I: pbuilder: network access will be disabled during build I: Current time: Mon Jun 24 13:43:55 +14 2024 I: pbuilder-time-stamp: 1719186235 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [racon_1.5.0-3.dsc] I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-3.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Sep 30 02:45:21 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-3.dsc: no acceptable signature found dpkg-source: info: extracting racon in racon-1.5.0 dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz dpkg-source: info: unpacking racon_1.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1252620/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 24 13:44 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1252620/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1252620/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.15(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DIRSTACK=() DISTRIBUTION=bookworm EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=091c65a98de64a0dbaeda0fb1761f2b7 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1252620 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wVYrFACe/pbuilderrc_JYcL --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wVYrFACe/b2 --logfile b2/build.log --extrapackages usrmerge racon_1.5.0-3.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 24 2023 bash -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp -rwxr-xr-x 1 root root 125640 Jan 6 2023 dash -rwxr-xr-x 1 root root 121904 Sep 21 2022 date -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd -rwxr-xr-x 1 root root 102200 Sep 21 2022 df -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir -rwxr-xr-x 1 root root 88656 Mar 24 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 21 2022 false -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 24 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 25 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 20 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln -rwxr-xr-x 1 root root 53024 Mar 24 2023 login -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls -rwxr-xr-x 1 root root 207168 Mar 24 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 24 2023 more -rwsr-xr-x 1 root root 59704 Mar 24 2023 mount -rwxr-xr-x 1 root root 18744 Mar 24 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd lrwxrwxrwx 1 root root 4 Apr 24 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 3 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 6 2023 sed lrwxrwxrwx 1 root root 9 Jun 24 13:44 sh -> /bin/bash -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty -rwsr-xr-x 1 root root 72000 Mar 24 2023 su -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync -rwxr-xr-x 1 root root 531984 Apr 7 2023 tar -rwxr-xr-x 1 root root 14520 Nov 3 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch -rwxr-xr-x 1 root root 35664 Sep 21 2022 true -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 24 2023 umount -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 24 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/1252620/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev (>= 1.2.7-3~); however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcurl4{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgtest-dev{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1{a} libsub-override-perl{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 61 newly installed, 0 to remove and 0 not upgraded. Need to get 34.5 MB of archives. After unpacking 129 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libarchive13 amd64 3.6.2-1 [343 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-9 [386 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 librhash0 amd64 1.4.3-3 [134 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libuv1 amd64 1.44.2-1 [140 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 cmake-data all 3.25.1-1 [2026 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 cmake amd64 3.25.1-1 [8692 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 googletest all 1.12.1-0.2 [506 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libbiosoup-dev all 0.10.0-4 [7784 B] Get: 51 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libbioparser-dev all 3.0.15-3 [9032 B] Get: 53 http://deb.debian.org/debian bookworm/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.1 [97.7 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libcereal-dev amd64 1.3.2+dfsg-4 [221 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libedlib1 amd64 1.2.7-4+b1 [17.8 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libedlib-dev amd64 1.2.7-4+b1 [22.6 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libgtest-dev amd64 1.12.1-0.2 [240 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libspoa7.0.0 amd64 4.0.8-1 [68.4 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 libspoa-dev amd64 4.0.8-1 [9356 B] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libthread-pool-dev amd64 4.0.0-1 [7240 B] Get: 61 http://deb.debian.org/debian bookworm/main amd64 rampler amd64 2.1.1-1 [21.2 kB] Fetched 34.5 MB in 1s (46.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.2-3_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.2-3_amd64.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../04-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. 