMonomer::copy(const clipper::MMonomer&, const clipper::MM::COPY&)' at minimol/minimol.cpp:291:19: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]' at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]' at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:601:31, inlined from 'clipper::MMonomer::MMonomer(const clipper::MMonomer&)' at minimol/minimol.h:136:8, inlined from 'void std::_Construct(_T1*, const _T2&) [with _T1 = clipper::MMonomer; _T2 = clipper::MMonomer]' at /usr/include/c++/12/bits/stl_construct.h:128:7, inlined from '_ForwardIterator std::__do_uninit_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = clipper::MMonomer*; _Size = unsigned int; _Tp = clipper::MMonomer]' at /usr/include/c++/12/bits/stl_uninitialized.h:267:21: /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_types.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_mtz_types.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_types.o In file included from ccp4/../core/clipper_types.h:49, from ccp4/../core/cell.h:50, from ccp4/../core/coords.h:49, from ccp4/../core/container.h:49, from ccp4/../core/container_types.h:49, from ccp4/../core/container_hkl.h:49, from ccp4/ccp4_mtz_types.h:49, from ccp4/ccp4_mtz_types.cpp:43: ccp4/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ccp4/ccp4_mtz_io.lo ccp4/ccp4_mtz_io.cpp In file included from /usr/include/c++/12/vector:70, from cif/../core/clipper_memory.h:50, from cif/../core/clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:444:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 444 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ccp4/ccp4_map_io.lo ccp4/ccp4_map_io.cpp In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'int clipper::CIFfile::set_cell_symm_reso_by_kludge(std::string)' at cif/cif_data_io.cpp:909:22: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_mtz_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_io.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_map_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_map_io.o In file included from ccp4/../core/clipper_types.h:49, from ccp4/../core/cell.h:50, from ccp4/../core/coords.h:49, from ccp4/../core/container.h:49, from ccp4/../core/container_types.h:49, from ccp4/../core/container_map.h:49, from ccp4/ccp4_map_io.h:49, from ccp4/ccp4_map_io.cpp:43: ccp4/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from ccp4/../core/clipper_types.h:49, from ccp4/../core/cell.h:50, from ccp4/../core/coords.h:49, from ccp4/../core/container.h:49, from ccp4/../core/container_types.h:49, from ccp4/../core/container_hkl.h:49, from ccp4/ccp4_mtz_types.h:49, from ccp4/ccp4_mtz_io.h:49, from ccp4/ccp4_mtz_io.cpp:42: ccp4/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::Atom; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:444:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 444 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::Atom; _Alloc = std::allocator]', inlined from 'clipper::Atom_list clipper::MMonomer::atom_list() const' at minimol/minimol.cpp:150:18: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::Atom; _Alloc = std::allocator]', inlined from 'clipper::Atom_list clipper::MModel::atom_list() const' at minimol/minimol.cpp:485:22: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::Atom; _Alloc = std::allocator]', inlined from 'clipper::Atom_list clipper::MPolymer::atom_list() const' at minimol/minimol.cpp:320:20: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ccp4/ccp4_utils.lo ccp4/ccp4_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_utils.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_utils.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o cns/cns_hkl_io.lo cns/cns_hkl_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c cns/cns_hkl_io.cpp -fPIC -DPIC -o cns/.libs/cns_hkl_io.o In file included from cns/../core/clipper_types.h:49, from cns/../core/cell.h:50, from cns/../core/coords.h:49, from cns/../core/hkl_lookup.h:49, from cns/../core/hkl_info.h:49, from cns/../core/hkl_data.h:49, from cns/../core/hkl_datatypes.h:49, from cns/cns_hkl_io.h:49, from cns/cns_hkl_io.cpp:42: cns/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o cns/cns_map_io.lo cns/cns_map_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c cns/cns_map_io.cpp -fPIC -DPIC -o cns/.libs/cns_map_io.o In file included from cns/../core/clipper_types.h:49, from cns/../core/cell.h:50, from cns/../core/coords.h:49, from cns/../core/container.h:49, from cns/../core/container_types.h:49, from cns/../core/container_map.h:49, from cns/cns_map_io.h:49, from cns/cns_map_io.cpp:43: cns/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = unsigned char]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = char]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = short unsigned int]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = short int]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = unsigned int]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = int]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = float]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = double]': cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 205 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 209 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 212 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 223 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 252 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = unsigned char]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = char]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = short unsigned int]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = short int]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = unsigned int]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = int]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = float]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = double]': cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 331 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 334 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 338 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 341 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 352 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 364 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 372 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 381 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap&, T) [with T = float]': cns/cns_map_io.cpp:497:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 497 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:500:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 500 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:504:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 504 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:507:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 507 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:518:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 518 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:536:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 536 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:544:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 544 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:553:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 553 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function 'clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap&, T) [with T = double]': cns/cns_map_io.cpp:497:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 497 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:500:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 500 | fgets(buf,512,f);; // could be blank line first | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:504:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 504 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:507:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 507 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:518:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 518 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:536:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 536 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:544:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 544 | fgets(buf,512,f);; // read slice number line | ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:553:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 553 | fgets(buf,512,f);; | ~~~~~^~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from ccp4/../core/clipper_memory.h:50, from ccp4/../core/clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o fortran/f_interface.lo fortran/f_interface.