I: pbuilder: network access will be disabled during build I: Current time: Thu Apr 13 07:48:37 +14 2023 I: pbuilder-time-stamp: 1681321717 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [racon_1.5.0-3.dsc] I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-3.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Sep 30 02:45:21 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-3.dsc: no acceptable signature found dpkg-source: info: extracting racon in racon-1.5.0 dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz dpkg-source: info: unpacking racon_1.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/24270/tmp/hooks/D01_modify_environment starting debug: Running on codethink14-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash lrwxrwxrwx 1 root root 4 Jan 6 03:20 /bin/sh -> dash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/24270/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/24270/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME='pbuilder2' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='nl_BE:nl' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='24270' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Qe9GO1di/pbuilderrc_PwS5 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Qe9GO1di/b2 --logfile b2/build.log --extrapackages usrmerge racon_1.5.0-3.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT-14' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux i-capture-the-hostname 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 11 00:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/24270/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev (>= 1.2.7-3~); however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcurl4{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgtest-dev{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1{a} libsub-override-perl{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 61 newly installed, 0 to remove and 0 not upgraded. Need to get 32.0 MB of archives. After unpacking 128 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 libproc2-0 arm64 2:4.0.2-3 [60.1 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 procps arm64 2:4.0.2-3 [698 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.1+b3 [619 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libarchive13 arm64 3.6.2-1 [316 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-10 [20.8 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libsasl2-2 arm64 2.1.28+dfsg-10 [58.0 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-5 [171 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 libnghttp2-14 arm64 1.52.0-1 [67.9 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 libpsl5 arm64 0.21.2-1 [58.6 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 libssh2-1 arm64 1.10.0-3+b1 [172 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 libcurl4 arm64 7.88.1-7 [361 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 libjsoncpp25 arm64 1.9.5-4 [72.3 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 librhash0 arm64 1.4.3-3 [131 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 libuv1 arm64 1.44.2-1 [133 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 cmake-data all 3.25.1-1 [2026 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 cmake arm64 3.25.1-1 [6806 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 41 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 43 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 googletest all 1.12.1-0.2 [506 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 libbiosoup-dev all 0.10.0-4 [7784 B] Get: 51 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 libbioparser-dev all 3.0.15-3 [9032 B] Get: 53 http://deb.debian.org/debian bookworm/main arm64 rapidjson-dev all 1.1.0+dfsg2-7.1 [97.7 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 libcereal-dev arm64 1.3.2+dfsg-4 [221 kB] Get: 55 http://deb.debian.org/debian bookworm/main arm64 libedlib1 arm64 1.2.7-4+b1 [16.6 kB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 libedlib-dev arm64 1.2.7-4+b1 [21.6 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 libgtest-dev arm64 1.12.1-0.2 [231 kB] Get: 58 http://deb.debian.org/debian bookworm/main arm64 libspoa7.0.0 arm64 4.0.8-1 [48.0 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 libspoa-dev arm64 4.0.8-1 [9344 B] Get: 60 http://deb.debian.org/debian bookworm/main arm64 libthread-pool-dev arm64 4.0.0-1 [7236 B] Get: 61 http://deb.debian.org/debian bookworm/main arm64 rampler arm64 2.1.1-1 [19.9 kB] Fetched 32.0 MB in 1s (45.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.2-3_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.2-3_arm64.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../04-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../10-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../17-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../18-libxml2_2.9.14+dfsg-1.1+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.1+b3) ... Selecting previously unselected package libarchive13:arm64. Preparing to unpack .../19-libarchive13_3.6.2-1_arm64.deb ... Unpacking libarchive13:arm64 (3.6.2-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../20-libbrotli1_1.0.9-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../21-libsasl2-modules-db_2.1.28+dfsg-10_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../22-libsasl2-2_2.1.28+dfsg-10_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../23-libldap-2.5-0_2.5.13+dfsg-5_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../24-libnghttp2-14_1.52.