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I: Building the package I: user script /srv/workspace/pbuilder/1252620/tmp/hooks/A99_set_merged_usr starting Re-configuring usrmerge... removed '/etc/unsupported-skip-usrmerge-conversion' The system has been successfully converted. I: user script /srv/workspace/pbuilder/1252620/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/racon-1.5.0' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The CXX compiler identification is GNU 12.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done -- 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CMakeFiles/racon_test.dir/test/racon_test.cpp.o /usr/bin/c++ -DTEST_DATA=\"/build/racon-1.5.0/test/data/\" -I/build/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -DGTEST_HAS_PTHREAD=1 -std=c++11 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/racon-1.5.0/test/racon_test.cpp [ 80%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o /usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/racon-1.5.0/src/main.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz make[3]: Leaving directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' [ 90%] Built target racon_exe [100%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_test.dir/test/racon_test.cpp.o -o bin/racon_test lib/libracon.a -ledlib -lspoa -pthread -lz /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[3]: Leaving directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' [100%] Built target racon_test make[2]: Leaving directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/racon-1.5.0' cd test && ../obj-*/bin/racon_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (7 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (10 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (12 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (19 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (24 ms) [----------] 5 tests from RaconInitializeTest (74 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.000886 s [racon::Polisher::initialize] loaded sequences 0.068690 s [racon::Polisher::initialize] loaded overlaps 0.000596 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.145101 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.193079 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.225076 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.265093 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.297098 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.305083 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.329119 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.374008 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.390035 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.421151 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.453097 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.501092 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.573101 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.589111 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.629090 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.653076 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.693082 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.693124 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.709097 s [racon::Polisher::initialize] aligning overlaps [====================] 0.721115 s [racon::Polisher::initialize] transformed data into windows 0.003011 s [racon::Polisher::polish] generating consensus [=> ] 0.080903 s [racon::Polisher::polish] generating consensus [==> ] 0.148912 s [racon::Polisher::polish] generating consensus [===> ] 0.204862 s [racon::Polisher::polish] generating consensus [====> ] 0.252892 s [racon::Polisher::polish] generating consensus [=====> ] 0.284841 s [racon::Polisher::polish] generating consensus [======> ] 0.316860 s [racon::Polisher::polish] generating consensus [=======> ] 0.348825 s [racon::Polisher::polish] generating consensus [========> ] 0.396905 s [racon::Polisher::polish] generating consensus [=========> ] 0.428845 s [racon::Polisher::polish] generating consensus [==========> ] 0.484850 s [racon::Polisher::polish] generating consensus [===========> ] 0.580856 s [racon::Polisher::polish] generating consensus [============> ] 0.676968 s [racon::Polisher::polish] generating consensus [=============> ] 0.828874 s [racon::Polisher::polish] generating consensus [==============> ] 0.972866 s [racon::Polisher::polish] generating consensus [===============> ] 0.980852 s [racon::Polisher::polish] generating consensus [================> ] 1.060844 s [racon::Polisher::polish] generating consensus [=================> ] 1.140856 s [racon::Polisher::polish] generating consensus [==================> ] 1.140922 s [racon::Polisher::polish] generating consensus [===================>] 1.180851 s [racon::Polisher::polish] generating consensus [====================] 1.182203 s [racon::Polisher::] total = 2.016976 s [ OK ] RaconPolishingTest.ConsensusWithQualities (2045 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.000675 s [racon::Polisher::initialize] loaded sequences 0.041913 s [racon::Polisher::initialize] loaded overlaps 0.000422 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.062109 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.094073 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.130082 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.162086 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.194099 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.226067 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.314094 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.354101 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.378075 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.410091 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.450077 