I: pbuilder: network access will be disabled during build I: Current time: Sat Jun 8 11:42:02 +14 2024 I: pbuilder-time-stamp: 1717796522 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [elpa-snakemake_2.0.0-3.dsc] I: copying [./elpa-snakemake_2.0.0.orig.tar.xz] I: copying [./elpa-snakemake_2.0.0-3.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Feb 10 13:52:44 2023 +14 gpgv: using RSA key 4D055C31E4812045F9010D75990D38367334D770 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./elpa-snakemake_2.0.0-3.dsc: no acceptable signature found dpkg-source: info: extracting elpa-snakemake in elpa-snakemake-2.0.0 dpkg-source: info: unpacking elpa-snakemake_2.0.0.orig.tar.xz dpkg-source: info: unpacking elpa-snakemake_2.0.0-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/10603/tmp/hooks/D01_modify_environment starting debug: Running on codethink13-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 8 11:42 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/10603/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/10603/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.15(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DIRSTACK=() DISTRIBUTION=bookworm EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/var/lib/jenkins HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=10603 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ollmpZg0/pbuilderrc_Br0h --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ollmpZg0/b2 --logfile b2/build.log --extrapackages usrmerge elpa-snakemake_2.0.0-3.dsc' SUDO_GID=117 SUDO_UID=110 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root USERNAME=root _='I: set' http_proxy=http://192.168.101.16:3128 I: uname -a Linux i-capture-the-hostname 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 6 2023 /bin -> usr/bin I: user script /srv/workspace/pbuilder/10603/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-elpa, elpa-transient, snakemake dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-elpa; however: Package dh-elpa is not installed. pbuilder-satisfydepends-dummy depends on elpa-transient; however: Package elpa-transient is not installed. pbuilder-satisfydepends-dummy depends on snakemake; however: Package snakemake is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} coinor-cbc{a} coinor-libcbc3{a} coinor-libcgl1{a} coinor-libclp1{a} coinor-libcoinutils3v5{a} coinor-libosi1v5{a} debhelper{a} dh-autoreconf{a} dh-elpa{a} dh-elpa-helper{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} elpa-transient{a} emacs-bin-common{a} emacs-common{a} emacs-el{a} emacs-nox{a} emacsen-common{a} file{a} fonts-glyphicons-halflings{a} gettext{a} gettext-base{a} gir1.2-glib-2.0{a} git{a} git-man{a} groff-base{a} install-info{a} intltool-debian{a} libapt-pkg-perl{a} libarchive-zip-perl{a} libarray-unique-perl{a} libarray-utils-perl{a} libasound2{a} libasound2-data{a} libblas3{a} libbrotli1{a} libcgi-pm-perl{a} libclass-accessor-perl{a} libclone-perl{a} libconfig-tiny-perl{a} libcurl3-gnutls{a} libdatrie1{a} libdbus-1-3{a} libdebhelper-perl{a} libdebian-source-perl{a} libelf1{a} libencode-locale-perl{a} liberror-perl{a} libexpat1{a} libexporter-lite-perl{a} libexporter-tiny-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libgccjit0{a} libgfortran5{a} libgirepository-1.0-1{a} libglib2.0-0{a} libgpm2{a} libhtml-form-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-stringy-perl{a} libjs-bootstrap{a} libjs-jquery{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} liblist-moreutils-perl{a} liblist-moreutils-xs-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libparse-debcontrol-perl{a} libpipeline1{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libregexp-ipv6-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsodium23{a} libssh2-1{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libtie-ixhash-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-mechanize-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} python3{a} python3-adal{a} python3-aiohttp{a} python3-aiosignal{a} python3-appdirs{a} python3-async-timeout{a} python3-attr{a} python3-avro{a} python3-azure{a} python3-azure-storage{a} python3-bcrypt{a} python3-blinker{a} python3-boto3{a} python3-botocore{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-colorama{a} python3-configargparse{a} python3-connection-pool{a} python3-cryptography{a} python3-dateutil{a} python3-datrie{a} python3-decorator{a} python3-distutils{a} python3-docutils{a} python3-fastjsonschema{a} python3-frozenlist{a} python3-gi{a} python3-git{a} python3-gitdb{a} python3-humanfriendly{a} python3-idna{a} python3-isodate{a} python3-jinja2{a} python3-jmespath{a} python3-jsonschema{a} python3-jupyter-core{a} python3-jwt{a} python3-lib2to3{a} python3-markupsafe{a} python3-marshmallow{a} python3-minimal{a} python3-msal{a} python3-msal-extensions{a} python3-msrest{a} python3-msrestazure{a} python3-multidict{a} python3-nacl{a} python3-nbformat{a} python3-oauthlib{a} python3-packaging{a} python3-paramiko{a} python3-pkg-resources{a} python3-portalocker{a} python3-psutil{a} python3-pulp{a} python3-py{a} python3-pyparsing{a} python3-pyrsistent{a} python3-ratelimiter{a} python3-requests{a} python3-requests-oauthlib{a} python3-retry{a} python3-roman{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-s3transfer{a} python3-six{a} python3-smart-open{a} python3-smmap{a} python3-stopit{a} python3-strictyaml{a} python3-tabulate{a} python3-throttler{a} python3-toposort{a} python3-tqdm{a} python3-traitlets{a} python3-typing-extensions{a} python3-uamqp{a} python3-urllib3{a} python3-wrapt{a} python3-yaml{a} python3-yarl{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} snakemake{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf curl cwltool dbus emacs emacs-gtk emacs-lucid graphicsmagick-imagemagick-compat imagemagick imagemagick-6.q16 javascript-common less libarchive-cpio-perl libcgi-fast-perl libdata-dump-perl libglib2.0-data libhtml-format-perl libhttp-daemon-perl libldap-common libltdl-dev libmail-sendmail-perl libmailtools-perl libpaper-utils libsasl2-modules lynx mailutils openssh-client publicsuffix python3-babel python3-biopython python3-dropbox python3-flask python3-ftputil python3-invoke python3-irodsclient python3-json-pointer python3-kubernetes python3-pil python3-pygments python3-rfc3987 python3-tz python3-uritemplate python3-webcolors python3-yappi shared-mime-info wget xdg-user-dirs 0 packages upgraded, 217 newly installed, 0 to remove and 0 not upgraded. Need to get 114 MB of archives. After unpacking 1027 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 install-info arm64 6.8-6+b1 [167 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1+b1 [9296 B] Get: 12 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1+b1 [26.3 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 sgml-base all 1.31 [15.4 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 netbase all 6.4 [12.8 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 openssl arm64 3.0.8-1 [1373 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 ca-certificates all 20230311 [153 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 libblas3 arm64 3.11.0-2 [91.4 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 libgfortran5 arm64 12.2.0-14 [340 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 liblapack3 arm64 3.11.0-2 [1664 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 coinor-libcoinutils3v5 arm64 2.11.4+repack1-2 [377 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 coinor-libosi1v5 arm64 0.108.6+repack1-2 [229 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 coinor-libclp1 arm64 1.17.6-3 [701 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 coinor-libcgl1 arm64 0.60.3+repack1-4 [335 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 coinor-libcbc3 arm64 2.10.8+ds1-1 [608 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 coinor-cbc arm64 2.10.8+ds1-1 [14.8 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 46 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 48 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 53 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 libapt-pkg-perl arm64 0.1.40+b2 [66.1 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 libarray-unique-perl all 0.08-4 [11.2 kB] Get: 58 http://deb.debian.org/debian bookworm/main arm64 libsub-name-perl arm64 0.26-2+b1 [12.4 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 libclass-accessor-perl all 0.51-2 [22.7 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 libexporter-tiny-perl all 1.006000-1 [38.6 kB] Get: 61 http://deb.debian.org/debian bookworm/main arm64 liblist-moreutils-xs-perl arm64 0.430-3+b1 [37.5 kB] Get: 62 http://deb.debian.org/debian bookworm/main arm64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get: 63 http://deb.debian.org/debian bookworm/main arm64 libio-stringy-perl all 2.111-3 [56.5 kB] Get: 64 http://deb.debian.org/debian bookworm/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 65 http://deb.debian.org/debian bookworm/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 66 http://deb.debian.org/debian bookworm/main arm64 libhttp-date-perl all 6.05-2 [10.5 kB] Get: 67 http://deb.debian.org/debian bookworm/main arm64 libfile-listing-perl all 6.15-1 [12.6 kB] Get: 68 http://deb.debian.org/debian bookworm/main arm64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get: 69 http://deb.debian.org/debian bookworm/main arm64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get: 70 http://deb.debian.org/debian bookworm/main