I: pbuilder: network access will be disabled during build
I: Current time: Mon May  1 10:17:54 +14 2023
I: pbuilder-time-stamp: 1682885874
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [tigr-glimmer_3.02b-6.dsc]
I: copying [./tigr-glimmer_3.02b.orig.tar.gz]
I: copying [./tigr-glimmer_3.02b-6.debian.tar.xz]
I: Extracting source
gpgv: Signature made Sun Oct 17 08:40:48 2021 +14
gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv:                issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./tigr-glimmer_3.02b-6.dsc: no acceptable signature found
dpkg-source: info: extracting tigr-glimmer in tigr-glimmer-3.02b
dpkg-source: info: unpacking tigr-glimmer_3.02b.orig.tar.gz
dpkg-source: info: unpacking tigr-glimmer_3.02b-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 10_gcc4.3.patch
dpkg-source: info: applying mayhem.patch
dpkg-source: info: applying make-errs.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/337250/tmp/hooks/D01_modify_environment starting
debug: Running on ionos1-amd64.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 May  1 10:18 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/337250/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/337250/tmp/hooks/D02_print_environment starting
I: set
  BASH=/bin/sh
  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
  BASH_ALIASES=()
  BASH_ARGC=()
  BASH_ARGV=()
  BASH_CMDS=()
  BASH_LINENO=([0]="12" [1]="0")
  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
  BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu")
  BASH_VERSION='5.2.15(1)-release'
  BUILDDIR=/build
  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
  BUILDUSERNAME=pbuilder2
  BUILD_ARCH=amd64
  DEBIAN_FRONTEND=noninteractive
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15'
  DIRSTACK=()
  DISTRIBUTION=bookworm
  EUID=0
  FUNCNAME=([0]="Echo" [1]="main")
  GROUPS=()
  HOME=/root
  HOSTNAME=i-capture-the-hostname
  HOSTTYPE=x86_64
  HOST_ARCH=amd64
  IFS=' 	
  '
  INVOCATION_ID=52fc8a8dbb704d36856255ae8c06754f
  LANG=C
  LANGUAGE=et_EE:et
  LC_ALL=C
  MACHTYPE=x86_64-pc-linux-gnu
  MAIL=/var/mail/root
  OPTERR=1
  OPTIND=1
  OSTYPE=linux-gnu
  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
  PBCURRENTCOMMANDLINEOPERATION=build
  PBUILDER_OPERATION=build
  PBUILDER_PKGDATADIR=/usr/share/pbuilder
  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
  PBUILDER_SYSCONFDIR=/etc
  PIPESTATUS=([0]="0")
  POSIXLY_CORRECT=y
  PPID=337250
  PS4='+ '
  PWD=/
  SHELL=/bin/bash
  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
  SHLVL=3
  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.llWvRk8y/pbuilderrc_PsAj --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.llWvRk8y/b2 --logfile b2/build.log --extrapackages usrmerge tigr-glimmer_3.02b-6.dsc'
  SUDO_GID=110
  SUDO_UID=105
  SUDO_USER=jenkins
  TERM=unknown
  TZ=/usr/share/zoneinfo/Etc/GMT-14
  UID=0
  USER=root
  _='I: set'
  http_proxy=http://78.137.99.97:3128
I: uname -a
  Linux i-capture-the-hostname 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux
I: ls -l /bin
  total 5632
  -rwxr-xr-x 1 root root 1265648 Apr 24 11:23 bash
  -rwxr-xr-x 3 root root   39224 Sep 19  2022 bunzip2
  -rwxr-xr-x 3 root root   39224 Sep 19  2022 bzcat
  lrwxrwxrwx 1 root root       6 Sep 19  2022 bzcmp -> bzdiff
  -rwxr-xr-x 1 root root    2225 Sep 19  2022 bzdiff
  lrwxrwxrwx 1 root root       6 Sep 19  2022 bzegrep -> bzgrep
  -rwxr-xr-x 1 root root    4893 Nov 28  2021 bzexe
  lrwxrwxrwx 1 root root       6 Sep 19  2022 bzfgrep -> bzgrep
  -rwxr-xr-x 1 root root    3775 Sep 19  2022 bzgrep
  -rwxr-xr-x 3 root root   39224 Sep 19  2022 bzip2
  -rwxr-xr-x 1 root root   14568 Sep 19  2022 bzip2recover
  lrwxrwxrwx 1 root root       6 Sep 19  2022 bzless -> bzmore
  -rwxr-xr-x 1 root root    1297 Sep 19  2022 bzmore
  -rwxr-xr-x 1 root root   44016 Sep 21  2022 cat
  -rwxr-xr-x 1 root root   68656 Sep 21  2022 chgrp
  -rwxr-xr-x 1 root root   64496 Sep 21  2022 chmod
  -rwxr-xr-x 1 root root   72752 Sep 21  2022 chown
  -rwxr-xr-x 1 root root  151152 Sep 21  2022 cp
  -rwxr-xr-x 1 root root  125640 Jan  6 03:20 dash
  -rwxr-xr-x 1 root root  121904 Sep 21  2022 date
  -rwxr-xr-x 1 root root   89240 Sep 21  2022 dd
  -rwxr-xr-x 1 root root  102200 Sep 21  2022 df
  -rwxr-xr-x 1 root root  151344 Sep 21  2022 dir
  -rwxr-xr-x 1 root root   88656 Mar 24 00:02 dmesg
  lrwxrwxrwx 1 root root       8 Dec 20 03:33 dnsdomainname -> hostname
  lrwxrwxrwx 1 root root       8 Dec 20 03:33 domainname -> hostname
  -rwxr-xr-x 1 root root   43856 Sep 21  2022 echo
  -rwxr-xr-x 1 root root      41 Jan 25 04:43 egrep
  -rwxr-xr-x 1 root root   35664 Sep 21  2022 false
  -rwxr-xr-x 1 root root      41 Jan 25 04:43 fgrep
  -rwxr-xr-x 1 root root   85600 Mar 24 00:02 findmnt
  -rwsr-xr-x 1 root root   35128 Mar 23 22:35 fusermount
  -rwxr-xr-x 1 root root  203152 Jan 25 04:43 grep
  -rwxr-xr-x 2 root root    2346 Apr 10  2022 gunzip
