I: pbuilder: network access will be disabled during build I: Current time: Sun May 12 09:47:51 +14 2024 I: pbuilder-time-stamp: 1715456871 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [aegean_0.16.0+dfsg-2.dsc] I: copying [./aegean_0.16.0+dfsg.orig.tar.xz] I: copying [./aegean_0.16.0+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Sep 10 08:56:26 2019 +14 gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./aegean_0.16.0+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting aegean in aegean-0.16.0+dfsg dpkg-source: info: unpacking aegean_0.16.0+dfsg.orig.tar.xz dpkg-source: info: unpacking aegean_0.16.0+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add_hardening dpkg-source: info: applying fix_m64_on_some_archs dpkg-source: info: applying remove_license dpkg-source: info: applying adjust_datapath dpkg-source: info: applying follow_links dpkg-source: info: applying includepaths dpkg-source: info: applying 2to3.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/20592/tmp/hooks/D01_modify_environment starting debug: Running on codethink15-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash lrwxrwxrwx 1 root root 4 Jan 6 2023 /bin/sh -> dash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/20592/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/20592/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME='pbuilder2' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='nl_BE:nl' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='20592' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OP0K6ZYT/pbuilderrc_Lcc8 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OP0K6ZYT/b2 --logfile b2/build.log --extrapackages usrmerge aegean_0.16.0+dfsg-2.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT-14' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux i-capture-the-hostname 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 10 06:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/20592/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), libcairo2-dev, libgenometools0-dev, python3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libcairo2-dev; however: Package libcairo2-dev is not installed. pbuilder-satisfydepends-dummy depends on libgenometools0-dev; however: Package libgenometools0-dev is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} genometools-common{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblkid-dev{a} libbrotli-dev{a} libbrotli1{a} libbsd0{a} libcairo-gobject2{a} libcairo-script-interpreter2{a} libcairo2{a} libcairo2-dev{a} libdatrie1{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libffi-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig-dev{a} libfontconfig1{a} libfreetype-dev{a} libfreetype6{a} libfribidi0{a} libgenometools0{a} libgenometools0-dev{a} libglib2.0-0{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libgraphite2-3{a} libharfbuzz0b{a} libice-dev{a} libice6{a} libicu72{a} liblua5.1-0{a} liblzo2-2{a} libmagic-mgc{a} libmagic1{a} libmount-dev{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpixman-1-dev{a} libpkgconf3{a} libpng-dev{a} libpng16-16{a} libpthread-stubs0-dev{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libselinux1-dev{a} libsepol-dev{a} libsm-dev{a} libsm6{a} libsub-override-perl{a} libthai-data{a} libthai0{a} libtool{a} libtre5{a} libuchardet0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb-render0{a} libxcb-render0-dev{a} libxcb-shm0{a} libxcb-shm0-dev{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxml2{a} libxrender-dev{a} libxrender1{a} lua-md5{a} m4{a} man-db{a} media-types{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} uuid-dev{a} x11-common{a} x11proto-core-dev{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl libpng-tools lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 125 newly installed, 