I: pbuilder: network access will be disabled during build
I: Current time: Sat Apr 22 23:03:42 +14 2023
I: pbuilder-time-stamp: 1682154222
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [seqkit_2.3.1+ds-1.dsc]
I: copying [./seqkit_2.3.1+ds.orig.tar.xz]
I: copying [./seqkit_2.3.1+ds-1.debian.tar.xz]
I: Extracting source
gpgv: Signature made Fri Sep 30 01:36:28 2022 +14
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./seqkit_2.3.1+ds-1.dsc: no acceptable signature found
dpkg-source: info: extracting seqkit in seqkit-2.3.1+ds
dpkg-source: info: unpacking seqkit_2.3.1+ds.orig.tar.xz
dpkg-source: info: unpacking seqkit_2.3.1+ds-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use-upstream-go-logger.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/12863/tmp/hooks/D01_modify_environment starting
debug: Running on codethink12-arm64.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Apr 22 23:03 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/12863/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/12863/tmp/hooks/D02_print_environment starting
I: set
  BASH=/bin/sh
  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
  BASH_ALIASES=()
  BASH_ARGC=()
  BASH_ARGV=()
  BASH_CMDS=()
  BASH_LINENO=([0]="12" [1]="0")
  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
  BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu")
  BASH_VERSION='5.2.15(1)-release'
  BUILDDIR=/build
  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
  BUILDUSERNAME=pbuilder2
  BUILD_ARCH=arm64
  DEBIAN_FRONTEND=noninteractive
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8'
  DIRSTACK=()
  DISTRIBUTION=bookworm
  EUID=0
  FUNCNAME=([0]="Echo" [1]="main")
  GROUPS=()
  HOME=/var/lib/jenkins
  HOSTNAME=i-capture-the-hostname
  HOSTTYPE=aarch64
  HOST_ARCH=arm64
  IFS=' 	
  '
  LANG=C
  LANGUAGE=nl_BE:nl
  LC_ALL=C
  MACHTYPE=aarch64-unknown-linux-gnu
  MAIL=/var/mail/root
  OPTERR=1
  OPTIND=1
  OSTYPE=linux-gnu
  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
  PBCURRENTCOMMANDLINEOPERATION=build
  PBUILDER_OPERATION=build
  PBUILDER_PKGDATADIR=/usr/share/pbuilder
  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
  PBUILDER_SYSCONFDIR=/etc
  PIPESTATUS=([0]="0")
  POSIXLY_CORRECT=y
  PPID=12863
  PS4='+ '
  PWD=/
  SHELL=/bin/bash
  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
  SHLVL=3
  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.K37zSnqN/pbuilderrc_rdyb --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.K37zSnqN/b2 --logfile b2/build.log --extrapackages usrmerge seqkit_2.3.1+ds-1.dsc'
  SUDO_GID=117
  SUDO_UID=110
  SUDO_USER=jenkins
  TERM=unknown
  TZ=/usr/share/zoneinfo/Etc/GMT-14
  UID=0
  USER=root
  USERNAME=root
  _='I: set'
  http_proxy=http://192.168.101.16:3128
I: uname -a
  Linux i-capture-the-hostname 4.15.0-209-generic #220-Ubuntu SMP Tue Mar 21 19:52:44 UTC 2023 aarch64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Apr 22 00:25 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/12863/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-biogo-dev, golang-github-biogo-hts-dev, golang-github-bsipos-thist-dev, golang-github-cespare-xxhash-dev, golang-github-cznic-sortutil-dev, golang-github-dustin-go-humanize-dev, golang-github-fsnotify-fsnotify-dev, golang-github-logrusorgru-aurora-dev, golang-github-mattn-go-colorable-dev, golang-github-mattn-go-isatty-dev, golang-github-mitchellh-go-homedir-dev, golang-github-op-go-logging-dev, golang-github-shenwei356-bio-dev (>= 0.6.0~), golang-github-shenwei356-bwt-dev (>= 0.5.1~), golang-github-spf13-cobra-dev, golang-github-tatsushid-go-prettytable-dev, golang-github-iafan-cwalk-dev, golang-github-smallfish-simpleyaml-dev, golang-github-twotwotwo-sorts-dev, samtools
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19616 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-golang; however:
  Package dh-golang is not installed.
 pbuilder-satisfydepends-dummy depends on golang-any; however:
  Package golang-any is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-biogo-biogo-dev; however:
  Package golang-github-biogo-biogo-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-biogo-hts-dev; however:
  Package golang-github-biogo-hts-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-bsipos-thist-dev; however:
  Package golang-github-bsipos-thist-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-cespare-xxhash-dev; however:
  Package golang-github-cespare-xxhash-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-cznic-sortutil-dev; however:
  Package golang-github-cznic-sortutil-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-dustin-go-humanize-dev; however:
  Package golang-github-dustin-go-humanize-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-fsnotify-fsnotify-dev; however:
  Package golang-github-fsnotify-fsnotify-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-logrusorgru-aurora-dev; however:
  Package golang-github-logrusorgru-aurora-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-mattn-go-colorable-dev; however:
  Package golang-github-mattn-go-colorable-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-mattn-go-isatty-dev; however:
  Package golang-github-mattn-go-isatty-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-mitchellh-go-homedir-dev; however:
  Package golang-github-mitchellh-go-homedir-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-op-go-logging-dev; however:
  Package golang-github-op-go-logging-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-shenwei356-bio-dev (>= 0.6.0~); however:
  Package golang-github-shenwei356-bio-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-shenwei356-bwt-dev (>= 0.5.1~); however:
  Package golang-github-shenwei356-bwt-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-spf13-cobra-dev; however:
  Package golang-github-spf13-cobra-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-tatsushid-go-prettytable-dev; however:
  Package golang-github-tatsushid-go-prettytable-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-iafan-cwalk-dev; however:
  Package golang-github-iafan-cwalk-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-smallfish-simpleyaml-dev; however:
  Package golang-github-smallfish-simpleyaml-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-twotwotwo-sorts-dev; however:
  Package golang-github-twotwotwo-sorts-dev is not installed.