  -rwxr-xr-x 1 root root    6447 Apr 10  2022 gzexe
  -rwxr-xr-x 1 root root   98136 Apr 10  2022 gzip
  -rwxr-xr-x 1 root root   22680 Dec 20 03:33 hostname
  -rwxr-xr-x 1 root root   72824 Sep 21  2022 ln
  -rwxr-xr-x 1 root root   53024 Mar 24 02:40 login
  -rwxr-xr-x 1 root root  151344 Sep 21  2022 ls
  -rwxr-xr-x 1 root root  207168 Mar 24 00:02 lsblk
  -rwxr-xr-x 1 root root   97552 Sep 21  2022 mkdir
  -rwxr-xr-x 1 root root   72912 Sep 21  2022 mknod
  -rwxr-xr-x 1 root root   43952 Sep 21  2022 mktemp
  -rwxr-xr-x 1 root root   59712 Mar 24 00:02 more
  -rwsr-xr-x 1 root root   59704 Mar 24 00:02 mount
  -rwxr-xr-x 1 root root   18744 Mar 24 00:02 mountpoint
  -rwxr-xr-x 1 root root  142968 Sep 21  2022 mv
  lrwxrwxrwx 1 root root       8 Dec 20 03:33 nisdomainname -> hostname
  lrwxrwxrwx 1 root root      14 Apr  3 20:25 pidof -> /sbin/killall5
  -rwxr-xr-x 1 root root   43952 Sep 21  2022 pwd
  lrwxrwxrwx 1 root root       4 Apr 24 11:23 rbash -> bash
  -rwxr-xr-x 1 root root   52112 Sep 21  2022 readlink
  -rwxr-xr-x 1 root root   72752 Sep 21  2022 rm
  -rwxr-xr-x 1 root root   56240 Sep 21  2022 rmdir
  -rwxr-xr-x 1 root root   27560 Nov  3 06:31 run-parts
  -rwxr-xr-x 1 root root  126424 Jan  6 09:55 sed
  lrwxrwxrwx 1 root root       9 May  1 10:18 sh -> /bin/bash
  -rwxr-xr-x 1 root root   43888 Sep 21  2022 sleep
  -rwxr-xr-x 1 root root   85008 Sep 21  2022 stty
  -rwsr-xr-x 1 root root   72000 Mar 24 00:02 su
  -rwxr-xr-x 1 root root   39824 Sep 21  2022 sync
  -rwxr-xr-x 1 root root  531984 Apr  7 04:25 tar
  -rwxr-xr-x 1 root root   14520 Nov  3 06:31 tempfile
  -rwxr-xr-x 1 root root  109616 Sep 21  2022 touch
  -rwxr-xr-x 1 root root   35664 Sep 21  2022 true
  -rwxr-xr-x 1 root root   14568 Mar 23 22:35 ulockmgr_server
  -rwsr-xr-x 1 root root   35128 Mar 24 00:02 umount
  -rwxr-xr-x 1 root root   43888 Sep 21  2022 uname
  -rwxr-xr-x 2 root root    2346 Apr 10  2022 uncompress
  -rwxr-xr-x 1 root root  151344 Sep 21  2022 vdir
  -rwxr-xr-x 1 root root   72024 Mar 24 00:02 wdctl
  lrwxrwxrwx 1 root root       8 Dec 20 03:33 ypdomainname -> hostname
  -rwxr-xr-x 1 root root    1984 Apr 10  2022 zcat
  -rwxr-xr-x 1 root root    1678 Apr 10  2022 zcmp
  -rwxr-xr-x 1 root root    6460 Apr 10  2022 zdiff
  -rwxr-xr-x 1 root root      29 Apr 10  2022 zegrep
  -rwxr-xr-x 1 root root      29 Apr 10  2022 zfgrep
  -rwxr-xr-x 1 root root    2081 Apr 10  2022 zforce
  -rwxr-xr-x 1 root root    8103 Apr 10  2022 zgrep
  -rwxr-xr-x 1 root root    2206 Apr 10  2022 zless
  -rwxr-xr-x 1 root root    1842 Apr 10  2022 zmore
  -rwxr-xr-x 1 root root    4577 Apr 10  2022 znew
I: user script /srv/workspace/pbuilder/337250/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13)
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19596 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} 
The following packages are RECOMMENDED but will NOT be installed:
  curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 
0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded.
Need to get 18.7 MB of archives. After unpacking 72.4 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 2 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB]
Get: 3 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB]
Get: 4 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB]
Get: 5 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB]
Get: 6 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get: 7 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB]
Get: 8 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB]
Get: 9 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB]
Get: 10 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB]
Get: 11 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB]
Get: 12 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB]
Get: 13 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get: 15 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB]
Get: 16 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 17 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB]
Get: 18 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B]
Get: 21 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 22 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 23 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB]
Get: 24 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB]
Get: 25 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB]
Get: 26 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB]
Get: 27 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB]
Get: 28 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB]
Fetched 18.7 MB in 1s (34.2 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sensible-utils.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19596 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_amd64.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:amd64.