0 to remove and 0 not upgraded. Need to get 47.1 MB of archives. After unpacking 180 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1 [26.0 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1 [9012 B] Get: 11 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1 [26.0 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 32 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.1+b3 [619 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 libpng16-16 arm64 1.6.39-2 [269 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 libfreetype6 arm64 2.12.1+dfsg-4 [369 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 fontconfig-config arm64 2.14.1-4 [315 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 libfontconfig1 arm64 2.14.1-4 [381 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 fontconfig arm64 2.14.1-4 [449 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 liblua5.1-0 arm64 5.1.5-9 [104 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 libpixman-1-0 arm64 0.42.2-1 [470 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 libbsd0 arm64 0.11.7-2 [115 kB] Get: 53 http://deb.debian.org/debian bookworm/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 libxcb1 arm64 1.15-1 [143 kB] Get: 55 http://deb.debian.org/debian bookworm/main arm64 libx11-data all 2:1.8.4-2 [292 kB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 libx11-6 arm64 2:1.8.4-2 [736 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 libxcb-render0 arm64 1.15-1 [115 kB] Get: 58 http://deb.debian.org/debian bookworm/main arm64 libxcb-shm0 arm64 1.15-1 [106 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 libxrender1 arm64 1:0.9.10-1.1 [32.0 kB] Get: 61 http://deb.debian.org/debian bookworm/main arm64 libcairo2 arm64 1.16.0-7 [527 kB] Get: 62 http://deb.debian.org/debian bookworm/main arm64 libfribidi0 arm64 1.0.8-2.1 [64.9 kB] Get: 63 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-0 arm64 2.74.6-1 [1311 kB] Get: 64 http://deb.debian.org/debian bookworm/main arm64 libgraphite2-3 arm64 1.3.14-1 [75.6 kB] Get: 65 http://deb.debian.org/debian bookworm/main arm64 libharfbuzz0b arm64 6.0.0+dfsg-3 [1914 kB] Get: 66 http://deb.debian.org/debian bookworm/main arm64 libthai-data all 0.1.29-1 [176 kB] Get: 67 http://deb.debian.org/debian bookworm/main arm64 libdatrie1 arm64 0.2.13-2+b1 [42.6 kB] Get: 68 http://deb.debian.org/debian bookworm/main arm64 libthai0 arm64 0.1.29-1 [56.2 kB] Get: 69 http://deb.debian.org/debian bookworm/main arm64 libpango-1.0-0 arm64 1.50.12+ds-1 [200 kB] Get: 70 http://deb.debian.org/debian bookworm/main arm64 libpangoft2-1.0-0 arm64 1.50.12+ds-1 [44.5 kB] Get: 71 http://deb.debian.org/debian bookworm/main arm64 libpangocairo-1.0-0 arm64 1.50.12+ds-1 [32.0 kB] Get: 72 http://deb.debian.org/debian bookworm/main arm64 libtre5 arm64 0.8.0-7 [53.8 kB] Get: 73 http://deb.debian.org/debian bookworm/main arm64 genometools-common all 1.6.2+ds-3 [194 kB] Get: 74 http://deb.debian.org/debian bookworm/main arm64 uuid-dev arm64 2.38.1-5+b1 [40.5 kB] Get: 75 http://deb.debian.org/debian bookworm/main arm64 libblkid-dev arm64 2.38.1-5+b1 [183 kB] Get: 76 http://deb.debian.org/debian bookworm/main arm64 libbrotli-dev arm64 1.0.9-2+b6 [279 kB] Get: 77 http://deb.debian.org/debian bookworm/main arm64 libcairo-gobject2 arm64 1.16.0-7 [112 kB] Get: 78 http://deb.debian.org/debian bookworm/main arm64 liblzo2-2 arm64 2.10-2 [51.8 kB] Get: 79 http://deb.debian.org/debian bookworm/main arm64 libcairo-script-interpreter2 arm64 1.16.0-7 [147 kB] Get: 80 http://deb.debian.org/debian bookworm/main arm64 libexpat1-dev arm64 2.5.0-1 [135 kB] Get: 81 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Get: 82 http://deb.debian.org/debian bookworm/main arm64 libpng-dev arm64 1.6.39-2 [354 kB] Get: 83 http://deb.debian.org/debian bookworm/main arm64 