 pbuilder-satisfydepends-dummy depends on samtools; however:
  Package samtools is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-golang{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} golang-1.19-go{a} golang-1.19-src{a} golang-any{a} golang-github-ajstarks-svgo-dev{a} golang-github-biogo-biogo-dev{a} golang-github-biogo-hts-dev{a} golang-github-bsipos-thist-dev{a} golang-github-burntsushi-toml-dev{a} golang-github-cespare-xxhash-dev{a} golang-github-cpuguy83-go-md2man-v2-dev{a} golang-github-creack-pty-dev{a} golang-github-cznic-mathutil-dev{a} golang-github-cznic-sortutil-dev{a} golang-github-davecgh-go-spew-dev{a} golang-github-dustin-go-humanize-dev{a} golang-github-edsrzf-mmap-go-dev{a} golang-github-fogleman-gg-dev{a} golang-github-fsnotify-fsnotify-dev{a} golang-github-golang-freetype-dev{a} golang-github-hashicorp-hcl-dev{a} golang-github-iafan-cwalk-dev{a} golang-github-jung-kurt-gofpdf-dev{a} golang-github-klauspost-compress-dev{a} golang-github-klauspost-pgzip-dev{a} golang-github-kr-fs-dev{a} golang-github-kr-pretty-dev{a} golang-github-kr-text-dev{a} golang-github-logrusorgru-aurora-dev{a} golang-github-magiconair-properties-dev{a} golang-github-mattn-go-colorable-dev{a} golang-github-mattn-go-isatty-dev{a} golang-github-mattn-go-runewidth-dev{a} golang-github-mitchellh-go-homedir-dev{a} golang-github-mitchellh-mapstructure-dev{a} golang-github-op-go-logging-dev{a} golang-github-pelletier-go-toml-dev{a} golang-github-pkg-diff-dev{a} golang-github-pkg-errors-dev{a} golang-github-pkg-sftp-dev{a} golang-github-pmezard-go-difflib-dev{a} golang-github-remyoudompheng-bigfft-dev{a} golang-github-rivo-uniseg-dev{a} golang-github-rogpeppe-go-internal-dev{a} golang-github-russross-blackfriday-v2-dev{a} golang-github-shenwei356-bio-dev{a} golang-github-shenwei356-bpool-dev{a} golang-github-shenwei356-breader-dev{a} golang-github-shenwei356-bwt-dev{a} golang-github-shenwei356-natsort-dev{a} golang-github-shenwei356-util-dev{a} golang-github-shenwei356-xopen-dev{a} golang-github-shurcool-sanitized-anchor-name-dev{a} golang-github-smallfish-simpleyaml-dev{a} golang-github-spf13-afero-dev{a} golang-github-spf13-cast-dev{a} golang-github-spf13-cobra-dev{a} golang-github-spf13-jwalterweatherman-dev{a} golang-github-spf13-pflag-dev{a} golang-github-spf13-viper-dev{a} golang-github-stretchr-objx-dev{a} golang-github-stretchr-testify-dev{a} golang-github-subosito-gotenv-dev{a} golang-github-tatsushid-go-prettytable-dev{a} golang-github-twotwotwo-sorts-dev{a} golang-github-ulikunitz-xz-dev{a} golang-go{a} golang-golang-x-crypto-dev{a} golang-golang-x-exp-dev{a} golang-golang-x-image-dev{a} golang-golang-x-net-dev{a} golang-golang-x-sys-dev{a} golang-golang-x-term-dev{a} golang-golang-x-text-dev{a} golang-gonum-v1-plot-dev{a} golang-gopkg-check.v1-dev{a} golang-gopkg-ini.v1-dev{a} golang-gopkg-yaml.v2-dev{a} golang-gopkg-yaml.v3-dev{a} golang-src{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libfile-stripnondeterminism-perl{a} libhts3{a} libhtscodecs2{a} libicu72{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} samtools{a} sensible-utils{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx pkg-config pkgconf publicsuffix wget 
0 packages upgraded, 124 newly installed, 0 to remove and 0 not upgraded.
Need to get 145 MB of archives. After unpacking 698 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 2 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB]
Get: 3 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB]
Get: 4 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB]
Get: 5 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB]
Get: 6 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB]
Get: 7 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB]
Get: 8 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB]
Get: 9 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB]
Get: 10 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB]
Get: 11 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB]
Get: 12 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB]
Get: 13 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get: 15 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB]
Get: 16 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 17 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB]
Get: 18 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B]
Get: 21 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 22 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 23 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB]
Get: 24 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB]
Get: 25 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB]
Get: 26 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.1+b3 [619 kB]
Get: 27 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB]
Get: 28 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB]
Get: 31 http://deb.debian.org/debian bookworm/main arm64 dh-golang all 1.59 [27.8 kB]
Get: 32 http://deb.debian.org/debian bookworm/main arm64 golang-1.19-src all 1.19.8-2 [18.3 MB]
Get: 33 http://deb.debian.org/debian bookworm/main arm64 golang-1.19-go arm64 1.19.8-2 [56.6 MB]
