I: pbuilder: network access will be disabled during build I: Current time: Sat May 20 23:46:07 +14 2023 I: pbuilder-time-stamp: 1684575967 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-biom-format_2.1.12-3.dsc] I: copying [./python-biom-format_2.1.12.orig.tar.xz] I: copying [./python-biom-format_2.1.12-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Dec 4 09:19:18 2022 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@emlwks999.eu" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-biom-format_2.1.12-3.dsc: no acceptable signature found dpkg-source: info: extracting python-biom-format in python-biom-format-2.1.12 dpkg-source: info: unpacking python-biom-format_2.1.12.orig.tar.xz dpkg-source: info: unpacking python-biom-format_2.1.12-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying ignore_local_dist-packages.patch dpkg-source: info: applying no-web-adds.patch dpkg-source: info: applying fix_future_import.patch dpkg-source: info: applying enable_sloppy_sphinx_build.patch dpkg-source: info: applying sphinx_1.6.patch dpkg-source: info: applying sphinx.ext.pngmath.patch dpkg-source: info: applying posix_shell.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3977765/tmp/hooks/D01_modify_environment starting debug: Running on ionos1-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 May 20 23:46 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3977765/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3977765/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.15(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 ' DIRSTACK=() DISTRIBUTION=bookworm EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=92fd9303eda343348a2bdb57656bf1da LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3977765 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.kOHIcLyJ/pbuilderrc_g5fw --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.kOHIcLyJ/b2 --logfile b2/build.log --extrapackages usrmerge python-biom-format_2.1.12-3.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 5.10.0-23-amd64 #1 SMP Debian 5.10.179-1 (2023-05-12) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 24 11:23 bash -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp -rwxr-xr-x 1 root root 125640 Jan 6 03:20 dash -rwxr-xr-x 1 root root 121904 Sep 21 2022 date -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd -rwxr-xr-x 1 root root 102200 Sep 21 2022 df -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir -rwxr-xr-x 1 root root 88656 Mar 24 00:02 dmesg lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep -rwxr-xr-x 1 root root 35664 Sep 21 2022 false -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 24 00:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 23 22:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 25 04:43 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 20 03:33 hostname -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln -rwxr-xr-x 1 root root 53024 Mar 24 02:40 login -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls -rwxr-xr-x 1 root root 207168 Mar 24 00:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 24 00:02 more -rwsr-xr-x 1 root root 59704 Mar 24 00:02 mount -rwxr-xr-x 1 root root 18744 Mar 24 00:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd lrwxrwxrwx 1 root root 4 Apr 24 11:23 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 3 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 6 09:55 sed lrwxrwxrwx 1 root root 9 May 20 23:46 sh -> /bin/bash -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty -rwsr-xr-x 1 root root 72000 Mar 24 00:02 su -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync -rwxr-xr-x 1 root root 531984 Apr 7 04:25 tar -rwxr-xr-x 1 root root 14520 Nov 3 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch -rwxr-xr-x 1 root root 35664 Sep 21 2022 true -rwxr-xr-x 1 root root 14568 Mar 23 22:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 24 00:02 umount -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 24 00:02 wdctl lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/3977765/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest, python3-pytest-cov dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on bash-completion; however: Package bash-completion is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-future; however: Package python3-future is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however: Package python3-pytest-cov is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bash-completion{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libcurl4{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-hl-100{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblocale-gettext-perl{a} liblzf1{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libopenjp2-7{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libsz2{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxsimd-dev{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} openssl{a} po-debconf{a} python-babel-localedata{a} python-matplotlib-data{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-babel{a} python3-beniget{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-contourpy{a} python3-coverage{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-docutils{a} python3-fonttools{a} python3-fs{a} python3-future{a} python3-gast{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-imagesize{a} python3-iniconfig{a} python3-jinja2{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-ply{a} python3-py{a} python3-pygments{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-cov{a} python3-pythran{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sympy{a} python3-tk{a} python3-tz{a} python3-ufolib2{a} python3-urllib3{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tk8.6-blt2.5{a} unicode-data{a} x11-common{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-html5lib