libfreetype-dev arm64 2.12.1+dfsg-4 [544 kB] Get: 84 http://deb.debian.org/debian bookworm/main arm64 libpkgconf3 arm64 1.8.1-1 [35.3 kB] Get: 85 http://deb.debian.org/debian bookworm/main arm64 pkgconf-bin arm64 1.8.1-1 [28.9 kB] Get: 86 http://deb.debian.org/debian bookworm/main arm64 pkgconf arm64 1.8.1-1 [25.9 kB] Get: 87 http://deb.debian.org/debian bookworm/main arm64 pkg-config arm64 1.8.1-1 [13.7 kB] Get: 88 http://deb.debian.org/debian bookworm/main arm64 libfontconfig-dev arm64 2.14.1-4 [406 kB] Get: 89 http://deb.debian.org/debian bookworm/main arm64 libffi-dev arm64 3.4.4-1 [56.0 kB] Get: 90 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-data all 2.74.6-1 [1208 kB] Get: 91 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-bin arm64 2.74.6-1 [106 kB] Get: 92 http://deb.debian.org/debian bookworm/main arm64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 93 http://deb.debian.org/debian bookworm/main arm64 python3-distutils all 3.11.2-2 [131 kB] Get: 94 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-dev-bin arm64 2.74.6-1 [149 kB] Get: 95 http://deb.debian.org/debian bookworm/main arm64 libsepol-dev arm64 3.4-2 [343 kB] Get: 96 http://deb.debian.org/debian bookworm/main arm64 libpcre2-16-0 arm64 10.42-1 [216 kB] Get: 97 http://deb.debian.org/debian bookworm/main arm64 libpcre2-32-0 arm64 10.42-1 [207 kB] Get: 98 http://deb.debian.org/debian bookworm/main arm64 libpcre2-posix3 arm64 10.42-1 [55.5 kB] Get: 99 http://deb.debian.org/debian bookworm/main arm64 libpcre2-dev arm64 10.42-1 [664 kB] Get: 100 http://deb.debian.org/debian bookworm/main arm64 libselinux1-dev arm64 3.4-1+b5 [159 kB] Get: 101 http://deb.debian.org/debian bookworm/main arm64 libmount-dev arm64 2.38.1-5+b1 [22.5 kB] Get: 102 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-dev arm64 2.74.6-1 [1613 kB] Get: 103 http://deb.debian.org/debian bookworm/main arm64 libpixman-1-dev arm64 0.42.2-1 [491 kB] Get: 104 http://deb.debian.org/debian bookworm/main arm64 x11-common all 1:7.7+23 [252 kB] Get: 105 http://deb.debian.org/debian bookworm/main arm64 libice6 arm64 2:1.0.10-1 [55.6 kB] Get: 106 http://deb.debian.org/debian bookworm/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB] Get: 107 http://deb.debian.org/debian bookworm/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 108 http://deb.debian.org/debian bookworm/main arm64 x11proto-dev all 2022.1-1 [599 kB] Get: 109 http://deb.debian.org/debian bookworm/main arm64 x11proto-core-dev all 2022.1-1 [3528 B] Get: 110 http://deb.debian.org/debian bookworm/main arm64 libice-dev arm64 2:1.0.10-1 [66.0 kB] Get: 111 http://deb.debian.org/debian bookworm/main arm64 libsm-dev arm64 2:1.2.3-1 [37.4 kB] Get: 112 http://deb.debian.org/debian bookworm/main arm64 libxau-dev arm64 1:1.0.9-1 [23.2 kB] Get: 113 http://deb.debian.org/debian bookworm/main arm64 libxdmcp-dev arm64 1:1.1.2-3 [41.2 kB] Get: 114 http://deb.debian.org/debian bookworm/main arm64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 115 http://deb.debian.org/debian bookworm/main arm64 libpthread-stubs0-dev arm64 0.4-1 [5336 B] Get: 116 http://deb.debian.org/debian bookworm/main arm64 libxcb1-dev arm64 1.15-1 [182 kB] Get: 117 http://deb.debian.org/debian bookworm/main arm64 libx11-dev arm64 2:1.8.4-2 [817 kB] Get: 118 http://deb.debian.org/debian bookworm/main arm64 libxcb-render0-dev arm64 1.15-1 [119 kB] Get: 119 http://deb.debian.org/debian bookworm/main arm64 libxcb-shm0-dev arm64 1.15-1 [107 kB] Get: 120 http://deb.debian.org/debian bookworm/main arm64 libxext-dev arm64 2:1.3.4-1+b1 [107 kB] Get: 121 http://deb.debian.org/debian bookworm/main arm64 libxrender-dev arm64 1:0.9.10-1.1 [40.5 kB] Get: 122 http://deb.debian.org/debian bookworm/main arm64 libcairo2-dev arm64 1.16.0-7 [699 kB] Get: 123 http://deb.debian.org/debian bookworm/main arm64 lua-md5 arm64 1.2+git+1+8d87fee-2 [13.0 kB] Get: 124 http://deb.debian.org/debian bookworm/main arm64 libgenometools0 arm64 1.6.2+ds-3 [1187 kB] Get: 125 http://deb.debian.org/debian bookworm/main arm64 libgenometools0-dev arm64 1.6.2+ds-3 [94.5 kB] Fetched 47.1 MB in 3s (15.