I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 14 10:50:19 -12 2024 I: pbuilder-time-stamp: 1718405419 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [umap-learn_0.5.3+dfsg-2.dsc] I: copying [./umap-learn_0.5.3+dfsg.orig.tar.xz] I: copying [./umap-learn_0.5.3+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Feb 17 16:38:14 2023 -12 gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./umap-learn_0.5.3+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting umap-learn in umap-learn-0.5.3+dfsg dpkg-source: info: unpacking umap-learn_0.5.3+dfsg.orig.tar.xz dpkg-source: info: unpacking umap-learn_0.5.3+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying disable-and-fix-incompatible-tests.patch dpkg-source: info: applying skip_tests_needing_tensorflow.patch dpkg-source: info: applying a714b59bd9e2ca2e63312bc3491b2b037a42f2f2.patch dpkg-source: info: applying c7d05683325589ad432a55e109cacb9d631cfaa9.patch dpkg-source: info: applying 6c433a36e1811e5c6109ea3414e1916c2347955f.patch dpkg-source: info: applying 3ca4cf8620e25ceb8b4602648f4092d7a904a282.patch dpkg-source: info: applying fix_further_tests.patch dpkg-source: info: applying numpy_1.24.patch dpkg-source: info: applying 949abd082524fce8c45dfb147bcd8e8ef49eade3.patch dpkg-source: info: applying 588e1f724c9f5de528eb1500b0c85a1a609fe947.patch dpkg-source: info: applying fix-example.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3479620/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f30636ca771d4c5eb7111d0e28c127a4' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3479620' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JRhfYrVu/pbuilderrc_FYv6 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JRhfYrVu/b1 --logfile b1/build.log umap-learn_0.5.3+dfsg-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 2023 more -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/3479620/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-numpy, python3-scipy, python3-sklearn, python3-numba, python3-pynndescent, python3-tqdm, python3-pytest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-sklearn; however: Package python3-sklearn is not installed. pbuilder-satisfydepends-dummy depends on python3-numba; however: Package python3-numba is not installed. pbuilder-satisfydepends-dummy depends on python3-pynndescent; however: Package python3-pynndescent is not installed. pbuilder-satisfydepends-dummy depends on python3-tqdm; however: Package python3-tqdm is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libcurl3-nss{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} libldap-2.5-0{a} libllvm14{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libnspr4{a} libnss3{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libpfm4{a} libpipeline1{a} libproc2-0{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} libxsimd-dev{a} libz3-4{a} llvm-14{a} llvm-14-linker-tools{a} llvm-14-runtime{a} m4{a} man-db{a} media-types{a} nss-plugin-pem{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-beniget{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-gast{a} python3-iniconfig{a} python3-joblib{a} python3-lib2to3{a} python3-llvmlite{a} python3-minimal{a} python3-more-itertools{a} python3-numba{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-ply{a} python3-py{a} python3-pynndescent{a} python3-pytest{a} python3-pythran{a} python3-scipy{a} python3-setuptools{a} python3-sklearn{a} python3-sklearn-lib{a} python3-threadpoolctl{a} python3-tqdm{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: binfmt-support ca-certificates curl javascript-common libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules llvm-14-dev lynx numba-doc psmisc publicsuffix python3-matplotlib python3-nose python3-pil python3-pip python3-psutil python3-pygments python3-simplejson systemd wget 0 packages upgraded, 114 newly installed, 0 to remove and 0 not upgraded. Need to get 134 MB of archives. After unpacking 737 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-20 [9510 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libnspr4 amd64 2:4.35-1 [113 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libnss3 amd64 2:3.87.1-1 [1331 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 nss-plugin-pem amd64 1.0.8+1-1 [54.6 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 libcurl3-nss amd64 7.88.1-9 [389 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 libopenblas0-pthread amd64 0.3.21+ds-4 [6709 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [28.9 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 