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.458073 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.466082 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.482085 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.530081 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.570076 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.570118 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.578066 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.578105 s [racon::Polisher::initialize] aligning overlaps [====================] 0.594125 s [racon::Polisher::initialize] transformed data into windows 0.000710 s [racon::Polisher::polish] generating consensus [=> ] 0.091170 s [racon::Polisher::polish] generating consensus [==> ] 0.171189 s [racon::Polisher::polish] generating consensus [===> ] 0.263191 s [racon::Polisher::polish] generating consensus [====> ] 0.335208 s [racon::Polisher::polish] generating consensus [=====> ] 0.383134 s [racon::Polisher::polish] generating consensus [======> ] 0.419129 s [racon::Polisher::polish] generating consensus [=======> ] 0.467122 s [racon::Polisher::polish] generating consensus [========> ] 0.515169 s [racon::Polisher::polish] generating consensus [=========> ] 0.575149 s [racon::Polisher::polish] generating consensus [==========> ] 0.655137 s [racon::Polisher::polish] generating consensus [===========> ] 0.779114 s [racon::Polisher::polish] generating consensus [============> ] 0.879138 s [racon::Polisher::polish] generating consensus [=============> ] 1.007175 s [racon::Polisher::polish] generating consensus [==============> ] 1.183135 s [racon::Polisher::polish] generating consensus [===============> ] 1.331139 s [racon::Polisher::polish] generating consensus [================> ] 1.475187 s [racon::Polisher::polish] generating consensus [=================> ] 1.483145 s [racon::Polisher::polish] generating consensus [==================> ] 1.483511 s [racon::Polisher::polish] generating consensus [===================>] 1.571180 s [racon::Polisher::polish] generating consensus [====================] 1.620289 s [racon::Polisher::] total = 2.290907 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (2315 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.000654 s [racon::Polisher::initialize] loaded sequences 0.099450 s [racon::Polisher::initialize] loaded overlaps 0.063351 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.013473 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.013501 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.013514 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.013526 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.013538 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.013551 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.013561 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.013572 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.013583 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.013595 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.013606 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.013618 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.013629 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.013641 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.013654 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.013678 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.013691 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.013705 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.013718 s [racon::Polisher::initialize] aligning overlaps [====================] 0.013731 s [racon::Polisher::initialize] transformed data into windows 0.002912 s [racon::Polisher::polish] generating consensus [=> ] 0.102513 s [racon::Polisher::polish] generating consensus [==> ] 0.154509 s [racon::Polisher::polish] generating consensus [===> ] 0.218493 s [racon::Polisher::polish] generating consensus [====> ] 0.266522 s [racon::Polisher::polish] generating consensus [=====> ] 0.298476 s [racon::Polisher::polish] generating consensus [======> ] 0.326490 s [racon::Polisher::polish] generating consensus [=======> ] 0.358502 s [racon::Polisher::polish] generating consensus [========> ] 0.378545 s [racon::Polisher::polish] generating consensus [=========> ] 0.422504 s [racon::Polisher::polish] generating consensus [==========> ] 0.490471 s [racon::Polisher::polish] generating consensus [===========> ] 0.574476 s [racon::Polisher::polish] generating consensus [============> ] 0.658463 s [racon::Polisher::polish] generating consensus [=============> ] 0.798459 s [racon::Polisher::polish] generating consensus [==============> ] 0.894470 s [racon::Polisher::polish] generating consensus [===============> ] 0.978486 s [racon::Polisher::polish] generating consensus [================> ] 1.038549 s [racon::Polisher::polish] generating consensus [=================> ] 1.058502 s [racon::Polisher::polish] generating consensus [==================> ] 1.058568 s [racon::Polisher::polish] generating consensus [===================>] 1.070504 s [racon::Polisher::polish] generating consensus [====================] 1.115480 s [racon::Polisher::] total = 1.315603 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (1338 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.000628 s [racon::Polisher::initialize] loaded sequences 0.042924 s [racon::Polisher::initialize] loaded overlaps 0.038277 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.015077 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.015112 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.015125 