Get: 34 http://deb.debian.org/debian bookworm/main arm64 golang-src all 2:1.19~1 [5756 B]
Get: 35 http://deb.debian.org/debian bookworm/main arm64 golang-go arm64 2:1.19~1 [45.0 kB]
Get: 36 http://deb.debian.org/debian bookworm/main arm64 golang-any arm64 2:1.19~1 [5876 B]
Get: 37 http://deb.debian.org/debian bookworm/main arm64 golang-github-ajstarks-svgo-dev all 2012-01-27-3 [12.9 kB]
Get: 38 http://deb.debian.org/debian bookworm/main arm64 golang-github-ulikunitz-xz-dev all 0.5.6-2 [352 kB]
Get: 39 http://deb.debian.org/debian bookworm/main arm64 golang-github-biogo-hts-dev all 1.4.4+dfsg1-1 [319 kB]
Get: 40 http://deb.debian.org/debian bookworm/main arm64 golang-github-creack-pty-dev all 1.1.18-1 [9796 B]
Get: 41 http://deb.debian.org/debian bookworm/main arm64 golang-github-kr-text-dev all 0.2.0-2 [10.2 kB]
Get: 42 http://deb.debian.org/debian bookworm/main arm64 golang-github-pkg-diff-dev all 0.0~git20210226.20ebb0f-1 [93.6 kB]
Get: 43 http://deb.debian.org/debian bookworm/main arm64 golang-github-rogpeppe-go-internal-dev all 1.9.0-1 [117 kB]
Get: 44 http://deb.debian.org/debian bookworm/main arm64 golang-github-kr-pretty-dev all 0.3.0-1 [14.9 kB]
Get: 45 http://deb.debian.org/debian bookworm/main arm64 golang-gopkg-check.v1-dev all 0.0+git20200902.038fdea-1 [32.1 kB]
Get: 46 http://deb.debian.org/debian bookworm/main arm64 golang-github-biogo-biogo-dev all 1.0.4-1 [189 kB]
Get: 47 http://deb.debian.org/debian bookworm/main arm64 golang-golang-x-exp-dev all 0.0~git20221028.83b7d23-2 [104 kB]
Get: 48 http://deb.debian.org/debian bookworm/main arm64 golang-golang-x-text-dev all 0.7.0-1 [3863 kB]
Get: 49 http://deb.debian.org/debian bookworm/main arm64 golang-golang-x-image-dev all 0.5.0-1 [2971 kB]
Get: 50 http://deb.debian.org/debian bookworm/main arm64 golang-github-jung-kurt-gofpdf-dev all 2.17.2+ds-3 [954 kB]
Get: 51 http://deb.debian.org/debian bookworm/main arm64 golang-github-golang-freetype-dev all 0.0~git20170609.e2365df+dfsg-2 [54.0 kB]
Get: 52 http://deb.debian.org/debian bookworm/main arm64 golang-github-fogleman-gg-dev all 1.3.0-3 [14.8 kB]
Get: 53 http://deb.debian.org/debian bookworm/main arm64 golang-gonum-v1-plot-dev all 0.7.0-5 [4804 kB]
Get: 54 http://deb.debian.org/debian bookworm/main arm64 golang-github-bsipos-thist-dev all 1.0.0-2 [8636 B]
Get: 55 http://deb.debian.org/debian bookworm/main arm64 golang-github-burntsushi-toml-dev all 1.2.0-2 [90.8 kB]
Get: 56 http://deb.debian.org/debian bookworm/main arm64 golang-github-pmezard-go-difflib-dev all 1.0.0-3 [12.3 kB]
Get: 57 http://deb.debian.org/debian bookworm/main arm64 golang-github-shurcool-sanitized-anchor-name-dev all 1.0.0-3 [3748 B]
Get: 58 http://deb.debian.org/debian bookworm/main arm64 golang-github-russross-blackfriday-v2-dev all 2.1.0-1 [76.1 kB]
Get: 59 http://deb.debian.org/debian bookworm/main arm64 golang-github-cpuguy83-go-md2man-v2-dev all 2.0.2+ds1-1 [10.9 kB]
Get: 60 http://deb.debian.org/debian bookworm/main arm64 golang-github-remyoudompheng-bigfft-dev all 0.0+git20190728.6a916e3-2 [13.8 kB]
Get: 61 http://deb.debian.org/debian bookworm/main arm64 golang-github-cznic-mathutil-dev all 0.0~git20201220.c6aa83b-2 [75.9 kB]
Get: 62 http://deb.debian.org/debian bookworm/main arm64 golang-github-cznic-sortutil-dev all 0.0~git20150617.0.4c73428-3 [5420 B]
Get: 63 http://deb.debian.org/debian bookworm/main arm64 golang-github-davecgh-go-spew-dev all 1.1.1-3 [30.1 kB]
Get: 64 http://deb.debian.org/debian bookworm/main arm64 golang-github-dustin-go-humanize-dev all 1.0.0-3 [16.4 kB]
Get: 65 http://deb.debian.org/debian bookworm/main arm64 golang-golang-x-sys-dev all 0.3.0-1 [393 kB]
Get: 66 http://deb.debian.org/debian bookworm/main arm64 golang-github-edsrzf-mmap-go-dev all 1.1.0-1 [8532 B]
Get: 67 http://deb.debian.org/debian bookworm/main arm64 golang-github-fsnotify-fsnotify-dev all 1.6.0-2 [38.3 kB]
Get: 68 http://deb.debian.org/debian bookworm/main arm64 golang-github-hashicorp-hcl-dev all 1.0.0-1.1 [58.8 kB]
Get: 69 http://deb.debian.org/debian bookworm/main arm64 golang-github-iafan-cwalk-dev all 0.0~git20191125.dd7f505-3 [6128 B]
Get: 70 http://deb.debian.org/debian bookworm/main arm64 golang-github-cespare-xxhash-dev all 2.1.1-2 [8888 B]
Get: 71 http://deb.debian.org/debian bookworm/main arm64 golang-github-klauspost-compress-dev all 1.15.12+ds1-3 [30.8 MB]
Get: 72 http://deb.debian.org/debian bookworm/main arm64 golang-github-klauspost-pgzip-dev all 1.2.5-2 [115 kB]
Get: 73 http://deb.debian.org/debian bookworm/main arm64 golang-github-kr-fs-dev all 0.1.0-2 [6412 B]
Get: 74 http://deb.debian.org/debian bookworm/main arm64 golang-github-logrusorgru-aurora-dev all 3.0.0-2 [19.0 kB]
Get: 75 http://deb.debian.org/debian bookworm/main arm64 golang-github-magiconair-properties-dev all 1.8.7-1 [29.5 kB]
Get: 76 http://deb.debian.org/debian bookworm/main arm64 golang-github-mattn-go-isatty-dev all 0.0.17-1 [6016 B]
Get: 77 http://deb.debian.org/debian bookworm/main arm64 golang-github-mattn-go-colorable-dev all 0.1.13-1 [10.3 kB]
Get: 78 http://deb.debian.org/debian bookworm/main arm64 golang-github-rivo-uniseg-dev all 0.4.2-1 [253 kB]
