I: pbuilder: network access will be disabled during build I: Current time: Fri Apr 21 02:32:05 +14 2023 I: pbuilder-time-stamp: 1681993925 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [vsearch_2.22.1-1.dsc] I: copying [./vsearch_2.22.1.orig.tar.gz] I: copying [./vsearch_2.22.1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Sep 27 09:12:36 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./vsearch_2.22.1-1.dsc: no acceptable signature found dpkg-source: info: extracting vsearch in vsearch-2.22.1 dpkg-source: info: unpacking vsearch_2.22.1.orig.tar.gz dpkg-source: info: unpacking vsearch_2.22.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying sysconf_memory_sizing.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/357/tmp/hooks/D01_modify_environment starting debug: Running on codethink12-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 21 02:32 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/357/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/357/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.15(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DIRSTACK=() DISTRIBUTION=bookworm EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/var/lib/jenkins HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=357 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fdym1ZNT/pbuilderrc_2p4M --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fdym1ZNT/b2 --logfile b2/build.log --extrapackages usrmerge vsearch_2.22.1-1.dsc' SUDO_GID=117 SUDO_UID=110 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root USERNAME=root _='I: set' http_proxy=http://192.168.101.16:3128 I: uname -a Linux i-capture-the-hostname 4.15.0-209-generic #220-Ubuntu SMP Tue Mar 21 19:52:44 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 19 00:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/357/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, markdown, ghostscript, time dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on markdown; however: Package markdown is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on time; however: Package time is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcups2{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libgs-common{a} libgs10{a} libgs10-common{a} libice6{a} libicu72{a} libidn12{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libopenjp2-7{a} libpaper1{a} libpipeline1{a} libpng16-16{a} libsm6{a} libsub-override-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libxt6{a} m4{a} man-db{a} markdown{a} po-debconf{a} poppler-data{a} sensible-utils{a} time{a} ucf{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc curl dbus fonts-droid-fallback libarchive-cpio-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx wget 0 packages upgraded, 77 newly installed, 0 to remove and 0 not upgraded. Need to get 41.1 MB of archives. After unpacking 147 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 poppler-data all 0.4.12-1 [1601 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 25 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.1+b3 [619 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 libfontenc1 arm64 1:1.1.4-1 [23.6 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 libpng16-16 arm64 1.6.39-2 [269 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 libfreetype6 arm64 2.12.1+dfsg-4 [369 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 x11-common all 1:7.7+23 [252 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 xfonts-utils arm64 1:7.7+6 [85.6 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 fonts-urw-base35 all 20200910-7 [10.8 MB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 fontconfig-config arm64 2.14.1-4 [315 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 libgs-common all 10.0.0~dfsg-11 [148 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 libgs10-common all 10.0.0~dfsg-11 [586 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 libavahi-common-data arm64 0.8-9 [107 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 libavahi-common3 arm64 0.8-9 [40.3 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 libdbus-1-3 arm64 1.14.6-1 [191 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 libavahi-client3 arm64 0.8-9 [43.7 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 libcups2 arm64 2.4.2-3 [228 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 libfontconfig1 arm64 2.14.1-4 [381 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 libidn12 arm64 1.41-1 [82.8 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 libijs-0.35 arm64 0.35-15 [15.8 kB] Get: 53 http://deb.debian.org/debian bookworm/main arm64 libjbig2dec0 arm64 0.19-3 [62.8 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 libjpeg62-turbo arm64 1:2.1.5-2 [171 kB] Get: 55 http://deb.debian.org/debian bookworm/main arm64 liblcms2-2 arm64 2.14-2 [143 kB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 libopenjp2-7 arm64 2.5.0-1+b1 [176 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 libpaper1 arm64 1.1.29 [12.6 kB] Get: 58 http://deb.debian.org/debian bookworm/main arm64 libdeflate0 arm64 1.14-1 [54.3 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 libjbig0 arm64 2.1-6.1 [30.0 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 liblerc4 arm64 4.0.0+ds-2 [138 