I: pbuilder: network access will be disabled during build I: Current time: Mon Apr 24 21:57:20 -12 2023 I: pbuilder-time-stamp: 1682416640 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-cobra_0.26.2-1.dsc] I: copying [./python-cobra_0.26.2.orig.tar.gz] I: copying [./python-cobra_0.26.2-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Feb 5 09:32:48 2023 -12 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-cobra_0.26.2-1.dsc: no acceptable signature found dpkg-source: info: extracting python-cobra in python-cobra-0.26.2 dpkg-source: info: unpacking python-cobra_0.26.2.orig.tar.gz dpkg-source: info: unpacking python-cobra_0.26.2-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying mathjax.patch dpkg-source: info: applying xfail_test_show_versions.patch dpkg-source: info: applying ignore_tests.patch dpkg-source: info: applying do-not-seek-for-name.patch dpkg-source: info: applying numpy_1.24.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2051278/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='74b062505b9a4a8194b0b0549a5825fa' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2051278' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.d7wZp9Vl/pbuilderrc_yDzp --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.d7wZp9Vl/b1 --logfile b1/build.log python-cobra_0.26.2-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 04:31 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 04:31 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/2051278/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-future, python3-importlib-resources, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas, python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 4.65.1), python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-pytest-mock, python3-jsonschema, libsbml5, python3-matplotlib, python3-appdirs, python3-diskcache, python3-httpx, python3-pydantic, python3-rich dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libglpk-dev; however: Package libglpk-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-depinfo; however: Package python3-depinfo is not installed. pbuilder-satisfydepends-dummy depends on python3-future; however: Package python3-future is not installed. pbuilder-satisfydepends-dummy depends on python3-importlib-resources; however: Package python3-importlib-resources is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-optlang; however: Package python3-optlang is not installed. pbuilder-satisfydepends-dummy depends on python3-ruamel.yaml; however: Package python3-ruamel.yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pip; however: Package python3-pip is not installed. pbuilder-satisfydepends-dummy depends on python3-pipdeptree; however: Package python3-pipdeptree is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-swiglpk (>= 4.65.1); however: Package python3-swiglpk is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate; however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-sbml5; however: Package python3-sbml5 is not installed. pbuilder-satisfydepends-dummy depends on python3-simplejson; however: Package python3-simplejson is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-benchmark; however: Package python3-pytest-benchmark is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-jsonschema; however: Package python3-jsonschema is not installed. pbuilder-satisfydepends-dummy depends on libsbml5; however: Package libsbml5 is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-appdirs; however: Package python3-appdirs is not installed. pbuilder-satisfydepends-dummy depends on python3-diskcache; however: Package python3-diskcache is not installed. pbuilder-satisfydepends-dummy depends on python3-httpx; however: Package python3-httpx is not installed. pbuilder-satisfydepends-dummy depends on python3-pydantic; however: Package python3-pydantic is not installed. pbuilder-satisfydepends-dummy depends on python3-rich; however: Package python3-rich is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libamd2{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbtf1{a} libcamd2{a} libccolamd2{a} libcholmod3{a} libcolamd2{a} libcxsparse3{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libglpk-dev{a} libglpk40{a} libgmp-dev{a} libgmpxx4ldbl{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libklu1{a} liblapack-dev{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldl2{a} liblerc4{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmetis5{a} libmongoose2{a} libopenjp2-7{a} libpipeline1{a} libpng16-16{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libraqm0{a} librbio2{a} libreadline8{a} libsbml5{a} libsliplu1{a} libspqr2{a} libsub-override-perl{a} libsuitesparse-dev{a} libsuitesparseconfig5{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libumfpack5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxsimd-dev{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} openssl{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-anyio{a} python3-appdirs{a} python3-attr{a} python3-beniget{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-contourpy{a} python3-cpuinfo{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-depinfo{a} python3-dev{a} python3-diskcache{a} python3-distutils{a} python3-fonttools{a} python3-fs{a} python3-future{a} python3-gast{a} python3-h11{a} python3-httpcore{a} python3-httpx{a} python3-idna{a} python3-importlib-resources{a} python3-iniconfig{a} python3-jsonschema{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-markdown-it{a} python3-matplotlib{a} python3-mdurl{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-optlang{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pip{a} python3-pipdeptree{a} python3-pkg-resources{a} python3-pluggy{a} python3-ply{a} python3-py{a} python3-pydantic{a} python3-pygments{a} python3-pyparsing{a} python3-pyrsistent{a} python3-pytest{a} python3-pytest-benchmark{a} python3-pytest-mock{a} python3-pythran{a} python3-requests{a} python3-rfc3986{a} python3-rich{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-sbml5{a} python3-scipy{a} python3-setuptools{a} python3-simplejson{a} python3-six{a} python3-sniffio{a} python3-swiglpk{a} python3-sympy{a} python3-tabulate{a} python3-tk{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-urllib3{a} python3-wheel{a} python3-zipp{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} swig{a} swig4.0{a} tk8.6-blt2.5{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libgraphblas-dev libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-elasticsearch python3-freezegun python3-graphviz python3-html5lib python3-jinja2 python3-json-pointer python3-numba python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pygal python3-rfc3987 python3-tables python3-uritemplate python3-webcolors shared-mime-info wget xdg-user-dirs 0 packages upgraded, 215 newly installed, 0 to remove and 0 not upgraded. Need to get 139 MB of archives. After unpacking 702 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.8-1 [1407 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [1035 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-4 [399 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2 [292 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2 [759 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libtk8.6 amd64 8.6.13-2 [781 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 cython3 amd64 0.29.32-2+b1 [1302 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-2 [131 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 fonts-lyx all 2.3.7-1 [186 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 libsuitesparseconfig5 amd64 1:5.12.0+dfsg-2 [23.9 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 libamd2 amd64 1:5.12.0+dfsg-2 [36.2 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 libblas-dev amd64 3.11.0-2 [158 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-20 [9510 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libbtf1 amd64 1:5.12.0+dfsg-2 [25.6 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libcamd2 amd64 1:5.12.0+dfsg-2 [37.8 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 libccolamd2 amd64 1:5.12.0+dfsg-2 [39.7 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libcolamd2 amd64 1:5.12.0+dfsg-2 [32.9 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libmetis5 amd64 5.1.0.dfsg-7 [171 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 libcholmod3 amd64 1:5.12.0+dfsg-2 [335 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 libcxsparse3 amd64 1:5.12.0+dfsg-2 [80.7 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 libltdl7 amd64 2.4.7-5 [393 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 libglpk40 amd64 5.0-1 [400 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 libgmpxx4ldbl amd64 2:6.2.1+dfsg1-1.1 [338 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 libgmp-dev amd64 2:6.2.1+dfsg1-1.1 [641 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 libklu1 amd64 1:5.12.0+dfsg-2 [87.9 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 libldl2 amd64 1:5.12.0+dfsg-2 [25.2 kB] Get: 96 http://deb.debian.org/debian bookworm/main