Get: 79 http://deb.debian.org/debian bookworm/main arm64 golang-github-mattn-go-runewidth-dev all 0.0.14-1 [15.8 kB]
Get: 80 http://deb.debian.org/debian bookworm/main arm64 golang-github-mitchellh-go-homedir-dev all 1.1.0-1 [5168 B]
Get: 81 http://deb.debian.org/debian bookworm/main arm64 golang-github-mitchellh-mapstructure-dev all 1.5.0-2 [29.0 kB]
Get: 82 http://deb.debian.org/debian bookworm/main arm64 golang-github-op-go-logging-dev all 1+git20160315.970db52-2 [17.5 kB]
Get: 83 http://deb.debian.org/debian bookworm/main arm64 golang-gopkg-yaml.v2-dev all 2.4.0-4 [61.5 kB]
Get: 84 http://deb.debian.org/debian bookworm/main arm64 golang-github-pelletier-go-toml-dev all 1.9.4-1 [78.2 kB]
Get: 85 http://deb.debian.org/debian bookworm/main arm64 golang-github-pkg-errors-dev all 0.9.1-2 [13.2 kB]
Get: 86 http://deb.debian.org/debian bookworm/main arm64 golang-golang-x-net-dev all 1:0.7.0+dfsg-1 [731 kB]
Get: 87 http://deb.debian.org/debian bookworm/main arm64 golang-golang-x-term-dev all 0.3.0-1 [14.6 kB]
Get: 88 http://deb.debian.org/debian bookworm/main arm64 golang-golang-x-crypto-dev all 1:0.4.0-1 [1449 kB]
Get: 89 http://deb.debian.org/debian bookworm/main arm64 golang-github-pkg-sftp-dev all 1.13.5-2 [97.5 kB]
Get: 90 http://deb.debian.org/debian bookworm/main arm64 golang-github-twotwotwo-sorts-dev all 0.0~git20160814.bf5c1f2-3 [19.7 kB]
Get: 91 http://deb.debian.org/debian bookworm/main arm64 golang-github-shenwei356-xopen-dev all 0.0~git20181203.f4f16dd-2 [6036 B]
Get: 92 http://deb.debian.org/debian bookworm/main arm64 golang-github-shenwei356-breader-dev all 0.3.1-1 [5972 B]
Get: 93 http://deb.debian.org/debian bookworm/main arm64 golang-github-spf13-pflag-dev all 1.0.6~git20210604-d5e0c0615ace-1 [43.0 kB]
Get: 94 http://deb.debian.org/debian bookworm/main arm64 golang-github-spf13-afero-dev all 1.9.3-1 [62.1 kB]
Get: 95 http://deb.debian.org/debian bookworm/main arm64 golang-github-spf13-cast-dev all 1.5.0-2 [13.8 kB]
Get: 96 http://deb.debian.org/debian bookworm/main arm64 golang-github-stretchr-objx-dev all 0.5.0-1 [25.5 kB]
Get: 97 http://deb.debian.org/debian bookworm/main arm64 golang-gopkg-yaml.v3-dev all 3.0.1-3 [74.3 kB]
Get: 98 http://deb.debian.org/debian bookworm/main arm64 golang-github-stretchr-testify-dev all 1.8.1-1 [67.9 kB]
Get: 99 http://deb.debian.org/debian bookworm/main arm64 golang-github-spf13-jwalterweatherman-dev all 1.1.0+really1.1.0-2 [8084 B]
Get: 100 http://deb.debian.org/debian bookworm/main arm64 golang-github-subosito-gotenv-dev all 1.2.0+git20190917.de67a66-3 [8276 B]
Get: 101 http://deb.debian.org/debian bookworm/main arm64 golang-gopkg-ini.v1-dev all 1.66.2-1 [40.0 kB]
Get: 102 http://deb.debian.org/debian bookworm/main arm64 golang-github-spf13-viper-dev all 1.10.1-1 [64.4 kB]
Get: 103 http://deb.debian.org/debian bookworm/main arm64 golang-github-spf13-cobra-dev all 1.6.1-1 [69.5 kB]
Get: 104 http://deb.debian.org/debian bookworm/main arm64 golang-github-shenwei356-bpool-dev all 0.0~git20160710.f9e0ee4-3 [4692 B]
Get: 105 http://deb.debian.org/debian bookworm/main arm64 golang-github-shenwei356-natsort-dev all 0.0~git20190418.600d539-3 [3812 B]
Get: 106 http://deb.debian.org/debian bookworm/main arm64 golang-github-shenwei356-util-dev all 0.5.0-1 [35.1 kB]
Get: 107 http://deb.debian.org/debian bookworm/main arm64 golang-github-shenwei356-bio-dev all 0.6.2-1 [64.0 kB]
Get: 108 http://deb.debian.org/debian bookworm/main arm64 golang-github-shenwei356-bwt-dev all 0.6.0-2 [7452 B]
Get: 109 http://deb.debian.org/debian bookworm/main arm64 golang-github-smallfish-simpleyaml-dev all 0.0~git20170911.a320310-2 [4692 B]
Get: 110 http://deb.debian.org/debian bookworm/main arm64 golang-github-tatsushid-go-prettytable-dev all 0.0~git20141013.ed2d14c-3 [5492 B]
Get: 111 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB]
Get: 112 http://deb.debian.org/debian bookworm/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-10 [20.8 kB]
Get: 113 http://deb.debian.org/debian bookworm/main arm64 libsasl2-2 arm64 2.1.28+dfsg-10 [58.0 kB]
Get: 114 http://deb.debian.org/debian bookworm/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-5 [171 kB]
Get: 115 http://deb.debian.org/debian bookworm/main arm64 libnghttp2-14 arm64 1.52.0-1 [67.9 kB]
Get: 116 http://deb.debian.org/debian bookworm/main arm64 libpsl5 arm64 0.21.2-1 [58.6 kB]
Get: 117 http://deb.debian.org/debian bookworm/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB]
Get: 118 http://deb.debian.org/debian bookworm/main arm64 libssh2-1 arm64 1.10.0-3+b1 [172 kB]
Get: 119 http://deb.debian.org/debian bookworm/main arm64 libcurl3-gnutls arm64 7.88.1-8 [357 kB]
Get: 120 http://deb.debian.org/debian bookworm/main arm64 libdeflate0 arm64 1.14-1 [54.3 kB]
Get: 121 http://deb.debian.org/debian bookworm/main arm64 libhtscodecs2 arm64 1.3.0-4 [70.5 kB]
Get: 122 http://deb.debian.org/debian bookworm/main arm64 libhts3 arm64 1.16+ds-3 [392 kB]
Get: 123 http://deb.debian.org/debian bookworm/main arm64 libncurses6 arm64 6.4-2 [94.0 kB]
Get: 124 http://deb.debian.org/debian bookworm/main arm64 samtools arm64 1.16.1-1 [580 kB]
Fetched 145 MB in 3s (49.8 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sensible-utils.