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c fortran/f_interface.cpp -fPIC -DPIC -o fortran/.libs/f_interface.o In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from fortran/f_interface.cpp:1: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::CCP4MTZfile::crystalinf; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:444:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 444 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::CCP4MTZfile::crystalinf; _Alloc = std::allocator]', inlined from 'void clipper::CCP4MTZfile::export_crystal(const clipper::MTZcrystal&, clipper::String)' at ccp4/ccp4_mtz_io.cpp:1086:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::CCP4MTZfile::datasetinf; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:444:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 444 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::CCP4MTZfile::datasetinf; _Alloc = std::allocator]', inlined from 'void clipper::CCP4MTZfile::export_dataset(const clipper::MTZdataset&, clipper::String)' at ccp4/ccp4_mtz_io.cpp:1097:35: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::CCP4MTZfile::crystalinf; _Alloc = std::allocator]', inlined from 'void clipper::read_hierarchy(CMtz::MTZ*, std::vector&)' at ccp4/ccp4_mtz_io.cpp:323:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::CCP4MTZfile::datasetinf; _Alloc = std::allocator]', inlined from 'void clipper::read_hierarchy(CMtz::MTZ*, std::vector&)' at ccp4/ccp4_mtz_io.cpp:327:41: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from ../clipper/core/clipper_memory.h:50, from ../clipper/core/clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::Atom; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:444:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 444 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from ccp4/../core/clipper_memory.h:50, from ccp4/../core/clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::Atom; _Alloc = std::allocator]', inlined from 'void sfcalc_(const int*, const float*, const int*, const float*, const float*, const float*, const float*, const float*, const int*, const int*, const int*, const int*, const int*, float*, float*)' at fortran/f_interface.cpp:35:22: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::NXmap::init(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]' at ccp4/../core/nxmap.h:367:63, inlined from 'void clipper::CCP4MAPfile::import_nxmap(clipper::NXmap&) const [with T = double]' at ccp4/ccp4_map_io.cpp:342:13: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::CCP4MTZfile::crystalinf; _Alloc = std::allocator]', inlined from 'void clipper::CCP4MTZfile::open_write(clipper::String)' at ccp4/ccp4_mtz_io.cpp:629:21: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::CCP4MTZfile::datasetinf; _Alloc = std::allocator]', inlined from 'void clipper::CCP4MTZfile::open_write(clipper::String)' at ccp4/ccp4_mtz_io.cpp:630:33: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]' at ccp4/../core/xmap.h:364:156, inlined from 'clipper::CCP4MAPfile::ASUerror clipper::CCP4MAPfile::import_xmap_check_asu(clipper::Xmap&, T) const [with T = double]' at ccp4/ccp4_map_io.cpp:497:12: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::reference_cols(CMtz::MTZ*, std::vector, std::vector >, std::vector >&, std::vector >&)' at ccp4/ccp4_mtz_io.cpp:384:21: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]' at ccp4/../core/xmap.h:364:156, inlined from 'void clipper::CCP4MAPfile::import_xmap(clipper::Xmap&) const [with T = double]' at ccp4/ccp4_map_io.cpp:212:12: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o mmdb/libclipper-mmdb.la -rpath /usr/lib/arm-linux-gnueabihf mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o mmdb/.libs/clipper_mmdb.o -Wl,-rpath -Wl,/build/clipper-2.1.20201109/clipper/core/.libs core/.libs/libclipper-core.so -lmmdb2 -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so.2" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so.2") libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so") libtool: link: ( cd "mmdb/.libs" && rm -f "libclipper-mmdb.la" && ln -s "../libclipper-mmdb.la" "libclipper-mmdb.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o phs/libclipper-phs.la -rpath /usr/lib/arm-linux-gnueabihf phs/phs_io.lo core/libclipper-core.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o phs/.libs/phs_io.o -Wl,-rpath -Wl,/build/clipper-2.1.20201109/clipper/core/.libs core/.libs/libclipper-core.so -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so.2" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so.2") libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so") libtool: link: ( cd "phs/.libs" && rm -f "libclipper-phs.la" && ln -s "../libclipper-phs.la" "libclipper-phs.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o cif/libclipper-cif.la -rpath /usr/lib/arm-linux-gnueabihf cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o cif/.libs/cif_data_io.o -Wl,-rpath -Wl,/build/clipper-2.1.20201109/clipper/core/.libs core/.libs/libclipper-core.so -lmmdb2 -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: link: (cd "cif/.libs" && rm -f "libclipper-cif.so.2" && ln -s "libclipper-cif.so.2.0.1" "libclipper-cif.so.2") libtool: link: (cd "cif/.libs" && rm -f "libclipper-cif.so" && ln -s "libclipper-cif.so.2.0.1" "libclipper-cif.so") libtool: link: ( cd "cif/.libs" && rm -f "libclipper-cif.la" && ln -s "../libclipper-cif.la" "libclipper-cif.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o fortran/libclipper-fortran.la -rpath /usr/lib/arm-linux-gnueabihf fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o fortran/.libs/f_interface.o -Wl,-rpath -Wl,/build/clipper-2.1.20201109/clipper/core/.libs -Wl,-rpath -Wl,/build/clipper-2.1.20201109/clipper/contrib/.libs core/.libs/libclipper-core.so contrib/.libs/libclipper-contrib.so -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1 /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o minimol/libclipper-minimol.la -rpath /usr/lib/arm-linux-gnueabihf minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so.2" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so.2") libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so") libtool: link: ( cd "fortran/.libs" && rm -f "libclipper-fortran.la" && ln -s "../libclipper-fortran.la" "libclipper-fortran.la" ) libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -Wl,-rpath -Wl,/build/clipper-2.1.20201109/clipper/core/.libs -Wl,-rpath -Wl,/build/clipper-2.1.20201109/clipper/mmdb/.libs core/.libs/libclipper-core.so mmdb/.libs/libclipper-mmdb.so -lmmdb2 -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1 libtool: link: (cd "minimol/.libs" && rm -f "libclipper-minimol.so.2" && ln -s "libclipper-minimol.so.2.0.1" "libclipper-minimol.so.2") libtool: link: (cd "minimol/.libs" && rm -f "libclipper-minimol.so" && ln -s "libclipper-minimol.so.2.0.1" "libclipper-minimol.so") libtool: link: ( cd "minimol/.libs" && rm -f "libclipper-minimol.la" && ln -s "../libclipper-minimol.la" "libclipper-minimol.la" ) In file included from /usr/include/c++/12/vector:70, from cns/../core/clipper_memory.h:50, from cns/../core/clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::NXmap::init(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]' at cns/../core/nxmap.h:367:63, inlined from 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = double]' at cns/cns_map_io.cpp:361:13: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]' at cns/../core/xmap.h:364:156, inlined from 'clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap&, T) [with T = double]' at cns/cns_map_io.cpp:527:12: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]' at cns/../core/xmap.h:364:156, inlined from 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = double]' at cns/cns_map_io.cpp:232:12: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o cns/libclipper-cns.la -rpath /usr/lib/arm-linux-gnueabihf cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -Wl,-rpath -Wl,/build/clipper-2.1.20201109/clipper/core/.libs core/.libs/libclipper-core.so -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o ccp4/libclipper-ccp4.la -rpath /usr/lib/arm-linux-gnueabihf ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so.2" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so.2") libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so") libtool: link: ( cd "cns/.libs" && rm -f "libclipper-cns.la" && ln -s "../libclipper-cns.la" "libclipper-cns.la" ) libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -Wl,-rpath -Wl,/build/clipper-2.1.20201109/clipper/core/.libs core/.libs/libclipper-core.so -lccp4c -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so.2" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so.2") libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so") libtool: link: ( cd "ccp4/.libs" && rm -f "libclipper-ccp4.la" && ln -s "../libclipper-ccp4.la" "libclipper-ccp4.la" ) make[4]: Leaving directory '/build/clipper-2.1.20201109/clipper' make[3]: Leaving directory '/build/clipper-2.1.20201109/clipper' Making