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.52.0-1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../25-libpsl5_0.21.2-1_arm64.deb ... Unpacking libpsl5:arm64 (0.21.2-1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../26-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:arm64. Preparing to unpack .../27-libssh2-1_1.10.0-3+b1_arm64.deb ... Unpacking libssh2-1:arm64 (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:arm64. Preparing to unpack .../28-libcurl4_7.88.1-7_arm64.deb ... Unpacking libcurl4:arm64 (7.88.1-7) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../29-libexpat1_2.5.0-1_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-1) ... Selecting previously unselected package libjsoncpp25:arm64. Preparing to unpack .../30-libjsoncpp25_1.9.5-4_arm64.deb ... Unpacking libjsoncpp25:arm64 (1.9.5-4) ... Selecting previously unselected package librhash0:arm64. Preparing to unpack .../31-librhash0_1.4.3-3_arm64.deb ... Unpacking librhash0:arm64 (1.4.3-3) ... Selecting previously unselected package libuv1:arm64. Preparing to unpack .../32-libuv1_1.44.2-1_arm64.deb ... Unpacking libuv1:arm64 (1.44.2-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../33-cmake-data_3.25.1-1_all.deb ... Unpacking cmake-data (3.25.1-1) ... Selecting previously unselected package cmake. Preparing to unpack .../34-cmake_3.25.1-1_arm64.deb ... Unpacking cmake (3.25.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../35-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../36-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../37-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../38-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../39-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../40-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../41-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../42-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../43-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../44-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. 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I: Building the package I: user script /srv/workspace/pbuilder/24270/tmp/hooks/A99_set_merged_usr starting Re-configuring usrmerge... I: user script /srv/workspace/pbuilder/24270/tmp/hooks/A99_set_merged_usr finished hostname: Temporary failure in name resolution I: Running cd /build/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake 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90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz make[3]: Leaving directory '/build/racon-1.5.0/obj-aarch64-linux-gnu' [ 90%] Built target racon_exe [100%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_test.dir/test/racon_test.cpp.o -o bin/racon_test lib/libracon.a -ledlib -lspoa -pthread -lz /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a make[3]: Leaving directory '/build/racon-1.5.0/obj-aarch64-linux-gnu' [100%] Built target racon_test make[2]: Leaving directory '/build/racon-1.5.0/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/racon-1.5.0/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/racon-1.5.0/obj-aarch64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/racon-1.5.0' cd test && ../obj-*/bin/racon_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (5 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (7 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (8 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (14 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (5 ms) [----------] 5 tests from RaconInitializeTest (42 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.001085 s [racon::Polisher::initialize] loaded sequences 0.115137 s [racon::Polisher::initialize] loaded overlaps 0.000672 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.214776 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.286753 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.354747 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.410742 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.474753 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.534737 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.682743 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.754754 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.814766 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.862750 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.938738 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.002763 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.058753 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.098754 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.146747 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.166766 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.194753 