amd64 libmongoose2 amd64 1:5.12.0+dfsg-2 [47.6 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 libumfpack5 amd64 1:5.12.0+dfsg-2 [245 kB] Get: 98 http://deb.debian.org/debian bookworm/main amd64 librbio2 amd64 1:5.12.0+dfsg-2 [40.8 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 libspqr2 amd64 1:5.12.0+dfsg-2 [82.2 kB] Get: 100 http://deb.debian.org/debian bookworm/main amd64 libsliplu1 amd64 1:5.12.0+dfsg-2 [50.6 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 liblapack-dev amd64 3.11.0-2 [4631 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 libsuitesparse-dev amd64 1:5.12.0+dfsg-2 [983 kB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 libglpk-dev amd64 5.0-1 [470 kB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get: 108 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 109 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 110 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 112 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 113 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [28.9 kB] Get: 114 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get: 115 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get: 116 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-1+b1 [189 kB] Get: 117 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get: 118 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get: 119 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get: 120 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get: 121 http://deb.debian.org/debian bookworm/main amd64 libqhull-r8.0 amd64 2020.2-5 [248 kB] Get: 122 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4.1 [10.6 kB] Get: 123 http://deb.debian.org/debian bookworm/main amd64 libsbml5 amd64 5.19.7+dfsg-2 [2121 kB] Get: 124 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.1 [285 kB] Get: 125 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-5 [316 kB] Get: 126 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.1 [99.2 kB] Get: 127 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.1 [109 kB] Get: 128 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get: 129 http://deb.debian.org/debian bookworm/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get: 130 http://deb.debian.org/debian bookworm/main amd64 python-matplotlib-data all 3.6.3-1 [2744 kB] Get: 131 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get: 132 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get: 133 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get: 134 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get: 135 http://deb.debian.org/debian bookworm/main amd64 python3-idna all 3.3-1 [39.4 kB] Get: 136 http://deb.debian.org/debian bookworm/main amd64 python3-sniffio all 1.2.0-1 [6372 B] Get: 137 http://deb.debian.org/debian bookworm/main amd64 python3-typing-extensions all 4.4.0-1 [45.2 kB] Get: 138 http://deb.debian.org/debian bookworm/main amd64 python3-anyio all 3.6.2-1 [54.0 kB] Get: 139 http://deb.debian.org/debian bookworm/main amd64 python3-appdirs all 1.4.4-3 [13.0 kB] Get: 140 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get: 141 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get: 142 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get: 143 http://deb.debian.org/debian bookworm/main amd64 python3-brotli amd64 1.0.9-2+b6 [281 kB] Get: 144 http://deb.debian.org/debian bookworm/main amd64 python3-certifi all 2022.9.24-1 [153 kB] Get: 145 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 146 http://deb.debian.org/debian bookworm/main amd64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get: 147 http://deb.debian.org/debian bookworm/main amd64 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get: 148 http://deb.debian.org/debian bookworm/main amd64 python3-colorama all 0.4.6-2 [36.8 kB] Get: 149 http://deb.debian.org/debian bookworm/main amd64 python3-click all 8.1.3-2 [92.2 kB] Get: 150 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get: 151 http://deb.debian.org/debian bookworm/main amd64 python3-contourpy amd64 1.0.7-1+b1 [176 kB] Get: 152 http://deb.debian.org/debian bookworm/main amd64 python3-cpuinfo all 5.0.0-5 [19.2 kB] Get: 153 http://deb.debian.org/debian bookworm/main amd64 python3-cycler all 0.11.0-1 [8020 B] Get: 154 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get: 155 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-2 [78.3 kB] Get: 156 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get: 157 http://deb.debian.org/debian bookworm/main amd64 python3-depinfo amd64 2.2.0-1 [11.6 kB] Get: 158 http://deb.debian.org/debian bookworm/main amd64 python3-diskcache all 5.4.0-1 [33.7 kB] Get: 159 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get: 160 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get: 161 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.10.1-2 [15.2 MB] Get: 162 http://deb.debian.org/debian bookworm/main amd64 python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get: 163 http://deb.debian.org/debian bookworm/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get: 164 http://deb.debian.org/debian bookworm/main amd64 python3-sympy all 1.11.1-1 [4358 kB] Get: 165 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7.1-3 [30.1 kB] Get: 166 http://deb.debian.org/debian bookworm/main amd64 python3-fs all 2.4.16-2 [95.2 kB] Get: 167 http://deb.debian.org/debian bookworm/main amd64 python3-lxml amd64 4.9.2-1+b1 [1194 kB] Get: 168 http://deb.debian.org/debian bookworm/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b2 [25.0 kB] Get: 169 http://deb.debian.org/debian bookworm/main amd64 unicode-data all 15.0.0-1 [7984 kB] Get: 170 http://deb.debian.org/debian bookworm/main amd64 python3-fonttools amd64 4.38.0-1+b1 [1012 kB] Get: 171 http://deb.debian.org/debian bookworm/main amd64 python3-future all 0.18.2-6 [348 kB] Get: 172 http://deb.debian.org/debian bookworm/main amd64 python3-h11 all 0.14.0-1 [50.1 kB] Get: 173 http://deb.debian.org/debian bookworm/main amd64 python3-httpcore all 0.16.3-1 [38.4 kB] Get: 174 http://deb.debian.org/debian bookworm/main amd64 python3-pygments all 2.14.0+dfsg-1 [783 kB] Get: 175 http://deb.debian.org/debian bookworm/main amd64 python3-mdurl all 0.1.2-1 [9444 B] Get: 176 http://deb.debian.org/debian bookworm/main amd64 python3-markdown-it all 2.1.0-5 [58.8 kB] Get: 177 http://deb.debian.org/debian bookworm/main amd64 python3-rich all 13.3.1-1 [202 kB] Get: 178 http://deb.debian.org/debian bookworm/main amd64 python3-rfc3986 all 1.5.0-2 [22.2 kB] Get: 179 http://deb.debian.org/debian bookworm/main amd64 python3-httpx all 0.23.3-1 [72.3 kB] Get: 180 http://deb.debian.org/debian bookworm/main amd64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 181 http://deb.debian.org/debian bookworm/main amd64 python3-zipp all 1.0.0-6 [6696 B] Get: 182 http://deb.debian.org/debian bookworm/main amd64 python3-importlib-resources all 5.1.2-2 [19.0 kB] Get: 183 http://deb.debian.org/debian bookworm/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 184 http://deb.debian.org/debian bookworm/main amd64 python3-pyrsistent amd64 0.18.1-1+b3 [60.0 kB] Get: 185 http://deb.debian.org/debian bookworm/main amd64 python3-jsonschema all 4.10.3-1 [67.9 kB] Get: 186 http://deb.debian.org/debian bookworm/main amd64 python3-kiwisolver amd64 1.4.4-1+b1 [60.1 kB] Get: 187 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.4.0-1.1+b1 [472 kB] Get: 188 http://deb.debian.org/debian bookworm/main amd64 python3-tk amd64 3.11.2-2 [98.2 kB] Get: 189 http://deb.debian.org/debian bookworm/main amd64 python3-pil.imagetk amd64 9.4.0-1.1+b1 [74.4 kB] Get: 190 http://deb.debian.org/debian bookworm/main amd64 python3-pyparsing all 3.0.9-1 [138 kB] Get: 191 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get: 192 http://deb.debian.org/debian bookworm/main amd64 python3-matplotlib amd64 3.6.3-1+b1 [6921 kB] Get: 193 http://deb.debian.org/debian bookworm/main amd64 python3-swiglpk amd64 4.65.1-1+b4 [62.6 kB] Get: 194 http://deb.debian.org/debian bookworm/main amd64 python3-optlang all 1.5.2-1 [81.2 kB] Get: 195 http://deb.debian.org/debian bookworm/main amd64 python3-pandas-lib amd64 1.5.3+dfsg-2 [3499 kB] Get: 196 http://deb.debian.org/debian bookworm/main amd64 python3-pandas all 1.5.3+dfsg-2 [2885 kB] Get: 197 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Get: 198 http://deb.debian.org/debian bookworm/main amd64 python3-wheel all 0.38.4-2 [30.8 kB] Get: 199 http://deb.debian.org/debian bookworm/main amd64 python3-pip all 23.0.1+dfsg-1 [1325 kB] Get: 200 http://deb.debian.org/debian bookworm/main amd64 python3-pipdeptree amd64 2.2.0-3 [20.6 kB] Get: 201 http://deb.debian.org/debian bookworm/main amd64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 202 http://deb.debian.org/debian bookworm/main amd64 python3-py all 1.11.0-1 [89.2 kB] Get: 203 http://deb.debian.org/debian bookworm/main amd64 python3-pydantic all 1.10.4-1 [171 kB] Get: 204 http://deb.debian.org/debian bookworm/main amd64 python3-pytest all 7.2.1-2 [236 kB] Get: 205 http://deb.debian.org/debian bookworm/main amd64 python3-pytest-benchmark all 3.2.2-3 [46.4 kB] Get: 206 http://deb.debian.org/debian bookworm/main amd64 python3-pytest-mock all 3.8.2-3 [16.5 kB] Get: 207 http://deb.debian.org/debian bookworm/main amd64 python3-urllib3 all 1.26.12-1 [117 kB] Get: 208 http://deb.debian.org/debian bookworm/main amd64 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get: 209 http://deb.debian.org/debian bookworm/main amd64 python3-ruamel.yaml.clib amd64 0.2.7-1+b2 [113 kB] Get: 210 http://deb.debian.org/debian bookworm/main amd64 python3-ruamel.yaml all 0.17.21-1 [103 kB] Get: 211 http://deb.debian.org/debian bookworm/main amd64 swig4.0 amd64 4.1.0-0.2 [1388 kB] Get: 212 http://deb.debian.org/debian bookworm/main amd64 swig all 4.1.0-0.2 [321 kB] Get: 213 http://deb.debian.org/debian bookworm/main amd64 python3-sbml5 amd64 5.19.7+dfsg-2 [3472 kB] Get: 214 http://deb.debian.org/debian bookworm/main amd64 python3-simplejson amd64 3.18.3-1 [59.8 kB] Get: 215 http://deb.debian.org/debian bookworm/main amd64 python3-tabulate all 0.8.9-1 [35.2 kB] Fetched 139 MB in 3s (41.