Preparing to unpack .../02-libmagic1_1%3a5.44-3_amd64.deb ...
Unpacking libmagic1:amd64 (1:5.44-3) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.44-3_amd64.deb ...
Unpacking file (1:5.44-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../04-gettext-base_0.21-12_amd64.deb ...
Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../05-libuchardet0_0.0.7-1_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../06-groff-base_1.22.4-10_amd64.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_amd64.deb ...
Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../08-libpipeline1_1.5.7-1_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../09-man-db_2.11.2-2_amd64.deb ...
Unpacking man-db (2.11.2-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../10-m4_1.4.19-3_amd64.deb ...
Unpacking m4 (1.4.19-3) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../11-autoconf_2.71-3_all.deb ...
Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../14-autopoint_0.21-12_all.deb ...
Unpacking autopoint (0.21-12) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ...
Unpacking libdebhelper-perl (13.11.4) ...
Selecting previously unselected package libtool.
Preparing to unpack .../16-libtool_2.4.7-5_all.deb ...
Unpacking libtool (2.4.7-5) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../17-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ...
Unpacking libsub-override-perl (0.09-4) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.13.1-1) ...
Selecting previously unselected package libelf1:amd64.
Preparing to unpack .../22-libelf1_0.188-2.1_amd64.deb ...
Unpacking libelf1:amd64 (0.188-2.1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../23-dwz_0.15-1_amd64.deb ...
Unpacking dwz (0.15-1) ...
Selecting previously unselected package libicu72:amd64.
Preparing to unpack .../24-libicu72_72.1-3_amd64.deb ...
Unpacking libicu72:amd64 (72.1-3) ...
Selecting previously unselected package libxml2:amd64.
Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.2_amd64.deb ...
Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../26-gettext_0.21-12_amd64.deb ...
Unpacking gettext (0.21-12) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../29-debhelper_13.11.4_all.deb ...
Unpacking debhelper (13.11.4) ...
Setting up libpipeline1:amd64 (1.5.7-1) ...
Setting up libicu72:amd64 (72.1-3) ...
Setting up bsdextrautils (2.38.1-5+b1) ...
Setting up libmagic-mgc (1:5.44-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.11.4) ...
Setting up libmagic1:amd64 (1:5.44-3) ...
Setting up gettext-base (0.21-12) ...
Setting up m4 (1.4.19-3) ...
Setting up file (1:5.44-3) ...
Setting up autotools-dev (20220109.1) ...
Setting up autopoint (0.21-12) ...
Setting up autoconf (2.71-3) ...
Setting up sensible-utils (0.0.17+nmu1) ...
Setting up libuchardet0:amd64 (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libelf1:amd64 (0.188-2.1) ...
Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up gettext (0.21-12) ...
Setting up libtool (2.4.7-5) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-10) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.11.4) ...
Processing triggers for libc-bin (2.36-9) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
usrmerge is already the newest version (35).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: user script /srv/workspace/pbuilder/337250/tmp/hooks/A99_set_merged_usr starting
Re-configuring usrmerge...
removed '/etc/unsupported-skip-usrmerge-conversion'
The system has been successfully converted.
I: user script /srv/workspace/pbuilder/337250/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/tigr-glimmer-3.02b/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../tigr-glimmer_3.02b-6_source.changes
dpkg-buildpackage: info: source package tigr-glimmer
dpkg-buildpackage: info: source version 3.02b-6
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean
   debian/rules override_dh_clean
make[1]: Entering directory '/build/tigr-glimmer-3.02b'
dh_clean 
cd src; make clean
make[2]: Entering directory '/build/tigr-glimmer-3.02b/src'
cd /build/tigr-glimmer-3.02b/obj; rm -f   
cd /build/tigr-glimmer-3.02b/lib; rm -f  
cd /build/tigr-glimmer-3.02b/bin; rm -f 
rm -f   
echo "* Make Target is " clean;
* Make Target is  clean
set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "#####    Making Directory " `pwd` " " clean " #####"; make clean; cd ..; fi; done;
#####    Making Directory  /build/tigr-glimmer-3.02b/src/Common   clean  #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Common'
if [ -e gene.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc gene.cc \
    | sed '\''s/gene\\.o[ :]*/& gene.d/g'\'' > gene.d' ; \
        fi ;
if [ -e fasta.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc fasta.cc \
    | sed '\''s/fasta\\.o[ :]*/& fasta.d/g'\'' > fasta.d' ; \
        fi ;
if [ -e delcher.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc delcher.cc \
    | sed '\''s/delcher\\.o[ :]*/& delcher.d/g'\'' > delcher.d' ; \
        fi ;
cd /build/tigr-glimmer-3.02b/obj; rm -f   delcher.o  fasta.o  gene.o 
cd /build/tigr-glimmer-3.02b/lib; rm -f libGLMcommon.a 
cd /build/tigr-glimmer-3.02b/bin; rm -f 
rm -f   delcher.d  fasta.d  gene.d 
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Common'
#####    Making Directory  /build/tigr-glimmer-3.02b/src/ICM   clean  #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/ICM'
if [ -e score-fixed.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc score-fixed.cc \
    | sed '\''s/score-fixed\\.o[ :]*/& score-fixed.d/g'\'' > score-fixed.d' ; \
        fi ;
if [ -e build-fixed.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc build-fixed.cc \
    | sed '\''s/build-fixed\\.o[ :]*/& build-fixed.d/g'\'' > build-fixed.d' ; \
        fi ;
if [ -e build-icm.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc build-icm.cc \
    | sed '\''s/build-icm\\.o[ :]*/& build-icm.d/g'\'' > build-icm.d' ; \
        fi ;
if [ -e icm.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc icm.cc \
    | sed '\''s/icm\\.o[ :]*/& icm.d/g'\'' > icm.d' ; \
        fi ;
cd /build/tigr-glimmer-3.02b/obj; rm -f   icm.o  build-icm.o  build-fixed.o  score-fixed.o 
cd /build/tigr-glimmer-3.02b/lib; rm -f libGLMicm.a 