python3-numba python3-numexpr python3-odf python3-olefile python3-openpyxl python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 202 newly installed, 0 to remove and 0 not upgraded. Need to get 143 MB of archives. After unpacking 762 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 liblocale-gettext-perl amd64 1.07-5 [15.4 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 14 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 bash-completion all 1:2.11-6 [234 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.8-1 [1407 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [1035 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2 [292 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2 [759 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libtk8.6 amd64 8.6.13-2 [781 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 cython3 amd64 0.29.32-2+b1 [1302 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 docutils-common all 0.19+dfsg-6 [127 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 fonts-lyx all 2.3.7-1 [186 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 help2man amd64 1.49.3 [198 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 libaec0 amd64 1.0.6-1+b1 [21.1 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-20 [9510 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-9 [386 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get: 96 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 libsz2 amd64 1.0.6-1+b1 [7804 B] Get: 98 http://deb.debian.org/debian bookworm/main amd64 libhdf5-103-1 amd64 1.10.8+repack1-1 [1237 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 libhdf5-hl-100 amd64 1.10.8+repack1-1 [67.8 kB] Get: 100 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B] Get: 104 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-metadata all 12-4 [6532 B] Get: 105 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-3 [184 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 108 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 109 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 110 http://deb.debian.org/debian bookworm/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 libopenblas0-pthread amd64 0.3.21+ds-4 [6709 kB] Get: 112 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get: 113 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [28.9 kB] Get: 114 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get: 115 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get: 116 http://deb.debian.org/debian bookworm/main amd64 liblzf1 amd64 3.6-3 [10.2 kB] Get: 117 http://deb.debian.org/debian bookworm/main amd64 libopenblas0 amd64 0.3.21+ds-4 [32.6 kB] Get: 118 http://deb.debian.org/debian bookworm/main amd64 libopenblas-pthread-dev amd64 0.3.21+ds-4 [4971 kB] Get: 119 http://deb.debian.org/debian bookworm/main amd64 libopenblas-dev amd64 0.3.21+ds-4 [44.9 kB] Get: 120 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-1+b1 [189 kB] Get: 121 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get: 122 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 123 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get: 124 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get: 125 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get: 126 http://deb.debian.org/debian bookworm/main amd64 libqhull-r8.0 amd64 2020.2-5 [248 kB] Get: 127 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4.1 [10.6 kB] Get: 128 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.1 [285 kB] Get: 129 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-5 [316 kB] Get: 130 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.1 [99.2 kB] Get: 131 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.1 [109 kB] Get: 132 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get: 133 http://deb.debian.org/debian bookworm/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get: 134 http://deb.debian.org/debian bookworm/main amd64 python-babel-localedata all 2.10.3-1 [5615 kB] Get: 135 http://deb.debian.org/debian bookworm/main amd64 python-matplotlib-data all 3.6.3-1 [2744 kB] Get: 136 http://deb.debian.org/debian bookworm/main amd64 python3-alabaster all 0.7.12-1 [20.8 kB] Get: 137 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get: 138 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get: 139 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get: 140 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get: 141 http://deb.debian.org/debian bookworm/main amd64 python3-appdirs all 1.4.4-3 [13.0 kB] Get: 142 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get: 143 