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. 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Setting up python3-scipy (1.10.1-2) ... Setting up python3-pil:amd64 (9.4.0-1.1+b1) ... Setting up python3-pil.imagetk:amd64 (9.4.0-1.1+b1) ... Setting up python3-ufolib2 (0.14.0+dfsg1-1) ... Setting up python3-fonttools (4.38.0-1+b1) ... Setting up python3-matplotlib (3.6.3-1+b1) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-cobra-0.26.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cobra_0.26.2-1_source.changes dpkg-buildpackage: info: source package python-cobra dpkg-buildpackage: info: source version 0.26.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-cobra-0.26.2' dh_auto_clean I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -f cobra/solvers/cglpk.c rm -rf .pytest_cache make[1]: Leaving directory '/build/python-cobra-0.26.2' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra copying src/cobra/exceptions.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra copying src/cobra/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/util.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/solver.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/process_pool.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/context.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/array.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary copying src/cobra/summary/summary.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary copying src/cobra/summary/reaction_summary.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary copying src/cobra/summary/model_summary.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary copying src/cobra/summary/metabolite_summary.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary copying src/cobra/summary/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/sampling.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/optgp.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/hr_sampler.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/core.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/achr.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium copying src/cobra/medium/minimal_medium.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium copying src/cobra/medium/boundary_types.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium copying src/cobra/medium/annotations.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium copying src/cobra/medium/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation copying src/cobra/manipulation/validate.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation copying src/cobra/manipulation/modify.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation copying src/cobra/manipulation/delete.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation copying src/cobra/manipulation/annotate.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation copying src/cobra/manipulation/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/dict.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/sbml.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/yaml.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/mat.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/json.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/variability.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/room.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/reaction.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/parsimonious.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/moma.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/loopless.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/helpers.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/geometric.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/gapfilling.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/fastcc.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/deletion.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/species.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/solution.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/singleton.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/reaction.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/object.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/model.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/metabolite.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/group.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/gene.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/formula.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/dictlist.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/configuration.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core creating /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/load.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/cobrapy_repository.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/biomodels_repository.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/bigg_models_repository.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/abstract_model_repository.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/__init__.py -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/data/textbook.xml.gz -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/salmonella.xml.gz -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/mini_cobra.xml -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/mini.yml -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/mini.mat -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/mini.json -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/iJO1366.xml.gz -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/io/schema_v1.json -> /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io dh_auto_test -O--buildsystem=pybuild I: pybuild base:240: cd /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build; python3.11 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack benchmark: 3.2.2 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000) rootdir: /build/python-cobra-0.26.2, configfile: tox.ini plugins: mock-3.8.2, benchmark-3.2.2, anyio-3.6.2 collected 549 items tests/test_core/test_configuration.py ...... [ 1%] tests/test_core/test_core_reaction.py ..........ss...................... [ 7%] ...................x...... [ 12%] tests/test_core/test_dictlist.py ...................... [ 16%] tests/test_core/test_formula.py ..... [ 16%] tests/test_core/test_gene.py . [ 17%] tests/test_core/test_gpr.py .....................x..x................... [ 25%] .......................... [ 29%] tests/test_core/test_group.py .. [ 30%] tests/test_core/test_metabolite.py ...ss.ss. [ 31%] tests/test_core/test_model.py .......................................... [ 39%] ...........s..s.ss. [ 42%] tests/test_core/test_solution.py .ss [ 43%] tests/test_flux_analysis/test_deletion.py ....s..... [ 45%] tests/test_flux_analysis/test_fastcc.py .... [ 46%] tests/test_flux_analysis/test_geometric.py .. [ 46%] tests/test_flux_analysis/test_moma.py . [ 46%] tests/test_flux_analysis/test_parsimonious.py .. [ 46%] tests/test_flux_analysis/test_reaction.py . [ 47%] tests/test_flux_analysis/test_room.py .... [ 47%] tests/test_flux_analysis/test_variability.py ....... [ 49%] tests/test_flux_analysis/test_deletion.py sss [ 49%] tests/test_flux_analysis/test_moma.py s [ 49%] tests/test_flux_analysis/test_deletion.py ...... [ 51%] tests/test_flux_analysis/test_gapfilling.py . [ 51%] tests/test_flux_analysis/test_helpers.py ... [ 51%] tests/test_flux_analysis/test_loopless.py ..... [ 52%] tests/test_flux_analysis/test_phenotype_phase_plane.py ...... [ 53%] tests/test_flux_analysis/test_variability.py ....... [ 55%] tests/test_io/test_annotation.py .. [ 55%] tests/test_io/test_annotation_format.py .. [ 55%] tests/test_io/test_io_order.py ........................... [ 60%] tests/test_io/test_json.py .... [ 61%] tests/test_io/test_mat.py ............... [ 64%] tests/test_io/test_notes.py . [ 64%] tests/test_io/test_pickle.py .. [ 64%] tests/test_io/test_sbml.py .ssss............xxxx.x.x..s............ [ 71%] tests/test_io/test_yaml.py .x [ 72%] tests/test_io/test_web/test_load.py ..ssss. [ 73%] tests/test_manipulation/test_annotate.py . [ 73%] tests/test_manipulation/test_delete.py ....... [ 75%] tests/test_manipulation/test_modify.py ... [ 75%] tests/test_manipulation/test_validate.py .. [ 75%] tests/test_medium/test_boundary_types.py ......... [ 77%] tests/test_medium/test_minimal_medium.py .......... [ 79%] tests/test_sampling/test_achr.py ...... [ 80%] tests/test_sampling/test_optgp.py ...... [ 81%] tests/test_sampling/test_sampling.py .......... [ 83%] tests/test_summary/test_metabolite_summary.py ................. [ 86%] tests/test_summary/test_model_summary.py ............... [ 89%] tests/test_summary/test_reaction_summary.py .................... [ 92%] tests/test_util/test_array.py .. [ 93%] tests/test_util/test_context.py ... [ 93%] tests/test_util/test_process_pool.py ............... [ 96%] tests/test_util/test_solver.py ..............s [ 99%] tests/test_util/test_util.py ...x [100%] =============================== warnings summary =============================== ../../../../../usr/lib/python3/dist-packages/importlib_resources/_py3.py:13 ../../../../../usr/lib/python3/dist-packages/importlib_resources/_py3.py:13 /usr/lib/python3/dist-packages/importlib_resources/_py3.py:13: DeprecationWarning: typing.io is deprecated, import directly from typing instead. typing.io will be removed in Python 3.12. from typing.io import BinaryIO, TextIO .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_and_gpr[a AND b-2-gpr_genes2-a and b] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_and_b_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a AND b'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_or_gpr[a OR b-2-gpr_genes2-a or b] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_as_symbolic_boolean[a OR b-symbolic_gpr2] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_or_b_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_from_symbolic[a OR b-symbolic_gpr5] /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a OR b'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_complicated_gpr[(a OR b) AND c] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_as_symbolic_boolean[(a OR b) AND c-symbolic_gpr6] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_or_and_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists8] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists9] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_from_symbolic[(a OR b) AND c-symbolic_gpr9] /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule '(a OR b) AND c'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_that_needs_two_replacements /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule '(591001.3.peg.1891 AND 591001.3.peg.1892 AND 591001.3.peg.1893)'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_and_b_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'b AND a'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_or_b_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'b OR a'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_or_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists7] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists8] /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a OR b or c'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_and_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists7] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists9] /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a AND b and c'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_reaction_delete .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_reaction_delete /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/reaction.py:879: DeprecationWarning: delete is deprecated. Use reaction.remove_from_model instead warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_group_loss_of_elements .pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_gapfilling.py::test_gapfilling /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/group.py:147: UserWarning: need to pass in a list warn("need to pass in a list") .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_change_objective .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_change_objective .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_change_objective /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/reaction.py:761: DeprecationWarning: Please use reaction.flux instead. warn("Please use reaction.flux instead.", DeprecationWarning) .pybuild/cpython3_3.11_cobra/build/tests/test_io/test_json.py: 6 warnings .pybuild/cpython3_3.11_cobra/build/tests/test_io/test_mat.py: 14 warnings .pybuild/cpython3_3.11_cobra/build/tests/test_io/test_pickle.py: 2 warnings .pybuild/cpython3_3.11_cobra/build/tests/test_io/test_sbml.py: 18 warnings .pybuild/cpython3_3.11_cobra/build/tests/test_io/test_yaml.py: 2 warnings /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/solver.py:554: UserWarning: Solver status is 'infeasible'. warn(f"Solver status is '{status}'.", UserWarning) .pybuild/cpython3_3.11_cobra/build/tests/test_medium/test_minimal_medium.py: 65 warnings /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium/minimal_medium.py:112: FutureWarning: The default dtype for empty Series will be 'object' instead of 'float64' in a future version. Specify a dtype explicitly to silence this warning. medium = pd.Series() .pybuild/cpython3_3.11_cobra/build/tests/test_util/test_process_pool.py::test_with_context /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/process_pool.py:72: PytestMockWarning: Mocks returned by pytest-mock do not need to be used as context managers. The mocker fixture automatically undoes mocking at the end of a test. This warning can be ignored if it was triggered by mocking a context manager. https://github.com/pytest-dev/pytest-mock#note-about-usage-as-context-manager self._pool.__enter__() .pybuild/cpython3_3.11_cobra/build/tests/test_util/test_util.py::test_show_versions /usr/lib/python3/dist-packages/depinfo/application/compatibility.py:26: DeprecationWarning: The function 'print_dependencies' is deprecated since version 2.0.0. Please use either the command line interface with command 'depinfo' or import 'depinfo.application.DisplayApplication' in your Python project. warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html Computing stats ... Computing stats ... group 1/1 Computing stats ... group 1/1: min Computing stats ... group 1/1: min (1/31) Computing stats ... group 1/1: min (2/31) Computing stats ... group 1/1: min (3/31) Computing stats ... group 1/1: min (4/31) Computing stats ... group 1/1: min (5/31) Computing stats ... group 1/1: min (6/31) Computing stats ... group 1/1: min (7/31) Computing stats ... group 1/1: min (8/31) Computing stats ... group 1/1: min (9/31) Computing stats ... group 1/1: min (10/31) Computing stats ... group 1/1: min (11/31) Computing stats ... group 1/1: min (12/31) Computing stats ... group 1/1: min (13/31) Computing stats ... group 1/1: min (14/31) Computing stats ... group 1/1: min (15/31) Computing stats ... group 1/1: min (16/31) Computing stats ... group 1/1: min (17/31) Computing stats ... group 1/1: min (18/31) Computing stats ... group 1/1: min (19/31) Computing stats ... group 1/1: min (20/31) Computing stats ... group 1/1: min (21/31) Computing stats ... group 1/1: min 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stats ... group 1/1: min (15/31) Computing stats ... group 1/1: min (16/31) Computing stats ... group 1/1: min (17/31) Computing stats ... group 1/1: min (18/31) Computing stats ... group 1/1: min (19/31) Computing stats ... group 1/1: min (20/31) Computing stats ... group 1/1: min (21/31) Computing stats ... group 1/1: min (22/31) Computing stats ... group 1/1: min (23/31) Computing stats ... group 1/1: min (24/31) Computing stats ... group 1/1: min (25/31) Computing stats ... group 1/1: min (26/31) Computing stats ... group 1/1: min (27/31) Computing stats ... group 1/1: min (28/31) Computing stats ... group 1/1: min (29/31) Computing stats ... group 1/1: min (30/31) Computing stats ... group 1/1: min (31/31) Computing stats ... group 1/1: max Computing stats ... group 1/1: max (1/31) Computing stats ... group 1/1: max (2/31) Computing stats ... group 1/1: max (3/31) Computing stats ... group 1/1: max (4/31) Computing stats ... group 1/1: max (5/31) Computing stats ... group 1/1: max 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Computing stats ... group 1/1: max (30/31) Computing stats ... group 1/1: max (31/31) Computing stats ... group 1/1: max (1/31) Computing stats ... group 1/1: max (2/31) Computing stats ... group 1/1: max (3/31) Computing stats ... group 1/1: max (4/31) Computing stats ... group 1/1: max (5/31) Computing stats ... group 1/1: max (6/31) Computing stats ... group 1/1: max (7/31) Computing stats ... group 1/1: max (8/31) Computing stats ... group 1/1: max (9/31) Computing stats ... group 1/1: max (10/31) Computing stats ... group 1/1: max (11/31) Computing stats ... group 1/1: max (12/31) Computing stats ... group 1/1: max (13/31) Computing stats ... group 1/1: max (14/31) Computing stats ... group 1/1: max (15/31) Computing stats ... group 1/1: max (16/31) Computing stats ... group 1/1: max (17/31) Computing stats ... group 1/1: max (18/31) Computing stats ... group 1/1: max (19/31) Computing stats ... group 1/1: max (20/31) Computing stats ... group 1/1: max (21/31) Computing stats ... 