cd /build/tigr-glimmer-3.02b/bin; rm -f build-icm build-fixed score-fixed
rm -f   icm.d  build-icm.d  build-fixed.d  score-fixed.d 
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/ICM'
#####    Making Directory  /build/tigr-glimmer-3.02b/src/Glimmer   clean  #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Glimmer'
if [ -e test.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc test.cc \
    | sed '\''s/test\\.o[ :]*/& test.d/g'\'' > test.d' ; \
        fi ;
if [ -e long-orfs.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc long-orfs.cc \
    | sed '\''s/long-orfs\\.o[ :]*/& long-orfs.d/g'\'' > long-orfs.d' ; \
        fi ;
if [ -e glimmer3.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc glimmer3.cc \
    | sed '\''s/glimmer3\\.o[ :]*/& glimmer3.d/g'\'' > glimmer3.d' ; \
        fi ;
if [ -e anomaly.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc anomaly.cc \
    | sed '\''s/anomaly\\.o[ :]*/& anomaly.d/g'\'' > anomaly.d' ; \
        fi ;
cd /build/tigr-glimmer-3.02b/obj; rm -f   anomaly.o  glimmer3.o  long-orfs.o  test.o 
cd /build/tigr-glimmer-3.02b/lib; rm -f  
cd /build/tigr-glimmer-3.02b/bin; rm -f anomaly glimmer3 long-orfs test
rm -f   anomaly.d  glimmer3.d  long-orfs.d  test.d 
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Glimmer'
#####    Making Directory  /build/tigr-glimmer-3.02b/src/Util   clean  #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Util'
if [ -e window-acgt.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc window-acgt.cc \
    | sed '\''s/window-acgt\\.o[ :]*/& window-acgt.d/g'\'' > window-acgt.d' ; \
        fi ;
if [ -e uncovered.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc uncovered.cc \
    | sed '\''s/uncovered\\.o[ :]*/& uncovered.d/g'\'' > uncovered.d' ; \
        fi ;
if [ -e start-codon-distrib.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc start-codon-distrib.cc \
    | sed '\''s/start-codon-distrib\\.o[ :]*/& start-codon-distrib.d/g'\'' > start-codon-distrib.d' ; \
        fi ;
if [ -e multi-extract.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc multi-extract.cc \
    | sed '\''s/multi-extract\\.o[ :]*/& multi-extract.d/g'\'' > multi-extract.d' ; \
        fi ;
if [ -e extract.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc extract.cc \
    | sed '\''s/extract\\.o[ :]*/& extract.d/g'\'' > extract.d' ; \
        fi ;
if [ -e entropy-score.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc entropy-score.cc \
    | sed '\''s/entropy-score\\.o[ :]*/& entropy-score.d/g'\'' > entropy-score.d' ; \
        fi ;
if [ -e entropy-profile.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc entropy-profile.cc \
    | sed '\''s/entropy-profile\\.o[ :]*/& entropy-profile.d/g'\'' > entropy-profile.d' ; \
        fi ;
cd /build/tigr-glimmer-3.02b/obj; rm -f   entropy-profile.o  entropy-score.o  extract.o  multi-extract.o  start-codon-distrib.o  uncovered.o  window-acgt.o 
cd /build/tigr-glimmer-3.02b/lib; rm -f  
cd /build/tigr-glimmer-3.02b/bin; rm -f entropy-profile entropy-score extract multi-extract start-codon-distrib uncovered window-acgt
rm -f   entropy-profile.d  entropy-score.d  extract.d  multi-extract.d  start-codon-distrib.d  uncovered.d  window-acgt.d 
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Util'
make[2]: Leaving directory '/build/tigr-glimmer-3.02b/src'
rm -f bin/* lib/* obj/*
make[1]: Leaving directory '/build/tigr-glimmer-3.02b'
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
   debian/rules override_dh_auto_build
make[1]: Entering directory '/build/tigr-glimmer-3.02b'
dh_auto_build --sourcedirectory=src -- CFLAGS="-g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now"
	cd src && make -j15 "INSTALL=install --strip-program=true" "CFLAGS=-g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security" "CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2" "CXXFLAGS=-g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security" "LDFLAGS=-Wl,-z,relro -Wl,-z,now"
make[2]: Entering directory '/build/tigr-glimmer-3.02b/src'
TGT=objs
echo "* Make Target is " all;
* Make Target is  all
set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "#####    Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done;
#####    Making Directory  /build/tigr-glimmer-3.02b/src/Common   all  #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Common'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
if [ -e gene.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc gene.cc \
    | sed '\''s/gene\\.o[ :]*/& gene.d/g'\'' > gene.d' ; \
        fi ;
if [ -e fasta.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc fasta.cc \
    | sed '\''s/fasta\\.o[ :]*/& fasta.d/g'\'' > fasta.d' ; \
        fi ;
if [ -e delcher.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc delcher.cc \
    | sed '\''s/delcher\\.o[ :]*/& delcher.d/g'\'' > delcher.d' ; \
        fi ;
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
@@@@@@@@@@@@@@@@@@@  delcher.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e delcher.cc ] ; then \
  g++ -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
	 -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/delcher.o delcher.cc ; \
else \
  /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
            " :/build/tigr-glimmer-3.02b/obj" delcher.o ; \
fi ;
@@@@@@@@@@@@@@@@@@@  fasta.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e fasta.cc ] ; then \
  g++ -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
	 -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/fasta.o fasta.cc ; \
else \
  /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
            " :/build/tigr-glimmer-3.02b/obj" fasta.o ; \
fi ;
@@@@@@@@@@@@@@@@@@@  gene.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e gene.cc ] ; then \
  g++ -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
	 -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/gene.o gene.cc ; \
else \
  /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
            " :/build/tigr-glimmer-3.02b/obj" gene.o ; \
fi ;
gene.cc: In member function 'bool PWM_t::Read(FILE*)':
gene.cc:319:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
  319 |    fscanf (fp, "%d", & width);
      |    ~~~~~~~^~~~~~~~~~~~~~~~~~~