libz3-4 amd64 4.8.12-3.1 [7216 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 libllvm14 amd64 1:14.0.6-12 [21.8 MB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 libopenblas0 amd64 0.3.21+ds-4 [32.6 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 libopenblas-pthread-dev amd64 0.3.21+ds-4 [4971 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libopenblas-dev amd64 0.3.21+ds-4 [44.9 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libpfm4 amd64 4.13.0-1 [294 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get: 83 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 llvm-14-runtime amd64 1:14.0.6-12 [477 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 llvm-14-linker-tools amd64 1:14.0.6-12 [1288 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 llvm-14 amd64 1:14.0.6-12 [11.7 MB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get: 88 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get: 91 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get: 93 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get: 94 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 96 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 python3-joblib all 1.2.0-4 [211 kB] Get: 98 http://deb.debian.org/debian bookworm/main amd64 python3-llvmlite amd64 0.39.1-2 [139 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 100 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.10.1-2 [15.2 MB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 python3-numba amd64 0.56.4+dfsg-2 [1695 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 python3-py all 1.11.0-1 [89.2 kB] Get: 108 http://deb.debian.org/debian bookworm/main amd64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 109 http://deb.debian.org/debian bookworm/main amd64 python3-sklearn-lib amd64 1.2.1+dfsg-1 [2567 kB] Get: 110 http://deb.debian.org/debian bookworm/main amd64 python3-sklearn all 1.2.1+dfsg-1 [2103 kB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 python3-pynndescent amd64 0.5.8-2 [42.6 kB] Get: 112 http://deb.debian.org/debian bookworm/main amd64 python3-pytest all 7.2.1-2 [236 kB] Get: 113 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Get: 114 http://deb.debian.org/debian bookworm/main amd64 python3-tqdm all 4.64.1-1 [97.7 kB] Fetched 134 MB in 20s (6656 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. 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Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20346 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../001-libproc2-0_2%3a4.0.2-3_amd64.deb ... 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Preparing to unpack .../044-libnghttp2-14_1.52.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.52.0-1) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../045-libnspr4_2%3a4.35-1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.35-1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../046-libnss3_2%3a3.87.1-1_amd64.deb ... Unpacking libnss3:amd64 (2:3.87.1-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../047-libpsl5_0.21.2-1_amd64.deb ... Unpacking libpsl5:amd64 (0.21.2-1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../048-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../049-libssh2-1_1.10.0-3+b1_amd64.deb ... Unpacking libssh2-1:amd64 (1.10.0-3+b1) ... 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Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (22.2.0-1) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-joblib (1.2.0-4) ... Setting up python3.11-dev (3.11.2-6) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-ply (3.11-5) ... Setting up python3-tqdm (4.64.1-1) ... Setting up python3-threadpoolctl (3.1.0-1) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-beniget (0.4.1-3) ... Setting up libpython3-all-dev:amd64 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-sklearn-lib:amd64 (1.2.1+dfsg-1) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-scipy (1.10.1-2) ... Setting up python3-numba (0.56.4+dfsg-2) ... update-alternatives: using /usr/share/python3-numba/numba to provide /usr/bin/numba (numba) in auto mode Setting up python3-sklearn (1.2.1+dfsg-1) ... Setting up python3-pynndescent (0.5.8-2) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/umap-learn-0.5.