I: pbuilder: network access will be disabled during build I: Current time: Tue Jun 18 12:37:36 -12 2024 I: pbuilder-time-stamp: 1718757456 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pairix_0.3.7-6.dsc] I: copying [./python-pairix_0.3.7.orig.tar.gz] I: copying [./python-pairix_0.3.7-6.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Nov 30 09:22:55 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-pairix_0.3.7-6.dsc: no acceptable signature found dpkg-source: info: extracting python-pairix in python-pairix-0.3.7 dpkg-source: info: unpacking python-pairix_0.3.7.orig.tar.gz dpkg-source: info: unpacking python-pairix_0.3.7-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python3.10 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3229154/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='03e7dd2d5e574232be9c8065cfb14d63' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3229154' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XU49Kb20/pbuilderrc_3eSC --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XU49Kb20/b1 --logfile b1/build.log python-pairix_0.3.7-6.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 2023 more -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/3229154/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, zlib1g-dev, python3-pytest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-dev{a} python3-distutils{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pytest{a} python3-setuptools{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pygments wget 0 packages upgraded, 66 newly installed, 0 to remove and 0 not upgraded. Need to get 35.0 MB of archives. After unpacking 141 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get: 53 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get: 54 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get: 55 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get: 58 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 60 http://deb.debian.org/debian bookworm/main amd64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 python3-py all 1.11.0-1 [89.2 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 python3-pytest all 7.2.1-2 [236 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Fetched 35.0 MB in 2s (19.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19912 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../3-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_amd64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20346 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... 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Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-pairix-0.3.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pairix_0.3.7-6_source.changes dpkg-buildpackage: info: source package python-pairix dpkg-buildpackage: info: source version 0.3.7-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( running clean removing '/build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( running build running build_ext building 'pypairix' extension creating build creating build/temp.linux-x86_64-cpython-311 creating build/temp.linux-x86_64-cpython-311/src x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pairix-0.3.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.11 -c src/bgzf.c -o build/temp.linux-x86_64-cpython-311/src/bgzf.o src/bgzf.c: In function 'bgzf_block_length': src/bgzf.c:331:34: warning: unused variable 'remaining' [-Wunused-variable] 331 | int count, block_length, remaining; | ^~~~~~~~~ src/bgzf.c:330:47: warning: unused variable 'compressed_block' [-Wunused-variable] 330 | uint8_t header[BLOCK_HEADER_LENGTH], *compressed_block; | ^~~~~~~~~~~~~~~~ src/bgzf.c: In function 'bgzf_flush': src/bgzf.c:419:75: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 419 | if (fwrite(fp->compressed_block, 1, block_length, fp->fp) != block_length) { | ^~ src/bgzf.c: In function 'bgzf_close': src/bgzf.c:456:18: warning: variable 'count' set but not used [-Wunused-but-set-variable] 456 | int ret, count, block_length; | ^~~~~ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pairix-0.3.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.11 -c src/bgzip.c -o build/temp.linux-x86_64-cpython-311/src/bgzip.o src/bgzip.c: In function 'main': src/bgzip.c:198:25: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result] 198 | write(f_dst, buffer, c); | ^~~~~~~~~~~~~~~~~~~~~~~ src/bgzip.c: In function 'write_open': src/bgzip.c:57:25: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result] 57 | scanf("%c", &c); | ^~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pairix-0.3.