all in examples make[3]: Entering directory '/build/clipper-2.1.20201109/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/clipper-2.1.20201109/examples' make[3]: Entering directory '/build/clipper-2.1.20201109' make[3]: Leaving directory '/build/clipper-2.1.20201109' make[2]: Leaving directory '/build/clipper-2.1.20201109' make[1]: Leaving directory '/build/clipper-2.1.20201109' dh_auto_test "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" make -j4 check "TESTSUITEFLAGS=-j4 --verbose" VERBOSE=1 make[1]: Entering directory '/build/clipper-2.1.20201109' Making check in clipper make[2]: Entering directory '/build/clipper-2.1.20201109/clipper' Making check in core make[3]: Entering directory '/build/clipper-2.1.20201109/clipper/core' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/clipper-2.1.20201109/clipper/core' Making check in contrib make[3]: Entering directory '/build/clipper-2.1.20201109/clipper/contrib' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/clipper-2.1.20201109/clipper/contrib' make[3]: Entering directory '/build/clipper-2.1.20201109/clipper' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/clipper-2.1.20201109/clipper' make[2]: Leaving directory '/build/clipper-2.1.20201109/clipper' Making check in examples make[2]: Entering directory '/build/clipper-2.1.20201109/examples' make rfltest sgtest symtest ccad diffmap maptest mtztest cmaplocal ffttest sktest cnstest cns2mtz maketestdata sftest phstest ciftophs ftndemo make[3]: Entering directory '/build/clipper-2.1.20201109/examples' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o rfltest.o rfltest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o sgtest.o sgtest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o symtest.o symtest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ccad.o ccad.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from ccad.cpp:69: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from sgtest.cpp:1: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from rfltest.cpp:1: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from symtest.cpp:1: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o diffmap.o diffmap.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from diffmap.cpp:5: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o maptest.o maptest.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from maptest.cpp:4: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/12/vector:70, from ../clipper/core/clipper_memory.h:50, from ../clipper/core/clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../clipper/core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../clipper/core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../clipper/core/resol_fn.h:80:43: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o mtztest.o mtztest.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from mtztest.cpp:1: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o cmaplocal.o cmaplocal.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from cmaplocal.cpp:4: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ffttest.o ffttest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o sktest.o sktest.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from ffttest.cpp:6: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from sktest.cpp:1: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/12/vector:70, from ../clipper/core/clipper_memory.h:50, from ../clipper/core/clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../clipper/core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../clipper/core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../clipper/core/resol_fn.h:80:43: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o cnstest.o cnstest.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from cnstest.cpp:1: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../clipper/core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../clipper/core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../clipper/core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../clipper/core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_gaussian::BasisFn_gaussian()' at ../clipper/core/resol_basisfn.h:160:42, inlined from 'int main()' at mtztest.cpp:96:20: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../clipper/core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../clipper/core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../clipper/core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../clipper/core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_expcubic::BasisFn_expcubic()' at ../clipper/core/resol_basisfn.h:256:42, inlined from 'int main()' at mtztest.cpp:99:20: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o cns2mtz.o cns2mtz.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from cns2mtz.h:4, from cns2mtz.cpp:9: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o maketestdata.o maketestdata.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o sftest.o sftest.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from maketestdata.cpp:4: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from sftest.cpp:5: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o phstest.o phstest.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from phstest.cpp:1: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algo.h:60, from /usr/include/c++/12/algorithm:61, from sftest.cpp:11: /usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1908 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1802 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ciftophs.o ciftophs.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from ciftophs.cpp:5: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from /usr/include/c++/12/vector:70, from ../clipper/core/clipper_memory.h:50, from ../clipper/core/clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:444:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 444 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../clipper/core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../clipper/core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../clipper/core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../clipper/core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_aniso_gaussian::BasisFn_aniso_gaussian()' at ../clipper/core/resol_basisfn.h:182:48: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ f77 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -c -o ftndemo.o ftndemo.f In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at ../clipper/core/clipper_types.h:376:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at ../clipper/core/clipper_types.h:403:27, inlined from 'int main(int, char**)' at sftest.cpp:244:25: /usr/include/c++/12/bits/stl_vector.h:1053:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1053 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'int main(int, char**)' at sftest.cpp:269:21: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18, inlined from 'int main(int, char**)' at sftest.cpp:276:12: /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1937 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1938 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1939 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18, inlined from 'int main(int, char**)' at sftest.cpp:276:12: /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1854 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o rfltest rfltest.o ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 In file included from /usr/include/c++/12/vector:70, from ../clipper/core/clipper_memory.h:50, from ../clipper/core/clipper_types.h:50: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:444:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 444 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o sgtest sgtest.o ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/rfltest rfltest.o ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:444:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/sgtest sgtest.o ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:444:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:444:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o symtest symtest.o ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o ccad ccad.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:444:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/symtest symtest.o ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/ccad ccad.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:444:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o diffmap diffmap.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:444:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/diffmap diffmap.