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.230742 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.248085 s [racon::Polisher::initialize] aligning overlaps [====================] 1.289264 s [racon::Polisher::initialize] transformed data into windows 0.004620 s [racon::Polisher::polish] generating consensus [=> ] 0.308668 s [racon::Polisher::polish] generating consensus [==> ] 0.436653 s [racon::Polisher::polish] generating consensus [===> ] 0.740672 s [racon::Polisher::polish] generating consensus [====> ] 0.884713 s [racon::Polisher::polish] generating consensus [=====> ] 0.968660 s [racon::Polisher::polish] generating consensus [======> ] 1.100664 s [racon::Polisher::polish] generating consensus [=======> ] 1.204658 s [racon::Polisher::polish] generating consensus [========> ] 1.348714 s [racon::Polisher::polish] generating consensus [=========> ] 1.487102 s [racon::Polisher::polish] generating consensus [==========> ] 1.644696 s [racon::Polisher::polish] generating consensus [===========> ] 1.876725 s [racon::Polisher::polish] generating consensus [============> ] 2.124686 s [racon::Polisher::polish] generating consensus [=============> ] 2.544674 s [racon::Polisher::polish] generating consensus [==============> ] 2.940682 s [racon::Polisher::polish] generating consensus [===============> ] 3.160681 s [racon::Polisher::polish] generating consensus [================> ] 3.340765 s [racon::Polisher::polish] generating consensus [=================> ] 3.668705 s [racon::Polisher::polish] generating consensus [==================> ] 3.804689 s [racon::Polisher::polish] generating consensus [===================>] 3.956676 s [racon::Polisher::polish] generating consensus [====================] 4.636764 s [racon::Polisher::] total = 6.097742 s [ OK ] RaconPolishingTest.ConsensusWithQualities (6119 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.000979 s [racon::Polisher::initialize] loaded sequences 0.090849 s [racon::Polisher::initialize] loaded overlaps 0.000605 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.084755 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.136749 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.205753 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.254711 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.320746 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.376254 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.504747 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.556748 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.600746 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.636749 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.688762 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.748756 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.808722 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.876746 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.944690 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.032758 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.064763 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.119353 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.156742 s [racon::Polisher::initialize] aligning overlaps [====================] 1.195444 s [racon::Polisher::initialize] transformed data into windows 0.001032 s [racon::Polisher::polish] generating consensus [=> ] 0.320084 s [racon::Polisher::polish] generating consensus [==> ] 0.548072 s [racon::Polisher::polish] generating consensus [===> ] 0.824022 s [racon::Polisher::polish] generating consensus [====> ] 0.956033 s [racon::Polisher::polish] generating consensus [=====> ] 1.072068 s [racon::Polisher::polish] generating consensus [======> ] 1.196064 s [racon::Polisher::polish] generating consensus [=======> ] 1.336055 s [racon::Polisher::polish] generating consensus [========> ] 1.456090 s [racon::Polisher::polish] generating consensus [=========> ] 1.596040 s [racon::Polisher::polish] generating consensus [==========> ] 1.872056 s [racon::Polisher::polish] generating consensus [===========> ] 2.192029 s [racon::Polisher::polish] generating consensus [============> ] 2.588030 s [racon::Polisher::polish] generating consensus [=============> ] 3.172044 s [racon::Polisher::polish] generating consensus [==============> ] 3.568062 s [racon::Polisher::polish] generating consensus [===============> ] 4.044039 s [racon::Polisher::polish] generating consensus [================> ] 4.356044 s [racon::Polisher::polish] generating consensus [=================> ] 4.688056 s [racon::Polisher::polish] generating consensus [==================> ] 4.900047 s [racon::Polisher::polish] generating consensus [===================>] 5.100054 s [racon::Polisher::polish] generating consensus [====================] 6.662181 s [racon::Polisher::] total = 7.972895 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (7990 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.000970 s [racon::Polisher::initialize] loaded sequences 0.180199 s [racon::Polisher::initialize] loaded overlaps 0.070640 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.027123 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.027174 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.027194 