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.015138 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.015150 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.015162 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.015174 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.015187 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.015202 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.015214 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.015228 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.015241 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.015254 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.015267 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.015294 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.015307 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.015320 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.015332 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.015346 s [racon::Polisher::initialize] aligning overlaps [====================] 0.015359 s [racon::Polisher::initialize] transformed data into windows 0.000743 s [racon::Polisher::polish] generating consensus [=> ] 0.090945 s [racon::Polisher::polish] generating consensus [==> ] 0.170950 s [racon::Polisher::polish] generating consensus [===> ] 0.250867 s [racon::Polisher::polish] generating consensus [====> ] 0.314924 s [racon::Polisher::polish] generating consensus [=====> ] 0.362879 s [racon::Polisher::polish] generating consensus [======> ] 0.398887 s [racon::Polisher::polish] generating consensus [=======> ] 0.446899 s [racon::Polisher::polish] generating consensus [========> ] 0.494938 s [racon::Polisher::polish] generating consensus [=========> ] 0.554872 s [racon::Polisher::polish] generating consensus [==========> ] 0.638912 s [racon::Polisher::polish] generating consensus [===========> ] 0.730892 s [racon::Polisher::polish] generating consensus [============> ] 0.862888 s [racon::Polisher::polish] generating consensus [=============> ] 1.042898 s [racon::Polisher::polish] generating consensus [==============> ] 1.234881 s [racon::Polisher::polish] generating consensus [===============> ] 1.354881 s [racon::Polisher::polish] generating consensus [================> ] 1.371034 s [racon::Polisher::polish] generating consensus [=================> ] 1.482869 s [racon::Polisher::polish] generating consensus [==================> ] 1.482916 s [racon::Polisher::polish] generating consensus [===================>] 1.482939 s [racon::Polisher::polish] generating consensus [====================] 1.539575 s [racon::Polisher::] total = 1.662616 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (1671 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.000778 s [racon::Polisher::initialize] loaded sequences 0.098165 s [racon::Polisher::initialize] loaded overlaps 0.000418 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.121614 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.165609 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.193611 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.233608 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.253607 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.269599 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.321613 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.361587 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.369608 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.397604 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.433596 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.465607 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.497590 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.513605 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.534148 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.553594 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.590323 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.617595 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.617627 s [racon::Polisher::initialize] aligning overlaps [====================] 0.621603 s [racon::Polisher::initialize] transformed data into windows 0.002566 s [racon::Polisher::polish] generating consensus [=> ] 0.309383 s [racon::Polisher::polish] generating consensus [==> ] 0.309433 s [racon::Polisher::polish] generating consensus [===> ] 0.589393 s [racon::Polisher::polish] generating consensus [====> ] 0.589479 s [racon::Polisher::polish] generating consensus [=====> ] 0.733389 s [racon::Polisher::polish] generating consensus [======> ] 0.733454 s [racon::Polisher::polish] generating consensus [=======> ] 0.861334 s [racon::Polisher::polish] generating consensus [========> ] 0.861421 s [racon::Polisher::polish] generating consensus [=========> ] 1.053370 s [racon::Polisher::polish] generating consensus [==========> ] 1.053421 s [racon::Polisher::polish] generating consensus [===========> ] 1.405363 s [racon::Polisher::polish] generating consensus [============> ] 1.433365 s [racon::Polisher::polish] generating consensus [=============> ] 2.089387 s [racon::Polisher::polish] generating consensus [==============> ] 2.089438 s [racon::Polisher::polish] generating consensus [===============> ] 2.501378 s [racon::Polisher::polish] generating consensus [================> ] 2.501504 s [racon::Polisher::polish] generating consensus [=================> ] 2.525384 s [racon::Polisher::polish] generating consensus [==================> ] 2.525451 s [racon::Polisher::polish] generating consensus [===================>] 2.569332 s [racon::Polisher::polish] generating