arm64 liburi-perl all 5.17-1 [90.4 kB] Get: 71 http://deb.debian.org/debian bookworm/main arm64 libhtml-parser-perl arm64 3.81-1 [98.6 kB] Get: 72 http://deb.debian.org/debian bookworm/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 73 http://deb.debian.org/debian bookworm/main arm64 libclone-perl arm64 0.46-1 [13.5 kB] Get: 74 http://deb.debian.org/debian bookworm/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 75 http://deb.debian.org/debian bookworm/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 76 http://deb.debian.org/debian bookworm/main arm64 libhttp-message-perl all 6.44-1 [81.7 kB] Get: 77 http://deb.debian.org/debian bookworm/main arm64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get: 78 http://deb.debian.org/debian bookworm/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 79 http://deb.debian.org/debian bookworm/main arm64 perl-openssl-defaults arm64 7+b1 [7924 B] Get: 80 http://deb.debian.org/debian bookworm/main arm64 libnet-ssleay-perl arm64 1.92-2+b1 [308 kB] Get: 81 http://deb.debian.org/debian bookworm/main arm64 libio-socket-ssl-perl all 2.081-2 [219 kB] Get: 82 http://deb.debian.org/debian bookworm/main arm64 libnet-http-perl all 6.22-1 [25.3 kB] Get: 83 http://deb.debian.org/debian bookworm/main arm64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get: 84 http://deb.debian.org/debian bookworm/main arm64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 85 http://deb.debian.org/debian bookworm/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 86 http://deb.debian.org/debian bookworm/main arm64 libwww-perl all 6.68-1 [186 kB] Get: 87 http://deb.debian.org/debian bookworm/main arm64 liberror-perl all 0.17029-2 [29.0 kB] Get: 88 http://deb.debian.org/debian bookworm/main arm64 libexporter-lite-perl all 0.09-2 [10.7 kB] Get: 89 http://deb.debian.org/debian bookworm/main arm64 libparse-debcontrol-perl all 2.005-6 [21.6 kB] Get: 90 http://deb.debian.org/debian bookworm/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 91 http://deb.debian.org/debian bookworm/main arm64 libtie-ixhash-perl all 1.23-4 [11.7 kB] Get: 92 http://deb.debian.org/debian bookworm/main arm64 libcgi-pm-perl all 4.55-1 [220 kB] Get: 93 http://deb.debian.org/debian bookworm/main arm64 libhtml-form-perl all 6.11-1 [33.1 kB] Get: 94 http://deb.debian.org/debian bookworm/main arm64 libwww-mechanize-perl all 2.16-1 [116 kB] Get: 95 http://deb.debian.org/debian bookworm/main arm64 libdebian-source-perl all 0.122 [63.7 kB] Get: 96 http://deb.debian.org/debian bookworm/main arm64 emacs-el all 1:28.2+1-14 [16.9 MB] Get: 97 http://deb.debian.org/debian bookworm/main arm64 emacsen-common all 3.0.5 [12.3 kB] Get: 98 http://deb.debian.org/debian bookworm/main arm64 emacs-common all 1:28.2+1-14 [14.0 MB] Get: 99 http://deb.debian.org/debian bookworm/main arm64 emacs-bin-common arm64 1:28.2+1-14 [96.3 kB] Get: 100 http://deb.debian.org/debian bookworm/main arm64 libasound2-data all 1.2.8-1 [20.5 kB] Get: 101 http://deb.debian.org/debian bookworm/main arm64 libasound2 arm64 1.2.8-1+b1 [327 kB] Get: 102 http://deb.debian.org/debian bookworm/main arm64 libdbus-1-3 arm64 1.14.6-1 [191 kB] Get: 103 http://deb.debian.org/debian bookworm/main arm64 libgccjit0 arm64 12.2.0-14 [7145 kB] Get: 104 http://deb.debian.org/debian bookworm/main arm64 libgpm2 arm64 1.20.7-10+b1 [14.4 kB] Get: 105 http://deb.debian.org/debian bookworm/main arm64 liblcms2-2 arm64 2.14-2 [143 kB] Get: 106 http://deb.debian.org/debian bookworm/main arm64 emacs-nox arm64 1:28.2+1-14 [5379 kB] Get: 107 http://deb.debian.org/debian bookworm/main arm64 libarray-utils-perl all 0.5-3 [6184 B] Get: 108 http://deb.debian.org/debian bookworm/main arm64 libconfig-tiny-perl all 2.28-2 [16.4 kB] Get: 109 http://deb.debian.org/debian bookworm/main arm64 dh-elpa all 2.0.16 [31.0 kB] Get: 110 http://deb.debian.org/debian bookworm/main arm64 dh-elpa-helper all 2.0.16 [8196 B] Get: 111 http://deb.debian.org/debian bookworm/main arm64 xml-core all 0.18+nmu1 [23.8 kB] Get: 112 http://deb.debian.org/debian bookworm/main arm64 docutils-common all 0.19+dfsg-6 [127 kB] Get: 113 http://deb.debian.org/debian bookworm/main arm64 elpa-transient all 0.3.7-1 [38.7 kB] Get: 114 http://deb.debian.org/debian bookworm/main arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 115 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-0 arm64 2.74.6-2 [1310 kB] Get: 116 http://deb.debian.org/debian bookworm/main arm64 libgirepository-1.0-1 arm64 1.74.0-3 [93.2 kB] Get: 117 http://deb.debian.org/debian bookworm/main arm64 gir1.2-glib-2.0 arm64 1.74.0-3 [160 kB] Get: 118 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB] Get: 119 http://deb.debian.org/debian bookworm/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-10 [20.8 kB] Get: 120 