kB] Get: 61 http://deb.debian.org/debian bookworm/main arm64 libwebp7 arm64 1.2.4-0.1 [259 kB] Get: 62 http://deb.debian.org/debian bookworm/main arm64 libtiff6 arm64 4.5.0-5 [300 kB] Get: 63 http://deb.debian.org/debian bookworm/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 64 http://deb.debian.org/debian bookworm/main arm64 libbsd0 arm64 0.11.7-2 [115 kB] Get: 65 http://deb.debian.org/debian bookworm/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 66 http://deb.debian.org/debian bookworm/main arm64 libxcb1 arm64 1.15-1 [143 kB] Get: 67 http://deb.debian.org/debian bookworm/main arm64 libx11-data all 2:1.8.4-2 [292 kB] Get: 68 http://deb.debian.org/debian bookworm/main arm64 libx11-6 arm64 2:1.8.4-2 [736 kB] Get: 69 http://deb.debian.org/debian bookworm/main arm64 libice6 arm64 2:1.0.10-1 [55.6 kB] Get: 70 http://deb.debian.org/debian bookworm/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB] Get: 71 http://deb.debian.org/debian bookworm/main arm64 libxt6 arm64 1:1.2.1-1.1 [172 kB] Get: 72 http://deb.debian.org/debian bookworm/main arm64 libgs10 arm64 10.0.0~dfsg-11 [2252 kB] Get: 73 http://deb.debian.org/debian bookworm/main arm64 ghostscript arm64 10.0.0~dfsg-11 [56.7 kB] Get: 74 http://deb.debian.org/debian bookworm/main arm64 libbz2-dev arm64 1.0.8-5+b1 [31.5 kB] Get: 75 http://deb.debian.org/debian bookworm/main arm64 markdown all 1.0.1-12 [17.7 kB] Get: 76 http://deb.debian.org/debian bookworm/main arm64 time arm64 1.9-0.2 [50.6 kB] Get: 77 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Fetched 41.1 MB in 1s (42.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package poppler-data. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../00-poppler-data_0.4.12-1_all.deb ... Unpacking poppler-data (0.4.12-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../03-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../09-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package ucf. Preparing to unpack .../11-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../21-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../24-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../26-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../27-libxml2_2.9.14+dfsg-1.1+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.1+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package libfontenc1:arm64. Preparing to unpack .../32-libfontenc1_1%3a1.1.4-1_arm64.deb ... Unpacking libfontenc1:arm64 (1:1.1.4-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../33-libbrotli1_1.0.9-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b6) ... 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Setting up libpaper1:arm64 (1.1.29) ... Creating config file /etc/papersize with new version Setting up po-debconf (1.0.21+nmu1) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxt6:arm64 (1:1.2.1-1.1) ... Setting up libcups2:arm64 (2.4.2-3) ... Setting up debhelper (13.11.4) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up libgs10-common (10.0.0~dfsg-11) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libfontconfig1:arm64 (2.14.1-4) ... Setting up libgs10:arm64 (10.0.0~dfsg-11) ... Setting up ghostscript (10.0.0~dfsg-11) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... usrmerge is already the newest version (35). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/357/tmp/hooks/A99_set_merged_usr starting Re-configuring usrmerge... I: user script /srv/workspace/pbuilder/357/tmp/hooks/A99_set_merged_usr finished hostname: Temporary failure in name resolution I: Running cd /build/vsearch-2.22.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../vsearch_2.22.1-1_source.changes dpkg-buildpackage: info: source package vsearch dpkg-buildpackage: info: source version 2.22.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/vsearch-2.22.1' dh_clean rm -rf data/simm if [ -d test ] ; then find test -mindepth 1 -not -name '*.sh' -delete ; fi rm -f README.html data/README.html rm -f *.out make[1]: Leaving directory '/build/vsearch-2.22.1' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:85: installing './compile' configure.ac:6: installing './config.guess' configure.ac:6: installing './config.sub' configure.ac:7: installing './install-sh' configure.ac:7: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking target system type... aarch64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for ranlib... ranlib checking for pthread_create in -lpthread... yes checking for dlopen in -ldl... yes checking for GetProcessMemoryInfo in -lpsapi... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for getopt.h... yes checking for fcntl.h... yes checking for float.h... yes checking for regex.h... yes checking for ctype.h... yes checking for locale.h... yes checking for limits.h... yes checking for string.h... (cached) yes checking for sys/time.h... yes checking for dlfcn.h... yes checking for pthread.h... yes checking for inline... inline checking for size_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for uint8_t... yes checking for GNU libc compatible malloc... yes checking for working strtod... yes checking for working alloca.h... yes checking for alloca... yes checking for GNU libc compatible realloc... yes checking for memmove... yes checking for memcpy... yes checking for posix_memalign... yes checking for gettimeofday... yes checking for localtime... yes checking for memchr... yes checking for memset... yes checking for pow... yes checking for regcomp... yes checking for strcasecmp... yes checking for strchr... yes checking for strcspn... yes checking for sysinfo... yes checking for bzlib.h... yes checking for zlib.h... yes checking for ps2pdf... yes checking for windows.h... no checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating config.h config.status: executing depfiles commands debian/rules override_dh_auto_build make[1]: Entering directory '/build/vsearch-2.22.1' dh_auto_build make -j8 make[2]: Entering directory '/build/vsearch-2.22.1' make all-recursive make[3]: Entering directory '/build/vsearch-2.22.1' Making all in src make[4]: Entering directory '/build/vsearch-2.22.1/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o align.o align.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o align_simd.o align_simd.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o allpairs.o allpairs.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o arch.o arch.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o attributes.o attributes.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o bitmap.o bitmap.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o chimera.o chimera.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o cluster.o cluster.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o cut.o cut.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o db.o db.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o dbhash.o dbhash.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o dbindex.o dbindex.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o derep.o derep.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o derepsmallmem.o derepsmallmem.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o dynlibs.o dynlibs.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o eestats.o eestats.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o fa2fq.o fa2fq.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o fasta.o fasta.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o fastq.o fastq.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o fastqjoin.o fastqjoin.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o fastqops.o fastqops.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o fastx.o fastx.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o filter.o filter.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o getseq.o getseq.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o kmerhash.o kmerhash.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o linmemalign.o linmemalign.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o maps.o maps.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o mask.o mask.cc gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o md5.o md5.c g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o mergepairs.o mergepairs.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o minheap.o minheap.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o msa.o msa.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o orient.o orient.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o otutable.o otutable.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o rerep.o rerep.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o results.o results.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o search.o search.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o searchcore.o searchcore.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o searchexact.o searchexact.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o sffconvert.o sffconvert.cc gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sha1.o sha1.c g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o showalign.o showalign.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o shuffle.o shuffle.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o sintax.o sintax.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o sortbylength.o sortbylength.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o sortbysize.o sortbysize.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o subsample.o subsample.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o tax.o tax.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o udb.o udb.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o unique.o unique.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o userfields.o userfields.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o util.o util.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o vsearch.o vsearch.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -Wno-sign-compare -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o libcityhash_a-city.o `test -f 'city.cc' || echo './'`city.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o cpu.o cpu.cc rm -f libcityhash.a ar cru libcityhash.a libcityhash_a-city.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcityhash.a rm -f libcpu.a ar cru libcpu.a cpu.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcpu.a g++ -Wall -Wsign-compare -march=armv8-a+simd -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-2.22.