gene.cc:332:14: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
  332 |       fscanf (fp, "%s", tag);   // skip tag in first column
      |       ~~~~~~~^~~~~~~~~~~~~~~
gene.cc:335:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
  335 |          fscanf (fp, "%lf", & x);
      |          ~~~~~~~^~~~~~~~~~~~~~~~
gene.cc: In function 'int Read_String(FILE*, char*&, long int&, char*, int)':
gene.cc:848:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  848 |    fgets (Line, MAX_LINE, fp);
      |    ~~~~~~^~~~~~~~~~~~~~~~~~~~
###################  libGLMcommon.a #####################
cd /build/tigr-glimmer-3.02b/obj && \
  ar rvs /build/tigr-glimmer-3.02b/lib/libGLMcommon.a delcher.o fasta.o gene.o 
ar: creating /build/tigr-glimmer-3.02b/lib/libGLMcommon.a
a - delcher.o
a - fasta.o
a - gene.o
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Common'
#####    Making Directory  /build/tigr-glimmer-3.02b/src/ICM   all  #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/ICM'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
if [ -e score-fixed.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc score-fixed.cc \
    | sed '\''s/score-fixed\\.o[ :]*/& score-fixed.d/g'\'' > score-fixed.d' ; \
        fi ;
if [ -e build-fixed.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc build-fixed.cc \
    | sed '\''s/build-fixed\\.o[ :]*/& build-fixed.d/g'\'' > build-fixed.d' ; \
        fi ;
if [ -e build-icm.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc build-icm.cc \
    | sed '\''s/build-icm\\.o[ :]*/& build-icm.d/g'\'' > build-icm.d' ; \
        fi ;
if [ -e icm.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc icm.cc \
    | sed '\''s/icm\\.o[ :]*/& icm.d/g'\'' > icm.d' ; \
        fi ;
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
@@@@@@@@@@@@@@@@@@@  icm.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e icm.cc ] ; then \
  g++ -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
	 -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/icm.o icm.cc ; \
else \
  /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
            " :/build/tigr-glimmer-3.02b/obj" icm.o ; \
fi ;
icm.cc: In member function 'void Fixed_Length_ICM_t::read(const char*)':
icm.cc:1491:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1491 |    fread (line, sizeof (char), ID_STRING_LEN, fp);    // skip the text header line
      |    ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
icm.cc:1519:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1519 |    fread (permutation, sizeof (int), length, fp);
      |    ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@@@@@@@@@@@@@@@@@@  build-icm.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e build-icm.cc ] ; then \
  g++ -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
	 -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/build-icm.o build-icm.cc ; \
else \
  /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
            " :/build/tigr-glimmer-3.02b/obj" build-icm.o ; \
fi ;
@@@@@@@@@@@@@@@@@@@  build-fixed.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e build-fixed.cc ] ; then \
  g++ -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
	 -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/build-fixed.o build-fixed.cc ; \
else \
  /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
            " :/build/tigr-glimmer-3.02b/obj" build-fixed.o ; \
fi ;
@@@@@@@@@@@@@@@@@@@  score-fixed.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e score-fixed.cc ] ; then \
  g++ -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
	 -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/score-fixed.o score-fixed.cc ; \
else \
  /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
            " :/build/tigr-glimmer-3.02b/obj" score-fixed.o ; \
fi ;
###################  libGLMicm.a #####################
cd /build/tigr-glimmer-3.02b/obj && \
  ar rvs /build/tigr-glimmer-3.02b/lib/libGLMicm.a icm.o build-icm.o build-fixed.o score-fixed.o 
ar: creating /build/tigr-glimmer-3.02b/lib/libGLMicm.a
a - icm.o
a - build-icm.o
a - build-fixed.o
a - score-fixed.o
++++++++++++++++++++  build-icm ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "build-icm.o" ] ; then \
  cd /build/tigr-glimmer-3.02b/obj; \
    cc -o /build/tigr-glimmer-3.02b/bin/build-icm -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib build-icm.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     -lGLMicm \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/build-icm; \
      exit ${STATUS}; \
    fi; \
else \
  cd /build/tigr-glimmer-3.02b/obj; \
    g++ -o /build/tigr-glimmer-3.02b/bin/build-icm -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib build-icm.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     -lGLMicm \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/build-icm; \
      exit ${STATUS}; \
    fi; \
fi ;
++++++++++++++++++++  build-fixed ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "build-fixed.o" ] ; then \
  cd /build/tigr-glimmer-3.02b/obj; \
    cc -o /build/tigr-glimmer-3.02b/bin/build-fixed -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib build-fixed.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     -lGLMicm \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/build-fixed; \
      exit ${STATUS}; \
    fi; \
else \
  cd /build/tigr-glimmer-3.02b/obj; \
    g++ -o /build/tigr-glimmer-3.02b/bin/build-fixed -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib build-fixed.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     -lGLMicm \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/build-fixed; \
      exit ${STATUS}; \
    fi; \
fi ;
++++++++++++++++++++  score-fixed ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "score-fixed.o" ] ; then \
  cd /build/tigr-glimmer-3.02b/obj; \
    cc -o /build/tigr-glimmer-3.02b/bin/score-fixed -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib score-fixed.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     -lGLMicm \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/score-fixed; \
      exit ${STATUS}; \
    fi; \
else \
  cd /build/tigr-glimmer-3.02b/obj; \