http://deb.debian.org/debian bookworm/main arm64 libsasl2-2 arm64 2.1.28+dfsg-10 [58.0 kB] Get: 121 http://deb.debian.org/debian bookworm/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-5 [171 kB] Get: 122 http://deb.debian.org/debian bookworm/main arm64 libnghttp2-14 arm64 1.52.0-1 [67.9 kB] Get: 123 http://deb.debian.org/debian bookworm/main arm64 libpsl5 arm64 0.21.2-1 [58.6 kB] Get: 124 http://deb.debian.org/debian bookworm/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 125 http://deb.debian.org/debian bookworm/main arm64 libssh2-1 arm64 1.10.0-3+b1 [172 kB] Get: 126 http://deb.debian.org/debian bookworm/main arm64 libcurl3-gnutls arm64 7.88.1-9 [357 kB] Get: 127 http://deb.debian.org/debian bookworm/main arm64 git-man all 1:2.39.2-1.1 [2049 kB] Get: 128 http://deb.debian.org/debian bookworm/main arm64 git arm64 1:2.39.2-1.1 [7023 kB] Get: 129 http://deb.debian.org/debian bookworm/main arm64 libdatrie1 arm64 0.2.13-2+b1 [42.6 kB] Get: 130 http://deb.debian.org/debian bookworm/main arm64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 131 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 132 http://deb.debian.org/debian bookworm/main arm64 libsodium23 arm64 1.0.18-1 [119 kB] Get: 133 http://deb.debian.org/debian bookworm/main arm64 libyaml-0-2 arm64 0.2.5-1 [50.4 kB] Get: 134 http://deb.debian.org/debian bookworm/main arm64 python3-cffi-backend arm64 1.15.1-5+b1 [84.4 kB] Get: 135 http://deb.debian.org/debian bookworm/main arm64 python3-cryptography arm64 38.0.4-3 [589 kB] Get: 136 http://deb.debian.org/debian bookworm/main arm64 python3-six all 1.16.0-4 [17.5 kB] Get: 137 http://deb.debian.org/debian bookworm/main arm64 python3-dateutil all 2.8.2-2 [78.3 kB] Get: 138 http://deb.debian.org/debian bookworm/main arm64 python3-jwt all 2.6.0-1 [26.6 kB] Get: 139 http://deb.debian.org/debian bookworm/main arm64 python3-certifi all 2022.9.24-1 [153 kB] Get: 140 http://deb.debian.org/debian bookworm/main arm64 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get: 141 http://deb.debian.org/debian bookworm/main arm64 python3-idna all 3.3-1 [39.4 kB] Get: 142 http://deb.debian.org/debian bookworm/main arm64 python3-urllib3 all 1.26.12-1 [117 kB] Get: 143 http://deb.debian.org/debian bookworm/main arm64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 144 http://deb.debian.org/debian bookworm/main arm64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get: 145 http://deb.debian.org/debian bookworm/main arm64 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get: 146 http://deb.debian.org/debian bookworm/main arm64 python3-adal all 1.2.7-2 [32.1 kB] Get: 147 http://deb.debian.org/debian bookworm/main arm64 python3-multidict arm64 6.0.4-1+b1 [31.6 kB] Get: 148 http://deb.debian.org/debian bookworm/main arm64 python3-yarl arm64 1.8.2-1+b1 [46.3 kB] Get: 149 http://deb.debian.org/debian bookworm/main arm64 python3-typing-extensions all 4.4.0-1 [45.2 kB] Get: 150 http://deb.debian.org/debian bookworm/main arm64 python3-async-timeout all 4.0.2-1 [7476 B] Get: 151 http://deb.debian.org/debian bookworm/main arm64 python3-frozenlist arm64 1.3.3-1+b1 [28.0 kB] Get: 152 http://deb.debian.org/debian bookworm/main arm64 python3-aiosignal all 1.3.1-1 [6016 B] Get: 153 http://deb.debian.org/debian bookworm/main arm64 python3-attr all 22.2.0-1 [65.4 kB] Get: 154 http://deb.debian.org/debian bookworm/main arm64 python3-aiohttp arm64 3.8.4-1 [239 kB] Get: 155 http://deb.debian.org/debian bookworm/main arm64 python3-appdirs all 1.4.4-3 [13.0 kB] Get: 156 http://deb.debian.org/debian bookworm/main arm64 python3-avro all 1.11.1+dfsg-2 [70.5 kB] Get: 157 http://deb.debian.org/debian bookworm/main arm64 python3-isodate all 0.6.1-1 [25.3 kB] Get: 158 http://deb.debian.org/debian bookworm/main arm64 python3-blinker all 1.5-1 [14.7 kB] Get: 159 http://deb.debian.org/debian bookworm/main arm64 python3-oauthlib all 3.2.2-1 [95.4 kB] Get: 160 http://deb.debian.org/debian bookworm/main arm64 python3-requests-oauthlib all 1.3.0+ds-1 [20.7 kB] Get: 161 http://deb.debian.org/debian bookworm/main arm64 python3-msrest all 0.6.21-2 [48.0 kB] Get: 162 http://deb.debian.org/debian bookworm/main arm64 python3-msrestazure all 0.6.4-2 [26.4 kB] Get: 163 http://deb.debian.org/debian bookworm/main arm64 python3-azure-storage all 20230112+git-1 [280 kB] Get: 164 http://deb.debian.org/debian bookworm/main arm64 python3-colorama all 0.4.6-2 [36.8 kB] Get: 165 http://deb.debian.org/debian bookworm/main arm64 python3-pyrsistent arm64 0.18.1-1+b3 [59.4 kB] Get: 166 http://deb.debian.org/debian bookworm/main arm64 python3-jsonschema all 4.10.3-1 [67.9 kB] Get: 167 http://deb.debian.org/debian bookworm/main arm64 python3-packaging all 23.0-1 [32.5 kB] Get: 168 http://deb.debian.org/debian bookworm/main arm64 