I: pbuilder: network access will be disabled during build I: Current time: Tue Jul 2 03:45:06 -12 2024 I: pbuilder-time-stamp: 1719935106 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] tar: ./dev/shm: time stamp 2025-08-04 08:53:42 is 34405715.468874 s in the future tar: ./etc/resolv.conf: time stamp 2025-08-04 08:53:42 is 34405715.46815192 s in the future tar: ./etc/mailname: time stamp 2025-08-04 08:53:42 is 34405715.46805516 s in the future tar: ./etc/hostname: time stamp 2025-08-04 08:53:42 is 34405715.46797116 s in the future tar: ./etc/hosts: time stamp 2025-08-04 08:53:42 is 34405715.46789902 s in the future tar: ./tmp: time stamp 2025-08-04 08:53:52 is 34405725.45344846 s in the future tar: ./usr/share/perl5/Debian: time stamp 2025-08-04 08:27:37 is 34404148.10942958 s in the future tar: ./usr/share/man/pt/man8: time stamp 2025-08-04 08:27:37 is 34404148.0364335 s in the future tar: ./usr/share/man/pt/man5: time stamp 2025-08-04 08:27:37 is 34404148.03083208 s in the future tar: ./usr/share/man/nl/man8: time stamp 2025-08-04 08:27:37 is 34404148.0189381 s in the future tar: ./usr/share/man/nl/man5: time stamp 2025-08-04 08:27:37 is 34404148.01458502 s in the future tar: ./usr/share/man/man5: time stamp 2025-08-04 08:27:37 is 34404147.98036078 s in the future tar: ./usr/share/man/fr/man5: time stamp 2025-08-04 08:27:37 is 34404147.91704594 s in the future tar: ./usr/share/man/de/man5: time stamp 2025-08-04 08:27:37 is 34404147.90122066 s in the future tar: ./usr/share/locale/zh_CN/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.68643442 s in the future tar: ./usr/share/locale/vi/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.65725608 s in the future tar: ./usr/share/locale/uk/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.60573954 s in the future tar: ./usr/share/locale/sv/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.52753864 s in the future tar: ./usr/share/locale/sk/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.50387992 s in the future tar: ./usr/share/locale/ru/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.4555029 s in the future tar: ./usr/share/locale/pt_BR/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.4080967 s in the future tar: ./usr/share/locale/pt/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.3762999 s in the future tar: ./usr/share/locale/pl/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.35320072 s in the future tar: ./usr/share/locale/nl/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.3236268 s in the future tar: ./usr/share/locale/nb/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.30182254 s in the future tar: ./usr/share/locale/ko/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.2743776 s in the future tar: ./usr/share/locale/ja/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.24200688 s in the future tar: ./usr/share/locale/it/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.21893974 s in the future tar: ./usr/share/locale/hu/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.20347158 s in the future tar: ./usr/share/locale/gl/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.19403918 s in the future tar: ./usr/share/locale/fr/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.13979852 s in the future tar: ./usr/share/locale/eu/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.10497284 s in the future tar: ./usr/share/locale/es/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.06475794 s in the future tar: ./usr/share/locale/de/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404147.0214144 s in the future tar: ./usr/share/locale/da/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404146.99611026 s in the future tar: ./usr/share/locale/cs/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404146.97063242 