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.11 -c src/index.c -o build/temp.linux-x86_64-cpython-311/src/index.o src/index.c: In function 'merge_chunks': src/index.c:354:39: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 354 | for (l = 1; l < p->n; ++l) { | ^ src/index.c: In function 'ti_index_core': src/index.c:393:42: warning: overflow in conversion from 'uint32_t' {aka 'unsigned int'} to 'int32_t' {aka 'int'} changes value from 'last_bin = 4294967295' to '-1' [-Woverflow] 393 | save_bin = save_tid = last_tid = last_bin = 0xffffffffu; | ^~~~~~~~ src/index.c:399:28: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int32_t' {aka 'int'} [-Wsign-compare] 399 | if (lineno <= idx->conf.line_skip || str->s[0] == idx->conf.meta_char) { | ^~ src/index.c:423:30: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 423 | if (intv.bin != last_bin) { // then possibly write the binning index | ^~ src/index.c:431:35: warning: comparison of integer expressions of different signedness: 'int64_t' {aka 'long int'} and 'uint64_t' {aka 'long unsigned int'} [-Wsign-compare] 431 | if (bgzf_tell(fp) <= last_off) { | ^~ src/index.c: In function 'ti_index_save': src/index.c:510:31: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'khint_t' {aka 'unsigned int'} [-Wsign-compare] 510 | for (i = 0; i < kh_size(idx->tname); ++i) | ^ src/index.c:514:31: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'khint_t' {aka 'unsigned int'} [-Wsign-compare] 514 | for (i = 0; i < kh_size(idx->tname); ++i) | ^ src/index.c:534:60: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 534 | for (x = 0; (int)x < p->n; ++x) { | ^ src/index.c:539:60: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 539 | for (x = 0; (int)x < p->n; ++x) { | ^ src/index.c: In function 'ti_index_load_core': src/index.c:659:47: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 659 | for (x = 0; x < p->n; ++x) { | ^ src/index.c: In function 'ti_parse_region2d': src/index.c:864:69: warning: passing argument 1 of 'ti_get_region_split_character' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 864 | char region_split_character = ti_get_region_split_character(idx); | ^~~ In file included from src/index.c:11: src/pairix.h:218:56: note: expected 'ti_index_t *' {aka 'struct __ti_index_t *'} but argument is of type 'const ti_index_t *' {aka 'const struct __ti_index_t *'} 218 | char ti_get_region_split_character(ti_index_t *idx); | ~~~~~~~~~~~~^~~ src/index.c:878:30: warning: passing argument 1 of 'ti_get_sc2' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 878 | int dim = ti_get_sc2(idx)+1==0?1:2; | ^~~ src/pairix.h:209:36: note: expected 'ti_index_t *' {aka 'struct __ti_index_t *'} but argument is of type 'const ti_index_t *' {aka 'const struct __ti_index_t *'} 209 | int ti_get_sc2(ti_index_t *idx); | ~~~~~~~~~~~~^~~ src/index.c: In function 'reg2bins': src/index.c:974:56: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 974 | for (k = 1 + (beg>>TAD_LIDX_SHIFT_PL12); k <= 1 + (end>>TAD_LIDX_SHIFT_PL12); ++k) list[i++] = k; | ^~ src/index.c:975:55: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 975 | for (k = 9 + (beg>>TAD_LIDX_SHIFT_PL9); k <= 9 + (end>>TAD_LIDX_SHIFT_PL9); ++k) list[i++] = k; | ^~ src/index.c:976:55: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 976 | for (k = 73 + (beg>>TAD_LIDX_SHIFT_PL6); k <= 73 + (end>>TAD_LIDX_SHIFT_PL6); ++k) list[i++] = k; | ^~ src/index.c:977:55: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 977 | for (k = 585 + (beg>>TAD_LIDX_SHIFT_PL3); k <= 585 + (end>>TAD_LIDX_SHIFT_PL3); ++k) list[i++] = k; | ^~ src/index.c:978:51: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 978 | for (k = 4681 + (beg>>TAD_LIDX_SHIFT); k <= 4681 + (end>>TAD_LIDX_SHIFT); ++k) list[i++] = k; | ^~ src/index.c: In function 'ti_iter_query': src/index.c:1038:39: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 1038 | for (j = 0; j < p->n; ++j) | ^ src/index.c: In function 'ti_querys_2d_general': src/index.c:1219:31: warning: initialization of 'char **' from incompatible pointer type 'const char **' [-Wincompatible-pointer-types] 1219 | char **chrpairlist = ti_seqname(t->idx, &n_seqpair_list); | ^~~~~~~~~~ src/index.c:1236:59: warning: passing argument 2 of 'ti_querys_2d_multi' from incompatible pointer type [-Wincompatible-pointer-types] 1236 | sequential_iter_t *siter = ti_querys_2d_multi(t, regions, n_sub_list); | ^~~~~~~ | | | char ** src/pairix.h:131:73: note: expected 'const char **' but argument is of type 'char **' 131 | sequential_iter_t *ti_querys_2d_multi(pairix_t *t, const char **regs, int nRegs); | ~~~~~~~~~~~~~^~~~ src/index.c:1242:30: warning: initialization discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1242 | *sp=0; char *chr1 = reg; | ^~~ src/index.c:1246:31: warning: initialization of 'char **' from incompatible pointer type 'const char **' [-Wincompatible-pointer-types] 1246 | char **chrpairlist = ti_seqname(t->idx, &n_seqpair_list); | ^~~~~~~~~~ src/index.c:1263:59: warning: passing argument 2 of 'ti_querys_2d_multi' from incompatible pointer type [-Wincompatible-pointer-types] 1263 | sequential_iter_t *siter = ti_querys_2d_multi(t, regions, n_sub_list); | ^~~~~~~ | | | char ** src/pairix.h:131:73: note: expected 'const char **' but argument is of type 'char **' 131 | sequential_iter_t *ti_querys_2d_multi(pairix_t *t, const char **regs, int nRegs); | ~~~~~~~~~~~~~^~~~ src/index.c: In function 'ti_query_2d_tid': src/index.c:1417:31: warning: returning 'ti_iter_t' {aka 'struct __ti_iter_t *'} from a function with return type 'int' makes integer from pointer without a cast [-Wint-conversion] 1417 | if (name == 0) return ti_iter_first(); | ^~~~~~~~~~~~~~~ src/index.c: In function 'create_merged_iter': src/index.c:1469:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 1469 | if( miter->iu = calloc(n,sizeof(iter_unit*))) { | ^~~~~ src/index.c: In function 'merged_ti_read': src/index.c:1537:19: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1537 | miu[i]->s = ti_iter_read(miu[i]->t->fp, miu[i]->iter, miu[i]->len, seqonly); | ^ src/index.c:1543:17: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1543 | miu[0]->s = ti_iter_read(miu[0]->t->fp, miu[0]->iter, miu[0]->len, seqonly); // get next entry for the flushed iter | ^ src/index.c: In function 'sequential_ti_read': src/index.c:1573:15: warning: initialization discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1573 | char *s = ti_iter_read(siter->t->fp,siter->iter[siter->curr], len, 0); | ^~~~~~~~~~~~ src/index.c:1576:9: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1576 | s = ti_iter_read(siter->t->fp,siter->iter[siter->curr], len, 0); | ^ src/index.c: In function 'get_unique_merged_seqname': src/index.c:1643:22: warning: assignment to 'char **' from incompatible pointer type 'const char **' [-Wincompatible-pointer-types] 1643 | seqnames = ti_seqname(tbs[i]->idx,&len); | ^ src/index.c: In function 'flip_region': src/index.c:1744:19: warning: variable 'split_pos' set but not used [-Wunused-but-set-variable] 1744 | int l, i, l2, split_pos; | ^~~~~~~~~ src/index.c: In function 'querys_2D_wrapper': src/index.c:1911:34: warning: passing argument 1 of 'flip_region' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1911 | char *reg2 = flip_region(reg, get_region_split_character(tb)); | ^~~ src/index.c:1743:27: note: expected 'char *' but argument is of type 'const char *' 1743 | char *flip_region ( char* s, char region_split_character) { | ~~~~~~^ src/index.c: In function 'check_triangle': src/index.c:1971:23: warning: initialization of 'char **' from incompatible pointer type 'const char **' [-Wincompatible-pointer-types] 1971 | char **seqnames = ti_seqname(idx,&len); | ^~~~~~~~~~ src/index.c:1977:64: warning: passing argument 1 of 'free' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1977 | if(ti_get_tid(idx, reg2)!=-1) { free(seqnames); free(reg2); return(0); } // not a triangle | ^~~~ In file included from src/khash.h:94, from src/index.c:4: /usr/include/stdlib.h:568:25: note: expected 'void *' but argument is of type 'const char *' 568 | extern void free (void *__ptr) __THROW; | ~~~~~~^~~~~ src/index.c:1978:14: warning: passing argument 1 of 'free' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1978 | free(reg2); | ^~~~ /usr/include/stdlib.h:568:25: note: expected 'void *' but argument is of type 'const char *' 568 | extern void free (void *__ptr) __THROW; | ~~~~~~^~~~~ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pairix-0.3.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.11 -c src/knetfile.c -o build/temp.linux-x86_64-cpython-311/src/knetfile.o In file included from src/knetfile.c:49: src/knetfile.c: In function 'kftp_send_cmd': src/knetfile.h:9:32: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result] 9 | #define netwrite(fd, ptr, len) write(fd, ptr, len) | ^~~~~~~~~~~~~~~~~~~ src/knetfile.c:239:9: note: in expansion of macro 'netwrite' 239 | netwrite(ftp->ctrl_fd, cmd, strlen(cmd)); | ^~~~~~~~ src/knetfile.c: In function 'khttp_connect_file': src/knetfile.h:9:32: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result] 9 | #define netwrite(fd, ptr, len) write(fd, ptr, len) | ^~~~~~~~~~~~~~~~~~~ src/knetfile.c:418:9: note: in expansion of macro 'netwrite' 418 | netwrite(fp->fd, buf, l); | ^~~~~~~~ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pairix-0.3.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.11 -c src/kstring.c -o build/temp.linux-x86_64-cpython-311/src/kstring.o src/kstring.c: In function 'ksprintf': src/kstring.c:15:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 15 | if (l + 1 > s->m - s->l) { | ^ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pairix-0.3.