consensus [====================] 2.773439 s [racon::Polisher::] total = 3.531723 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (3541 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.000626 s [racon::Polisher::initialize] loaded sequences 0.097245 s [racon::Polisher::initialize] loaded overlaps 0.000403 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.085078 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.105088 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.137059 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.173078 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.201066 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.220952 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.265083 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.313067 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.329076 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.361072 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.385089 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.441075 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.465097 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.497099 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.541076 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.573098 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.597104 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.601076 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.617082 s [racon::Polisher::initialize] aligning overlaps [====================] 0.621086 s [racon::Polisher::initialize] transformed data into windows 0.002765 s [racon::Polisher::polish] generating consensus [=> ] 0.085174 s [racon::Polisher::polish] generating consensus [==> ] 0.157155 s [racon::Polisher::polish] generating consensus [===> ] 0.233103 s [racon::Polisher::polish] generating consensus [====> ] 0.261162 s [racon::Polisher::polish] generating consensus [=====> ] 0.293123 s [racon::Polisher::polish] generating consensus [======> ] 0.313118 s [racon::Polisher::polish] generating consensus [=======> ] 0.341126 s [racon::Polisher::polish] generating consensus [========> ] 0.365175 s [racon::Polisher::polish] generating consensus [=========> ] 0.405134 s [racon::Polisher::polish] generating consensus [==========> ] 0.469108 s [racon::Polisher::polish] generating consensus [===========> ] 0.557124 s [racon::Polisher::polish] generating consensus [============> ] 0.645147 s [racon::Polisher::polish] generating consensus [=============> ] 0.765120 s [racon::Polisher::polish] generating consensus [==============> ] 0.917126 s [racon::Polisher::polish] generating consensus [===============> ] 1.005133 s [racon::Polisher::polish] generating consensus [================> ] 1.021193 s [racon::Polisher::polish] generating consensus [=================> ] 1.057106 s [racon::Polisher::polish] generating consensus [==================> ] 1.061120 s [racon::Polisher::polish] generating consensus [===================>] 1.061170 s [racon::Polisher::polish] generating consensus [====================] 1.129226 s [racon::Polisher::] total = 1.874098 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (1882 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.098562 s [racon::Polisher::initialize] loaded sequences 0.103086 s [racon::Polisher::initialize] loaded overlaps 0.031304 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.099911 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.131925 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.171916 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.203912 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.235904 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.267932 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.323903 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.355942 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.403919 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.439900 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.471920 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.499929 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.515940 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.535908 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.563907 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.571916 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.583909 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.607909 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.627923 s [racon::Polisher::initialize] aligning overlaps [====================] 0.663908 s [racon::Polisher::initialize] transformed data into windows 0.012929 s [racon::Polisher::polish] generating consensus [=> ] 0.075092 s [racon::Polisher::polish] generating consensus [==> ] 0.131213 s [racon::Polisher::polish] generating consensus [===> ] 0.207200 s [racon::Polisher::polish] generating consensus [====> ] 0.207395 s [racon::Polisher::polish] generating consensus [=====> ] 0.243121 s [racon::Polisher::polish] generating consensus [======> ] 0.278977 s [racon::Polisher::polish] generating consensus [=======> ] 0.315147 s [racon::Polisher::polish] generating consensus [========> ] 0.323185 s [racon::Polisher::polish] generating consensus [=========> ] 0.398999 s [racon::Polisher::polish] generating consensus [==========> ] 0.430955 s [racon::Polisher::polish] generating consensus [===========> ] 0.459096 s [racon::Polisher::polish] generating consensus [============> ] 0.475075 s [racon::Polisher::polish] generating consensus [=============> ] 0.507096 s [racon::Polisher::polish] generating