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:444:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o maptest maptest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o mtztest mtztest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]': /usr/include/c++/12/bits/vector.tcc:444:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/maptest maptest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/mtztest mtztest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::HKL_data >; _Alloc = std::allocator > >]': /usr/include/c++/12/bits/vector.tcc:444:5: note: parameter passing for argument of type 'std::vector > >::iterator' changed in GCC 7.1 /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o cmaplocal cmaplocal.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o ffttest ffttest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/cmaplocal cmaplocal.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/ffttest ffttest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o sktest sktest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o cnstest cnstest.o ../clipper/cns/libclipper-cns.la ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o maketestdata maketestdata.o ../clipper/mmdb/libclipper-mmdb.la ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/sktest sktest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/cnstest cnstest.o ../clipper/cns/.libs/libclipper-cns.so ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/maketestdata maketestdata.o ../clipper/mmdb/.libs/libclipper-mmdb.so ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o sftest sftest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/mmdb/libclipper-mmdb.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o phstest phstest.o ../clipper/phs/libclipper-phs.la ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o ciftophs ciftophs.o ../clipper/phs/libclipper-phs.la ../clipper/cif/libclipper-cif.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/sftest sftest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/mmdb/.libs/libclipper-mmdb.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/phstest phstest.o ../clipper/phs/.libs/libclipper-phs.so ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/ciftophs ciftophs.o ../clipper/phs/.libs/libclipper-phs.so ../clipper/cif/.libs/libclipper-cif.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o ftndemo ftndemo.o ../clipper/fortran/libclipper-fortran.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgfortran -lm -L/usr/lib/arm-linux-gnueabihf -lmmdb2 In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]', inlined from 'int main(int, char**)' at cns2mtz.cpp:291:17: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]', inlined from 'int main(int, char**)' at cns2mtz.cpp:305:20: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]', inlined from 'int main(int, char**)' at cns2mtz.cpp:320:17: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]', inlined from 'int main(int, char**)' at cns2mtz.cpp:334:20: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]', inlined from 'int main(int, char**)' at cns2mtz.cpp:349:19: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]', inlined from 'int main(int, char**)' at cns2mtz.cpp:363:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]', inlined from 'int main(int, char**)' at cns2mtz.cpp:377:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]', inlined from 'int main(int, char**)' at cns2mtz.cpp:390:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::HKL_data; _Alloc = std::allocator >]', inlined from 'int main(int, char**)' at cns2mtz.cpp:403:25: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = clipper::HKL_data >; _Alloc = std::allocator > >]', inlined from 'int main(int, char**)' at cns2mtz.cpp:417:25: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >*, std::vector > > >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/ftndemo ftndemo.o ../clipper/fortran/.libs/libclipper-fortran.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgfortran -lm -lmmdb2 /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o cns2mtz cns2mtz.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/mmdb/libclipper-mmdb.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/cns2mtz cns2mtz.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/mmdb/.libs/libclipper-mmdb.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 make[3]: Leaving directory '/build/clipper-2.1.20201109/examples' make[2]: Leaving directory '/build/clipper-2.1.20201109/examples' make[2]: Entering directory '/build/clipper-2.1.20201109' make[2]: Leaving directory '/build/clipper-2.1.20201109' make[1]: Leaving directory '/build/clipper-2.1.20201109' create-stamp debian/debhelper-build-stamp dh_testroot "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_prep "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" rm -f -- debian/libclipper-dev.substvars debian/libclipper2.substvars debian/libclipper-doc.substvars rm -fr -- debian/.debhelper/generated/libclipper-dev/ debian/libclipper-dev/ debian/tmp/ debian/.debhelper/generated/libclipper2/ debian/libclipper2/ debian/.debhelper/generated/libclipper-doc/ debian/libclipper-doc/ dh_auto_install "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d /build/clipper-2.1.20201109/debian/tmp make -j1 install DESTDIR=/build/clipper-2.1.20201109/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/clipper-2.1.20201109' Making install in clipper make[2]: Entering directory '/build/clipper-2.1.20201109/clipper' Making install in core make[3]: Entering directory '/build/clipper-2.1.20201109/clipper/core' make[4]: Entering directory '/build/clipper-2.1.20201109/clipper/core' /usr/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-core.la '/build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/libclipper-core.so.2.0.1 /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so.2 || { rm -f libclipper-core.so.2 && ln -s libclipper-core.so.2.0.1 libclipper-core.so.2; }; }) libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so || { rm -f libclipper-core.so && ln -s libclipper-core.so.2.0.1 libclipper-core.so; }; }) libtool: install: /usr/bin/install -c .libs/libclipper-core.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-core.la libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /usr/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/core' /usr/bin/install -c -m 644 atomsf.h container_types.h nxmap_operator.h cell.h coords.h ramachandran.h clipper_instance.h derivs.h resol_basisfn.h clipper_memory.h fftmap.h resol_fn.h clipper_message.h fftmap_sparse.h resol_targetfn.h clipper_precision.h hkl_compute.h rotation.h clipper_stats.h hkl_data.h spacegroup.h clipper_sysdep.h hkl_datatypes.h spacegroup_data.h clipper_test.h hkl_info.h symop.h clipper_types.h hkl_lookup.h clipper_util.h hkl_operators.h container.h map_interp.h xmap.h container_hkl.h map_utils.h container_map.h nxmap.h clipper_thread.h test_core.h '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/core' /usr/bin/install -c -m 644 test_data.h '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/core' make[4]: Leaving directory '/build/clipper-2.1.20201109/clipper/core' make[3]: Leaving directory '/build/clipper-2.1.20201109/clipper/core' Making install in contrib make[3]: Entering directory '/build/clipper-2.1.20201109/clipper/contrib' make[4]: Entering directory '/build/clipper-2.1.20201109/clipper/contrib' /usr/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-contrib.la '/build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: warning: relinking 'libclipper-contrib.la' libtool: install: (cd /build/clipper-2.1.20201109/clipper/contrib; /bin/sh "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o libclipper-contrib.la -rpath /usr/lib/arm-linux-gnueabihf convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1 libtool: install: /usr/bin/install -c .libs/libclipper-contrib.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so.2 || { rm -f libclipper-contrib.so.2 && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so.2; }; }) libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so || { rm -f libclipper-contrib.so && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so; }; }) libtool: install: /usr/bin/install -c .libs/libclipper-contrib.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-contrib.la libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /usr/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/contrib' /usr/bin/install -c -m 644 convolution_search.h mapfilter.h sfscale.h edcalc.h originmatch.h sfweight.h fffear.h sfcalc.h skeleton.h function_object_bases.h sfcalc_obs.h test_contrib.h '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/contrib' make[4]: Leaving directory '/build/clipper-2.1.20201109/clipper/contrib' make[3]: Leaving directory '/build/clipper-2.1.20201109/clipper/contrib' make[3]: Entering directory '/build/clipper-2.1.20201109/clipper' make[4]: Entering directory '/build/clipper-2.1.20201109/clipper' /usr/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/sh ../libtool --mode=install /usr/bin/install -c mmdb/libclipper-mmdb.la minimol/libclipper-minimol.la phs/libclipper-phs.la cif/libclipper-cif.la ccp4/libclipper-ccp4.la cns/libclipper-cns.la fortran/libclipper-fortran.la '/build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: warning: relinking 'mmdb/libclipper-mmdb.la' libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/sh "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o mmdb/libclipper-mmdb.la -rpath /usr/lib/arm-linux-gnueabihf mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o mmdb/.libs/clipper_mmdb.