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.11 -c src/pairixmodule.c -o build/temp.linux-x86_64-cpython-311/src/pairixmodule.o src/pairixmodule.c: In function 'pairix_new': src/pairixmodule.c:367:9: warning: unused variable 'i' [-Wunused-variable] 367 | int i; | ^ src/pairixmodule.c: In function 'pairix_querys_2D': src/pairixmodule.c:559:28: warning: passing argument 1 of 'flip_region' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 559 | reg2 = flip_region(reg, get_region_split_character(self->tb)); | ^~~ In file included from src/pairixmodule.c:34: src/pairix.h:223:33: note: expected 'char *' but argument is of type 'const char *' 223 | char* flip_region(char *s, char region_split_character); | ~~~~~~^ src/pairixmodule.c: In function 'pairix_get_blocknames': src/pairixmodule.c:603:23: warning: initialization of 'char **' from incompatible pointer type 'const char **' [-Wincompatible-pointer-types] 603 | char **blocknames = ti_seqname(self->tb->idx, &n); | ^~~~~~~~~~ src/pairixmodule.c: In function 'pairix_get_header': src/pairixmodule.c:693:15: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 693 | while ((s = sequential_ti_read(siter, &len)) != 0) { | ^ src/pairixmodule.c:704:15: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 704 | while ((s = sequential_ti_read(siter, &len)) != 0) { | ^ src/pairixmodule.c: In function 'pairix_get_chromsize': src/pairixmodule.c:726:15: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 726 | while ((s = sequential_ti_read(siter, &len)) != 0) { | ^ src/pairixmodule.c:738:15: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 738 | while ((s = sequential_ti_read(siter, &len)) != 0) { | ^ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-pairix-0.3.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/src/bgzf.o build/temp.linux-x86_64-cpython-311/src/bgzip.o build/temp.linux-x86_64-cpython-311/src/index.o build/temp.linux-x86_64-cpython-311/src/knetfile.o build/temp.linux-x86_64-cpython-311/src/kstring.o build/temp.linux-x86_64-cpython-311/src/pairixmodule.o -L/usr/lib/x86_64-linux-gnu -lz -o /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/pypairix.cpython-311-x86_64-linux-gnu.so dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:307: cp -a /build/python-pairix-0.3.7/samples /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build; cp -a /build/python-pairix-0.3.7/VERSION.txt /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build; I: pybuild base:240: cd /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build; python3.11 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack rootdir: /build/python-pairix-0.3.7 collected 48 items test/test_oldindex.py ........................ [ 50%] test/test_oldindex2.py ........................ [100%] =============================== warnings summary =============================== test/test_oldindex.py:60 /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/test/test_oldindex.py:60: DeprecationWarning: invalid escape sequence '\s' fields = line.rstrip().split('\s+') test/test_oldindex2.py:59 /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/test/test_oldindex2.py:59: DeprecationWarning: invalid escape sequence '\s' fields = line.rstrip().split('\s+') -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================= 48 passed, 2 warnings in 39.27s ======================== The file is a triangle. The file is a triangle. The file is not a triangle. The file is a triangle. The file is a triangle. The file is not a triangle. create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-pairix-0.3.7/debian/python3-pairix /usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_ext running install_lib creating /build/python-pairix-0.3.7/debian/python3-pairix creating /build/python-pairix-0.3.7/debian/python3-pairix/usr creating /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib creating /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11 creating /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/VERSION.txt -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages creating /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test_old_merged_nodups.txt.bsorted.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test_old_merged_nodups.txt.bsorted.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test_old_merged_nodups.txt -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test_old_merged_nodups.pairs -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test_old_merged_nodups.bsorted.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test_old_merged_nodups.bsorted.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test_merged_nodups.txt.bsorted.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test_merged_nodups.txt.bsorted.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test_merged_nodups.txt -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test_merged_nodups.pairs -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test_merged_nodups.bsorted.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test_merged_nodups.bsorted.