    g++ -o /build/tigr-glimmer-3.02b/bin/score-fixed -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib score-fixed.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     -lGLMicm \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/score-fixed; \
      exit ${STATUS}; \
    fi; \
fi ;
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/ICM'
#####    Making Directory  /build/tigr-glimmer-3.02b/src/Glimmer   all  #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Glimmer'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
if [ -e test.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc test.cc \
    | sed '\''s/test\\.o[ :]*/& test.d/g'\'' > test.d' ; \
        fi ;
if [ -e long-orfs.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc long-orfs.cc \
    | sed '\''s/long-orfs\\.o[ :]*/& long-orfs.d/g'\'' > long-orfs.d' ; \
        fi ;
if [ -e glimmer3.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc glimmer3.cc \
    | sed '\''s/glimmer3\\.o[ :]*/& glimmer3.d/g'\'' > glimmer3.d' ; \
        fi ;
if [ -e anomaly.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc anomaly.cc \
    | sed '\''s/anomaly\\.o[ :]*/& anomaly.d/g'\'' > anomaly.d' ; \
        fi ;
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
@@@@@@@@@@@@@@@@@@@  anomaly.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e anomaly.cc ] ; then \
  g++ -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
	 -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/anomaly.o anomaly.cc ; \
else \
  /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
            " :/build/tigr-glimmer-3.02b/obj" anomaly.o ; \
fi ;
@@@@@@@@@@@@@@@@@@@  glimmer3.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e glimmer3.cc ] ; then \
  g++ -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
	 -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/glimmer3.o glimmer3.cc ; \
else \
  /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
            " :/build/tigr-glimmer-3.02b/obj" glimmer3.o ; \
fi ;
glimmer3.cc: In function 'void Read_Entropy_Profiles(const char*, bool&)':
glimmer3.cc:2607:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 2607 |    fgets (line, MAX_LINE, fp);  // skip header line
      |    ~~~~~~^~~~~~~~~~~~~~~~~~~~
@@@@@@@@@@@@@@@@@@@  long-orfs.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e long-orfs.cc ] ; then \
  g++ -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
	 -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/long-orfs.o long-orfs.cc ; \
else \
  /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
            " :/build/tigr-glimmer-3.02b/obj" long-orfs.o ; \
fi ;
long-orfs.cc: In function 'void Read_Entropy_Profiles(const char*, bool&)':
long-orfs.cc:1317:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1317 |    fgets (line, MAX_LINE, fp);  // skip header line
      |    ~~~~~~^~~~~~~~~~~~~~~~~~~~
@@@@@@@@@@@@@@@@@@@  test.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e test.cc ] ; then \
  g++ -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
	 -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/test.o test.cc ; \
else \
  /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
            " :/build/tigr-glimmer-3.02b/obj" test.o ; \
fi ;
++++++++++++++++++++  anomaly ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "anomaly.o" ] ; then \
  cd /build/tigr-glimmer-3.02b/obj; \
    cc -o /build/tigr-glimmer-3.02b/bin/anomaly -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib anomaly.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/anomaly; \
      exit ${STATUS}; \
    fi; \
else \
  cd /build/tigr-glimmer-3.02b/obj; \
    g++ -o /build/tigr-glimmer-3.02b/bin/anomaly -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib anomaly.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/anomaly; \
      exit ${STATUS}; \
    fi; \
fi ;
++++++++++++++++++++  glimmer3 ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "glimmer3.o" ] ; then \
  cd /build/tigr-glimmer-3.02b/obj; \
    cc -o /build/tigr-glimmer-3.02b/bin/glimmer3 -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib glimmer3.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a /build/tigr-glimmer-3.02b/lib/libGLMicm.a \
     \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/glimmer3; \
      exit ${STATUS}; \
    fi; \
else \
  cd /build/tigr-glimmer-3.02b/obj; \
    g++ -o /build/tigr-glimmer-3.02b/bin/glimmer3 -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib glimmer3.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a /build/tigr-glimmer-3.02b/lib/libGLMicm.a \
     \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/glimmer3; \
      exit ${STATUS}; \
    fi; \
fi ;
++++++++++++++++++++  long-orfs ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "long-orfs.o" ] ; then \
  cd /build/tigr-glimmer-3.02b/obj; \
    cc -o /build/tigr-glimmer-3.02b/bin/long-orfs -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib long-orfs.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/long-orfs; \
      exit ${STATUS}; \
    fi; \
else \
  cd /build/tigr-glimmer-3.02b/obj; \
    g++ -o /build/tigr-glimmer-3.02b/bin/long-orfs -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib long-orfs.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/long-orfs; \
      exit ${STATUS}; \
    fi; \
fi ;
++++++++++++++++++++  test ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "test.o" ] ; then \
  cd /build/tigr-glimmer-3.02b/obj; \
    cc -o /build/tigr-glimmer-3.02b/bin/test -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib test.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/test; \
      exit ${STATUS}; \
    fi; \
else \
  cd /build/tigr-glimmer-3.02b/obj; \
    g++ -o /build/tigr-glimmer-3.02b/bin/test -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib test.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/test; \
      exit ${STATUS}; \
    fi; \
fi ;
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Glimmer'
#####    Making Directory  /build/tigr-glimmer-3.02b/src/Util   all  #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Util'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
if [ -e window-acgt.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc window-acgt.cc \
    | sed '\''s/window-acgt\\.o[ :]*/& window-acgt.d/g'\'' > window-acgt.d' ; \