s in the future tar: ./usr/share/locale/ca/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34404146.94607766 s in the future tar: ./usr/share/doc/adduser/examples/adduser.local.conf.examples/skel.other: time stamp 2025-08-04 08:27:37 is 34404146.8685564 s in the future tar: ./usr/share/doc/adduser/examples/adduser.local.conf.examples/skel: time stamp 2025-08-04 08:27:37 is 34404146.86827716 s in the future tar: ./usr/share/doc/adduser/examples/adduser.local.conf.examples: time stamp 2025-08-04 08:27:37 is 34404146.86813338 s in the future tar: ./usr/share/doc/adduser/examples: time stamp 2025-08-04 08:27:37 is 34404146.86674968 s in the future tar: ./usr/share/doc/adduser: time stamp 2025-08-04 08:27:37 is 34404146.86642258 s in the future tar: ./var/log/dpkg.log: time stamp 2025-08-04 08:27:37 is 34404139.18030982 s in the future tar: ./var/log/apt/history.log: time stamp 2025-08-04 08:27:37 is 34404139.1800937 s in the future tar: ./var/log/apt/term.log: time stamp 2025-08-04 08:27:37 is 34404139.17991172 s in the future tar: ./var/log/apt/eipp.log.xz: time stamp 2025-08-04 08:27:36 is 34404138.17977334 s in the future tar: ./var/log/apt: time stamp 2025-08-04 08:27:36 is 34404138.17973308 s in the future tar: ./var/cache/apt/archives/partial: time stamp 2025-08-04 08:27:36 is 34404138.15820058 s in the future tar: ./var/cache/apt/archives: time stamp 2025-08-04 08:27:39 is 34404141.15810882 s in the future tar: ./var/cache/apt: time stamp 2025-08-04 08:53:51 is 34405713.15808312 s in the future tar: ./var/lib/dpkg/triggers/Lock: time stamp 2025-08-04 08:27:37 is 34404139.15540858 s in the future tar: ./var/lib/dpkg/lock: time stamp 2025-08-04 08:27:37 is 34404139.15527656 s in the future tar: ./var/lib/dpkg/updates: time stamp 2025-08-04 08:27:37 is 34404139.15301014 s in the future tar: ./var/lib/dpkg/info/adduser.list: time stamp 2025-08-04 08:27:37 is 34404139.04815446 s in the future tar: ./var/lib/dpkg/info: time stamp 2025-08-04 08:27:37 is 34404139.04779328 s in the future tar: ./var/lib/dpkg/status-old: time stamp 2025-08-04 08:27:37 is 34404139.04420294 s in the future tar: ./var/lib/dpkg/status: time stamp 2025-08-04 08:27:37 is 34404139.04197894 s in the future tar: ./var/lib/dpkg: time stamp 2025-08-04 08:27:37 is 34404139.0418919 s in the future tar: ./var/lib/apt/lists/partial: time stamp 2025-08-04 08:53:43 is 34405705.04153332 s in the future tar: ./var/lib/apt/lists: time stamp 2025-08-04 08:27:33 is 34404134.3686719 s in the future tar: ./var/lib/apt/extended_states: time stamp 2025-08-04 08:27:36 is 34404137.36851942 s in the future tar: ./var/lib/apt: time stamp 2025-08-04 08:27:36 is 34404137.368398 s in the future tar: ./run/shm: time stamp 2025-08-04 08:53:42 is 34405703.20907254 s in the future tar: ./usr/share/man/de/man8: time stamp 2025-08-04 08:27:37 is 34404138.1918428 s in the future tar: ./usr/share/man/fr/man8: time stamp 2025-08-04 08:27:37 is 34404138.19167104 s in the future tar: ./usr/share/man/man8: time stamp 2025-08-04 08:27:37 is 34404138.19150052 s in the future tar: ./usr/sbin: time stamp 2025-08-04 08:27:37 is 34404138.19083798 s in the future tar: ./run: time stamp 2025-08-04 08:53:42 is 34405703.1907799 s in the future tar: ./etc: time stamp 2025-08-04 08:53:42 is 34405703.1906389 s in the future tar: ./dev: time stamp 2025-08-04 08:53:42 is 34405703.19061072 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-alignio-stockholm-perl_1.7.3-2.dsc] I: copying [./libbio-alignio-stockholm-perl_1.7.3.orig.tar.gz] I: copying [./libbio-alignio-stockholm-perl_1.7.3-2.