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.027213 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.027232 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.027248 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.027265 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.027281 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.027297 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.027314 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.027329 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.027345 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.027361 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.027378 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.027395 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.027413 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.027432 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.027449 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.027466 s [racon::Polisher::initialize] aligning overlaps [====================] 0.027483 s [racon::Polisher::initialize] transformed data into windows 0.004785 s [racon::Polisher::polish] generating consensus [=> ] 0.349008 s [racon::Polisher::polish] generating consensus [==> ] 0.542684 s [racon::Polisher::polish] generating consensus [===> ] 0.726660 s [racon::Polisher::polish] generating consensus [====> ] 0.866711 s [racon::Polisher::polish] generating consensus [=====> ] 0.938667 s [racon::Polisher::polish] generating consensus [======> ] 1.022640 s [racon::Polisher::polish] generating consensus [=======> ] 1.122666 s [racon::Polisher::polish] generating consensus [========> ] 1.250713 s [racon::Polisher::polish] generating consensus [=========> ] 1.358661 s [racon::Polisher::polish] generating consensus [==========> ] 1.550660 s [racon::Polisher::polish] generating consensus [===========> ] 1.810651 s [racon::Polisher::polish] generating consensus [============> ] 2.054667 s [racon::Polisher::polish] generating consensus [=============> ] 2.474668 s [racon::Polisher::polish] generating consensus [==============> ] 2.842668 s [racon::Polisher::polish] generating consensus [===============> ] 3.150674 s [racon::Polisher::polish] generating consensus [================> ] 3.382766 s [racon::Polisher::polish] generating consensus [=================> ] 3.706680 s [racon::Polisher::polish] generating consensus [==================> ] 3.878671 s [racon::Polisher::polish] generating consensus [===================>] 4.026667 s [racon::Polisher::polish] generating consensus [====================] 4.759650 s [racon::Polisher::] total = 5.094695 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (5100 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.000945 s [racon::Polisher::initialize] loaded sequences 0.090723 s [racon::Polisher::initialize] loaded overlaps 0.085428 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.020536 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.020671 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.020914 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.022726 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.022759 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.022776 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.022791 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.022808 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.022824 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.022841 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.022858 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.022874 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.022890 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.022906 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.022923 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.022941 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.022958 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.022975 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.022993 s [racon::Polisher::initialize] aligning overlaps [====================] 0.023010 s [racon::Polisher::initialize] transformed data into windows 0.000966 s [racon::Polisher::polish] generating consensus [=> ] 0.248176 s [racon::Polisher::polish] generating consensus [==> ] 0.708172 s [racon::Polisher::polish] generating consensus [===> ] 0.936130 s [racon::Polisher::polish] generating consensus [====> ] 1.112180 s [racon::Polisher::polish] generating consensus [=====> ] 1.232135 s [racon::Polisher::polish] generating consensus [======> ] 1.376138 s [racon::Polisher::polish] generating consensus [=======> ] 1.496141 s [racon::Polisher::polish] generating consensus [========> ] 1.636202 s [racon::Polisher::polish] generating consensus [=========> ] 1.776142 s [racon::Polisher::polish] generating consensus [==========> ] 1.987337 s [racon::Polisher::polish] generating consensus [===========> ] 2.268132 s [racon::Polisher::polish] generating consensus [============> ] 2.620135 s [racon::Polisher::polish] generating consensus [=============> ] 3.056132 s [racon::Polisher::polish] generating consensus [==============> ] 3.524131 s [racon::Polisher::polish] generating consensus [===============> ] 3.964136 s [racon::Polisher::polish] generating consensus [================> ] 4.340208 s [racon::Polisher::polish] generating consensus [=================> ] 4.716145 s [racon::Polisher::polish] generating consensus [==================> ] 4.936165 s [racon::Polisher::polish] generating consensus [===================>] 5.152128 s [racon::Polisher::polish] generating consensus [====================] 6.164231 s [racon::Polisher::] total = 6.384080 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (6390 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.000946 s [racon::Polisher::initialize] loaded sequences 0.113293 s [racon::Polisher::initialize] loaded overlaps 0.005046 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.075329 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.131325 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.203333 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.275327 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.327333 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.327380 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.379312 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.447335 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.467331 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.523341 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.554208 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.655328 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.679338 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.727331 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.791336 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.883330 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.959333 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.031331 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.067352 s [racon::Polisher::initialize] aligning overlaps [====================] 1.070170 s [racon::Polisher::initialize] transformed data into windows 0.008330 s [racon::Polisher::polish] generating consensus [=> ] 0.840628 s [racon::Polisher::polish] generating consensus [==> ] 0.840701 s [racon::Polisher::polish] generating consensus [===> ] 1.476584 s [racon::Polisher::polish] generating consensus [====> ] 1.476668 s [racon::Polisher::polish] generating consensus [=====> ] 1.720584 s [racon::Polisher::polish] generating consensus [======> ] 1.720648 s [racon::Polisher::polish] generating consensus [=======> ] 2.092585 s [racon::Polisher::polish] generating consensus [========> ] 2.092668 s [racon::Polisher::polish] generating consensus [=========> ] 2.432582 s [racon::Polisher::polish] generating consensus [==========> ] 2.432644 s [racon::Polisher::polish] generating consensus [===========> ] 3.264588 s [racon::Polisher::polish] generating consensus [============> ] 3.390506 s [racon::Polisher::polish] generating consensus [=============> ] 4.636567 s [racon::Polisher::polish] generating consensus [==============> ] 4.776582 s [racon::Polisher::polish] generating consensus [===============> ] 5.732610 s [racon::Polisher::polish] generating consensus [================> ] 5.732696 s [racon::Polisher::polish] generating consensus [=================> ] 6.600597 s [racon::Polisher::polish] generating consensus [==================> ] 6.600651 s [racon::Polisher::polish] generating consensus [===================>] 7.200591 s [racon::Polisher::polish] generating consensus [====================] 8.449739 s [racon::Polisher::] total = 9.675631 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (9687 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.000954 s [racon::Polisher::initialize] loaded sequences 0.104380 s [racon::Polisher::initialize] loaded overlaps 0.000603 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.081037 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.137022 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.185031 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.247944 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.305032 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.325033 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.401037 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.529055 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.553032 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.613042 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.665036 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.765026 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.785041 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.833019 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.876792 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.937043 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.001033 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.061034 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.061078 s [racon::Polisher::initialize] aligning overlaps [====================] 1.109026 s [racon::Polisher::initialize] transformed data into windows 0.005059 s [racon::Polisher::polish] generating consensus [=> ] 0.230757 s [racon::Polisher::polish] generating