python3-marshmallow all 3.18.0-1 [66.3 kB] Get: 169 http://deb.debian.org/debian bookworm/main arm64 python3-msal all 1.21.0-1 [85.9 kB] Get: 170 http://deb.debian.org/debian bookworm/main arm64 python3-gi arm64 3.42.2-3+b1 [212 kB] Get: 171 http://deb.debian.org/debian bookworm/main arm64 python3-portalocker all 2.2.1-1 [18.5 kB] Get: 172 http://deb.debian.org/debian bookworm/main arm64 python3-msal-extensions all 1.0.0-2 [16.9 kB] Get: 173 http://deb.debian.org/debian bookworm/main arm64 python3-ruamel.yaml.clib arm64 0.2.7-1+b2 [98.1 kB] Get: 174 http://deb.debian.org/debian bookworm/main arm64 python3-ruamel.yaml all 0.17.21-1 [103 kB] Get: 175 http://deb.debian.org/debian bookworm/main arm64 python3-strictyaml all 1.6.1-3 [92.9 kB] Get: 176 http://deb.debian.org/debian bookworm/main arm64 python3-tqdm all 4.64.1-1 [97.7 kB] Get: 177 http://deb.debian.org/debian bookworm/main arm64 python3-uamqp arm64 1.5.3-1+b4 [601 kB] Get: 178 http://deb.debian.org/debian bookworm/main arm64 python3-yaml arm64 6.0-3+b2 [108 kB] Get: 179 http://deb.debian.org/debian bookworm/main arm64 python3-azure all 20230112+git-1 [11.9 MB] Get: 180 http://deb.debian.org/debian bookworm/main arm64 python3-bcrypt arm64 3.2.2-1 [28.5 kB] Get: 181 http://deb.debian.org/debian bookworm/main arm64 python3-jmespath all 1.0.1-1 [21.1 kB] Get: 182 http://deb.debian.org/debian bookworm/main arm64 python3-botocore all 1.29.27+repack-1 [5502 kB] Get: 183 http://deb.debian.org/debian bookworm/main arm64 python3-s3transfer all 0.6.0-1 [53.0 kB] Get: 184 http://deb.debian.org/debian bookworm/main arm64 python3-boto3 all 1.26.27+dfsg-1 [187 kB] Get: 185 http://deb.debian.org/debian bookworm/main arm64 python3-configargparse all 1.5.3-1 [26.1 kB] Get: 186 http://deb.debian.org/debian bookworm/main arm64 python3-connection-pool all 0.0.3-2 [5584 B] Get: 187 http://deb.debian.org/debian bookworm/main arm64 python3-datrie arm64 0.8.2-4+b1 [87.0 kB] Get: 188 http://deb.debian.org/debian bookworm/main arm64 python3-decorator all 5.1.1-3 [14.9 kB] Get: 189 http://deb.debian.org/debian bookworm/main arm64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 190 http://deb.debian.org/debian bookworm/main arm64 python3-distutils all 3.11.2-2 [131 kB] Get: 191 http://deb.debian.org/debian bookworm/main arm64 python3-roman all 3.3-3 [9880 B] Get: 192 http://deb.debian.org/debian bookworm/main arm64 python3-docutils all 0.19+dfsg-6 [382 kB] Get: 193 http://deb.debian.org/debian bookworm/main arm64 python3-fastjsonschema all 2.16.3-2 [21.6 kB] Get: 194 http://deb.debian.org/debian bookworm/main arm64 python3-smmap all 5.0.0-1 [21.0 kB] Get: 195 http://deb.debian.org/debian bookworm/main arm64 python3-gitdb all 4.0.9-2 [45.7 kB] Get: 196 http://deb.debian.org/debian bookworm/main arm64 python3-git all 3.1.30-1 [135 kB] Get: 197 http://deb.debian.org/debian bookworm/main arm64 python3-humanfriendly all 10.0-3 [85.2 kB] Get: 198 http://deb.debian.org/debian bookworm/main arm64 python3-markupsafe arm64 2.1.2-1+b1 [13.3 kB] Get: 199 http://deb.debian.org/debian bookworm/main arm64 python3-jinja2 all 3.1.2-1 [119 kB] Get: 200 http://deb.debian.org/debian bookworm/main arm64 python3-traitlets all 5.5.0-1 [92.4 kB] Get: 201 http://deb.debian.org/debian bookworm/main arm64 python3-jupyter-core all 4.12.0-1 [27.3 kB] Get: 202 http://deb.debian.org/debian bookworm/main arm64 python3-nacl arm64 1.5.0-2 [56.3 kB] Get: 203 http://deb.debian.org/debian bookworm/main arm64 python3-nbformat all 5.5.0-1 [43.2 kB] Get: 204 http://deb.debian.org/debian bookworm/main arm64 python3-paramiko all 2.12.0-2 [133 kB] Get: 205 http://deb.debian.org/debian bookworm/main arm64 python3-psutil arm64 5.9.4-1+b1 [189 kB] Get: 206 http://deb.debian.org/debian bookworm/main arm64 python3-pyparsing all 3.0.9-1 [138 kB] Get: 207 http://deb.debian.org/debian bookworm/main arm64 python3-pulp all 2.6.0+dfsg-1 [66.0 kB] Get: 208 http://deb.debian.org/debian bookworm/main arm64 python3-py all 1.11.0-1 [89.2 kB] Get: 209 http://deb.debian.org/debian bookworm/main arm64 python3-ratelimiter arm64 1.2.0.post0-4 [5740 B] Get: 210 http://deb.debian.org/debian bookworm/main arm64 python3-retry all 0.9.2-2 [7020 B] Get: 211 http://deb.debian.org/debian bookworm/main arm64 python3-smart-open all 5.2.1-5 [87.9 kB] Get: 212 http://deb.debian.org/debian bookworm/main arm64 python3-stopit all 1.1.2-2 [12.6 kB] Get: 213 http://deb.debian.org/debian bookworm/main arm64 python3-tabulate all 0.8.9-1 [35.2 kB] Get: 214 http://deb.debian.org/debian bookworm/main arm64 python3-throttler all 1.2.2-2 [7072 B] Get: 215 http://deb.debian.org/debian bookworm/main arm64 python3-toposort all 1.9-1 [7272 B] Get: 216 http://deb.debian.org/debian bookworm/main arm64 python3-wrapt arm64 1.14.1-2+b2 [41.2 kB] Get: 217 http://deb.debian.org/debian bookworm/main arm64 snakemake all 7.21.0-1 [301 kB] Fetched 114 MB in 3s (40.