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Mar 2 20:03:26 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-alignio-stockholm-perl_1.7.3-2.dsc: no acceptable signature found dpkg-source: info: extracting libbio-alignio-stockholm-perl in libbio-alignio-stockholm-perl-1.7.3 dpkg-source: info: unpacking libbio-alignio-stockholm-perl_1.7.3.orig.tar.gz dpkg-source: info: unpacking libbio-alignio-stockholm-perl_1.7.3-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/32231/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 ' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='32231' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Kx0BDb8z/pbuilderrc_NXNL --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Kx0BDb8z/b1 --logfile b1/build.log libbio-alignio-stockholm-perl_1.7.3-2.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink15-arm64 4.15.0-211-generic #222-Ubuntu SMP Tue Apr 18 18:58:27 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 23 04:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/32231/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), libbio-perl-perl, libtest-most-perl, perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19611 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-most-perl; however: Package libtest-most-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1{a} libexception-class-perl{a} libfile-stripnondeterminism-perl{a} libicu72{a} libio-string-perl{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk wget 0 packages upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 21.7 MB of archives. After unpacking 84.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 libdata-stag-perl all 0.14-3 [448 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get: 37 http://deb.debian.org/debian bookworm/main arm64 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 libtest-deep-perl all 1.204-1 [52.9 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 libtest-differences-perl all 0.69-1 [18.9 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 libtest-most-perl all 0.38-1 [25.1 kB] Fetched 21.7 MB in 1s (20.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19611 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../02-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/libbio-alignio-stockholm-perl-1.7.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-alignio-stockholm-perl_1.7.3-2_source.changes dpkg-buildpackage: info: source package libbio-alignio-stockholm-perl dpkg-buildpackage: info: source version 1.7.3-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/build/libbio-alignio-stockholm-perl-1.7.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/build/libbio-alignio-stockholm-perl-1.7.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::AlignIO::stockholm Writing MYMETA.yml and MYMETA.json dh_auto_build make -j8 make[1]: Entering directory '/build/libbio-alignio-stockholm-perl-1.7.3' cp lib/Bio/Index/Stockholm.pm blib/lib/Bio/Index/Stockholm.pm cp lib/Bio/AlignIO/stockholm.pm blib/lib/Bio/AlignIO/stockholm.pm Manifying 2 pod documents make[1]: Leaving directory '/build/libbio-alignio-stockholm-perl-1.7.3' dh_auto_test make -j8 test TEST_VERBOSE=1 make[1]: Entering directory '/build/libbio-alignio-stockholm-perl-1.7.3' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ........... 1..2 ok 1 - Bio/AlignIO/stockholm.pm loaded ok ok 2 - Bio/Index/Stockholm.pm loaded ok ok t/AlignIO.t .............. 