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -lmmdb2 -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2 || { rm -f libclipper-mmdb.so.2 && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2; }; }) libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so || { rm -f libclipper-mmdb.so && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so; }; }) libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.la libtool: warning: relinking 'minimol/libclipper-minimol.la' libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/sh "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o minimol/libclipper-minimol.la -rpath /usr/lib/arm-linux-gnueabihf minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -lclipper-mmdb -lmmdb2 -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1 libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so.2 || { rm -f libclipper-minimol.so.2 && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so.2; }; }) libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so || { rm -f libclipper-minimol.so && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so; }; }) libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-minimol.la libtool: warning: relinking 'phs/libclipper-phs.la' libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/sh "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o phs/libclipper-phs.la -rpath /usr/lib/arm-linux-gnueabihf phs/phs_io.lo core/libclipper-core.la -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o phs/.libs/phs_io.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so.2 || { rm -f libclipper-phs.so.2 && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so.2; }; }) libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so || { rm -f libclipper-phs.so && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so; }; }) libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-phs.la libtool: warning: relinking 'cif/libclipper-cif.la' libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/sh "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o cif/libclipper-cif.la -rpath /usr/lib/arm-linux-gnueabihf cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o cif/.libs/cif_data_io.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -lmmdb2 -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so.2 || { rm -f libclipper-cif.so.2 && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so.2; }; }) libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so || { rm -f libclipper-cif.so && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so; }; }) libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cif.la libtool: warning: relinking 'ccp4/libclipper-ccp4.la' libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/sh "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o ccp4/libclipper-ccp4.la -rpath /usr/lib/arm-linux-gnueabihf ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -lccp4c -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2 || { rm -f libclipper-ccp4.so.2 && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2; }; }) libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so || { rm -f libclipper-ccp4.so && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so; }; }) libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.la libtool: warning: relinking 'cns/libclipper-cns.la' libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/sh "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o cns/libclipper-cns.la -rpath /usr/lib/arm-linux-gnueabihf cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so.2 || { rm -f libclipper-cns.so.2 && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so.2; }; }) libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so || { rm -f libclipper-cns.so && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so; }; }) libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cns.la libtool: warning: relinking 'fortran/libclipper-fortran.la' libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/sh "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o fortran/libclipper-fortran.la -rpath /usr/lib/arm-linux-gnueabihf fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o fortran/.libs/f_interface.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -lclipper-contrib -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1 libtool: install: /usr/bin/install -c fortran/.libs/libclipper-fortran.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so.2 || { rm -f libclipper-fortran.so.2 && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so.2; }; }) libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so || { rm -f libclipper-fortran.so && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so; }; }) libtool: install: /usr/bin/install -c fortran/.libs/libclipper-fortran.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-fortran.la libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /usr/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/ccp4' /usr/bin/install -c -m 644 ccp4/ccp4_map_io.h ccp4/ccp4_mtz_io.h ccp4/ccp4_mtz_types.h ccp4/ccp4_utils.h '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/ccp4' /usr/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/cif' /usr/bin/install -c -m 644 cif/cif_data_io.h '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/cif' /usr/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/cns' /usr/bin/install -c -m 644 cns/cns_hkl_io.h cns/cns_map_io.h '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/cns' /usr/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/minimol' /usr/bin/install -c -m 644 minimol/container_minimol.h minimol/minimol_data.h minimol/minimol_seq.h minimol/minimol.h minimol/minimol_io.h minimol/minimol_utils.h '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/minimol' /usr/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/mmdb' /usr/bin/install -c -m 644 mmdb/clipper_mmdb.h '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/mmdb' /usr/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/phs' /usr/bin/install -c -m 644 phs/phs_io.h '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/phs' /usr/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper' /usr/bin/install -c -m 644 clipper-ccp4.h clipper-contrib.h clipper-phs.h clipper-cctbx.h clipper-minimol.h clipper.h clipper-cif.h clipper-mmdb.h minimal-clipper-hkl.h clipper-cns.h minimal-clipper-map.h '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper' make[4]: Leaving directory '/build/clipper-2.1.20201109/clipper' make[3]: Leaving directory '/build/clipper-2.1.20201109/clipper' make[2]: Leaving directory '/build/clipper-2.1.20201109/clipper' Making install in examples make[2]: Entering directory '/build/clipper-2.1.20201109/examples' make[3]: Entering directory '/build/clipper-2.1.20201109/examples' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/clipper-2.1.20201109/examples' make[2]: Leaving directory '/build/clipper-2.1.20201109/examples' make[2]: Entering directory '/build/clipper-2.1.20201109' make[3]: Entering directory '/build/clipper-2.1.20201109' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' /usr/bin/install -c -m 644 clipper.pc '/build/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' make[3]: Leaving directory '/build/clipper-2.1.20201109' make[2]: Leaving directory '/build/clipper-2.1.20201109' make[1]: Leaving directory '/build/clipper-2.1.20201109' dh_install "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-dev//usr/include cp --reflink=auto -a debian/tmp/usr/include/clipper debian/libclipper-dev//usr/include/ install -m0755 -d debian/libclipper-dev//usr/lib/arm-linux-gnueabihf cp --reflink=auto -a debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cif.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cns.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-core.