consensus [==> ] 0.410737 s [racon::Polisher::polish] generating consensus [===> ] 0.566709 s [racon::Polisher::polish] generating consensus [====> ] 0.686756 s [racon::Polisher::polish] generating consensus [=====> ] 0.802741 s [racon::Polisher::polish] generating consensus [======> ] 0.906721 s [racon::Polisher::polish] generating consensus [=======> ] 1.002723 s [racon::Polisher::polish] generating consensus [========> ] 1.098761 s [racon::Polisher::polish] generating consensus [=========> ] 1.230742 s [racon::Polisher::polish] generating consensus [==========> ] 1.418704 s [racon::Polisher::polish] generating consensus [===========> ] 1.674718 s [racon::Polisher::polish] generating consensus [============> ] 1.910720 s [racon::Polisher::polish] generating consensus [=============> ] 2.318721 s [racon::Polisher::polish] generating consensus [==============> ] 2.726706 s [racon::Polisher::polish] generating consensus [===============> ] 2.998717 s [racon::Polisher::polish] generating consensus [================> ] 3.198712 s [racon::Polisher::polish] generating consensus [=================> ] 3.506719 s [racon::Polisher::polish] generating consensus [==================> ] 3.714710 s [racon::Polisher::polish] generating consensus [===================>] 3.878721 s [racon::Polisher::polish] generating consensus [====================] 4.598686 s [racon::Polisher::] total = 5.847972 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (5858 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.088562 s [racon::Polisher::initialize] loaded sequences 0.085173 s [racon::Polisher::initialize] loaded overlaps 0.026361 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.148134 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.208118 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.248116 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.284104 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.328104 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.392118 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.426978 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.466909 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.524123 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.616113 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.700108 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.748120 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.816105 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.912106 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.980103 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.052123 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.104096 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.208115 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.244104 s [racon::Polisher::initialize] aligning overlaps [====================] 1.276115 s [racon::Polisher::initialize] transformed data into windows 0.017805 s [racon::Polisher::polish] generating consensus [=> ] 0.210059 s [racon::Polisher::polish] generating consensus [==> ] 0.390279 s [racon::Polisher::polish] generating consensus [===> ] 0.589991 s [racon::Polisher::polish] generating consensus [====> ] 0.602316 s [racon::Polisher::polish] generating consensus [=====> ] 0.710173 s [racon::Polisher::polish] generating consensus [======> ] 0.806309 s [racon::Polisher::polish] generating consensus [=======> ] 0.938307 s [racon::Polisher::polish] generating consensus [========> ] 0.938780 s [racon::Polisher::polish] generating consensus [=========> ] 1.186427 s [racon::Polisher::polish] generating consensus [==========> ] 1.281930 s [racon::Polisher::polish] generating consensus [===========> ] 1.366101 s [racon::Polisher::polish] generating consensus [============> ] 1.402161 s [racon::Polisher::polish] generating consensus [=============> ] 1.530277 s [racon::Polisher::polish] generating consensus [==============> ] 1.531036 s [racon::Polisher::polish] generating consensus [===============> ] 1.774166 s [racon::Polisher::polish] generating consensus [================> ] 1.774537 s [racon::Polisher::polish] generating consensus [=================> ] 2.154016 s [racon::Polisher::polish] generating consensus [==================> ] 2.266148 s [racon::Polisher::polish] generating consensus [===================>] 2.330264 s [racon::Polisher::polish] generating consensus [====================] 2.345065 s [racon::Polisher::] total = 3.840458 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (3845 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.104605 s [racon::Polisher::initialize] loaded sequences 0.064341 s [racon::Polisher::initialize] loaded overlaps 0.022105 s [racon::Polisher::initialize] aligning overlaps [=> ] 1.599220 s [racon::Polisher::initialize] aligning overlaps [==> ] 2.591225 s [racon::Polisher::initialize] aligning overlaps [===> ] 3.607248 s [racon::Polisher::initialize] aligning overlaps [====> ] 4.935229 s [racon::Polisher::initialize] aligning overlaps [=====> ] 5.803253 s [racon::Polisher::initialize] aligning overlaps [======> ] 6.619221 s [racon::Polisher::initialize] aligning overlaps [=======> ] 7.619214 s [racon::Polisher::initialize] aligning overlaps [========> ] 8.947213 s [racon::Polisher::initialize] aligning overlaps [=========> ] 10.419218 s [racon::Polisher::initialize] aligning overlaps [==========> ] 11.635225 s [racon::Polisher::initialize] aligning overlaps [===========> ] 12.719231 s [racon::Polisher::initialize] aligning overlaps [============> ] 14.187221 s [racon::Polisher::initialize] aligning overlaps [=============> ] 15.667229 s [racon::Polisher::initialize] aligning overlaps [==============> ] 16.847214 s [racon::Polisher::initialize] aligning overlaps [===============> ] 18.131229 s [racon::Polisher::initialize] aligning overlaps [================> ] 19.407232 s [racon::Polisher::initialize] aligning overlaps [=================> ] 20.451235 s [racon::Polisher::initialize] aligning overlaps [==================> ] 22.011227 s [racon::Polisher::initialize] aligning overlaps [===================>] 23.127227 s [racon::Polisher::initialize] aligning overlaps [====================] 24.299236 s [racon::Polisher::initialize] transformed data into windows 0.363710 s [racon::Polisher::polish] generating consensus [=> ] 8.788453 s [racon::Polisher::polish] generating consensus [==> ] 14.736453 s [racon::Polisher::polish] generating consensus [===> ] 20.880523 s [racon::Polisher::polish] generating consensus [====> ] 26.272535 s [racon::Polisher::polish] generating consensus [=====> ] 32.576445 s [racon::Polisher::polish] generating consensus [======> ] 39.188445 s [racon::Polisher::polish] generating consensus [=======> ] 46.328439 s [racon::Polisher::polish] generating consensus [========> ] 51.316455 s [racon::Polisher::polish] generating consensus [=========> ] 57.764424 s [racon::Polisher::polish] generating consensus [==========> ] 65.044451 s [racon::Polisher::polish] generating consensus [===========> ] 71.740561 s [racon::Polisher::polish] generating consensus [============> ] 78.648431 s [racon::Polisher::polish] generating consensus [=============> ] 85.096452 s [racon::Polisher::polish] generating consensus [==============> ] 91.628472 s [racon::Polisher::polish] generating consensus [===============> ] 98.540435 s [racon::Polisher::polish] generating consensus [================> ] 102.456529 s [racon::Polisher::polish] generating consensus [=================> ] 110.172453 s [racon::Polisher::polish] generating consensus [==================> ] 117.388524 s [racon::Polisher::polish] generating consensus [===================>] 124.148458 s [racon::Polisher::polish] generating consensus [====================] 130.587708 s [racon::Polisher::] total = 155.453157 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (155459 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.090430 s [racon::Polisher::initialize] loaded sequences 0.110736 s [racon::Polisher::initialize] loaded overlaps 0.062199 s [racon::Polisher::initialize] aligning overlaps [=> ] 1.595398 s [racon::Polisher::initialize] aligning overlaps [==> ] 2.535396 s [racon::Polisher::initialize] aligning overlaps [===> ] 3.443380 s [racon::Polisher::initialize] aligning overlaps [====> ] 4.795409 s [racon::Polisher::initialize] aligning overlaps [=====> ] 6.035394 s [racon::Polisher::initialize] aligning overlaps [======> ] 6.823381 s [racon::Polisher::initialize] aligning overlaps [=======> ] 7.835385 s [racon::Polisher::initialize] aligning overlaps [========> ] 9.099397 s [racon::Polisher::initialize] aligning overlaps [=========> ] 10.695258 s [racon::Polisher::initialize] aligning overlaps [==========> ] 11.827407 s [racon::Polisher::initialize] aligning overlaps [===========> ] 12.819390 s [racon::Polisher::initialize] aligning overlaps [============> ] 14.107393 s [racon::Polisher::initialize] aligning overlaps [=============> ] 15.667401 s [racon::Polisher::initialize] aligning overlaps [==============> ] 16.971399 s [racon::Polisher::initialize] aligning overlaps [===============> ] 18.223387 s [racon::Polisher::initialize] aligning overlaps [================> ] 19.535411 s [racon::Polisher::initialize] aligning overlaps [=================> ] 20.643381 s [racon::Polisher::initialize] aligning overlaps [==================> ] 21.903418 s [racon::Polisher::initialize] aligning overlaps [===================>] 23.243384 s [racon::Polisher::initialize] aligning overlaps [====================] 24.319399 s [racon::Polisher::initialize] transformed data into windows 0.073003 s [racon::Polisher::polish] generating consensus [=> ] 10.687405 s [racon::Polisher::polish] generating consensus [==> ] 18.383412 s [racon::Polisher::polish] generating consensus [===> ] 26.959484 s [racon::Polisher::polish] generating consensus [====> ] 33.531517 s [racon::Polisher::polish] generating consensus [=====> ] 41.451424 s [racon::Polisher::polish] generating consensus [======> ] 50.247427 s [racon::Polisher::polish] generating consensus [=======> ] 58.567425 s [racon::Polisher::polish] generating consensus [========> ] 64.379394 s [racon::Polisher::polish] generating consensus [=========> ] 71.303403 s [racon::Polisher::polish] generating consensus [==========> ] 80.391374 s [racon::Polisher::polish] generating consensus [===========> ] 88.035532 s [racon::Polisher::polish] generating consensus [============> ] 95.403511 s [racon::Polisher::polish] generating consensus [=============> ] 102.547394 s [racon::Polisher::polish] generating consensus [==============> ] 109.855413 s [racon::Polisher::polish] generating consensus [===============> ] 117.315417 s [racon::Polisher::polish] generating consensus [================> ] 121.231521 s [racon::Polisher::polish] generating consensus [=================> ] 130.779401 s [racon::Polisher::polish] generating consensus [==================> ] 139.619505 s [racon::Polisher::polish] generating consensus [===================>] 147.535443 s [racon::Polisher::polish] generating consensus [====================] 153.515565 s [racon::Polisher::] total = 178.179830 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (178185 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.108649 s [racon::Polisher::initialize] loaded sequences 0.092961 s [racon::Polisher::initialize] loaded overlaps 0.023573 s [racon::Polisher::initialize] aligning overlaps [=> ] 1.276213 s [racon::Polisher::initialize] aligning overlaps [==> ] 2.130429 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.956172 s [racon::Polisher::initialize] aligning overlaps [====> ] 4.020191 s [racon::Polisher::initialize] aligning overlaps [=====> ] 4.784185 s [racon::Polisher::initialize] aligning overlaps [======> ] 5.500188 s [racon::Polisher::initialize] aligning overlaps [=======> ] 6.220180 s [racon::Polisher::initialize] aligning overlaps [========> ] 7.268184 s [racon::Polisher::initialize] aligning overlaps [=========> ] 8.504194 s [racon::Polisher::initialize] aligning overlaps [==========> ] 9.400172 s [racon::Polisher::initialize] aligning overlaps [===========> ] 10.184182 s [racon::Polisher::initialize] aligning overlaps [============> ] 11.316174 s [racon::Polisher::initialize] aligning overlaps [=============> ] 12.488165 s [racon::Polisher::initialize] aligning overlaps [==============> ] 13.556186 s [racon::Polisher::initialize] aligning overlaps [===============> ] 14.756179 s [racon::Polisher::initialize] aligning overlaps [================> ] 15.880192 s [racon::Polisher::initialize] aligning overlaps [=================> ] 17.088180 s [racon::Polisher::initialize] aligning overlaps [==================> ] 18.328193 s [racon::Polisher::initialize] aligning overlaps [===================>] 19.076176 s [racon::Polisher::initialize] aligning overlaps [====================] 19.805803 s [racon::Polisher::initialize] transformed data into windows 0.203347 s [racon::Polisher::polish] generating consensus [=> ] 6.824573 s [racon::Polisher::polish] generating consensus [==> ] 11.812577 s [racon::Polisher::polish] generating consensus [===> ] 17.040677 s [racon::Polisher::polish] generating consensus [====> ] 21.064693 s [racon::Polisher::polish] generating consensus [=====> ] 25.600591 s [racon::Polisher::polish] generating consensus [======> ] 31.048568 s [racon::Polisher::polish] generating consensus [=======> ] 35.984596 s [racon::Polisher::polish] generating consensus [========> ] 39.892594 s [racon::Polisher::polish] generating consensus [=========> ] 44.976570 s [racon::Polisher::polish] generating consensus [==========> ] 51.028570 s [racon::Polisher::polish] generating consensus [===========> ] 56.052714 s [racon::Polisher::polish] generating consensus [============> ] 61.812586 s [racon::Polisher::polish] generating consensus [=============> ] 66.876585 s [racon::Polisher::polish] generating consensus [==============> ] 72.088586 s [racon::Polisher::polish] generating consensus [===============> ] 77.444588 s [racon::Polisher::polish] generating consensus [================> ] 81.240689 s [racon::Polisher::polish] generating consensus [=================> ] 88.164555 s [racon::Polisher::polish] generating consensus [==================> ] 94.868689 s [racon::Polisher::polish] generating consensus [===================>] 101.564600 s [racon::Polisher::polish] generating consensus [====================] 106.489440 s [racon::Polisher::] total = 126.731996 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (126739 ms) [----------] 10 tests from RaconPolishingTest (505378 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (505420 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/build/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/racon-1.5.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/racon-1.5.0 -B/build/racon-1.5.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/racon-1.5.0/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/racon-1.5.0/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/racon-1.5.0/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/racon-1.5.0/obj-aarch64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_arm64.deb'. dpkg-deb: building package 'racon' in '../racon_1.5.0-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_arm64.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/24270/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/24270/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/24270 and its subdirectories I: Current time: Thu Apr 13 07:59:09 +14 2023 I: pbuilder-time-stamp: 1681322349