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(13/31) Computing stats ... group 1/1: mean (14/31) Computing stats ... group 1/1: mean (15/31) Computing stats ... group 1/1: mean (16/31) Computing stats ... group 1/1: mean (17/31) Computing stats ... group 1/1: mean (18/31) Computing stats ... group 1/1: mean (19/31) Computing stats ... group 1/1: mean (20/31) Computing stats ... group 1/1: mean (21/31) Computing stats ... group 1/1: mean (22/31) Computing stats ... group 1/1: mean (23/31) Computing stats ... group 1/1: mean (24/31) Computing stats ... group 1/1: mean (25/31) Computing stats ... group 1/1: mean (26/31) Computing stats ... group 1/1: mean (27/31) Computing stats ... group 1/1: mean (28/31) Computing stats ... group 1/1: mean (29/31) Computing stats ... group 1/1: mean (30/31) Computing stats ... group 1/1: mean (31/31) Computing stats ... group 1/1: mean (1/31) Computing stats ... group 1/1: mean (2/31) Computing stats ... group 1/1: mean (3/31) Computing stats ... group 1/1: mean (4/31) Computing stats ... group 1/1: mean (5/31) Computing stats ... group 1/1: mean (6/31) Computing stats ... group 1/1: mean (7/31) Computing stats ... group 1/1: mean (8/31) Computing stats ... group 1/1: mean (9/31) Computing stats ... group 1/1: mean (10/31) Computing stats ... group 1/1: mean (11/31) Computing stats ... group 1/1: mean (12/31) Computing stats ... group 1/1: mean (13/31) Computing stats ... group 1/1: mean (14/31) Computing stats ... group 1/1: mean (15/31) Computing stats ... group 1/1: mean (16/31) Computing stats ... group 1/1: mean (17/31) Computing stats ... group 1/1: mean (18/31) Computing stats ... group 1/1: mean (19/31) Computing stats ... group 1/1: mean (20/31) Computing stats ... group 1/1: mean (21/31) Computing stats ... group 1/1: mean (22/31) Computing stats ... group 1/1: mean (23/31) Computing stats ... group 1/1: mean (24/31) Computing stats ... group 1/1: mean (25/31) Computing stats ... group 1/1: mean (26/31) Computing stats ... group 1/1: mean (27/31) Computing stats ... group 1/1: mean (28/31) Computing stats ... group 1/1: mean (29/31) Computing stats ... group 1/1: mean (30/31) Computing stats ... group 1/1: mean (31/31) Computing stats ... group 1/1: median Computing stats ... group 1/1: median (1/31) Computing stats ... group 1/1: median (2/31) Computing stats ... group 1/1: median (3/31) Computing stats ... group 1/1: median (4/31) Computing stats ... group 1/1: median (5/31) Computing stats ... group 1/1: median (6/31) Computing stats ... group 1/1: median (7/31) Computing stats ... group 1/1: median (8/31) Computing stats ... group 1/1: median (9/31) Computing stats ... group 1/1: median (10/31) Computing stats ... group 1/1: median (11/31) Computing stats ... group 1/1: median (12/31) Computing stats ... group 1/1: median (13/31) Computing stats ... group 1/1: median (14/31) Computing stats ... group 1/1: median (15/31) Computing stats ... group 1/1: median (16/31) Computing stats ... group 1/1: median (17/31) Computing stats ... group 1/1: median (18/31) Computing stats ... group 1/1: median (19/31) Computing stats ... group 1/1: median (20/31) Computing stats ... group 1/1: median (21/31) Computing stats ... group 1/1: median (22/31) Computing stats ... group 1/1: median (23/31) Computing stats ... group 1/1: median (24/31) Computing stats ... group 1/1: median (25/31) Computing stats ... group 1/1: median (26/31) Computing stats ... group 1/1: median (27/31) Computing stats ... group 1/1: median (28/31) Computing stats ... group 1/1: median (29/31) Computing stats ... group 1/1: median (30/31) Computing stats ... group 1/1: median (31/31) Computing stats ... group 1/1: median (1/31) Computing stats ... group 1/1: median (2/31) Computing stats ... group 1/1: median (3/31) Computing stats ... group 1/1: median (4/31) Computing stats ... group 1/1: median (5/31) Computing stats ... group 1/1: median (6/31) Computing stats ... group 1/1: median (7/31) Computing stats ... group 1/1: median (8/31) Computing stats ... group 1/1: median (9/31) Computing stats ... group 1/1: median (10/31) Computing stats ... group 1/1: median (11/31) Computing stats ... group 1/1: median (12/31) Computing stats ... group 1/1: median (13/31) Computing stats ... group 1/1: median (14/31) Computing stats ... group 1/1: median (15/31) Computing stats ... group 1/1: median (16/31) Computing stats ... group 1/1: median (17/31) Computing stats ... group 1/1: median (18/31) Computing stats ... group 1/1: median (19/31) Computing stats ... group 1/1: median (20/31) Computing stats ... group 1/1: median (21/31) Computing stats ... group 1/1: median (22/31) Computing stats ... group 1/1: median (23/31) Computing stats ... group 1/1: median (24/31) Computing stats ... group 1/1: median (25/31) Computing stats ... group 1/1: median (26/31) Computing stats ... group 1/1: median (27/31) Computing stats ... group 1/1: median (28/31) Computing stats ... group 1/1: median (29/31) Computing stats ... group 1/1: median (30/31) Computing stats ... group 1/1: median (31/31) Computing stats ... group 1/1: iqr Computing stats ... group 1/1: iqr (1/31) Computing stats ... group 1/1: iqr (2/31) Computing stats ... group 1/1: iqr (3/31) Computing stats ... group 1/1: iqr (4/31) Computing stats ... group 1/1: iqr (5/31) Computing stats ... group 1/1: iqr (6/31) Computing stats ... group 1/1: iqr (7/31) Computing stats ... group 1/1: iqr (8/31) Computing stats ... group 1/1: iqr (9/31) Computing stats ... group 1/1: iqr (10/31) Computing stats ... group 1/1: iqr (11/31) Computing stats ... group 1/1: iqr (12/31) Computing stats ... group 1/1: iqr (13/31) Computing stats ... group 1/1: iqr (14/31) Computing stats ... group 1/1: iqr (15/31) Computing stats ... group 1/1: iqr (16/31) Computing stats ... group 1/1: iqr (17/31) Computing stats ... group 1/1: iqr (18/31) Computing stats ... group 1/1: iqr (19/31) Computing stats ... group 1/1: iqr (20/31) Computing stats ... group 1/1: iqr (21/31) Computing stats ... group 1/1: iqr (22/31) Computing stats ... group 1/1: iqr (23/31) Computing stats ... group 1/1: iqr (24/31) Computing stats ... group 1/1: iqr (25/31) Computing stats ... group 1/1: iqr (26/31) Computing stats ... group 1/1: iqr (27/31) Computing stats ... group 1/1: iqr (28/31) Computing stats ... group 1/1: iqr (29/31) Computing stats ... group 1/1: iqr (30/31) Computing stats ... group 1/1: iqr (31/31) Computing stats ... group 1/1: iqr (1/31) Computing stats ... group 1/1: iqr (2/31) Computing stats ... group 1/1: iqr (3/31) Computing stats ... group 1/1: iqr (4/31) Computing stats ... group 1/1: iqr (5/31) Computing stats ... group 1/1: iqr (6/31) Computing stats ... group 1/1: iqr (7/31) Computing stats ... group 1/1: iqr (8/31) Computing stats ... group 1/1: iqr (9/31) Computing stats ... group 1/1: iqr (10/31) Computing stats ... group 1/1: iqr (11/31) Computing stats ... group 1/1: iqr (12/31) Computing stats ... group 1/1: iqr (13/31) Computing stats ... group 1/1: iqr (14/31) Computing stats ... group 1/1: iqr (15/31) Computing stats ... group 1/1: iqr (16/31) Computing stats ... group 1/1: iqr (17/31) Computing stats ... group 1/1: iqr (18/31) Computing stats ... group 1/1: iqr (19/31) Computing stats ... group 1/1: iqr (20/31) Computing stats ... group 1/1: iqr (21/31) Computing stats ... group 1/1: iqr (22/31) Computing stats ... group 1/1: iqr (23/31) Computing stats ... group 1/1: iqr (24/31) Computing stats ... group 1/1: iqr (25/31) Computing stats ... group 1/1: iqr (26/31) Computing stats ... group 1/1: iqr (27/31) Computing stats ... group 1/1: iqr (28/31) Computing stats ... group 1/1: iqr (29/31) Computing stats ... group 1/1: iqr (30/31) Computing stats ... group 1/1: iqr (31/31) Computing stats ... group 1/1: stddev Computing stats ... group 1/1: stddev (1/31) Computing stats ... group 1/1: stddev (2/31) Computing stats ... group 1/1: stddev (3/31) Computing stats ... group 1/1: stddev (4/31) Computing stats ... group 1/1: stddev (5/31) Computing stats ... group 1/1: stddev (6/31) Computing stats ... group 1/1: stddev (7/31) Computing stats ... group 1/1: stddev (8/31) Computing stats ... group 1/1: stddev (9/31) Computing stats ... group 1/1: stddev (10/31) Computing stats ... group 1/1: stddev (11/31) Computing stats ... group 1/1: stddev (12/31) Computing stats ... group 1/1: stddev (13/31) Computing stats ... group 1/1: stddev (14/31) Computing stats ... group 1/1: stddev (15/31) Computing stats ... group 1/1: stddev (16/31) Computing stats ... group 1/1: stddev (17/31) Computing stats ... group 1/1: stddev (18/31) Computing stats ... group 1/1: stddev (19/31) Computing stats ... group 1/1: stddev (20/31) Computing stats ... group 1/1: stddev (21/31) Computing