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-phs.so debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig debian/libclipper-dev//usr/lib/arm-linux-gnueabihf/ install -m0755 -d debian/libclipper2//usr/lib/arm-linux-gnueabihf cp --reflink=auto -a debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 debian/libclipper2//usr/lib/arm-linux-gnueabihf/ dh_installdocs "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-dev/usr/share/doc/libclipper-dev install -p -m0644 debian/copyright debian/libclipper-dev/usr/share/doc/libclipper-dev/copyright install -m0755 -d debian/libclipper2/usr/share/doc/libclipper2 install -p -m0644 debian/copyright debian/libclipper2/usr/share/doc/libclipper2/copyright install -m0755 -d debian/libclipper-doc/usr/share/doc/libclipper-doc install -m0755 -d debian/libclipper-doc/usr/share/doc/libclipper-dev cp --reflink=auto -a ./debian/index.html debian/libclipper-doc/usr/share/doc/libclipper-dev cd './doc/html/..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/clipper-2.1.20201109/debian/libclipper-doc/usr/share/doc/libclipper-dev chmod -R u\+rw,go=rX debian/libclipper-doc/usr/share/doc install -p -m0644 debian/copyright debian/libclipper-doc/usr/share/doc/libclipper-doc/copyright install -m0755 -d debian/libclipper-doc/usr/share/doc-base/ install -p -m0644 debian/libclipper-doc.doc-base debian/libclipper-doc/usr/share/doc-base/libclipper-doc.clipper dh_installchangelogs "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper2/usr/share/doc/libclipper2 install -p -m0644 debian/.debhelper/generated/libclipper2/dh_installchangelogs.dch.trimmed debian/libclipper2/usr/share/doc/libclipper2/changelog.Debian install -p -m0644 ./ChangeLog debian/libclipper2/usr/share/doc/libclipper2/changelog install -m0755 -d debian/libclipper-doc/usr/share/doc/libclipper-doc install -p -m0644 debian/.debhelper/generated/libclipper-doc/dh_installchangelogs.dch.trimmed debian/libclipper-doc/usr/share/doc/libclipper-doc/changelog.Debian install -p -m0644 ./ChangeLog debian/libclipper-doc/usr/share/doc/libclipper-doc/changelog install -m0755 -d debian/libclipper-dev/usr/share/doc/libclipper-dev install -p -m0644 debian/.debhelper/generated/libclipper-dev/dh_installchangelogs.dch.trimmed debian/libclipper-dev/usr/share/doc/libclipper-dev/changelog.Debian install -p -m0644 ./ChangeLog debian/libclipper-dev/usr/share/doc/libclipper-dev/changelog dh_installexamples "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/c2test.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/ccad.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/cctbxtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/ciftophs.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/cmaplocal.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/cns2mtz.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/cnstest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/diffmap.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/ffttest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/fomvar.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/ftndemo_lib.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/maketestdata.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/maphist.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/maptest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/memtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/mmtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/mtzcut.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/mtziotest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/mtzmissing.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/mtztest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/octest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/phstest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/reftest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/reftest2.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/rfltest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/sftest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/sgtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/sktest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/symtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/cns2mtz.h debian/libclipper-doc/usr/share/doc/libclipper-dev/examples dh_installinit "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_installsystemduser "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_lintian "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper2/usr/share/lintian/overrides install -p -m0644 debian/libclipper2.lintian-overrides debian/libclipper2/usr/share/lintian/overrides/libclipper2 dh_perl "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_link "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so ln -s libclipper-ccp4.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so ln -s libclipper-minimol.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so ln -s libclipper-fortran.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-cns.so ln -s libclipper-cns.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-cns.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-core.so ln -s libclipper-core.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-core.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-cif.so ln -s libclipper-cif.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-cif.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-phs.so ln -s libclipper-phs.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-phs.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so ln -s libclipper-contrib.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so ln -s libclipper-mmdb.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2 ln -s libclipper-fortran.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2 rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2 ln -s libclipper-ccp4.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2 rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2 ln -s libclipper-mmdb.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2 rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2 ln -s libclipper-core.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2 rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2 ln -s libclipper-phs.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2 rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2 ln -s libclipper-cif.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2 rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2 ln -s libclipper-cns.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2 rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2 ln -s libclipper-minimol.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2 rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2 ln -s libclipper-contrib.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2 dh_strip_nondeterminism "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" Using 1605631860 as canonical time Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base_1_1Map__reference__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CXmap.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleLogF1F2.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__log__gaussian.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1D__sigD.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1E__sigE__ano.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__sigmaa__omegaa.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grad__frac.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__sparse__p1__hx.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__binner.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Test__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__index.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__data__cacheobj.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Isymop.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_h.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Container.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CNXmap__operator.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__reci__frac.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1U__aniso__orth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Histogram.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/include.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__map.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1ABCD.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleI1I2.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__generic.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1AtomShapeFn.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Mat33sym.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__frac.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__sparse__p1__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base_1_1Map__reference__coord.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__data.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Spgr__descr_1_1Symop__codes.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1I__sigI__ano.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_f.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1E__sigE.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1I__sigI.