        fi ;
if [ -e uncovered.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc uncovered.cc \
    | sed '\''s/uncovered\\.o[ :]*/& uncovered.d/g'\'' > uncovered.d' ; \
        fi ;
if [ -e start-codon-distrib.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc start-codon-distrib.cc \
    | sed '\''s/start-codon-distrib\\.o[ :]*/& start-codon-distrib.d/g'\'' > start-codon-distrib.d' ; \
        fi ;
if [ -e multi-extract.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc multi-extract.cc \
    | sed '\''s/multi-extract\\.o[ :]*/& multi-extract.d/g'\'' > multi-extract.d' ; \
        fi ;
if [ -e extract.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc extract.cc \
    | sed '\''s/extract\\.o[ :]*/& extract.d/g'\'' > extract.d' ; \
        fi ;
if [ -e entropy-score.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc entropy-score.cc \
    | sed '\''s/entropy-score\\.o[ :]*/& entropy-score.d/g'\'' > entropy-score.d' ; \
        fi ;
if [ -e entropy-profile.cc ] ; then \
  /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2  -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc entropy-profile.cc \
    | sed '\''s/entropy-profile\\.o[ :]*/& entropy-profile.d/g'\'' > entropy-profile.d' ; \
        fi ;
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
@@@@@@@@@@@@@@@@@@@  entropy-profile.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e entropy-profile.cc ] ; then \
  g++ -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
	 -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/entropy-profile.o entropy-profile.cc ; \
else \
  /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
            " :/build/tigr-glimmer-3.02b/obj" entropy-profile.o ; \
fi ;
@@@@@@@@@@@@@@@@@@@  entropy-score.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e entropy-score.cc ] ; then \
  g++ -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
	 -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/entropy-score.o entropy-score.cc ; \
else \
  /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
            " :/build/tigr-glimmer-3.02b/obj" entropy-score.o ; \
fi ;
entropy-score.cc: In function 'void Read_Entropy_Profiles(const char*, bool&)':
entropy-score.cc:327:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  327 |    fgets (line, MAX_LINE, fp);  // skip header line
      |    ~~~~~~^~~~~~~~~~~~~~~~~~~~
@@@@@@@@@@@@@@@@@@@  extract.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e extract.cc ] ; then \
  g++ -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
	 -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/extract.o extract.cc ; \
else \
  /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
            " :/build/tigr-glimmer-3.02b/obj" extract.o ; \
fi ;
@@@@@@@@@@@@@@@@@@@  multi-extract.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e multi-extract.cc ] ; then \
  g++ -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
	 -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/multi-extract.o multi-extract.cc ; \
else \
  /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
            " :/build/tigr-glimmer-3.02b/obj" multi-extract.o ; \
fi ;
@@@@@@@@@@@@@@@@@@@  start-codon-distrib.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e start-codon-distrib.cc ] ; then \
  g++ -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
	 -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/start-codon-distrib.o start-codon-distrib.cc ; \
else \
  /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
            " :/build/tigr-glimmer-3.02b/obj" start-codon-distrib.o ; \
fi ;
@@@@@@@@@@@@@@@@@@@  uncovered.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e uncovered.cc ] ; then \
  g++ -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
	 -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/uncovered.o uncovered.cc ; \
else \
  /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
            " :/build/tigr-glimmer-3.02b/obj" uncovered.o ; \
fi ;
@@@@@@@@@@@@@@@@@@@  window-acgt.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e window-acgt.cc ] ; then \
  g++ -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
	 -I/build/tigr-glimmer-3.02b/inc  -I/../SYS/inc  -I/build/tigr-glimmer-3.02b/src/Common  -I/build/tigr-glimmer-3.02b/src/ICM  -I/build/tigr-glimmer-3.02b/src/Glimmer  -I/build/tigr-glimmer-3.02b/src/Util  -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/window-acgt.o window-acgt.cc ; \
else \
  /cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
            " :/build/tigr-glimmer-3.02b/obj" window-acgt.o ; \
fi ;
++++++++++++++++++++  entropy-profile ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "entropy-profile.o" ] ; then \
  cd /build/tigr-glimmer-3.02b/obj; \
    cc -o /build/tigr-glimmer-3.02b/bin/entropy-profile -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib entropy-profile.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/entropy-profile; \
      exit ${STATUS}; \
    fi; \
else \
  cd /build/tigr-glimmer-3.02b/obj; \
    g++ -o /build/tigr-glimmer-3.02b/bin/entropy-profile -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib entropy-profile.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/entropy-profile; \
      exit ${STATUS}; \
    fi; \
fi ;
++++++++++++++++++++  entropy-score ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "entropy-score.o" ] ; then \
  cd /build/tigr-glimmer-3.02b/obj; \
    cc -o /build/tigr-glimmer-3.02b/bin/entropy-score -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib entropy-score.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/entropy-score; \
      exit ${STATUS}; \
    fi; \
else \
  cd /build/tigr-glimmer-3.02b/obj; \
    g++ -o /build/tigr-glimmer-3.02b/bin/entropy-score -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib entropy-score.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/entropy-score; \
      exit ${STATUS}; \
    fi; \
fi ;
++++++++++++++++++++  extract ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "extract.o" ] ; then \
  cd /build/tigr-glimmer-3.02b/obj; \
    cc -o /build/tigr-glimmer-3.02b/bin/extract -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib extract.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/extract; \