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../umap-learn_0.5.3+dfsg-2_source.changes dpkg-buildpackage: info: source package umap-learn dpkg-buildpackage: info: source version 0.5.3+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build/umap copying umap/utils.py -> /build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build/umap copying umap/umap_.py -> /build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build/umap copying umap/validation.py -> /build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build/umap copying umap/spectral.py -> /build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build/umap copying umap/sparse.py -> /build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build/umap copying umap/plot.py -> /build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build/umap copying umap/parametric_umap.py -> /build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build/umap copying umap/layouts.py -> /build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build/umap copying umap/distances.py -> /build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build/umap copying umap/aligned_umap.py -> /build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build/umap copying umap/__init__.py -> /build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build/umap debian/rules override_dh_auto_test make[1]: Entering directory '/build/umap-learn-0.5.3+dfsg' dh_auto_test -- --system=custom --test-args="PYTHONPATH={build_dir} {interpreter} -m pytest" I: pybuild base:240: PYTHONPATH=/build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build python3.11 -m pytest ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack rootdir: /build/umap-learn-0.5.3+dfsg collected 199 items umap/tests/test_aligned_umap.py ... [ 1%] umap/tests/test_chunked_parallel_spatial_metric.py sssssssssssssssssssss [ 12%] sssssssssssssssssssss [ 22%] umap/tests/test_composite_models.py .s.. [ 24%] umap/tests/test_densmap.py .s.. [ 26%] umap/tests/test_parametric_umap.py sssssss [ 30%] umap/tests/test_plot.py s [ 30%] umap/tests/test_umap_metrics.py ....................................s... [ 50%] .. [ 51%] umap/tests/test_umap_nn.py ..sssssss.. [ 57%] umap/tests/test_umap_on_iris.py ........... [ 62%] umap/tests/test_umap_ops.py ................... [ 72%] umap/tests/test_umap_repeated_data.py ......... [ 76%] umap/tests/test_umap_trustworthiness.py .......... [ 81%] umap/tests/test_umap_validation_params.py .............................. [ 96%] ...... [100%] =============================== warnings summary =============================== ../../usr/lib/python3/dist-packages/llvmlite/binding/ffi.py:159 /usr/lib/python3/dist-packages/llvmlite/binding/ffi.py:159: DeprecationWarning: path is deprecated. Use files() instead. Refer to https://importlib-resources.readthedocs.io/en/latest/using.html#migrating-from-legacy for migration advice. _lib_handle = importlib.resources.path(pkgname, _lib_name) umap/tests/test_chunked_parallel_spatial_metric.py:234 /build/umap-learn-0.5.3+dfsg/umap/tests/test_chunked_parallel_spatial_metric.py:234: PytestUnknownMarkWarning: Unknown pytest.mark.benchmark - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.benchmark( umap/tests/test_chunked_parallel_spatial_metric.py:258 /build/umap-learn-0.5.3+dfsg/umap/tests/test_chunked_parallel_spatial_metric.py:258: PytestUnknownMarkWarning: Unknown pytest.mark.benchmark - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.benchmark( umap/tests/test_chunked_parallel_spatial_metric.py:288 /build/umap-learn-0.5.3+dfsg/umap/tests/test_chunked_parallel_spatial_metric.py:288: PytestUnknownMarkWarning: Unknown pytest.mark.benchmark - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.benchmark( umap/tests/test_chunked_parallel_spatial_metric.py:312 /build/umap-learn-0.5.3+dfsg/umap/tests/test_chunked_parallel_spatial_metric.py:312: PytestUnknownMarkWarning: Unknown pytest.mark.benchmark - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.benchmark( umap/plot.py:20 /build/umap-learn-0.5.3+dfsg/umap/plot.py:20: UserWarning: The umap.plot package requires extra plotting libraries to be installed. You can install these via pip using pip install umap-learn[plot] or via conda using conda install pandas matplotlib datashader bokeh holoviews colorcet scikit-image warn( umap/tests/test_aligned_umap.py::test_local_clustering umap/tests/test_aligned_umap.py::test_local_clustering umap/tests/test_umap_on_iris.py::test_umap_clusterability_on_supervised_iris umap/tests/test_umap_ops.py::test_blobs_cluster umap/tests/test_umap_ops.py::test_multi_component_layout umap/tests/test_umap_ops.py::test_multi_component_layout_precomputed /usr/lib/python3/dist-packages/sklearn/cluster/_kmeans.py:870: FutureWarning: The default value of `n_init` will change from 10 