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base_1_1Map__reference__index.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleLogI1I2.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Datatype__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CCell.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__sigmaa.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base_1_1Map__reference__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1RTop.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Prob__phi__2d.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/map_p2.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/hkl_objs.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CHKL__data.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1String.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/splitbar.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__data__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__log__aniso__gaussian.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Cell.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/folderclosed.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__info.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Generic__ordinal.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1RTop__frac.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__fatal.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_b.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Matrix.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1AtomSF.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_h.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__sparse__p1__xh.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1Flag__bool.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Symop.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__gaussian.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/sync_on.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/bdwn.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/hierarchy.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Spacegroup.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleEsq.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1U__aniso__frac.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/folderopen.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Property.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/map_p1.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__expcubic.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__warn.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__aniso__gaussian.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grid.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Atom__list.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__grid.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Resolution.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/sync_off.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__orth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Cell__descr.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1F__sigF__ano.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__frac.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Resolution__ordinal.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grad__map.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__dtor.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grid__sampling.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Vec3.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__ctor.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1Phi__fom.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/closed.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Range__sampling.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Property__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__operator.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CGrid__sampling.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grad__orth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/doc.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__linear.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CResolution.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1F__sigF.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleF1F2.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base_1_1Map__reference__coord.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/open.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__p1.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/bc_s.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CNXmap.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base_1_1Map__reference__index.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1F__phi.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CSpacegroup.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grid__range.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__spline.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__coord.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1Flag.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Test__core.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__orth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_g.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1RTop__orth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Spgr__descr.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__map.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1ResolutionFn.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_s.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__meanFnth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__meanEnth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CHKL__info.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__reci__orth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_a.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NX__operator.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1ResolutionFn__nonlinear.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Ramachandran.png using File::StripNondeterminism::handlers::png dh_compress "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" cd debian/libclipper-dev cd debian/libclipper2 cd debian/libclipper-doc chmod a-x usr/share/doc/libclipper-dev/changelog usr/share/doc/libclipper-dev/changelog.Debian gzip -9nf usr/share/doc/libclipper-dev/changelog usr/share/doc/libclipper-dev/changelog.Debian chmod a-x usr/share/doc/libclipper2/changelog usr/share/doc/libclipper2/changelog.Debian gzip -9nf usr/share/doc/libclipper2/changelog usr/share/doc/libclipper2/changelog.Debian chmod a-x usr/share/doc/libclipper-doc/changelog usr/share/doc/libclipper-doc/changelog.Debian cd '/build/clipper-2.1.20201109' gzip -9nf usr/share/doc/libclipper-doc/changelog usr/share/doc/libclipper-doc/changelog.Debian cd '/build/clipper-2.1.20201109' cd '/build/clipper-2.1.20201109' dh_fixperms "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" find debian/libclipper-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libclipper2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libclipper2/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libclipper-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libclipper2/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_missing: warning: usr/lib/arm-linux-gnueabihf/libclipper-ccp4.la exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/arm-linux-gnueabihf/libclipper-cif.la exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/arm-linux-gnueabihf/libclipper-cns.la exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/arm-linux-gnueabihf/libclipper-contrib.la exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/arm-linux-gnueabihf/libclipper-core.la exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/arm-linux-gnueabihf/libclipper-fortran.la exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/arm-linux-gnueabihf/libclipper-minimol.la exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/arm-linux-gnueabihf/libclipper-mmdb.la exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/arm-linux-gnueabihf/libclipper-phs.la exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: libclipper-dev (11), libclipper-doc (0), libclipper2 (18) * dh_installdocs: libclipper-dev (0), libclipper-doc (2), libclipper2 (0) * dh_installexamples: libclipper-dev (0), libclipper-doc (30), libclipper2 (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. Remember to be careful with paths containing "arm-linux-gnueabihf", where you might need to use a wildcard or (assuming compat 13+) e.g. ${DEB_HOST_MULTIARCH} in debian/not-installed to ensure it works on all architectures (see #961104). dh_dwz "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper2/usr/lib/debug/.dwz/arm-linux-gnueabihf dwz -mdebian/libclipper2/usr/lib/debug/.dwz/arm-linux-gnueabihf/libclipper2.