      exit ${STATUS}; \
    fi; \
else \
  cd /build/tigr-glimmer-3.02b/obj; \
    g++ -o /build/tigr-glimmer-3.02b/bin/extract -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib extract.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/extract; \
      exit ${STATUS}; \
    fi; \
fi ;
++++++++++++++++++++  multi-extract ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "multi-extract.o" ] ; then \
  cd /build/tigr-glimmer-3.02b/obj; \
    cc -o /build/tigr-glimmer-3.02b/bin/multi-extract -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib multi-extract.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/multi-extract; \
      exit ${STATUS}; \
    fi; \
else \
  cd /build/tigr-glimmer-3.02b/obj; \
    g++ -o /build/tigr-glimmer-3.02b/bin/multi-extract -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib multi-extract.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/multi-extract; \
      exit ${STATUS}; \
    fi; \
fi ;
++++++++++++++++++++  start-codon-distrib ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "start-codon-distrib.o" ] ; then \
  cd /build/tigr-glimmer-3.02b/obj; \
    cc -o /build/tigr-glimmer-3.02b/bin/start-codon-distrib -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib start-codon-distrib.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/start-codon-distrib; \
      exit ${STATUS}; \
    fi; \
else \
  cd /build/tigr-glimmer-3.02b/obj; \
    g++ -o /build/tigr-glimmer-3.02b/bin/start-codon-distrib -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib start-codon-distrib.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/start-codon-distrib; \
      exit ${STATUS}; \
    fi; \
fi ;
++++++++++++++++++++  uncovered ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "uncovered.o" ] ; then \
  cd /build/tigr-glimmer-3.02b/obj; \
    cc -o /build/tigr-glimmer-3.02b/bin/uncovered -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib uncovered.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/uncovered; \
      exit ${STATUS}; \
    fi; \
else \
  cd /build/tigr-glimmer-3.02b/obj; \
    g++ -o /build/tigr-glimmer-3.02b/bin/uncovered -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib uncovered.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/uncovered; \
      exit ${STATUS}; \
    fi; \
fi ;
++++++++++++++++++++  window-acgt ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "window-acgt.o" ] ; then \
  cd /build/tigr-glimmer-3.02b/obj; \
    cc -o /build/tigr-glimmer-3.02b/bin/window-acgt -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib window-acgt.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/window-acgt; \
      exit ${STATUS}; \
    fi; \
else \
  cd /build/tigr-glimmer-3.02b/obj; \
    g++ -o /build/tigr-glimmer-3.02b/bin/window-acgt -Wl,-z,relro -Wl,-z,now \
     -L/build/tigr-glimmer-3.02b/lib  -L/build/tigr-glimmer-3.02b/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib window-acgt.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
     \
    || STATUS=${?} ; \
    if [ ${STATUS} != 0 ] ; then \
      rm -f /build/tigr-glimmer-3.02b/bin/window-acgt; \
      exit ${STATUS}; \
    fi; \
fi ;
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Util'
TGT=libs
echo "* Make Target is " all;
* Make Target is  all
set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "#####    Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done;
#####    Making Directory  /build/tigr-glimmer-3.02b/src/Common   all  #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Common'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Common'
#####    Making Directory  /build/tigr-glimmer-3.02b/src/ICM   all  #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/ICM'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/ICM'
#####    Making Directory  /build/tigr-glimmer-3.02b/src/Glimmer   all  #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Glimmer'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Glimmer'
#####    Making Directory  /build/tigr-glimmer-3.02b/src/Util   all  #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Util'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Util'
TGT=progs
echo "* Make Target is " all;
* Make Target is  all
set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "#####    Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done;
#####    Making Directory  /build/tigr-glimmer-3.02b/src/Common   all  #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Common'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Common'
#####    Making Directory  /build/tigr-glimmer-3.02b/src/ICM   all  #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/ICM'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/ICM'
#####    Making Directory  /build/tigr-glimmer-3.02b/src/Glimmer   all  #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Glimmer'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Glimmer'
#####    Making Directory  /build/tigr-glimmer-3.02b/src/Util   all  #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Util'
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Util'
make[2]: Leaving directory '/build/tigr-glimmer-3.02b/src'
make[1]: Leaving directory '/build/tigr-glimmer-3.02b'
   create-stamp debian/debhelper-build-stamp
   dh_prep
   dh_auto_install --destdir=debian/tigr-glimmer/
   dh_install
   dh_installdocs
   dh_installchangelogs
   dh_installexamples
   dh_installman
   dh_perl
   dh_link
   dh_strip_nondeterminism
   dh_compress
   dh_fixperms
   dh_missing
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
   dh_installdeb
   dh_gencontrol
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'tigr-glimmer-dbgsym' in '../tigr-glimmer-dbgsym_3.02b-6_amd64.deb'.
dpkg-deb: building package 'tigr-glimmer' in '../tigr-glimmer_3.02b-6_amd64.deb'.
 dpkg-genbuildinfo --build=binary -O../tigr-glimmer_3.02b-6_amd64.buildinfo
 dpkg-genchanges --build=binary -O../tigr-glimmer_3.02b-6_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/337250/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/337250/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/337250 and its subdirectories
I: Current time: Mon May  1 10:20:59 +14 2023
I: pbuilder-time-stamp: 1682886059