to 'auto' in 1.4. Set the value of `n_init` explicitly to suppress the warning warnings.warn( umap/tests/test_aligned_umap.py::test_aligned_update /build/umap-learn-0.5.3+dfsg/umap/aligned_umap.py:188: NumbaTypeSafetyWarning: unsafe cast from int64 to int32. Precision may be lost. if i in relation_dict: umap/tests/test_umap_on_iris.py::test_precomputed_transform_on_iris umap/tests/test_umap_on_iris.py::test_precomputed_sparse_transform_on_iris umap/tests/test_umap_ops.py::test_multi_component_layout_precomputed umap/tests/test_umap_ops.py::test_disconnected_data_precomputed[True-1] umap/tests/test_umap_ops.py::test_disconnected_data_precomputed[False-1] umap/tests/test_umap_trustworthiness.py::test_sparse_precomputed_metric_umap_trustworthiness umap/tests/test_umap_validation_params.py::test_umap_update_bad_params /build/umap-learn-0.5.3+dfsg/umap/umap_.py:1780: UserWarning: using precomputed metric; inverse_transform will be unavailable warn("using precomputed metric; inverse_transform will be unavailable") umap/tests/test_umap_on_iris.py::test_precomputed_transform_on_iris umap/tests/test_umap_on_iris.py::test_precomputed_sparse_transform_on_iris /build/umap-learn-0.5.3+dfsg/umap/umap_.py:2830: UserWarning: Transforming new data with precomputed metric. We are assuming the input data is a matrix of distances from the new points to the points in the training set. If the input matrix is sparse, it should contain distances from the new points to their nearest neighbours or approximate nearest neighbours in the training set. warn( umap/tests/test_umap_ops.py::test_multi_component_layout umap/tests/test_umap_ops.py::test_multi_component_layout_precomputed /usr/lib/python3/dist-packages/sklearn/manifold/_spectral_embedding.py:274: UserWarning: Graph is not fully connected, spectral embedding may not work as expected. warnings.warn( umap/tests/test_umap_ops.py::test_disconnected_data[True-jaccard-1] umap/tests/test_umap_ops.py::test_disconnected_data[True-jaccard-5] umap/tests/test_umap_ops.py::test_disconnected_data[True-hellinger-1] umap/tests/test_umap_ops.py::test_disconnected_data[True-hellinger-5] umap/tests/test_umap_ops.py::test_disconnected_data[False-jaccard-1] umap/tests/test_umap_ops.py::test_disconnected_data[False-jaccard-5] umap/tests/test_umap_ops.py::test_disconnected_data[False-hellinger-1] umap/tests/test_umap_ops.py::test_disconnected_data[False-hellinger-5] /usr/lib/python3/dist-packages/_pytest/python.py:195: PytestRemovedIn8Warning: Passing None has been deprecated. See https://docs.pytest.org/en/latest/how-to/capture-warnings.html#additional-use-cases-of-warnings-in-tests for alternatives in common use cases. result = testfunction(**testargs) umap/tests/test_umap_ops.py::test_disconnected_data_precomputed[True-1] /build/umap-learn-0.5.3+dfsg/umap/umap_.py:125: UserWarning: A few of your vertices were disconnected from the manifold. This shouldn't cause problems. Disconnection_distance = 1 has removed 3 edges. It has only fully disconnected 1 vertices. Use umap.utils.disconnected_vertices() to identify them. warn( umap/tests/test_umap_ops.py::test_disconnected_data_precomputed[False-1] /build/umap-learn-0.5.3+dfsg/umap/umap_.py:125: UserWarning: A few of your vertices were disconnected from the manifold. This shouldn't cause problems. Disconnection_distance = 1 has removed 38 edges. It has only fully disconnected 1 vertices. Use umap.utils.disconnected_vertices() to identify them. warn( umap/tests/test_umap_repeated_data.py::test_repeated_points_large_n umap/tests/test_umap_validation_params.py::test_umap_too_many_neighbors_warns umap/tests/test_umap_validation_params.py::test_umap_inverse_transform_fails_expectedly /build/umap-learn-0.5.3+dfsg/umap/umap_.py:2344: UserWarning: n_neighbors is larger than the dataset size; truncating to X.shape[0] - 1 warn( umap/tests/test_umap_validation_params.py::test_umap_inverse_transform_fails_expectedly /build/umap-learn-0.5.3+dfsg/umap/umap_.py:1802: UserWarning: gradient function is not yet implemented for dice distance metric; inverse_transform will be unavailable warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ========== 139 passed, 60 skipped, 38 warnings in 2981.37s (0:49:41) =========== make[1]: Leaving directory '/build/umap-learn-0.5.3+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/umap-learn/ -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/umap-learn-0.5.3+dfsg/debian/umap-learn running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running install_lib creating /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr creating /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib creating /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11 creating /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages creating /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap copying /build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build/umap/__init__.py -> /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap copying /build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build/umap/aligned_umap.py -> /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap copying /build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build/umap/distances.py -> /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap copying /build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build/umap/layouts.py -> /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap copying /build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build/umap/parametric_umap.py -> /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap copying /build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build/umap/plot.py -> /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap copying /build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build/umap/sparse.py -> /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap copying /build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build/umap/spectral.py -> /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap copying /build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build/umap/validation.py -> /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap copying /build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build/umap/umap_.py -> /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap copying /build/umap-learn-0.5.3+dfsg/.pybuild/cpython3_3.11/build/umap/utils.py -> /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap byte-compiling /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap/__init__.py to __init__.cpython-311.pyc byte-compiling /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap/aligned_umap.py to aligned_umap.cpython-311.pyc byte-compiling /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap/distances.py to distances.cpython-311.pyc byte-compiling /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap/layouts.py to layouts.cpython-311.pyc byte-compiling /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap/parametric_umap.py to parametric_umap.cpython-311.pyc byte-compiling /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap/plot.py to plot.cpython-311.pyc byte-compiling /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap/sparse.py to sparse.cpython-311.pyc byte-compiling /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap/spectral.py to spectral.cpython-311.pyc byte-compiling /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap/validation.py to validation.cpython-311.pyc byte-compiling /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap/umap_.py to umap_.cpython-311.pyc byte-compiling /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap/utils.py to utils.cpython-311.pyc running install_egg_info running egg_info creating umap_learn.egg-info writing umap_learn.egg-info/PKG-INFO writing dependency_links to umap_learn.egg-info/dependency_links.txt writing requirements to umap_learn.egg-info/requires.txt writing top-level names to umap_learn.egg-info/top_level.txt writing manifest file 'umap_learn.egg-info/SOURCES.txt' reading manifest file 'umap_learn.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' writing manifest file 'umap_learn.egg-info/SOURCES.txt' Copying umap_learn.egg-info to /build/umap-learn-0.5.3+dfsg/debian/umap-learn/usr/lib/python3.11/dist-packages/umap_learn-0.5.3.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installexamples make[1]: Entering directory '/build/umap-learn-0.5.3+dfsg' dh_installexamples for exa in `grep -l '/usr/bin/env python' debian/*/usr/share/doc/*/examples/*.py`; do sed -i 's#/usr/bin/env python#/usr/bin/python3#' ${exa} ; done make[1]: Leaving directory '/build/umap-learn-0.5.3+dfsg' dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'umap-learn' in '../umap-learn_0.5.3+dfsg-2_all.deb'. dpkg-genbuildinfo --build=binary -O../umap-learn_0.5.3+dfsg-2_amd64.buildinfo dpkg-genchanges --build=binary -O../umap-learn_0.5.3+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3479620 and its subdirectories I: Current time: Fri Jun 14 11:48:16 -12 2024 I: pbuilder-time-stamp: 1718408896