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(Reading database ... 19616 files and directories currently installed.)
Preparing to unpack .../000-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package libmagic-mgc.
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Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:arm64.
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Unpacking libmagic1:arm64 (1:5.44-3) ...
Selecting previously unselected package file.
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Unpacking file (1:5.44-3) ...
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Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:arm64.
Preparing to unpack .../005-libuchardet0_0.0.7-1_arm64.deb ...
Unpacking libuchardet0:arm64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../006-groff-base_1.22.4-10_arm64.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../007-bsdextrautils_2.38.1-5+b1_arm64.deb ...
Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:arm64.
Preparing to unpack .../008-libpipeline1_1.5.7-1_arm64.deb ...
Unpacking libpipeline1:arm64 (1.5.7-1) ...
Selecting previously unselected package man-db.
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Unpacking man-db (2.11.2-2) ...
Selecting previously unselected package m4.
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Unpacking m4 (1.4.19-3) ...
Selecting previously unselected package autoconf.
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Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../012-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../013-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
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Unpacking autopoint (0.21-12) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../015-libdebhelper-perl_13.11.4_all.deb ...
Unpacking libdebhelper-perl (13.11.4) ...
Selecting previously unselected package libtool.
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Unpacking libtool (2.4.7-5) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../017-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../018-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
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Unpacking libsub-override-perl (0.09-4) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../020-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
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Unpacking dh-strip-nondeterminism (1.13.1-1) ...
Selecting previously unselected package libelf1:arm64.
Preparing to unpack .../022-libelf1_0.188-2.1_arm64.deb ...
Unpacking libelf1:arm64 (0.188-2.1) ...
Selecting previously unselected package dwz.
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Unpacking dwz (0.15-1) ...
Selecting previously unselected package libicu72:arm64.
Preparing to unpack .../024-libicu72_72.1-3_arm64.deb ...
Unpacking libicu72:arm64 (72.1-3) ...
Selecting previously unselected package libxml2:arm64.
Preparing to unpack .../025-libxml2_2.9.14+dfsg-1.1+b3_arm64.deb ...
Unpacking libxml2:arm64 (2.9.14+dfsg-1.1+b3) ...
Selecting previously unselected package gettext.
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Unpacking gettext (0.21-12) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../027-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
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Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
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Unpacking debhelper (13.11.4) ...
Selecting previously unselected package dh-golang.
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Unpacking dh-golang (1.59) ...
Selecting previously unselected package golang-1.19-src.
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Unpacking golang-1.19-src (1.19.8-2) ...
Selecting previously unselected package golang-1.19-go.
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Unpacking golang-1.19-go (1.19.8-2) ...
Selecting previously unselected package golang-src.
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Unpacking golang-src (2:1.19~1) ...
Selecting previously unselected package golang-go:arm64.
Preparing to unpack .../034-golang-go_2%3a1.19~1_arm64.deb ...
Unpacking golang-go:arm64 (2:1.19~1) ...
Selecting previously unselected package golang-any:arm64.
Preparing to unpack .../035-golang-any_2%3a1.19~1_arm64.deb ...
Unpacking golang-any:arm64 (2:1.19~1) ...
Selecting previously unselected package golang-github-ajstarks-svgo-dev.
Preparing to unpack .../036-golang-github-ajstarks-svgo-dev_2012-01-27-3_all.deb ...
Unpacking golang-github-ajstarks-svgo-dev (2012-01-27-3) ...
Selecting previously unselected package golang-github-ulikunitz-xz-dev.
Preparing to unpack .../037-golang-github-ulikunitz-xz-dev_0.5.6-2_all.deb ...
Unpacking golang-github-ulikunitz-xz-dev (0.5.6-2) ...
Selecting previously unselected package golang-github-biogo-hts-dev.
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Unpacking golang-github-biogo-hts-dev (1.4.4+dfsg1-1) ...
Selecting previously unselected package golang-github-creack-pty-dev.
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Unpacking golang-github-creack-pty-dev (1.1.18-1) ...
Selecting previously unselected package golang-github-kr-text-dev.
Preparing to unpack .../040-golang-github-kr-text-dev_0.2.0-2_all.deb ...
Unpacking golang-github-kr-text-dev (0.2.0-2) ...
Selecting previously unselected package golang-github-pkg-diff-dev.
Preparing to unpack .../041-golang-github-pkg-diff-dev_0.0~git20210226.20ebb0f-1_all.deb ...
Unpacking golang-github-pkg-diff-dev (0.0~git20210226.20ebb0f-1) ...
Selecting previously unselected package golang-github-rogpeppe-go-internal-dev.
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Unpacking golang-github-rogpeppe-go-internal-dev (1.9.0-1) ...
Selecting previously unselected package golang-github-kr-pretty-dev.
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Unpacking golang-github-kr-pretty-dev (0.3.0-1) ...
Selecting previously unselected package golang-gopkg-check.v1-dev.
Preparing to unpack .../044-golang-gopkg-check.v1-dev_0.0+git20200902.038fdea-1_all.deb ...
Unpacking golang-gopkg-check.v1-dev (0.0+git20200902.038fdea-1) ...
Selecting previously unselected package golang-github-biogo-biogo-dev.
Preparing to unpack .../045-golang-github-biogo-biogo-dev_1.0.4-1_all.deb ...
Unpacking golang-github-biogo-biogo-dev (1.0.4-1) ...
Selecting previously unselected package golang-golang-x-exp-dev.
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Unpacking golang-golang-x-exp-dev (0.0~git20221028.83b7d23-2) ...
Selecting previously unselected package golang-golang-x-text-dev.
Preparing to unpack .../047-golang-golang-x-text-dev_0.7.0-1_all.deb ...