stats ... group 1/1: stddev (22/31) Computing stats ... group 1/1: stddev (23/31) Computing stats ... group 1/1: stddev (24/31) Computing stats ... group 1/1: stddev (25/31) Computing stats ... group 1/1: stddev (26/31) Computing stats ... group 1/1: stddev (27/31) Computing stats ... group 1/1: stddev (28/31) Computing stats ... group 1/1: stddev (29/31) Computing stats ... group 1/1: stddev (30/31) Computing stats ... group 1/1: stddev (31/31) Computing stats ... group 1/1: stddev (1/31) Computing stats ... group 1/1: stddev (2/31) Computing stats ... group 1/1: stddev (3/31) Computing stats ... group 1/1: stddev (4/31) Computing stats ... group 1/1: stddev (5/31) Computing stats ... group 1/1: stddev (6/31) Computing stats ... group 1/1: stddev (7/31) Computing stats ... group 1/1: stddev (8/31) Computing stats ... group 1/1: stddev (9/31) Computing stats ... group 1/1: stddev (10/31) Computing stats ... group 1/1: stddev (11/31) Computing stats ... group 1/1: stddev (12/31) Computing stats ... group 1/1: stddev (13/31) Computing stats ... group 1/1: stddev (14/31) Computing stats ... group 1/1: stddev (15/31) Computing stats ... group 1/1: stddev (16/31) Computing stats ... group 1/1: stddev (17/31) Computing stats ... group 1/1: stddev (18/31) Computing stats ... group 1/1: stddev (19/31) Computing stats ... group 1/1: stddev (20/31) Computing stats ... group 1/1: stddev (21/31) Computing stats ... group 1/1: stddev (22/31) Computing stats ... group 1/1: stddev (23/31) Computing stats ... group 1/1: stddev (24/31) Computing stats ... group 1/1: stddev (25/31) Computing stats ... group 1/1: stddev (26/31) Computing stats ... group 1/1: stddev (27/31) Computing stats ... group 1/1: stddev (28/31) Computing stats ... group 1/1: stddev (29/31) Computing stats ... group 1/1: stddev (30/31) Computing stats ... group 1/1: stddev (31/31) Computing stats ... group 1/1: ops Computing stats ... group 1/1: ops (1/31) Computing stats ... group 1/1: ops (2/31) Computing stats ... group 1/1: ops (3/31) Computing stats ... group 1/1: ops (4/31) Computing stats ... group 1/1: ops (5/31) Computing stats ... group 1/1: ops (6/31) Computing stats ... group 1/1: ops (7/31) Computing stats ... group 1/1: ops (8/31) Computing stats ... group 1/1: ops (9/31) Computing stats ... group 1/1: ops (10/31) Computing stats ... group 1/1: ops (11/31) Computing stats ... group 1/1: ops (12/31) Computing stats ... group 1/1: ops (13/31) Computing stats ... group 1/1: ops (14/31) Computing stats ... group 1/1: ops (15/31) Computing stats ... group 1/1: ops (16/31) Computing stats ... group 1/1: ops (17/31) Computing stats ... group 1/1: ops (18/31) Computing stats ... group 1/1: ops (19/31) Computing stats ... group 1/1: ops (20/31) Computing stats ... group 1/1: ops (21/31) Computing stats ... group 1/1: ops (22/31) Computing stats ... group 1/1: ops (23/31) Computing stats ... group 1/1: ops (24/31) Computing stats ... group 1/1: ops (25/31) Computing stats ... group 1/1: ops (26/31) Computing stats ... group 1/1: ops (27/31) Computing stats ... group 1/1: ops (28/31) Computing stats ... group 1/1: ops (29/31) Computing stats ... group 1/1: ops (30/31) Computing stats ... group 1/1: ops (31/31) Computing stats ... group 1/1: ops (1/31) Computing stats ... group 1/1: ops (2/31) Computing stats ... group 1/1: ops (3/31) Computing stats ... group 1/1: ops (4/31) Computing stats ... group 1/1: ops (5/31) Computing stats ... group 1/1: ops (6/31) Computing stats ... group 1/1: ops (7/31) Computing stats ... group 1/1: ops (8/31) Computing stats ... group 1/1: ops (9/31) Computing stats ... group 1/1: ops (10/31) Computing stats ... group 1/1: ops (11/31) Computing stats ... group 1/1: ops (12/31) Computing stats ... group 1/1: ops (13/31) Computing stats ... group 1/1: ops (14/31) Computing stats ... group 1/1: ops (15/31) Computing stats ... group 1/1: ops (16/31) Computing stats ... group 1/1: ops (17/31) Computing stats ... group 1/1: ops (18/31) Computing stats ... group 1/1: ops (19/31) Computing stats ... group 1/1: ops (20/31) Computing stats ... group 1/1: ops (21/31) Computing stats ... group 1/1: ops (22/31) Computing stats ... group 1/1: ops (23/31) Computing stats ... group 1/1: ops (24/31) Computing stats ... group 1/1: ops (25/31) Computing stats ... group 1/1: ops (26/31) Computing stats ... group 1/1: ops (27/31) Computing stats ... group 1/1: ops (28/31) Computing stats ... group 1/1: ops (29/31) Computing stats ... group 1/1: ops (30/31) Computing stats ... group 1/1: ops (31/31) Computing stats ... group 1/1: ops: outliers Computing stats ... group 1/1: ops: outliers (1/31) Computing stats ... group 1/1: ops: outliers (2/31) Computing stats ... group 1/1: ops: outliers (3/31) Computing stats ... group 1/1: ops: outliers (4/31) Computing stats ... group 1/1: ops: outliers (5/31) Computing stats ... group 1/1: ops: outliers (6/31) Computing stats ... group 1/1: ops: outliers (7/31) Computing stats ... group 1/1: ops: outliers (8/31) Computing stats ... group 1/1: ops: outliers (9/31) Computing stats ... group 1/1: ops: outliers (10/31) Computing stats ... group 1/1: ops: outliers (11/31) Computing stats ... group 1/1: ops: outliers (12/31) Computing stats ... group 1/1: ops: outliers (13/31) Computing stats ... group 1/1: ops: outliers (14/31) Computing stats ... group 1/1: ops: outliers (15/31) Computing stats ... group 1/1: ops: outliers (16/31) Computing stats ... group 1/1: ops: outliers (17/31) Computing stats ... group 1/1: ops: outliers (18/31) Computing stats ... group 1/1: ops: outliers (19/31) Computing stats ... group 1/1: ops: outliers (20/31) Computing stats ... group 1/1: ops: outliers (21/31) Computing stats ... group 1/1: ops: outliers (22/31) Computing stats ... group 1/1: ops: outliers (23/31) Computing stats ... group 1/1: ops: outliers (24/31) Computing stats ... group 1/1: ops: outliers (25/31) Computing stats ... group 1/1: ops: outliers (26/31) Computing stats ... group 1/1: ops: outliers (27/31) Computing stats ... group 1/1: ops: outliers (28/31) Computing stats ... group 1/1: ops: outliers (29/31) Computing stats ... group 1/1: ops: outliers (30/31) Computing stats ... group 1/1: ops: outliers (31/31) Computing stats ... group 1/1: ops: rounds Computing stats ... group 1/1: ops: rounds (1/31) Computing stats ... group 1/1: ops: rounds (2/31) Computing stats ... group 1/1: ops: rounds (3/31) Computing stats ... group 1/1: ops: rounds (4/31) Computing stats ... group 1/1: ops: rounds (5/31) Computing stats ... group 1/1: ops: rounds (6/31) Computing stats ... group 1/1: ops: rounds (7/31) Computing stats ... group 1/1: ops: rounds (8/31) Computing stats ... group 1/1: ops: rounds (9/31) Computing stats ... group 1/1: ops: rounds (10/31) Computing stats ... group 1/1: ops: rounds (11/31) Computing stats ... group 1/1: ops: rounds (12/31) Computing stats ... group 1/1: ops: rounds (13/31) Computing stats ... group 1/1: ops: rounds (14/31) Computing stats ... group 1/1: ops: rounds (15/31) Computing stats ... group 1/1: ops: rounds (16/31) Computing stats ... group 1/1: ops: rounds (17/31) Computing stats ... group 1/1: ops: rounds (18/31) Computing stats ... group 1/1: ops: rounds (19/31) Computing stats ... group 1/1: ops: rounds (20/31) Computing stats ... group 1/1: ops: rounds (21/31) Computing stats ... group 1/1: ops: rounds (22/31) Computing stats ... group 1/1: ops: rounds (23/31) Computing stats ... group 1/1: ops: rounds (24/31) Computing stats ... group 1/1: ops: rounds (25/31) Computing stats ... group 1/1: ops: rounds (26/31) Computing stats ... group 1/1: ops: rounds (27/31) Computing stats ... group 1/1: ops: rounds (28/31) Computing stats ... group 1/1: ops: rounds (29/31) Computing stats ... group 1/1: ops: rounds (30/31) Computing stats ... group 1/1: ops: rounds (31/31) Computing stats ... group 1/1: ops: iterations Computing stats ... group 1/1: ops: iterations (1/31) Computing stats ... group 1/1: ops: iterations (2/31) Computing stats ... group 1/1: ops: iterations (3/31) Computing stats ... group 1/1: ops: iterations (4/31) Computing stats ... group 1/1: ops: iterations (5/31) Computing stats ... group 1/1: ops: iterations (6/31) Computing stats ... group 1/1: ops: iterations (7/31) Computing stats ... group 1/1: ops: iterations (8/31) Computing stats ... group 1/1: ops: iterations (9/31) Computing stats ... group 1/1: ops: iterations (10/31) Computing stats ... group 1/1: ops: iterations (11/31) Computing stats ... group 1/1: ops: iterations (12/31) Computing stats ... group 1/1: ops: iterations (13/31) Computing stats ... group 1/1: ops: iterations (14/31) Computing stats ... group 1/1: ops: iterations (15/31) Computing stats ... group 1/1: ops: iterations (16/31) Computing stats ... group 1/1: ops: iterations (17/31) Computing stats ... group 1/1: ops: iterations (18/31) Computing stats ... group 1/1: ops: iterations (19/31) Computing stats ... group 1/1: ops: iterations (20/31) Computing stats ... group 1/1: ops: iterations (21/31) Computing stats ... group 1/1: ops: iterations (22/31) Computing stats ... group 1/1: ops: iterations (23/31) Computing stats ... group 1/1: ops: iterations (24/31) Computing stats ... group 1/1: ops: iterations (25/31) Computing stats ... group 1/1: ops: iterations (26/31) Computing stats ... group 1/1: ops: iterations (27/31) Computing stats ... group 1/1: ops: iterations (28/31) Computing stats ... group 1/1: ops: iterations (29/31) Computing stats ... group 1/1: ops: iterations (30/31) Computing stats ... group 1/1: ops: iterations (31/31) ------------------------------------------------------------------------------------------------------------------------ benchmark: 31 tests ------------------------------------------------------------------------------------------------------------------------ Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- test_subtract_metabolite_benchmark[gurobi] 10.6459 (1.0) 183.9109 (1.0) 12.4456 (1.09) 5.2681 (1.11) 11.1735 (1.0) 0.4675 (2.72) 177;321 80,349.6988 (0.91) 2344 1 test_subtract_metabolite_benchmark[cplex] 10.8490 (1.02) 235.8290 (1.28) 11.3828 (1.0) 4.7770 (1.01) 11.1940 (1.00) 0.1719 (1.0) 11;66 87,851.6328 (1.0) 2542 1 test_subtract_metabolite_benchmark[glpk] 11.2300 (1.05) 224.4570 (1.22) 11.8350 (1.04) 4.7499 (1.0) 11.6240 (1.04) 0.1860 (1.08) 12;63 84,495.3653 (0.96) 2441 1 test_change_objective_benchmark[optlang-glpk] 584.2571 (54.88) 1,683.8540 (9.16) 606.3478 (53.27) 34.1490 (7.19) 596.6280 (53.40) 11.4230 (66.43) 233;362 1,649.2185 (0.02) 2172 1 test_achr_sample_benchmark 618.5190 (58.10) 1,011.1671 (5.50) 797.8611 (70.09) 68.3465 (14.39) 794.8940 (71.14) 99.9330 (581.19) 203;5 1,253.3510 (0.01) 562 1 test_optgp_sample_benchmark 940.6850 (88.36) 9,395.0620 (51.08) 1,213.6816 (106.62) 451.9559 (95.15) 1,177.3530 (105.37) 147.8505 (859.87) 6;9 823.9393 (0.01) 580 1 test_loopless_benchmark_after 3,077.9690 (289.12) 12,849.3321 (69.87) 5,246.7915 (460.94) 1,521.3608 (320.30) 5,074.7285 (454.18) 580.3610 (>1000.0) 11;11 190.5927 (0.00) 98 1 test_loopless_benchmark_before 20,923.5770 (>1000.0) 47,807.5281 (259.95) 26,048.2324 (>1000.0) 8,467.9269 (>1000.0) 21,625.2185 (>1000.0) 5,029.5815 (>1000.0) 6;6 38.3903 (0.00) 32 1 test_minimal_medium_mip_benchmark 21,291.9229 (>1000.0) 24,597.5271 (133.75) 22,862.1213 (>1000.0) 1,114.2860 (234.59) 22,481.4040 (>1000.0) 2,205.5702 (>1000.0) 11;0 43.7405 (0.00) 25 1 test_minimal_medium_linear_benchmark 22,059.7510 (>1000.0) 25,651.8980 (139.48) 23,743.8679 (>1000.0) 1,021.5817 (215.08) 23,439.7700 (>1000.0) 1,519.5120 (>1000.0) 9;0 42.1161 (0.00) 25 1 test_single_reaction_deletion_benchmark[glpk] 41,054.4670 (>1000.0) 49,340.4029 (268.28) 45,062.3080 (>1000.0) 2,001.5094 (421.38) 44,884.9340 (>1000.0) 2,680.6151 (>1000.0) 6;0 22.1915 (0.00) 21 1 test_copy_benchmark[optlang-glpk] 50,899.0630 (>1000.0) 55,196.0530 (300.12) 52,875.2280 (>1000.0) 1,443.7934 (303.96) 52,798.3210 (>1000.0) 2,791.9260 (>1000.0) 9;0 18.9124 (0.00) 19 1 test_gpr_equality_benchmark 71,465.5380 (>1000.0) 72,132.9639 (392.22) 71,812.8478 (>1000.0) 240.8082 (50.70) 71,754.9620 (>1000.0) 439.2205 (>1000.0) 5;0 13.9251 (0.00) 12 1 test_deepcopy_benchmark 73,335.6039 (>1000.0) 80,307.3560 (436.66) 76,048.5524 (>1000.0) 1,999.2449 (420.90) 75,967.1360 (>1000.0) 1,998.4830 (>1000.0) 4;2 13.1495 (0.00) 14 1 test_add_metabolite_benchmark[gurobi] 187,252.8050 (>1000.0) 193,839.7770 (>1000.0) 188,862.6687 (>1000.0) 2,495.5164 (525.39) 188,083.4715 (>1000.0) 1,276.3251 (>1000.0) 1;1 5.2949 (0.00) 6 1 test_add_metabolite_benchmark[cplex] 187,384.6289 (>1000.0) 191,574.6439 (>1000.0) 188,570.8460 (>1000.0) 1,507.6561 (317.41) 188,078.5370 (>1000.0) 423.6250 (>1000.0) 1;1 5.3030 (0.00) 6 1 test_add_metabolite_benchmark[glpk] 192,881.4290 (>1000.0) 194,284.8600 (>1000.0) 193,514.2997 (>1000.0) 545.3144 (114.81) 193,421.1145 (>1000.0) 967.3339 (>1000.0) 2;0 5.1676 (0.00) 6 1 test_fastcc_benchmark[glpk] 231,151.7950 (>1000.0) 251,812.6980 (>1000.0) 241,986.7624 (>1000.0) 7,673.9685 (>1000.0) 242,768.7810 (>1000.0) 10,023.0402 (>1000.0) 2;0 4.1325 (0.00) 5 1 test_optgp_init_benchmark 271,135.6861 (>1000.0) 287,999.5781 (>1000.0) 279,350.1392 (>1000.0) 6,322.9704 (>1000.0) 279,307.2360 (>1000.0) 8,659.5040 (>1000.0) 2;0 3.5797 (0.00) 5 1 test_achr_init_benchmark 272,453.1750 (>1000.0) 382,324.3149 (>1000.0) 312,555.5856 (>1000.0) 47,198.0636 (>1000.0) 286,386.5640 (>1000.0) 71,759.9260 (>1000.0) 1;0 3.1994 (0.00) 5 1 test_double_gene_deletion_benchmark 404,774.0239 (>1000.0) 447,346.7830 (>1000.0) 432,166.9812 (>1000.0) 17,027.0336 (>1000.0) 440,070.2290 (>1000.0) 21,621.4078 (>1000.0) 1;0 2.3139 (0.00) 5 1 test_single_gene_deletion_linear_moma_benchmark[glpk] 505,303.8030 (>1000.0) 543,621.6970 (>1000.0) 514,885.3320 (>1000.0) 16,187.6919 (>1000.0) 509,104.1881 (>1000.0) 12,528.7300 (>1000.0) 1;1 1.9422 (0.00) 5 1 test_single_gene_deletion_fba_benchmark[glpk] 510,718.8380 (>1000.0) 546,284.2970 (>1000.0) 527,350.5770 (>1000.0) 15,315.3519 (>1000.0) 531,718.9880 (>1000.0) 26,053.4048 (>1000.0) 2;0 1.8963 (0.00) 5 1 test_gpr_symbolism_benchmark 550,925.5010 (>1000.0) 557,168.2840 (>1000.0) 552,579.1176 (>1000.0) 2,672.9585 (562.74) 551,091.3649 (>1000.0) 2,869.4262 (>1000.0) 1;0 1.8097 (0.00) 5 1 test_pfba_benchmark[glpk] 709,897.4810 (>1000.0) 1,016,135.2920 (>1000.0) 867,229.4118 (>1000.0) 109,840.4914 (>1000.0) 879,548.3820 (>1000.0) 112,903.1583 (>1000.0) 2;0 1.1531 (0.00) 5 1 test_single_gene_deletion_linear_room_benchmark[glpk] 741,320.0539 (>1000.0) 1,667,047.3240 (>1000.0) 939,242.1962 (>1000.0) 407,262.0999 (>1000.0) 755,640.8909 (>1000.0) 263,449.9326 (>1000.0) 1;1 1.0647 (0.00) 5 1 test_geometric_fba_benchmark[glpk] 1,035,695.0220 (>1000.0) 1,128,340.8321 (>1000.0) 1,084,651.3732 (>1000.0) 43,509.8508 (>1000.0) 1,091,606.8649 (>1000.0) 83,321.8392 (>1000.0) 2;0 0.9220 (0.00) 5 1 test_copy_benchmark_large_model[optlang-glpk] 1,108,902.1261 (>1000.0) 1,701,784.4010 (>1000.0) 1,399,118.9600 (>1000.0) 267,899.3753 (>1000.0) 1,333,844.7800 (>1000.0) 492,881.4870 (>1000.0) 2;0 0.7147 (0.00) 5 1 test_flux_variability_loopless_benchmark[glpk] 1,381,203.3511 (>1000.0) 1,449,062.2290 (>1000.0) 1,405,680.1926 (>1000.0) 29,181.4694 (>1000.0) 1,394,192.2559 (>1000.0) 46,313.3078 (>1000.0) 1;0 0.7114 (0.00) 5 1 test_double_reaction_deletion_benchmark 2,519,907.4460 (>1000.0) 2,924,285.2289 (>1000.0) 2,734,005.9550 (>1000.0) 144,549.9424 (>1000.0) 2,727,827.0370 (>1000.0) 135,402.2710 (>1000.0) 2;0 0.3658 (0.00) 5 1 test_flux_variability_benchmark[glpk] 4,213,983.2750 (>1000.0) 5,436,647.4840 (>1000.0) 4,597,128.1230 (>1000.0) 506,957.4870 (>1000.0) 4,375,835.4430 (>1000.0) 640,788.7765 (>1000.0) 1;0 0.2175 (0.00) 5 1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Legend: Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile. OPS: Operations Per Second, computed as 1 / Mean ==== 511 passed, 27 skipped, 11 xfailed, 161 warnings in 395.19s (0:06:35) ===== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-cobra-0.26.2/debian/python3-cobra running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running install_lib creating /build/python-cobra-0.26.2/debian/python3-cobra creating /build/python-cobra-0.26.2/debian/python3-cobra/usr creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11 creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/.benchmarks creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/__pycache__/exceptions.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__ creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/solution.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/reaction.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/group.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/model.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/formula.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/metabolite.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/species.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/gene.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/object.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/dictlist.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/singleton.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/configuration.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/configuration.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/dictlist.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/formula.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/group.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/metabolite.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/model.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/object.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/reaction.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/singleton.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/solution.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/core/species.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data/iJO1366.xml.gz -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.json -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.mat -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.yml -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini_cobra.xml -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data/salmonella.xml.gz -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data/textbook.xml.gz -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/data/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/reaction.