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.2-6) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.5.0-1_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_arm64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:arm64 (3.11.2-6) ... Setting up libexpat1:arm64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19932 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.11.2-1+b1_arm64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package install-info. Preparing to unpack .../install-info_6.8-6+b1_arm64.deb ... Unpacking install-info (6.8-6+b1) ... Setting up install-info (6.8-6+b1) ... Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19975 files and directories currently installed.) Preparing to unpack .../readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../libreadline8_8.2-1.3_arm64.deb ... Unpacking libreadline8:arm64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../libpython3.11-stdlib_3.11.2-6_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../python3.11_3.11.2-6_arm64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../libpython3-stdlib_3.11.2-1+b1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20381 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_arm64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package netbase. Preparing to unpack .../002-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../004-openssl_3.0.8-1_arm64.deb ... Unpacking openssl (3.0.8-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../005-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../007-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../009-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../010-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../011-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../012-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../013-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../014-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../015-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../016-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../017-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../018-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../019-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../020-libblas3_3.11.0-2_arm64.deb ... Unpacking libblas3:arm64 (3.11.0-2) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../021-libgfortran5_12.2.0-14_arm64.deb ... Unpacking libgfortran5:arm64 (12.2.0-14) ... 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Setting up libhtml-tagset-perl (3.20-6) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b6) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up libnghttp2-14:arm64 (1.52.0-1) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up perl-openssl-defaults:arm64 (7+b1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.44-3) ... Setting up libconfig-tiny-perl (2.28-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg-10) ... Setting up liberror-perl (0.17029-2) ... Setting up libasound2-data (1.2.8-1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.11.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up emacsen-common (3.0.5) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up dh-elpa-helper (2.0.16) ... Setting up libdbus-1-3:arm64 (1.14.6-1) ... Setting up libarray-unique-perl (0.08-4) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.21-12) ... Setting up elpa-transient (0.3.7-1) ... Setting up liblist-moreutils-xs-perl (0.430-3+b1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg-10) ... Setting up libgfortran5:arm64 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up libexporter-lite-perl (0.09-2) ... Setting up libsub-name-perl:arm64 (0.26-2+b1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libasound2:arm64 (1.2.8-1+b1) ... Setting up libsub-override-perl (0.09-4) ... Setting up git-man (1:2.39.2-1.1) ... Setting up libgirepository-1.0-1:arm64 (1.74.0-3) ... Setting up libssh2-1:arm64 (1.10.0-3+b1) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libexporter-tiny-perl (1.006000-1) ... Setting up libclass-accessor-perl (0.51-2) ... Setting up libgccjit0:arm64 (12.2.0-14) ... Setting up openssl (3.0.8-1) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ... Setting up liburi-perl (5.17-1) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up libnet-ssleay-perl:arm64 (1.92-2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up liblapack3:arm64 (3.11.