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. 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Selecting previously unselected package libxdmcp-dev:arm64. Preparing to unpack .../102-libxdmcp-dev_1%3a1.1.2-3_arm64.deb ... Unpacking libxdmcp-dev:arm64 (1:1.1.2-3) ... Selecting previously unselected package xtrans-dev. Preparing to unpack .../103-xtrans-dev_1.4.0-1_all.deb ... Unpacking xtrans-dev (1.4.0-1) ... Selecting previously unselected package libpthread-stubs0-dev:arm64. Preparing to unpack .../104-libpthread-stubs0-dev_0.4-1_arm64.deb ... Unpacking libpthread-stubs0-dev:arm64 (0.4-1) ... Selecting previously unselected package libxcb1-dev:arm64. Preparing to unpack .../105-libxcb1-dev_1.15-1_arm64.deb ... Unpacking libxcb1-dev:arm64 (1.15-1) ... Selecting previously unselected package libx11-dev:arm64. Preparing to unpack .../106-libx11-dev_2%3a1.8.4-2_arm64.deb ... Unpacking libx11-dev:arm64 (2:1.8.4-2) ... Selecting previously unselected package libxcb-render0-dev:arm64. Preparing to unpack .../107-libxcb-render0-dev_1.15-1_arm64.deb ... Unpacking libxcb-render0-dev:arm64 (1.15-1) ... Selecting previously unselected package libxcb-shm0-dev:arm64. Preparing to unpack .../108-libxcb-shm0-dev_1.15-1_arm64.deb ... Unpacking libxcb-shm0-dev:arm64 (1.15-1) ... Selecting previously unselected package libxext-dev:arm64. Preparing to unpack .../109-libxext-dev_2%3a1.3.4-1+b1_arm64.deb ... Unpacking libxext-dev:arm64 (2:1.3.4-1+b1) ... Selecting previously unselected package libxrender-dev:arm64. Preparing to unpack .../110-libxrender-dev_1%3a0.9.10-1.1_arm64.deb ... Unpacking libxrender-dev:arm64 (1:0.9.10-1.1) ... Selecting previously unselected package libcairo2-dev:arm64. Preparing to unpack .../111-libcairo2-dev_1.16.0-7_arm64.deb ... Unpacking libcairo2-dev:arm64 (1.16.0-7) ... Selecting previously unselected package lua-md5:arm64. Preparing to unpack .../112-lua-md5_1.2+git+1+8d87fee-2_arm64.deb ... Unpacking lua-md5:arm64 (1.2+git+1+8d87fee-2) ... Selecting previously unselected package libgenometools0. 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Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libmagic1:arm64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up liblzo2-2:arm64 (2.10-2) ... Setting up file (1:5.44-3) ... Setting up libffi-dev:arm64 (3.4.4-1) ... Setting up libpthread-stubs0-dev:arm64 (0.4-1) ... Setting up libpcre2-16-0:arm64 (10.42-1) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:arm64 (10.42-1) ... Setting up libglib2.0-data (2.74.6-1) ... Setting up libpkgconf3:arm64 (1.8.1-1) ... Setting up lua-md5:arm64 (1.2+git+1+8d87fee-2) ... Setting up libexpat1-dev:arm64 (2.5.0-1) ... Setting up libx11-data (2:1.8.4-2) ... Setting up uuid-dev:arm64 (2.38.1-5+b1) ... Setting up libfribidi0:arm64 (1.0.8-2.1) ... Setting up libpng16-16:arm64 (1.6.39-2) ... Setting up autopoint (0.21-12) ... 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Setting up libblkid-dev:arm64 (2.38.1-5+b1) ... Setting up libice6:arm64 (2:1.0.10-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up libxcb1:arm64 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libxau-dev:arm64 (1:1.0.9-1) ... Setting up libpcre2-dev:arm64 (10.42-1) ... Setting up libice-dev:arm64 (2:1.0.10-1) ... Setting up libtool (2.4.7-5) ... Setting up libxcb-render0:arm64 (1.15-1) ... Setting up libselinux1-dev:arm64 (3.4-1+b5) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libreadline8:arm64 (8.2-1.3) ... Setting up libpng-dev:arm64 (1.6.39-2) ... Setting up libglib2.0-bin (2.74.6-1) ... Setting up libxcb-shm0:arm64 (1.15-1) ... Setting up pkgconf:arm64 (1.8.1-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:arm64 (0.1.29-1) ... Setting up libxdmcp-dev:arm64 (1:1.1.2-3) ... Setting up libfreetype6:arm64 (2.12.1+dfsg-4) ... Setting up x11proto-core-dev (2022.1-1) ... Setting up pkg-config:arm64 (1.8.1-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libx11-6:arm64 (2:1.8.4-2) ... Setting up libharfbuzz0b:arm64 (6.0.0+dfsg-3) ... Setting up libfontconfig1:arm64 (2.14.1-4) ... Setting up libsm6:arm64 (2:1.2.3-1) ... Setting up libmount-dev:arm64 (2.38.1-5+b1) ... Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libxcb1-dev:arm64 (1.15-1) ... Setting up libxrender1:arm64 (1:0.9.10-1.1) ... Setting up libsm-dev:arm64 (2:1.2.3-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.2-6) ... Setting up libpango-1.0-0:arm64 (1.50.12+ds-1) ... Setting up libx11-dev:arm64 (2:1.8.4-2) ... Setting up libxext6:arm64 (2:1.3.4-1+b1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:arm64 (1.16.0-7) ... Setting up libfreetype-dev:arm64 (2.12.1+dfsg-4) ... Setting up libxcb-shm0-dev:arm64 (1.15-1) ... Setting up libxcb-render0-dev:arm64 (1.15-1) ... Setting up libxext-dev:arm64 (2:1.3.4-1+b1) ... Setting up libcairo-gobject2:arm64 (1.16.0-7) ... Setting up libpangoft2-1.0-0:arm64 (1.50.12+ds-1) ... Setting up libxrender-dev:arm64 (1:0.9.10-1.1) ... Setting up libpangocairo-1.0-0:arm64 (1.50.12+ds-1) ... Setting up libpython3-stdlib:arm64 (3.11.2-1) ... Setting up libcairo-script-interpreter2:arm64 (1.16.0-7) ... Setting up python3.11 (3.11.2-6) ... Setting up libfontconfig-dev:arm64 (2.14.1-4) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1) ... Setting up genometools-common (1.6.2+ds-3) ... Setting up libgenometools0 (1.6.2+ds-3) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up python3-distutils (3.11.2-2) ... Setting up libglib2.0-dev-bin (2.74.6-1) ... Setting up libglib2.0-dev:arm64 (2.74.6-1) ... Setting up libgenometools0-dev (1.6.2+ds-3) ... Setting up libcairo2-dev:arm64 (1.16.0-7) ... Processing triggers for libc-bin (2.36-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... usrmerge is already the newest version (35). fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/20592/tmp/hooks/A99_set_merged_usr starting Re-configuring usrmerge... I: user script /srv/workspace/pbuilder/20592/tmp/hooks/A99_set_merged_usr finished hostname: Temporary failure in name resolution I: Running cd /build/aegean-0.16.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../aegean_0.16.0+dfsg-2_source.changes dpkg-buildpackage: info: source package aegean dpkg-buildpackage: info: source version 0.16.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh_auto_clean make -j8 clean make[1]: Map '/build/aegean-0.16.0+dfsg' wordt binnengegaan rm -rf bin/parseval bin/canon-gff3 bin/locuspocus bin/gaeval bin/xtractore bin/pmrna bin/tidygff3 bin/unittests libaegean.a obj/AgnAttributeFilterStream.o obj/AgnCliquePair.o obj/AgnCompareReportHTML.o obj/AgnCompareReportText.o obj/AgnComparison.o obj/AgnFilterStream.o obj/AgnGaevalVisitor.o obj/AgnGeneStream.o obj/AgnInferCDSVisitor.o obj/AgnInferExonsVisitor.o obj/AgnInferParentStream.o obj/AgnLocus.o obj/AgnLocusFilterStream.o obj/AgnLocusMapVisitor.o obj/AgnLocusRefineStream.o obj/AgnLocusStream.o obj/AgnMrnaRepVisitor.o obj/AgnPseudogeneFixVisitor.o obj/AgnRemoveChildrenVisitor.o obj/AgnTranscriptClique.o obj/AgnTypecheck.o obj/AgnUnitTest.o obj/AgnUtils.o inc/core/AgnVersion.h bin/*.dSYM make[1]: Map '/build/aegean-0.16.0+dfsg' wordt verlaten dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Map '/build/aegean-0.16.0+dfsg' wordt binnengegaan dh_auto_build -- prefix=/build/aegean-0.16.0+dfsg/debian/tmp 64bit=yes errorcheck=no make -j8 "INSTALL=install --strip-program=true" prefix=/build/aegean-0.16.0\+dfsg/debian/tmp 64bit=yes errorcheck=no make[2]: Map '/build/aegean-0.16.0+dfsg' wordt binnengegaan [print inc/core/AgnVersion.h] [compile AgnAttributeFilterStream] [compile AgnCliquePair] [compile AgnCompareReportHTML] [compile AgnCompareReportText] [compile AgnComparison] [compile AgnFilterStream] [compile AgnGaevalVisitor] [compile AgnGeneStream] src/core/AgnCompareReportText.c: In function ‘compare_report_text_comp_class_summary’: src/core/AgnCompareReportText.c:287:3: warning: ‘__builtin___strncpy_chk’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 287 | strncpy(header + 4, label, strlen(label)); | ^ src/core/AgnCompareReportText.c:287:3: note: length computed here 287 | strncpy(header + 4, label, strlen(label)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [compile AgnInferCDSVisitor] src/core/AgnCompareReportText.c: In function ‘compare_report_text_summary_struc’: src/core/AgnCompareReportText.c:589:3: warning: ‘__builtin___strncpy_chk’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 589 | strncpy(buffer + 14, units, strlen(units)); | ^ src/core/AgnCompareReportText.c:589:3: note: length computed here 589 | strncpy(buffer + 14, units, strlen(units)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/AgnCompareReportText.c:599:3: warning: ‘__builtin___strncpy_chk’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 599 | strncpy(buffer + 15, units, strlen(units)); | ^ src/core/AgnCompareReportText.c:599:3: note: length computed here 599 | strncpy(buffer + 15, units, strlen(units)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [compile AgnInferExonsVisitor] [compile AgnInferParentStream] [compile AgnLocus] [compile AgnLocusFilterStream] [compile AgnLocusMapVisitor] [compile AgnLocusRefineStream] [compile AgnLocusStream] [compile AgnMrnaRepVisitor] [compile AgnPseudogeneFixVisitor] [compile AgnRemoveChildrenVisitor] [compile AgnTranscriptClique] [compile AgnTypecheck] [compile AgnUnitTest] [compile AgnUtils] [compile ParsEval] [compile CanonGFF3] [compile LocusPocus] [compile GAEVAL] [compile Xtractore] [compile bin/pmrna] [compile bin/tidygff3] [compile unit tests] [create libaegean] ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libaegean.a make[2]: Map '/build/aegean-0.16.0+dfsg' wordt verlaten make[1]: Map '/build/aegean-0.16.0+dfsg' wordt verlaten debian/rules override_dh_auto_test make[1]: Map '/build/aegean-0.16.0+dfsg' wordt binnengegaan dh_auto_test -- useshared=yes 64bit=yes testthreads=5 make -j8 test useshared=yes 64bit=yes testthreads=5 make[2]: Map '/build/aegean-0.16.0+dfsg' wordt binnengegaan AEGeAn Unit Tests AEGeAn::AgnAttributeFilterStream | SUCCESS | Pogonomyrmex barbatus (partial) | PASS AEGeAn::AgnPseudogeneFixVisitor | SUCCESS | Gene, no pseudo attribute | PASS | Gene, bogus pseudo attribute | PASS | Corrected pseudogene | PASS | Uncorrected pseudogene | PASS | iLocus with gene & pseudogene | PASS AEGeAn::AgnInferParentStream | SUCCESS | Test 1: basic | PASS | Test 2: 2 top-level | PASS | Test 3: 2 top-level, inferred parent | PASS | Test 4: multichild | PASS | Test 5: multichild, inferred parent | PASS AEGeAn::AgnMrnaRepVisitor | SUCCESS | TAIR10: test 1 | PASS AEGeAn::AgnRemoveChildrenVisitor | SUCCESS | Test 1: grape (Gaze) | PASS AEGeAn::AgnTranscriptClique | SUCCESS | simple check | PASS | two mRNAs | PASS | copy check | PASS AEGeAn::AgnCliquePair | SUCCESS | perfect match vs. self | PASS | CDS match | PASS | non-match | PASS AEGeAn::AgnLocus | SUCCESS | grape test 1 | PASS | grape test 2 | PASS | filter by CDS length | PASS | filter by exon number | PASS AEGeAn::AgnFilterStream | SUCCESS | mRNA | PASS | exon | PASS | CDS | PASS | intron | PASS | exon+intron | PASS | CDS+intron | PASS AEGeAn::AgnInferCDSVisitor | SUCCESS | grape test sans UTRs | PASS | grape test with UTRs, strand