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -Wl,-z,relro -Wl,-z,now -flto -o ../bin/vsearch align.o align_simd.o allpairs.o arch.o attributes.o bitmap.o chimera.o cluster.o cut.o db.o dbhash.o dbindex.o derep.o derepsmallmem.o dynlibs.o eestats.o fa2fq.o fasta.o fastq.o fastqjoin.o fastqops.o fastx.o filter.o getseq.o kmerhash.o linmemalign.o maps.o mask.o md5.o mergepairs.o minheap.o msa.o orient.o otutable.o rerep.o results.o search.o searchcore.o searchexact.o sffconvert.o sha1.o showalign.o shuffle.o sintax.o sortbylength.o sortbysize.o subsample.o tax.o udb.o unique.o userfields.o util.o vsearch.o libcityhash.a libcpu.a -ldl -lpthread derep.cc:65:8: warning: type 'struct bucket' violates the C++ One Definition Rule [-Wodr] 65 | struct bucket | ^ derepsmallmem.cc:65:8: note: a different type is defined in another translation unit 65 | struct bucket | ^ derep.cc:67:12: note: the first difference of corresponding definitions is field 'hash' 67 | uint64_t hash; | ^ derepsmallmem.cc:67:11: note: a field of same name but different type is defined in another translation unit 67 | uint128 hash; | ^ derep.cc:65:8: note: type 'uint64_t' should match type 'struct uint128' 65 | struct bucket | ^ lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information make[4]: Leaving directory '/build/vsearch-2.22.1/src' Making all in man make[4]: Entering directory '/build/vsearch-2.22.1/man' sed -e 's/\\-/-/g' vsearch.1 | \ iconv -f UTF-8 -t ISO-8859-1 | \ groff -W space -t -m mandoc -T ps -P -pa4 | ps2pdf - vsearch_manual.pdf make[4]: Leaving directory '/build/vsearch-2.22.1/man' make[4]: Entering directory '/build/vsearch-2.22.1' make[4]: Leaving directory '/build/vsearch-2.22.1' make[3]: Leaving directory '/build/vsearch-2.22.1' make[2]: Leaving directory '/build/vsearch-2.22.1' markdown README.md > README.html # Remove redundant travis-build URL sed -i 1d README.html make[1]: Leaving directory '/build/vsearch-2.22.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/vsearch-2.22.1' if [ -d /usr/share/vsearch/data ] ; then \ mkdir -p ../vsearch-data && \ for datadir in `find /usr/share/vsearch/data -type d | sed -e "s#/usr/share/vsearch/data/*##" -e "/^$/d"` ; do mkdir -p ../vsearch-data/${datadir} ; done && \ for datafile in `find /usr/share/vsearch/data -type f` ; do \ ln -s ${datafile} `echo ${datafile} | sed -e "s#/usr/share/vsearch/data/#../vsearch-data/#"` ; \ done && \ zcat ../vsearch-data/BioMarKs.fsa.gz > ../vsearch-data/BioMarKs.fsa && \ cd test && \ for t in *.sh ; do \ bash $t v ; \ done && \ cd .. && \ rm -rf ../vsearch-data ; \ fi make[1]: Leaving directory '/build/vsearch-2.22.1' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j8 install DESTDIR=/build/vsearch-2.22.1/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/vsearch-2.22.1' Making install in src make[2]: Entering directory '/build/vsearch-2.22.1/src' make[3]: Entering directory '/build/vsearch-2.22.1/src' /usr/bin/mkdir -p '/build/vsearch-2.22.1/debian/tmp/usr/bin' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/install -c ../bin/vsearch '/build/vsearch-2.22.1/debian/tmp/usr/bin' make[3]: Leaving directory '/build/vsearch-2.22.1/src' make[2]: Leaving directory '/build/vsearch-2.22.1/src' Making install in man make[2]: Entering directory '/build/vsearch-2.22.1/man' make[3]: Entering directory '/build/vsearch-2.22.1/man' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/vsearch-2.22.1/debian/tmp/usr/share/doc/vsearch' /usr/bin/install -c -m 644 vsearch_manual.pdf '/build/vsearch-2.22.1/debian/tmp/usr/share/doc/vsearch' /usr/bin/mkdir -p '/build/vsearch-2.22.1/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 vsearch.1 '/build/vsearch-2.22.1/debian/tmp/usr/share/man/man1' make[3]: Leaving directory '/build/vsearch-2.22.1/man' make[2]: Leaving directory '/build/vsearch-2.22.1/man' make[2]: Entering directory '/build/vsearch-2.22.1' make[3]: Entering directory '/build/vsearch-2.22.1' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/vsearch-2.22.1' make[2]: Leaving directory '/build/vsearch-2.22.1' make[1]: Leaving directory '/build/vsearch-2.22.1' debian/rules override_dh_install make[1]: Entering directory '/build/vsearch-2.22.1' dh_install if [ -d test ] ; then \ # tweak path tp vsearch binary in test scripts \ mkdir -p /build/vsearch-2.22.1/debian/vsearch/usr/share/doc/vsearch/test ; \ for tst in test/*.sh ; do sed 's?\.\./bin/vsearch?/usr/bin/vsearch?' ${tst} > /build/vsearch-2.22.1/debian/vsearch/usr/share/doc/vsearch/${tst} ; done ; \ fi make[1]: Leaving directory '/build/vsearch-2.22.1' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package vsearch-examples: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'vsearch-dbgsym' in '../vsearch-dbgsym_2.22.1-1_arm64.deb'. dpkg-deb: building package 'vsearch-examples' in '../vsearch-examples_2.22.1-1_arm64.deb'. dpkg-deb: building package 'vsearch' in '../vsearch_2.22.1-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../vsearch_2.22.1-1_arm64.buildinfo dpkg-genchanges --build=binary -O../vsearch_2.22.1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/357/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/357/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/357 and its subdirectories I: Current time: Fri Apr 21 02:34:53 +14 2023 I: pbuilder-time-stamp: 1681994093