consensus [==============> ] 0.511001 s [racon::Polisher::polish] generating consensus [===============> ] 0.599215 s [racon::Polisher::polish] generating consensus [================> ] 0.599672 s [racon::Polisher::polish] generating consensus [=================> ] 0.706958 s [racon::Polisher::polish] generating consensus [==================> ] 0.723346 s [racon::Polisher::polish] generating consensus [===================>] 0.723599 s [racon::Polisher::polish] generating consensus [====================] 0.735038 s [racon::Polisher::] total = 1.645755 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (1655 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.098418 s [racon::Polisher::initialize] loaded sequences 0.096906 s [racon::Polisher::initialize] loaded overlaps 0.029581 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.952230 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.612217 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.216214 s [racon::Polisher::initialize] aligning overlaps [====> ] 3.112241 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.752231 s [racon::Polisher::initialize] aligning overlaps [======> ] 4.324200 s [racon::Polisher::initialize] aligning overlaps [=======> ] 5.052201 s [racon::Polisher::initialize] aligning overlaps [========> ] 5.719046 s [racon::Polisher::initialize] aligning overlaps [=========> ] 6.720208 s [racon::Polisher::initialize] aligning overlaps [==========> ] 7.468212 s [racon::Polisher::initialize] aligning overlaps [===========> ] 8.116197 s [racon::Polisher::initialize] aligning overlaps [============> ] 8.628215 s [racon::Polisher::initialize] aligning overlaps [=============> ] 9.112231 s [racon::Polisher::initialize] aligning overlaps [==============> ] 9.836231 s [racon::Polisher::initialize] aligning overlaps [===============> ] 10.468210 s [racon::Polisher::initialize] aligning overlaps [================> ] 10.980192 s [racon::Polisher::initialize] aligning overlaps [=================> ] 11.464208 s [racon::Polisher::initialize] aligning overlaps [==================> ] 11.980220 s [racon::Polisher::initialize] aligning overlaps [===================>] 12.292204 s [racon::Polisher::initialize] aligning overlaps [====================] 12.434525 s [racon::Polisher::initialize] transformed data into windows 0.087576 s [racon::Polisher::polish] generating consensus [=> ] 2.715305 s [racon::Polisher::polish] generating consensus [==> ] 4.635314 s [racon::Polisher::polish] generating consensus [===> ] 6.811472 s [racon::Polisher::polish] generating consensus [====> ] 9.459424 s [racon::Polisher::polish] generating consensus [=====> ] 11.187342 s [racon::Polisher::polish] generating consensus [======> ] 12.331334 s [racon::Polisher::polish] generating consensus [=======> ] 13.623308 s [racon::Polisher::polish] generating consensus [========> ] 14.447308 s [racon::Polisher::polish] generating consensus [=========> ] 15.499321 s [racon::Polisher::polish] generating consensus [==========> ] 17.091319 s [racon::Polisher::polish] generating consensus [===========> ] 18.203362 s [racon::Polisher::polish] generating consensus [============> ] 19.903408 s [racon::Polisher::polish] generating consensus [=============> ] 20.967316 s [racon::Polisher::polish] generating consensus [==============> ] 22.942876 s [racon::Polisher::polish] generating consensus [===============> ] 24.399301 s [racon::Polisher::polish] generating consensus [================> ] 25.011344 s [racon::Polisher::polish] generating consensus [=================> ] 26.823281 s [racon::Polisher::polish] generating consensus [==================> ] 28.063327 s [racon::Polisher::polish] generating consensus [===================>] 28.887298 s [racon::Polisher::polish] generating consensus [====================] 29.435388 s [racon::Polisher::] total = 42.187061 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (42195 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.042456 s [racon::Polisher::initialize] loaded sequences 0.042238 s [racon::Polisher::initialize] loaded overlaps 0.030821 s [racon::Polisher::initialize] aligning overlaps [=> ] 1.041637 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.673663 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.265662 s [racon::Polisher::initialize] aligning overlaps [====> ] 3.081658 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.662308 s [racon::Polisher::initialize] aligning overlaps [======> ] 4.221639 s [racon::Polisher::initialize] aligning overlaps [=======> ] 4.889646 s [racon::Polisher::initialize] aligning overlaps [========> ] 5.429614 s [racon::Polisher::initialize] aligning overlaps [=========> ] 5.861624 s [racon::Polisher::initialize] aligning overlaps [==========> ] 6.309629 s [racon::Polisher::initialize] aligning overlaps [===========> ] 6.917634 s [racon::Polisher::initialize] aligning overlaps [============> ] 7.497650 s [racon::Polisher::initialize] aligning overlaps [=============> ] 8.089671 s [racon::Polisher::initialize] aligning overlaps [==============> ] 8.669695 s [racon::Polisher::initialize] aligning overlaps [===============> ] 9.221925 s [racon::Polisher::initialize] aligning overlaps [================> ] 9.965621 s [racon::Polisher::initialize] aligning overlaps [=================> ] 10.845619 s [racon::Polisher::initialize] aligning overlaps [==================> ] 11.805665 s [racon::Polisher::initialize] aligning overlaps [===================>] 12.393662 s [racon::Polisher::initialize] aligning overlaps [====================] 12.546042 s [racon::Polisher::initialize] transformed