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test_juicer_shortform.txt -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test_juicer_shortform.pairs -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test_juicer_shortform.bsorted.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test_juicer_shortform.bsorted.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test_4dn_2.bsorted.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test_4dn_2.bsorted.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test_4dn.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test_4dn.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test_4dn.cp.pairs -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test.regions2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test.regions -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/test.bed -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples creating /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index2/test_4dn.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index2/test_4dn.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index2/mock.largechr.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index2/mock.largechr.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index2/merged_nodups.space.chrblock_sorted.subsample1.txt.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index2/merged_nodups.space.chrblock_sorted.subsample1.txt.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index2/merged_nodup.tab.chrblock_sorted.txt.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index2/merged_nodup.tab.chrblock_sorted.txt.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index2/SRR1171591.variants.snp.vqsr.p.vcf.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index2/SRR1171591.variants.snp.vqsr.p.vcf.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index2/4dn.bsorted.chr21_22_only.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index2/4dn.bsorted.chr21_22_only.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index2/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index2 copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index2/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index2 creating /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test_old_merged_nodups.txt.bsorted.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test_old_merged_nodups.txt.bsorted.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test_old_merged_nodups.txt -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test_old_merged_nodups.pairs -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test_old_merged_nodups.bsorted.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test_old_merged_nodups.bsorted.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test_merged_nodups.txt.bsorted.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test_merged_nodups.txt.bsorted.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test_merged_nodups.txt -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test_merged_nodups.pairs -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test_merged_nodups.bsorted.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test_merged_nodups.bsorted.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test_juicer_shortform.txt -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test_juicer_shortform.pairs -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test_juicer_shortform.bsorted.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test_juicer_shortform.bsorted.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test_4dn_2.bsorted.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test_4dn_2.bsorted.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test_4dn.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test_4dn.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test_4dn.cp.pairs -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test.regions2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test.regions -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/test.bed -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/mock.largechr.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/mock.largechr.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.txt.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.txt.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.pairs -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.nofrag.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.nofrag.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.ff.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.ff.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample2.txt.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample2.txt.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample1.txt.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample1.txt.