check | PASS | grape test 3 | PASS | grape test 4 | PASS AEGeAn::AgnInferExonsVisitor | SUCCESS | grape test sans UTRs | PASS | grape test with UTRs, strand check | PASS | grape test 3 | PASS | grape test 4 | PASS AEGeAn::AgnGeneStream | SUCCESS | 1 gene, 2 mRNAs | PASS | 1 gene, 2 mRNAs (one sans CDS) | PASS | mRNA only | PASS | mRNA boundaries | PASS AEGeAn::AgnLocusStream | SUCCESS | grape test (pairwise) | PASS | Pdom test (pairwise) | PASS | Amel test (Augustus) | PASS | Delta=200 | PASS AEGeAn::AgnLocusRefineStream | SUCCESS | Atta cephalotes (syndrome): coords | PASS | Atta cephalotes (syndrome): elen | PASS | Megachile rotundata CST: coords | PASS | Megachile rotundata CST: elen | PASS AEGeAn::AgnGaevalVisitor | SUCCESS | range intersect (1) | PASS | range intersect (2) | PASS | range intersect (3) | PASS | union (1) | PASS | union (2) | PASS | union (3) | PASS | intersect (1) | PASS | intersect (2) | PASS | intersect (3) | PASS | intersect (4) | PASS | intersect (5) | PASS | calculate coverage | PASS | introns confirmed (no gaps) | PASS | introns confirmed (gaps) | PASS | calculate integrity | PASS ===== Unit tests passed for all 15 classes! ===== AEGeAn Functional Tests GFF3 I/O: 'AT1G05320' | codons | PASS | sansexons | PASS | sansutrs | PASS | withprot | PASS GFF3 I/O: 'FBgn0035002' | codons | PASS | sansexons | PASS | sansutrs | PASS AEGeAn::LocusPocus | default | PASS | end skip | PASS | Apis mellifera plap | PASS | Apis mellifera plap (CDS) | PASS | Apis mellifera LSM | PASS | Megachile rotundata CST (intron) | PASS | iiLocus lengths (Amel OGS Group7.16) | PASS | Nasonia vitripennis (intron gene) | PASS | A. echinatior (intron gene + ncRNA) | PASS AEGeAn::Xtractore | major royal jelly | PASS AEGeAn::CanonGFF3 | A. mellifera gene multitrans | PASS AEGeAn::GAEVAL | sans CDS | PASS | Pdom | PASS AEGeAn::ParsEval | Amel Group7.16 (text) | PASS | Amel Group7.16 (delta=500) | PASS | Amel Group7.16 (HTML) | PASS AEGeAn::align-convert.py | GAEVAL example1 | PASS | GAEVAL example5 | PASS AEGeAn::pmrna | A. mellifera Shal | PASS | A. mellifera dock | PASS | A. mellifera pseudo | PASS AEGeAn::tidygff3 | A. dorsata exception | PASS make[2]: Map '/build/aegean-0.16.0+dfsg' wordt verlaten make[1]: Map '/build/aegean-0.16.0+dfsg' wordt verlaten create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Map '/build/aegean-0.16.0+dfsg' wordt binnengegaan dh_auto_install -- 64bit=yes prefix=/build/aegean-0.16.0+dfsg/debian/tmp make -j8 install DESTDIR=/build/aegean-0.16.0\+dfsg/debian/aegean AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" 64bit=yes prefix=/build/aegean-0.16.0\+dfsg/debian/tmp make[2]: Map '/build/aegean-0.16.0+dfsg' wordt binnengegaan cp bin/parseval bin/canon-gff3 bin/locuspocus bin/gaeval bin/xtractore bin/pmrna bin/tidygff3 /build/aegean-0.16.0+dfsg/debian/tmp/bin/. cp libaegean.a /build/aegean-0.16.0+dfsg/debian/tmp/lib/. cp inc/core/*.h /build/aegean-0.16.0+dfsg/debian/tmp/include/aegean/. cp -r data/share/* /build/aegean-0.16.0+dfsg/debian/tmp/share/aegean/. make[2]: Map '/build/aegean-0.16.0+dfsg' wordt verlaten make[1]: Map '/build/aegean-0.16.0+dfsg' wordt verlaten dh_install debian/rules override_dh_installdocs make[1]: Map '/build/aegean-0.16.0+dfsg' wordt binnengegaan cp /build/aegean-0.16.0+dfsg/README.md /build/aegean-0.16.0+dfsg/README dh_installdocs make[1]: Map '/build/aegean-0.16.0+dfsg' wordt verlaten dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_missing: warning: bin/canon-gff3 exists in debian/tmp but is not installed to anywhere (related file: "bin/canon-gff3") dh_missing: warning: bin/gaeval exists in debian/tmp but is not installed to anywhere (related file: "bin/gaeval") dh_missing: warning: bin/locuspocus exists in debian/tmp but is not installed to anywhere (related file: "bin/locuspocus") dh_missing: warning: bin/parseval exists in debian/tmp but is not installed to anywhere (related file: "bin/parseval") dh_missing: warning: bin/pmrna exists in debian/tmp but is not installed to anywhere (related file: "bin/pmrna") dh_missing: warning: bin/tidygff3 exists in debian/tmp but is not installed to anywhere (related file: "bin/tidygff3") dh_missing: warning: bin/xtractore exists in debian/tmp but is not installed to anywhere (related file: "bin/xtractore") dh_missing: warning: include/aegean/AgnAttributeFilterStream.