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.21-12) ... Setting up libfile-listing-perl (6.15-1) ... Setting up libtool (2.4.7-5) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libreadline8:arm64 (8.2-1.3) ... Setting up libnet-http-perl (6.22-1) ... Setting up libldap-2.5-0:arm64 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up coinor-libcoinutils3v5:arm64 (2.11.4+repack1-2) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up gir1.2-glib-2.0:arm64 (1.74.0-3) ... Setting up coinor-libosi1v5:arm64 (0.108.6+repack1-2) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up xml-core (0.18+nmu1) ... Setting up libhtml-parser-perl:arm64 (3.81-1) ... Setting up libio-socket-ssl-perl (2.081-2) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libpython3.11-stdlib:arm64 (3.11.2-6) ... Setting up libcgi-pm-perl (4.55-1) ... Setting up libcurl3-gnutls:arm64 (7.88.1-9) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up coinor-libclp1:arm64 (1.17.6-3) ... Setting up git (1:2.39.2-1.1) ... Setting up coinor-libcgl1:arm64 (0.60.3+repack1-4) ... Setting up libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up coinor-libcbc3:arm64 (2.10.8+ds1-1) ... Setting up python3.11 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-markupsafe (2.1.2-1+b1) ... Setting up python3-psutil (5.9.4-1+b1) ... Setting up python3-multidict (6.0.4-1+b1) ... Setting up python3-frozenlist (1.3.3-1+b1) ... Setting up python3-aiosignal (1.3.1-1) ... Setting up python3-ratelimiter (1.2.0.post0-4) ... Setting up python3-async-timeout (4.0.2-1) ... Setting up python3-six (1.16.0-4) ... Setting up python3-isodate (0.6.1-1) ... Setting up python3-roman (3.3-3) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-jinja2 (3.1.2-1) ... Setting up python3-packaging (23.0-1) ... Setting up coinor-cbc (2.10.8+ds1-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up python3-humanfriendly (10.0-3) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-avro (1.11.1+dfsg-2) ... Setting up python3-jmespath (1.0.1-1) ... Setting up python3-gi (3.42.2-3+b1) ... Setting up python3-connection-pool (0.0.3-2) ... Setting up python3-idna (3.3-1) ... Setting up python3-wrapt (1.14.1-2+b2) ... Setting up python3-throttler (1.2.2-2) ... Setting up python3-typing-extensions (4.4.0-1) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up python3-fastjsonschema (2.16.3-2) ... Setting up python3-pyrsistent:arm64 (0.18.1-1+b3) ... Setting up python3-traitlets (5.5.0-1) ... Setting up python3-portalocker (2.2.1-1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-datrie:arm64 (0.8.2-4+b1) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up python3-appdirs (1.4.4-3) ... Setting up python3-yarl (1.8.2-1+b1) ... Setting up python3-smmap (5.0.0-1) ... Setting up python3-cffi-backend:arm64 (1.15.1-5+b1) ... Setting up python3-blinker (1.5-1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-2) ... Setting up python3-toposort (1.9-1) ... Setting up python3-configargparse (1.5.3-1) ... Setting up python3-attr (22.2.0-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-jwt (2.6.0-1) ... Setting up python3-colorama (0.4.6-2) ... Setting up python3-pulp (2.6.0+dfsg-1) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-bcrypt (3.2.2-1) ... Setting up python3-tqdm (4.64.1-1) ... Setting up python3-ruamel.yaml.clib:arm64 (0.2.7-1+b2) ... Setting up python3-aiohttp (3.8.4-1) ... Setting up python3-marshmallow (3.18.0-1) ... Setting up python3-tabulate (0.8.9-1) ... Setting up python3-yaml (6.0-3+b2) ... Setting up python3-gitdb (4.0.9-2) ... Setting up python3-uamqp (1.5.3-1+b4) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up python3-jsonschema (4.10.3-1) ... Setting up python3-cryptography (38.0.4-3) ... Setting up python3-git (3.1.30-1) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up python3-retry (0.9.2-2) ... Setting up python3-ruamel.yaml (0.17.21-1) ... Setting up python3-adal (1.2.7-2) ... Setting up python3-stopit (1.1.2-2) ... Setting up python3-jupyter-core (4.12.0-1) ... Setting up python3-nacl (1.5.0-2) ... Setting up python3-msal (1.21.0-1) ... Setting up python3-msal-extensions (1.0.0-2) ... Setting up python3-nbformat (5.5.0-1) ... Setting up python3-strictyaml (1.6.1-3) ... Setting up python3-oauthlib (3.2.2-1) ... Setting up python3-botocore (1.29.27+repack-1) ... Setting up python3-paramiko (2.12.0-2) ... Setting up python3-requests-oauthlib (1.3.0+ds-1) ... Setting up python3-s3transfer (0.6.0-1) ... Setting up python3-msrest (0.6.21-2) ... Setting up python3-boto3 (1.26.27+dfsg-1) ... Setting up python3-msrestazure (0.6.4-2) ... Setting up libwww-perl (6.68-1) ... Setting up libparse-debcontrol-perl (2.005-6) ... Setting up libwww-mechanize-perl (2.16-1) ... Setting up emacs-el (1:28.2+1-14) ... Setting up libdebian-source-perl (0.122) ... Setting up python3-azure (20230112+git-1) ... Setting up emacs-common (1:28.2+1-14) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up python3-azure-storage (20230112+git-1) ... Setting up emacs-bin-common (1:28.2+1-14) ... update-alternatives: using /usr/bin/ctags.emacs to provide /usr/bin/ctags (ctags) in auto mode update-alternatives: using /usr/bin/ebrowse.emacs to provide /usr/bin/ebrowse (ebrowse) in auto mode update-alternatives: using /usr/bin/emacsclient.emacs to provide /usr/bin/emacsclient (emacsclient) in auto mode update-alternatives: using /usr/bin/etags.emacs to provide /usr/bin/etags (etags) in auto mode Setting up python3-smart-open (5.2.1-5) ... Setting up emacs-nox (1:28.2+1-14) ... update-alternatives: using /usr/bin/emacs-nox to provide /usr/bin/emacs (emacs) in auto mode update-alternatives: using /usr/bin/emacs to provide /usr/bin/editor (editor) in auto mode Install emacsen-common for emacs emacsen-common: Handling install of emacsen flavor emacs Install elpa-transient for emacs install/transient-0.3.7: Handling install of emacsen flavor emacs install/transient-0.3.7: byte-compiling for emacs Setting up dh-elpa (2.0.16) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for install-info (6.8-6+b1) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.19+dfsg-6) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.19+dfsg-6) ... Setting up snakemake (7.21.0-1) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... usrmerge is already the newest version (35). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/10603/tmp/hooks/A99_set_merged_usr starting Re-configuring usrmerge... I: user script /srv/workspace/pbuilder/10603/tmp/hooks/A99_set_merged_usr finished hostname: Temporary failure in name resolution I: Running cd /build/elpa-snakemake-2.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../elpa-snakemake_2.0.0-3_source.changes dpkg-buildpackage: info: source package elpa-snakemake dpkg-buildpackage: info: source version 2.0.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Diane Trout dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with elpa dh_auto_clean make -j8 clean make[1]: Entering directory '/build/elpa-snakemake-2.0.0' rm -f snakemake.elc snakemake-mode.elc snakemake-autoloads.el make[1]: Leaving directory '/build/elpa-snakemake-2.0.0' dh_clean debian/rules binary dh binary --with elpa dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_elpa_test make[1]: Entering directory '/build/elpa-snakemake-2.0.0' # tests need a writable home HOME=/tmp dh_elpa_test emacs -batch -Q -l package --eval "(add-to-list 'package-directory-list \"/usr/share/emacs/site-lisp/elpa\")" --eval "(add-to-list 'package-directory-list \"/usr/share/emacs/site-lisp/elpa-src\")" -f package-initialize -L . -l snakemake-test.el --eval \(ert-run-tests-batch-and-exit\) Running 20 tests (2024-06-08 11:48:23+1400, selector `t') passed 1/20 snakemake-test-all-rules (3.043819 sec) passed 2/20 snakemake-test-beginning-of-block (0.004037 sec) passed 3/20 snakemake-test-block-info (0.000690 sec) passed 4/20 snakemake-test-block-or-defun-name (0.002416 sec) passed 5/20 snakemake-test-check-target (24.899396 sec) passed 6/20 snakemake-test-end-of-block (0.066029 sec) passed 7/20 snakemake-test-file-targets (0.001894 sec) passed 8/20 snakemake-test-file-targets-at-point (6.890288 sec) passed 9/20 snakemake-test-indent-line/at-rule-block (0.005762 sec) passed 10/20 snakemake-test-indent-line/field-key (0.012297 sec) passed 11/20 snakemake-test-indent-line/field-value (0.014820 sec) passed 12/20 snakemake-test-indent-line/outside-rule (0.001148 sec) passed 13/20 snakemake-test-indent-line/toplevel-command (0.067788 sec) passed 14/20 snakemake-test-org-link-file-targets (2.207501 sec) passed 15/20 snakemake-test-region-file-targets (0.000857 sec) passed 16/20 snakemake-test-rule-at-point (6.827349 sec) passed 17/20 snakemake-test-rule-targets (2.253764 sec) passed 18/20 snakemake-test-snakefile-directory (0.001636 sec) passed 19/20 snakemake-test-split-lines (0.000304 sec) passed 20/20 snakemake-test/indent-region (0.009184 sec) Ran 20 tests, 20 results as expected, 0 unexpected (2024-06-08 11:49:09+1400, 46.316467 sec) make[1]: Leaving directory '/build/elpa-snakemake-2.0.0' create-stamp debian/debhelper-build-stamp dh_prep dh_elpa dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'elpa-snakemake-mode' in '../elpa-snakemake-mode_2.0.0-3_all.deb'. dpkg-deb: building package 'elpa-snakemake' in '../elpa-snakemake_2.0.0-3_all.deb'. dpkg-genbuildinfo --build=binary -O../elpa-snakemake_2.0.0-3_arm64.buildinfo dpkg-genchanges --build=binary -O../elpa-snakemake_2.0.0-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/10603/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/10603/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/10603 and its subdirectories I: Current time: Sat Jun 8 11:49:21 +14 2024 I: pbuilder-time-stamp: 1717796961