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/merged_nodup.tab.chrblock_sorted.txt.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/merged_nodup.tab.chrblock_sorted.txt.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/hg19.chrom.sizes.chr21_22_only:50000 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/hg19.chrom.sizes.chr21_22_only -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/hg19.chrom.sizes.-chr -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/SRR1171591.variants.snp.vqsr.p.vcf.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/SRR1171591.variants.snp.vqsr.p.vcf.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/4dn.bsorted.chr21_22_only.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/4dn.bsorted.chr21_22_only.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/old_index/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples/old_index copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/mock.largechr.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/mock.largechr.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.txt.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.txt.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.pairs -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.nofrag.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.nofrag.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.ff.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.ff.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample2.txt.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample2.txt.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample1.txt.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample1.txt.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/merged_nodup.tab.chrblock_sorted.txt.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/merged_nodup.tab.chrblock_sorted.txt.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/hg19.chrom.sizes.chr21_22_only:50000 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/hg19.chrom.sizes.chr21_22_only -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/hg19.chrom.sizes.-chr -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/SRR1171591.variants.snp.vqsr.p.vcf.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/SRR1171591.variants.snp.vqsr.p.vcf.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/4dn.bsorted.chr21_22_only.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/4dn.bsorted.chr21_22_only.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz.px2 -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/samples/4dn.bsorted.chr21_22_only.largechr.pairs -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/samples copying /build/python-pairix-0.3.7/.pybuild/cpython3_3.11_pairix/build/pypairix.cpython-311-x86_64-linux-gnu.so -> /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages running install_egg_info running egg_info creating pypairix.egg-info writing pypairix.egg-info/PKG-INFO writing dependency_links to pypairix.egg-info/dependency_links.txt writing top-level names to pypairix.egg-info/top_level.txt writing manifest file 'pypairix.egg-info/SOURCES.txt' reading manifest file 'pypairix.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'pypairix.egg-info/SOURCES.txt' Copying pypairix.egg-info to /build/python-pairix-0.3.7/debian/python3-pairix/usr/lib/python3.11/dist-packages/pypairix-0.3.7.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/python-pairix-0.3.7' tar caf samples.tar.xz samples --mode=go=rX,u+rw,a-s --owner=0 --group=0 --numeric-owner --sort=name dh_install find debian/python3-pairix/usr/lib -name samples -type d | xargs rm -rf find debian/*/usr/lib -name VERSION.txt -delete make[1]: Leaving directory '/build/python-pairix-0.3.7' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-pairix: substitution variable ${shlib:Depends} used, but is not defined dpkg-gencontrol: warning: package python3-pairix: substitution variable ${shlibs:Depends} unused, but is defined dpkg-gencontrol: warning: Depends field of package python3-pairix: substitution variable ${shlib:Depends} used, but is not defined dpkg-gencontrol: warning: package python3-pairix: substitution variable ${shlibs:Depends} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pairix' in '../python3-pairix_0.3.7-6_amd64.deb'. dpkg-deb: building package 'python-pairix-examples' in '../python-pairix-examples_0.3.7-6_all.deb'. dpkg-deb: building package 'python3-pairix-dbgsym' in '../python3-pairix-dbgsym_0.3.7-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../python-pairix_0.3.7-6_amd64.buildinfo dpkg-genchanges --build=binary -O../python-pairix_0.3.7-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3229154 and its subdirectories I: Current time: Tue Jun 18 12:47:58 -12 2024 I: pbuilder-time-stamp: 1718758078