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/libclipper2.debug -- debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 objcopy --compress-debug-sections debian/libclipper2/usr/lib/debug/.dwz/arm-linux-gnueabihf/libclipper2.debug chmod 0644 -- debian/libclipper2/usr/lib/debug/.dwz/arm-linux-gnueabihf/libclipper2.debug dh_strip "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/7b objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/7b/bd693e02a91e61f2fc54913e8a6ad1c1c06cc1.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/7b/bd693e02a91e61f2fc54913e8a6ad1c1c06cc1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/7b/bd693e02a91e61f2fc54913e8a6ad1c1c06cc1.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/80 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/80/35d177ad34b4244219c5762d46057434731123.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/80/35d177ad34b4244219c5762d46057434731123.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/80/35d177ad34b4244219c5762d46057434731123.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/b4 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/b4/96b0316ea3a4c76ec800a0c3f5ae501be00511.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/b4/96b0316ea3a4c76ec800a0c3f5ae501be00511.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/b4/96b0316ea3a4c76ec800a0c3f5ae501be00511.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/27 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/27/d65dac12e010202bdd61a8a0adb9a1cebc22f3.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/27/d65dac12e010202bdd61a8a0adb9a1cebc22f3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/27/d65dac12e010202bdd61a8a0adb9a1cebc22f3.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/6a objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/6a/6fecab90ae10ba80a06b4a42a1773f758f8549.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/6a/6fecab90ae10ba80a06b4a42a1773f758f8549.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/6a/6fecab90ae10ba80a06b4a42a1773f758f8549.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/bc objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/bc/f8bfefb0a7efc646a7c8866fc78dc41a48fbe6.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/bc/f8bfefb0a7efc646a7c8866fc78dc41a48fbe6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/bc/f8bfefb0a7efc646a7c8866fc78dc41a48fbe6.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/af objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/af/6a7499b193e84df58af10ab1f25048f7060fad.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/af/6a7499b193e84df58af10ab1f25048f7060fad.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/af/6a7499b193e84df58af10ab1f25048f7060fad.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/d4 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/d4/ef1fbbf81e4cf512bb963169727790ba1cff5f.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/d4/ef1fbbf81e4cf512bb963169727790ba1cff5f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/d4/ef1fbbf81e4cf512bb963169727790ba1cff5f.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/a6 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/a6/7039f0ee19c65217d9926187805db438a4ca02.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/a6/7039f0ee19c65217d9926187805db438a4ca02.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/a6/7039f0ee19c65217d9926187805db438a4ca02.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libclipper2/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libclipper2/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/libclipper2/usr/lib/debug install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/share/doc ln -s libclipper2 debian/.debhelper/libclipper2/dbgsym-root/usr/share/doc/libclipper2-dbgsym install -m0755 -d debian/.debhelper/libclipper2 dh_makeshlibs "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" rm -f debian/libclipper-dev/DEBIAN/shlibs rm -f debian/libclipper2/DEBIAN/shlibs install -m0755 -d debian/libclipper2/DEBIAN echo "libclipper-ccp4 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-cif 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-cns 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-contrib 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-core 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-fortran 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-minimol 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-mmdb 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-phs 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs chmod 0644 -- debian/libclipper2/DEBIAN/shlibs mv debian/.debhelper/generated/libclipper2/triggers.new debian/.debhelper/generated/libclipper2/triggers rm -f debian/libclipper-doc/DEBIAN/shlibs dh_shlibdeps "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper2/DEBIAN dpkg-shlibdeps -Tdebian/libclipper2.substvars debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 found in none of the libraries dh_installdeb "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-dev/DEBIAN install -m0755 -d debian/libclipper2/DEBIAN install -p -m0644 debian/.debhelper/generated/libclipper2/triggers debian/libclipper2/DEBIAN/triggers install -m0755 -d debian/libclipper-doc/DEBIAN dh_gencontrol "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-dev/DEBIAN echo misc:Depends= >> debian/libclipper-dev.substvars echo misc:Pre-Depends= >> debian/libclipper-dev.substvars dpkg-gencontrol -plibclipper-dev -ldebian/changelog -Tdebian/libclipper-dev.substvars -Pdebian/libclipper-dev install -m0755 -d debian/libclipper2/DEBIAN echo misc:Depends= >> debian/libclipper2.substvars echo misc:Pre-Depends= >> debian/libclipper2.substvars install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/DEBIAN dpkg-gencontrol -plibclipper2 -ldebian/changelog -Tdebian/libclipper2.substvars -Pdebian/.debhelper/libclipper2/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=libclipper2-dbgsym "-DDepends=libclipper2 (= \${binary:Version})" "-DDescription=debug symbols for libclipper2" "-DBuild-Ids=27d65dac12e010202bdd61a8a0adb9a1cebc22f3 6a6fecab90ae10ba80a06b4a42a1773f758f8549 7bbd693e02a91e61f2fc54913e8a6ad1c1c06cc1 8035d177ad34b4244219c5762d46057434731123 a67039f0ee19c65217d9926187805db438a4ca02 af6a7499b193e84df58af10ab1f25048f7060fad b496b0316ea3a4c76ec800a0c3f5ae501be00511 bcf8bfefb0a7efc646a7c8866fc78dc41a48fbe6 d4ef1fbbf81e4cf512bb963169727790ba1cff5f" -DSection=debug "-DReplaces=libclipper2-dbg (<< 2.1.20160809-1~)" "-DBreaks=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-doc/DEBIAN echo misc:Depends= >> debian/libclipper-doc.substvars echo misc:Pre-Depends= >> debian/libclipper-doc.substvars dpkg-gencontrol -plibclipper-doc -ldebian/changelog -Tdebian/libclipper-doc.substvars -Pdebian/libclipper-doc chmod 0644 -- debian/libclipper-dev/DEBIAN/control chmod 0644 -- debian/libclipper-doc/DEBIAN/control chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibclipper2 -ldebian/changelog -Tdebian/libclipper2.substvars -Pdebian/libclipper2 chmod 0644 -- debian/libclipper2/DEBIAN/control dh_md5sums "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper2/DEBIAN install -m0755 -d debian/libclipper-dev/DEBIAN cd debian/libclipper2 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libclipper-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums install -m0755 -d debian/libclipper-doc/DEBIAN cd debian/libclipper-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libclipper-dev/DEBIAN/md5sums chmod 0644 -- debian/libclipper2/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/DEBIAN cd debian/.debhelper/libclipper2/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/libclipper-doc/DEBIAN/md5sums dh_builddeb "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dpkg-deb --root-owner-group --build debian/libclipper-dev .. dpkg-deb --root-owner-group --build debian/libclipper-doc .. dpkg-deb --root-owner-group --build debian/.debhelper/libclipper2/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libclipper2 .. dpkg-deb: building package 'libclipper-dev' in '../libclipper-dev_2.1.20201109-1_armhf.deb'. dpkg-deb: building package 'libclipper-doc' in '../libclipper-doc_2.1.20201109-1_all.deb'. dpkg-deb: building package 'libclipper2-dbgsym' in '../libclipper2-dbgsym_2.1.20201109-1_armhf.deb'. dpkg-deb: building package 'libclipper2' in '../libclipper2_2.1.20201109-1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../clipper_2.1.20201109-1_armhf.buildinfo dpkg-genchanges --build=binary -O../clipper_2.1.20201109-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/12818/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/12818/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/12818 and its subdirectories I: Current time: Sun May 7 15:57:29 +14 2023 I: pbuilder-time-stamp: 1683424649