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/deletion.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/fastcc.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/gapfilling.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/geometric.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/helpers.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/loopless.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/moma.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/parsimonious.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/reaction.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/room.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/variability.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/yaml.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/sbml.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/mat.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/json.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/dict.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/schema_v1.json -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/cobrapy_repository.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/load.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/biomodels_repository.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/abstract_model_repository.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/bigg_models_repository.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/biomodels_repository.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/cobrapy_repository.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/load.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/json.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/mat.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/yaml.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/sbml.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/io/dict.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/validate.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/modify.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/delete.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/annotate.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/delete.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/modify.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/validate.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/annotations.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium/annotations.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium/boundary_types.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/medium/minimal_medium.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/sampling.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/optgp.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/core.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/achr.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/achr.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/core.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/hr_sampler.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/optgp.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/sampling.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/model_summary.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/summary.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/metabolite_summary.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/model_summary.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/reaction_summary.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/summary/summary.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util creating /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/process_pool.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/util.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/solver.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/context.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/array.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/__init__.cpython-311.pyc -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/array.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/context.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/process_pool.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/solver.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/util/util.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/__init__.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra copying /build/python-cobra-0.26.2/.pybuild/cpython3_3.11_cobra/build/cobra/exceptions.py -> /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/configuration.py to configuration.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/dictlist.py to dictlist.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/formula.py to formula.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/gene.py to gene.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/group.py to group.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/metabolite.py to metabolite.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/model.py to model.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/object.py to object.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/reaction.py to reaction.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/singleton.py to singleton.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/solution.py to solution.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/species.py to species.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/room.py to room.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/bigg_models_repository.py to bigg_models_repository.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/cobrapy_repository.py to cobrapy_repository.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/load.py to load.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/json.py to json.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/mat.py to mat.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/yaml.py to yaml.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/sbml.py to sbml.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/dict.py to dict.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/delete.py to delete.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/modify.py to modify.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/validate.py to validate.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/annotations.py to annotations.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/achr.py to achr.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/core.py to core.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/optgp.py to optgp.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/sampling.py to sampling.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/summary.py to summary.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/array.py to array.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/context.py to context.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/process_pool.py to process_pool.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/solver.py to solver.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/util.py to util.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/exceptions.py to exceptions.cpython-311.pyc running install_egg_info running egg_info creating src/cobra.egg-info writing src/cobra.egg-info/PKG-INFO writing dependency_links to src/cobra.egg-info/dependency_links.txt writing requirements to src/cobra.egg-info/requires.txt writing top-level names to src/cobra.egg-info/top_level.txt writing manifest file 'src/cobra.egg-info/SOURCES.txt' reading manifest file 'src/cobra.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'src/cobra.egg-info/SOURCES.txt' Copying src/cobra.egg-info to /build/python-cobra-0.26.2/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra-0.26.2.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/python-cobra-0.26.2' dh_install -X update_pickles.py --package=python-cobra-data dh_install --remaining-packages find debian -name __pycache__ | xargs rm -rf make[1]: Leaving directory '/build/python-cobra-0.26.2' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:302: Cannot find package that provides python_libsbml. Please add package that provides it to Build-Depends or add "python_libsbml python3-libsbml" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-cobra-data' in '../python-cobra-data_0.26.2-1_all.deb'. dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.26.2-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../python-cobra_0.26.2-1_amd64.buildinfo dpkg-genchanges --build=binary -O../python-cobra_0.26.2-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2051278 and its subdirectories I: Current time: Mon Apr 24 22:06:18 -12 2023 I: pbuilder-time-stamp: 1682417178