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/AgnCliquePair.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/AgnCompareReportHTML.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/AgnCompareReportText.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/AgnComparison.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/AgnFilterStream.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/AgnGaevalVisitor.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/AgnGeneStream.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/AgnInferCDSVisitor.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/AgnInferExonsVisitor.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/AgnInferParentStream.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/AgnLocus.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/AgnLocusFilterStream.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/AgnLocusMapVisitor.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/AgnLocusRefineStream.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/AgnLocusStream.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/AgnMrnaRepVisitor.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/AgnPseudogeneFixVisitor.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/AgnRemoveChildrenVisitor.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/AgnTranscriptClique.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/AgnTypecheck.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/AgnUnitTest.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/AgnUtils.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/AgnVersion.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: include/aegean/aegean.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: lib/libaegean.a exists in debian/tmp but is not installed to anywhere While detecting missing files, dh_missing noted some files with a similar name to those that were missing. This warning /might/ be resolved by replacing references to the missing files with the similarly named ones that dh_missing found - assuming the content is identical. As an example, you might want to replace: * bin/canon-gff3 with: * bin/canon-gff3 in a file in debian/ or as argument to one of the dh_* tools called from debian/rules. (Note it is possible the paths are not used verbatim but instead directories containing or globs matching them are used instead) Alternatively, add the missing file to debian/not-installed if it cannot and should not be used. The following debhelper tools have reported what they installed (with files per package) * dh_install: aegean (8) * dh_installdocs: aegean (1) * dh_installman: aegean (7) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: pakket 'aegean' wordt gebouwd in '../aegean_0.16.0+dfsg-2_arm64.deb'. dpkg-deb: pakket 'aegean-dbgsym' wordt gebouwd in '../aegean-dbgsym_0.16.0+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../aegean_0.16.0+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../aegean_0.16.0+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/20592/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/20592/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/20592 and its subdirectories I: Current time: Sun May 12 09:49:42 +14 2024 I: pbuilder-time-stamp: 1715456982