data into windows 0.022239 s [racon::Polisher::polish] generating consensus [=> ] 3.506857 s [racon::Polisher::polish] generating consensus [==> ] 5.814873 s [racon::Polisher::polish] generating consensus [===> ] 7.478910 s [racon::Polisher::polish] generating consensus [====> ] 8.726920 s [racon::Polisher::polish] generating consensus [=====> ] 11.354862 s [racon::Polisher::polish] generating consensus [======> ] 13.542867 s [racon::Polisher::polish] generating consensus [=======> ] 15.962857 s [racon::Polisher::polish] generating consensus [========> ] 17.386861 s [racon::Polisher::polish] generating consensus [=========> ] 19.178852 s [racon::Polisher::polish] generating consensus [==========> ] 21.742862 s [racon::Polisher::polish] generating consensus [===========> ] 23.866937 s [racon::Polisher::polish] generating consensus [============> ] 26.238959 s [racon::Polisher::polish] generating consensus [=============> ] 28.050849 s [racon::Polisher::polish] generating consensus [==============> ] 31.086872 s [racon::Polisher::polish] generating consensus [===============> ] 33.430917 s [racon::Polisher::polish] generating consensus [================> ] 35.111053 s [racon::Polisher::polish] generating consensus [=================> ] 37.102836 s [racon::Polisher::polish] generating consensus [==================> ] 40.190937 s [racon::Polisher::polish] generating consensus [===================>] 41.882850 s [racon::Polisher::polish] generating consensus [====================] 42.804986 s [racon::Polisher::] total = 55.492289 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (55496 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.048382 s [racon::Polisher::initialize] loaded sequences 0.047949 s [racon::Polisher::initialize] loaded overlaps 0.013666 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.606260 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.954229 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.238267 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.654232 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.970244 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.238249 s [racon::Polisher::initialize] aligning overlaps [=======> ] 2.586254 s [racon::Polisher::initialize] aligning overlaps [========> ] 3.006253 s [racon::Polisher::initialize] aligning overlaps [=========> ] 3.486208 s [racon::Polisher::initialize] aligning overlaps [==========> ] 3.846185 s [racon::Polisher::initialize] aligning overlaps [===========> ] 4.170193 s [racon::Polisher::initialize] aligning overlaps [============> ] 4.594227 s [racon::Polisher::initialize] aligning overlaps [=============> ] 5.073524 s [racon::Polisher::initialize] aligning overlaps [==============> ] 5.512844 s [racon::Polisher::initialize] aligning overlaps [===============> ] 5.966387 s [racon::Polisher::initialize] aligning overlaps [================> ] 6.474214 s [racon::Polisher::initialize] aligning overlaps [=================> ] 6.919537 s [racon::Polisher::initialize] aligning overlaps [==================> ] 7.349719 s [racon::Polisher::initialize] aligning overlaps [===================>] 7.776184 s [racon::Polisher::initialize] aligning overlaps [====================] 8.079964 s [racon::Polisher::initialize] transformed data into windows 0.073660 s [racon::Polisher::polish] generating consensus [=> ] 1.292644 s [racon::Polisher::polish] generating consensus [==> ] 2.241736 s [racon::Polisher::polish] generating consensus [===> ] 3.221108 s [racon::Polisher::polish] generating consensus [====> ] 4.062828 s [racon::Polisher::polish] generating consensus [=====> ] 5.578872 s [racon::Polisher::polish] generating consensus [======> ] 6.616935 s [racon::Polisher::polish] generating consensus [=======> ] 7.536402 s [racon::Polisher::polish] generating consensus [========> ] 8.239707 s [racon::Polisher::polish] generating consensus [=========> ] 9.327299 s [racon::Polisher::polish] generating consensus [==========> ] 11.118750 s [racon::Polisher::polish] generating consensus [===========> ] 12.475236 s [racon::Polisher::polish] generating consensus [============> ] 13.540911 s [racon::Polisher::polish] generating consensus [=============> ] 14.428564 s [racon::Polisher::polish] generating consensus [==============> ] 15.301239 s [racon::Polisher::polish] generating consensus [===============> ] 16.316349 s [racon::Polisher::polish] generating consensus [================> ] 16.847786 s [racon::Polisher::polish] generating consensus [=================> ] 17.942721 s [racon::Polisher::polish] generating consensus [==================> ] 18.957735 s [racon::Polisher::polish] generating consensus [===================>] 19.954760 s [racon::Polisher::polish] generating consensus [====================] 20.414948 s [racon::Polisher::] total = 28.682480 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (28685 ms) [----------] 10 tests from RaconPolishingTest (140829 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (140904 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/racon-1.5.0 -B/build/racon-1.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/racon-1.5.0/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_amd64.deb'. dpkg-deb: building package 'racon' in '../racon_1.5.0-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_amd64.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1252620/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1252620/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1252620 and its subdirectories I: Current time: Mon Jun 24 13:48:10 +14 2024 I: pbuilder-time-stamp: 1719186490