Unpacking golang-golang-x-text-dev (0.7.0-1) ...
Selecting previously unselected package golang-golang-x-image-dev.
Preparing to unpack .../048-golang-golang-x-image-dev_0.5.0-1_all.deb ...
Unpacking golang-golang-x-image-dev (0.5.0-1) ...
Selecting previously unselected package golang-github-jung-kurt-gofpdf-dev.
Preparing to unpack .../049-golang-github-jung-kurt-gofpdf-dev_2.17.2+ds-3_all.deb ...
Unpacking golang-github-jung-kurt-gofpdf-dev (2.17.2+ds-3) ...
Selecting previously unselected package golang-github-golang-freetype-dev.
Preparing to unpack .../050-golang-github-golang-freetype-dev_0.0~git20170609.e2365df+dfsg-2_all.deb ...
Unpacking golang-github-golang-freetype-dev (0.0~git20170609.e2365df+dfsg-2) ...
Selecting previously unselected package golang-github-fogleman-gg-dev.
Preparing to unpack .../051-golang-github-fogleman-gg-dev_1.3.0-3_all.deb ...
Unpacking golang-github-fogleman-gg-dev (1.3.0-3) ...
Selecting previously unselected package golang-gonum-v1-plot-dev.
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Unpacking golang-gonum-v1-plot-dev (0.7.0-5) ...
Selecting previously unselected package golang-github-bsipos-thist-dev.
Preparing to unpack .../053-golang-github-bsipos-thist-dev_1.0.0-2_all.deb ...
Unpacking golang-github-bsipos-thist-dev (1.0.0-2) ...
Selecting previously unselected package golang-github-burntsushi-toml-dev.
Preparing to unpack .../054-golang-github-burntsushi-toml-dev_1.2.0-2_all.deb ...
Unpacking golang-github-burntsushi-toml-dev (1.2.0-2) ...
Selecting previously unselected package golang-github-pmezard-go-difflib-dev.
Preparing to unpack .../055-golang-github-pmezard-go-difflib-dev_1.0.0-3_all.deb ...
Unpacking golang-github-pmezard-go-difflib-dev (1.0.0-3) ...
Selecting previously unselected package golang-github-shurcool-sanitized-anchor-name-dev.
Preparing to unpack .../056-golang-github-shurcool-sanitized-anchor-name-dev_1.0.0-3_all.deb ...
Unpacking golang-github-shurcool-sanitized-anchor-name-dev (1.0.0-3) ...
Selecting previously unselected package golang-github-russross-blackfriday-v2-dev.
Preparing to unpack .../057-golang-github-russross-blackfriday-v2-dev_2.1.0-1_all.deb ...
Unpacking golang-github-russross-blackfriday-v2-dev (2.1.0-1) ...
Selecting previously unselected package golang-github-cpuguy83-go-md2man-v2-dev.
Preparing to unpack .../058-golang-github-cpuguy83-go-md2man-v2-dev_2.0.2+ds1-1_all.deb ...
Unpacking golang-github-cpuguy83-go-md2man-v2-dev (2.0.2+ds1-1) ...
Selecting previously unselected package golang-github-remyoudompheng-bigfft-dev.
Preparing to unpack .../059-golang-github-remyoudompheng-bigfft-dev_0.0+git20190728.6a916e3-2_all.deb ...
Unpacking golang-github-remyoudompheng-bigfft-dev (0.0+git20190728.6a916e3-2) ...
Selecting previously unselected package golang-github-cznic-mathutil-dev.
Preparing to unpack .../060-golang-github-cznic-mathutil-dev_0.0~git20201220.c6aa83b-2_all.deb ...
Unpacking golang-github-cznic-mathutil-dev (0.0~git20201220.c6aa83b-2) ...
Selecting previously unselected package golang-github-cznic-sortutil-dev.
Preparing to unpack .../061-golang-github-cznic-sortutil-dev_0.0~git20150617.0.4c73428-3_all.deb ...
Unpacking golang-github-cznic-sortutil-dev (0.0~git20150617.0.4c73428-3) ...
Selecting previously unselected package golang-github-davecgh-go-spew-dev.
Preparing to unpack .../062-golang-github-davecgh-go-spew-dev_1.1.1-3_all.deb ...
Unpacking golang-github-davecgh-go-spew-dev (1.1.1-3) ...
Selecting previously unselected package golang-github-dustin-go-humanize-dev.
Preparing to unpack .../063-golang-github-dustin-go-humanize-dev_1.0.0-3_all.deb ...
Unpacking golang-github-dustin-go-humanize-dev (1.0.0-3) ...
Selecting previously unselected package golang-golang-x-sys-dev.
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Setting up golang-github-shenwei356-bpool-dev (0.0~git20160710.f9e0ee4-3) ...
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Setting up bsdextrautils (2.38.1-5+b1) ...
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Not building database; man-db/auto-update is not 'true'.
Setting up golang-github-biogo-biogo-dev (1.0.4-1) ...
Setting up golang-github-fogleman-gg-dev (1.3.0-3) ...
Setting up golang-gonum-v1-plot-dev (0.7.0-5) ...
Setting up golang-github-spf13-afero-dev (1.9.3-1) ...
Setting up libhts3:arm64 (1.16+ds-3) ...
Setting up debhelper (13.11.4) ...
Setting up samtools (1.16.1-1) ...
Setting up golang-github-bsipos-thist-dev (1.0.0-2) ...
Setting up golang-github-spf13-viper-dev (1.10.1-1) ...
Setting up dh-golang (1.59) ...
Setting up golang-github-spf13-cobra-dev (1.6.1-1) ...
Setting up golang-github-shenwei356-util-dev (0.5.0-1) ...
Setting up golang-github-shenwei356-bio-dev (0.6.2-1) ...
Processing triggers for libc-bin (2.36-9) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
usrmerge is already the newest version (35).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: user script /srv/workspace/pbuilder/12863/tmp/hooks/A99_set_merged_usr starting
Re-configuring usrmerge...