1..87 ok 1 - use Bio::AlignIO::stockholm; ok 2 - An object of class 'Bio::AlignIO::stockholm' isa 'Bio::AlignIO' ok 3 - An object of class 'Bio::SimpleAlign' isa 'Bio::Align::AlignI' ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 - An object of class 'Bio::Annotation::Comment' isa 'Bio::Annotation::Comment' ok 10 - Stockholm annotation ok 11 - Stockholm annotation ok 12 - stockholm output test ok 13 - An object of class 'Bio::SimpleAlign' isa 'Bio::Align::AlignI' ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 - 'Stockholm annotation' isa 'Bio::Annotation::Reference' ok 21 - Stockholm annotation ok 22 - Stockholm annotation ok 23 - Stockholm annotation ok 24 - Stockholm annotation ok 25 - An object of class 'Bio::Seq::Meta' isa 'Bio::Seq::MetaI' ok 26 - Rfam meta data ok 27 - Rfam meta data ok 28 ok 29 - An object of class 'Bio::SimpleAlign' isa 'Bio::Align::AlignI' ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 - An object of class 'Bio::Seq::Meta' isa 'Bio::Seq::MetaI' ok 36 - Rfam meta data ok 37 - Rfam meta data ok 38 - An object of class 'Bio::AlignIO::stockholm' isa 'Bio::AlignIO' ok 39 ok 40 - An object of class 'Bio::SimpleAlign' isa 'Bio::Align::AlignI' ok 41 ok 42 ok 43 ok 44 ok 45 - An object of class 'Bio::Annotation::SimpleValue' isa 'Bio::Annotation::SimpleValue' ok 46 - Pfam annotation ok 47 ok 48 - An object of class 'Bio::SimpleAlign' isa 'Bio::Align::AlignI' ok 49 ok 50 ok 51 ok 52 ok 53 - An object of class 'Bio::SimpleAlign' isa 'Bio::Align::AlignI' ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 - An object of class 'Bio::Seq::Meta' isa 'Bio::Seq::MetaI' ok 60 - Pfam aln meta data ok 61 - Pfam aln meta data ok 62 - Pfam aln meta data ok 63 - Pfam aln meta data ok 64 - Pfam aln meta data ok 65 - Pfam aln meta data ok 66 - Pfam seq meta data ok 67 - Pfam seq meta data ok 68 - Pfam seq meta data ok 69 - Pfam seq meta data ok 70 ok 71 - An object of class 'Bio::SeqFeature::Generic' isa 'Bio::SeqFeatureI' ok 72 - An object of class 'Bio::Seq::Meta' isa 'Bio::Seq::Meta' ok 73 - An object of class 'Bio::Annotation::Target' isa 'Bio::AnnotationI' ok 74 - An object of class 'Bio::Annotation::Target' isa 'Bio::Annotation::DBLink' ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok t/author-eol.t ........... skipped: these tests are for testing by the author t/author-mojibake.t ...... skipped: these tests are for testing by the author t/author-pod-coverage.t .. skipped: these tests are for testing by the author t/author-pod-syntax.t .... skipped: these tests are for testing by the author t/Index.t ................ 1..4 ok 1 - use Bio::Index::Stockholm; ok 2 - An object of class 'Bio::Index::Stockholm' isa 'Bio::Index::Stockholm' ok 3 ok 4 - An object of class 'Bio::SimpleAlign' isa 'Bio::SimpleAlign' ok All tests successful. Files=7, Tests=93, 3 wallclock secs ( 0.11 usr 0.02 sys + 2.42 cusr 0.24 csys = 2.79 CPU) Result: PASS make[1]: Leaving directory '/build/libbio-alignio-stockholm-perl-1.7.3' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-alignio-stockholm-perl/ make -j8 install DESTDIR=/build/libbio-alignio-stockholm-perl-1.7.3/debian/libbio-alignio-stockholm-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/libbio-alignio-stockholm-perl-1.7.3' Manifying 2 pod documents Installing /build/libbio-alignio-stockholm-perl-1.7.3/debian/libbio-alignio-stockholm-perl/usr/share/perl5/Bio/Index/Stockholm.pm Installing /build/libbio-alignio-stockholm-perl-1.7.3/debian/libbio-alignio-stockholm-perl/usr/share/perl5/Bio/AlignIO/stockholm.pm Installing /build/libbio-alignio-stockholm-perl-1.7.3/debian/libbio-alignio-stockholm-perl/usr/share/man/man3/Bio::Index::Stockholm.3pm Installing /build/libbio-alignio-stockholm-perl-1.7.3/debian/libbio-alignio-stockholm-perl/usr/share/man/man3/Bio::AlignIO::stockholm.3pm make[1]: Leaving directory '/build/libbio-alignio-stockholm-perl-1.7.3' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-alignio-stockholm-perl' in '../libbio-alignio-stockholm-perl_1.7.3-2_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-alignio-stockholm-perl_1.7.3-2_arm64.buildinfo dpkg-genchanges --build=binary -O../libbio-alignio-stockholm-perl_1.7.3-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/32231 and its subdirectories I: Current time: Tue Jul 2 03:45:54 -12 2024 I: pbuilder-time-stamp: 1719935154