I: user script /srv/workspace/pbuilder/12863/tmp/hooks/A99_set_merged_usr finished
hostname: Temporary failure in name resolution
I: Running cd /build/seqkit-2.3.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../seqkit_2.3.1+ds-1_source.changes
dpkg-buildpackage: info: source package seqkit
dpkg-buildpackage: info: source version 2.3.1+ds-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
dh clean --buildsystem=golang --with=golang --builddirectory=build # --sourcedirectory=seqkit
   dh_auto_clean -O--buildsystem=golang -O--builddirectory=build
   dh_autoreconf_clean -O--buildsystem=golang -O--builddirectory=build
   dh_clean -O--buildsystem=golang -O--builddirectory=build
 debian/rules binary
dh binary --buildsystem=golang --with=golang --builddirectory=build # --sourcedirectory=seqkit
   dh_update_autotools_config -O--buildsystem=golang -O--builddirectory=build
   dh_autoreconf -O--buildsystem=golang -O--builddirectory=build
   dh_auto_configure -O--buildsystem=golang -O--builddirectory=build
   dh_auto_build -O--buildsystem=golang -O--builddirectory=build
	cd build && go install -trimpath -v -p 8 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd
internal/goexperiment
internal/goos
internal/unsafeheader
runtime/internal/syscall
internal/itoa
math/bits
internal/goarch
internal/cpu
unicode/utf8
internal/race
sync/atomic
internal/abi
runtime/internal/math
runtime/internal/sys
unicode
internal/nettrace
image/color
internal/goversion
golang.org/x/image/math/f64
math
runtime/internal/atomic
internal/bytealg
crypto/internal/subtle
crypto/subtle
crypto/internal/boring/sig
encoding
unicode/utf16
image/color/palette
container/list
vendor/golang.org/x/crypto/cryptobyte/asn1
vendor/golang.org/x/crypto/internal/subtle
github.com/ulikunitz/xz/internal/hash
github.com/rivo/uniseg
runtime
github.com/klauspost/compress
github.com/shenwei356/util/math
internal/reflectlite
sync
internal/testlog
internal/singleflight
math/rand
runtime/cgo
github.com/shenwei356/util/randutil
errors
sort
internal/safefilepath
io
internal/oserror
strconv
path
vendor/golang.org/x/net/dns/dnsmessage
gonum.org/v1/plot/palette
syscall
crypto/internal/nistec/fiat
container/heap
github.com/shenwei356/bio/util
bytes
strings
hash
text/tabwriter
hash/crc32
hash/adler32
crypto
reflect
crypto/rc4
github.com/biogo/biogo/feat
bufio
regexp/syntax
go/build/constraint
html
crypto/internal/randutil
image
vendor/golang.org/x/text/transform
net/http/internal/ascii
github.com/twotwotwo/sorts
hash/crc64
internal/syscall/unix
time
internal/syscall/execenv
github.com/twotwotwo/sorts/sortutil
regexp
image/internal/imageutil
image/draw
image/jpeg
golang.org/x/image/draw
github.com/shenwei356/natsort
context
io/fs
internal/poll
embed
os
internal/fmtsort
encoding/binary
crypto/md5
golang.org/x/image/ccitt
crypto/cipher
encoding/base64
github.com/cespare/xxhash
golang.org/x/sys/unix
github.com/klauspost/compress/internal/snapref
fmt
internal/godebug
path/filepath
internal/lazyregexp
io/ioutil
internal/intern
crypto/internal/nistec
crypto/internal/edwards25519/field
net/netip
encoding/pem
crypto/internal/boring
crypto/sha1
os/exec
crypto/aes
crypto/des
crypto/sha512
crypto/internal/edwards25519
net
crypto/hmac
crypto/sha256
internal/goroot
github.com/mitchellh/go-homedir
github.com/biogo/biogo/alphabet
log
encoding/hex
compress/flate
net/url
golang.org/x/image/math/fixed
go/token
go/doc/comment
github.com/golang/freetype/raster
github.com/biogo/biogo/seq
golang.org/x/image/font
go/scanner
github.com/biogo/biogo/io/seqio
github.com/biogo/biogo/seq/linear
github.com/biogo/biogo/io/seqio/fasta
github.com/biogo/biogo/align
compress/gzip
go/ast
github.com/golang/freetype/truetype
github.com/shenwei356/seqkit/benchmark
internal/buildcfg
github.com/biogo/hts/bgzf
github.com/mattn/go-isatty
github.com/mattn/go-colorable
github.com/biogo/hts/bgzf/index
gonum.org/v1/plot/vg/fonts
golang.org/x/term
golang.org/x/image/font/basicfont
github.com/biogo/hts/internal
compress/zlib
golang.org/x/image/tiff/lzw
encoding/gob
github.com/biogo/hts/sam
encoding/json
image/png
go/doc
golang.org/x/crypto/ssh/terminal
go/internal/typeparams
go/parser
golang.org/x/image/tiff
github.com/fogleman/gg
encoding/xml
compress/lzw
image/gif
github.com/biogo/hts/bam
runtime/debug
math/big
github.com/fsnotify/fsnotify
github.com/iafan/cwalk
github.com/klauspost/compress/fse
go/build
github.com/klauspost/compress/flate
github.com/logrusorgru/aurora
github.com/pkg/errors
vendor/golang.org/x/crypto/chacha20
github.com/klauspost/compress/huff0
github.com/jung-kurt/gofpdf
github.com/ajstarks/svgo
gonum.org/v1/plot/vg
vendor/golang.org/x/crypto/internal/poly1305
vendor/golang.org/x/crypto/curve25519/internal/field
gonum.org/v1/plot/vg/vgeps
gonum.org/v1/plot/vg/vgimg
gonum.org/v1/plot/vg/vgsvg
gonum.org/v1/plot/tools/bezier
vendor/golang.org/x/crypto/chacha20poly1305
vendor/golang.org/x/crypto/curve25519
github.com/cznic/sortutil
github.com/dustin/go-humanize
crypto/rand
github.com/klauspost/pgzip
crypto/elliptic
crypto/internal/boring/bbig
encoding/asn1
crypto/dsa
github.com/klauspost/compress/zstd
crypto/ed25519
crypto/rsa
vendor/golang.org/x/crypto/hkdf
vendor/golang.org/x/text/unicode/bidi
vendor/golang.org/x/text/unicode/norm
vendor/golang.org/x/net/http2/hpack
mime
vendor/golang.org/x/crypto/cryptobyte
crypto/x509/pkix
mime/quotedprintable
log/syslog
net/textproto
net/http/internal
github.com/op/go-logging
vendor/golang.org/x/text/secure/bidirule
os/user
crypto/ecdsa
github.com/shenwei356/util/byteutil
mime/multipart
github.com/shenwei356/bio/seq
github.com/edsrzf/mmap-go
crypto/x509
github.com/shenwei356/bio/seqio/fai
index/suffixarray
vendor/golang.org/x/net/idna
github.com/shenwei356/util/pathutil
github.com/shenwei356/util/stringutil
gonum.org/v1/plot/vg/vgpdf
gopkg.in/yaml.v2
github.com/shenwei356/bwt
encoding/csv
gonum.org/v1/plot/vg/draw
flag
github.com/shenwei356/bwt/fmi
text/template/parse
github.com/mattn/go-runewidth
gonum.org/v1/plot
vendor/golang.org/x/net/http/httpguts
vendor/golang.org/x/net/http/httpproxy
github.com/tatsushid/go-prettytable
github.com/spf13/pflag
crypto/tls
github.com/ulikunitz/xz/internal/xlog
os/signal
gonum.org/v1/plot/plotter
github.com/ulikunitz/xz/lzma
text/template
github.com/smallfish/simpleyaml
github.com/ulikunitz/xz
github.com/spf13/cobra
gonum.org/v1/plot/plotutil
github.com/bsipos/thist
net/http/httptrace
net/http
github.com/shenwei356/xopen
github.com/shenwei356/breader
github.com/shenwei356/bio/seqio/fastx
github.com/shenwei356/bio/featio/gtf
github.com/shenwei356/seqkit/seqkit/cmd
github.com/shenwei356/seqkit/seqkit
   dh_auto_test -O--buildsystem=golang -O--builddirectory=build
	cd build && go test -vet=off -v -p 8 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd
?   	github.com/shenwei356/seqkit/benchmark	[no test files]
?   	github.com/shenwei356/seqkit/seqkit	[no test files]
?   	github.com/shenwei356/seqkit/seqkit/cmd	[no test files]
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=golang -O--builddirectory=build
   dh_prep -O--buildsystem=golang -O--builddirectory=build
   debian/rules override_dh_auto_install
make[1]: Map '/build/seqkit-2.3.1+ds' wordt binnengegaan
dh_auto_install -- --no-source
	cd build && mkdir -p /build/seqkit-2.3.1\+ds/debian/tmp/usr
	cd build && cp -r bin /build/seqkit-2.3.1\+ds/debian/tmp/usr
make[1]: Map '/build/seqkit-2.3.1+ds' wordt verlaten
   dh_install -O--buildsystem=golang -O--builddirectory=build
   debian/rules override_dh_installdocs
make[1]: Map '/build/seqkit-2.3.1+ds' wordt binnengegaan
# Regenerate bam and bam index files
cat debian/missing-sources/pcs109_5k_prim.sam | samtools view -Sb - > tests/pcs109_5k_prim.bam
cat debian/missing-sources/pcs109_5k.sam | samtools view -Sb - > tests/pcs109_5k.bam
cat debian/missing-sources/pcs109_5k_spliced.sam | samtools view -Sb - > tests/pcs109_5k_spliced.bam
samtools index tests/pcs109_5k_prim.bam tests/pcs109_5k_prim.bam.bai
samtools index tests/pcs109_5k.bam tests/pcs109_5k.bam.bai
samtools index tests/pcs109_5k_spliced.bam tests/pcs109_5k_spliced.bam.bai
dh_installdocs
make[1]: Map '/build/seqkit-2.3.1+ds' wordt verlaten
   dh_installchangelogs -O--buildsystem=golang -O--builddirectory=build
   dh_installman -O--buildsystem=golang -O--builddirectory=build
   dh_installsystemduser -O--buildsystem=golang -O--builddirectory=build
   dh_perl -O--buildsystem=golang -O--builddirectory=build
   dh_link -O--buildsystem=golang -O--builddirectory=build
   dh_strip_nondeterminism -O--buildsystem=golang -O--builddirectory=build
   dh_compress -O--buildsystem=golang -O--builddirectory=build
   dh_fixperms -O--buildsystem=golang -O--builddirectory=build
   dh_missing -O--buildsystem=golang -O--builddirectory=build
   dh_strip -a -O--buildsystem=golang -O--builddirectory=build
dh_strip: warning: Could not find the BuildID in debian/seqkit/usr/lib/seqkit/benchmark
   dh_makeshlibs -a -O--buildsystem=golang -O--builddirectory=build
   dh_shlibdeps -a -O--buildsystem=golang -O--builddirectory=build
   dh_installdeb -O--buildsystem=golang -O--builddirectory=build
   dh_golang -O--buildsystem=golang -O--builddirectory=build
   dh_gencontrol -O--buildsystem=golang -O--builddirectory=build
dpkg-gencontrol: warning: Depends field of package seqkit-examples: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: package seqkit: substitution variable ${misc:Static-Built-Using} unused, but is defined
dpkg-gencontrol: warning: package seqkit: substitution variable ${misc:Static-Built-Using} unused, but is defined
   dh_md5sums -O--buildsystem=golang -O--builddirectory=build
   dh_builddeb -O--buildsystem=golang -O--builddirectory=build
dpkg-deb: pakket 'seqkit' wordt gebouwd in '../seqkit_2.3.1+ds-1_arm64.deb'.
dpkg-deb: pakket 'seqkit-dbgsym' wordt gebouwd in '../seqkit-dbgsym_2.3.1+ds-1_arm64.deb'.
dpkg-deb: pakket 'seqkit-examples' wordt gebouwd in '../seqkit-examples_2.3.1+ds-1_all.deb'.
 dpkg-genbuildinfo --build=binary -O../seqkit_2.3.1+ds-1_arm64.buildinfo
 dpkg-genchanges --build=binary -O../seqkit_2.3.1+ds-1_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/12863/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/12863/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/12863 and its subdirectories
I: Current time: Sat Apr 22 23:06:55 +14 2023
I: pbuilder-time-stamp: 1682154415