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 144 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7.1-3 [30.1 kB] Get: 145 http://deb.debian.org/debian bookworm/main amd64 python3-babel all 2.10.3-1 [103 kB] Get: 146 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get: 147 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get: 148 http://deb.debian.org/debian bookworm/main amd64 python3-brotli amd64 1.0.9-2+b6 [281 kB] Get: 149 http://deb.debian.org/debian bookworm/main amd64 python3-certifi all 2022.9.24-1 [153 kB] Get: 150 http://deb.debian.org/debian bookworm/main amd64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get: 151 http://deb.debian.org/debian bookworm/main amd64 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get: 152 http://deb.debian.org/debian bookworm/main amd64 python3-colorama all 0.4.6-2 [36.8 kB] Get: 153 http://deb.debian.org/debian bookworm/main amd64 python3-click all 8.1.3-2 [92.2 kB] Get: 154 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get: 155 http://deb.debian.org/debian bookworm/main amd64 python3-contourpy amd64 1.0.7-1+b1 [176 kB] Get: 156 http://deb.debian.org/debian bookworm/main amd64 python3-coverage amd64 6.5.0+dfsg1-2+b1 [153 kB] Get: 157 http://deb.debian.org/debian bookworm/main amd64 python3-cycler all 0.11.0-1 [8020 B] Get: 158 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get: 159 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-2 [78.3 kB] Get: 160 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get: 161 http://deb.debian.org/debian bookworm/main amd64 python3-roman all 3.3-3 [9880 B] Get: 162 http://deb.debian.org/debian bookworm/main amd64 python3-docutils all 0.19+dfsg-6 [382 kB] Get: 163 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get: 164 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get: 165 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.10.1-2 [15.2 MB] Get: 166 http://deb.debian.org/debian bookworm/main amd64 python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get: 167 http://deb.debian.org/debian bookworm/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get: 168 http://deb.debian.org/debian bookworm/main amd64 python3-sympy all 1.11.1-1 [4358 kB] Get: 169 http://deb.debian.org/debian bookworm/main amd64 python3-fs all 2.4.16-2 [95.2 kB] Get: 170 http://deb.debian.org/debian bookworm/main amd64 python3-lxml amd64 4.9.2-1+b1 [1194 kB] Get: 171 http://deb.debian.org/debian bookworm/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b2 [25.0 kB] Get: 172 http://deb.debian.org/debian bookworm/main amd64 unicode-data all 15.0.0-1 [7984 kB] Get: 173 http://deb.debian.org/debian bookworm/main amd64 python3-fonttools amd64 4.38.0-1+b1 [1012 kB] Get: 174 http://deb.debian.org/debian bookworm/main amd64 python3-future all 0.18.2-6 [348 kB] Get: 175 http://deb.debian.org/debian bookworm/main amd64 python3-h5py-serial amd64 3.7.0-8 [804 kB] Get: 176 http://deb.debian.org/debian bookworm/main amd64 python3-h5py all 3.7.0-8 [10.3 kB] Get: 177 http://deb.debian.org/debian bookworm/main amd64 python3-idna all 3.3-1 [39.4 kB] Get: 178 http://deb.debian.org/debian bookworm/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 179 http://deb.debian.org/debian bookworm/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 180 http://deb.debian.org/debian bookworm/main amd64 python3-markupsafe amd64 2.1.2-1+b1 [13.2 kB] Get: 181 http://deb.debian.org/debian bookworm/main amd64 python3-jinja2 all 3.1.2-1 [119 kB] Get: 182 http://deb.debian.org/debian bookworm/main amd64 python3-kiwisolver amd64 1.4.4-1+b1 [60.1 kB] Get: 183 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.4.0-1.1+b1 [472 kB] Get: 184 http://deb.debian.org/debian bookworm/main amd64 python3-tk amd64 3.11.2-3 [98.3 kB] Get: 185 http://deb.debian.org/debian bookworm/main amd64 python3-pil.imagetk amd64 9.4.0-1.1+b1 [74.4 kB] Get: 186 http://deb.debian.org/debian bookworm/main amd64 python3-pyparsing all 3.0.9-1 [138 kB] Get: 187 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get: 188 http://deb.debian.org/debian bookworm/main amd64 python3-matplotlib amd64 3.6.3-1+b1 [6921 kB] Get: 189 http://deb.debian.org/debian bookworm/main amd64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 190 http://deb.debian.org/debian bookworm/main amd64 python3-pandas-lib amd64 1.5.3+dfsg-2 [3499 kB] Get: 191 http://deb.debian.org/debian bookworm/main amd64 python3-pandas all 1.5.3+dfsg-2 [2885 kB] Get: 192 http://deb.debian.org/debian bookworm/main amd64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 193 http://deb.debian.org/debian bookworm/main amd64 python3-py all 1.11.0-1 [89.2 kB] Get: 194 http://deb.debian.org/debian bookworm/main amd64 python3-pygments all 2.14.0+dfsg-1 [783 kB] Get: 195 http://deb.debian.org/debian bookworm/main amd64 python3-pytest all 7.2.1-2 [236 kB] Get: 196 http://deb.debian.org/debian bookworm/main amd64 python3-pytest-cov all 4.0.0-1 [26.1 kB] Get: 197 http://deb.debian.org/debian bookworm/main amd64 python3-urllib3 all 1.26.12-1 [117 kB] Get: 198 http://deb.debian.org/debian bookworm/main amd64 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get: 199 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Get: 200 http://deb.debian.org/debian bookworm/main amd64 python3-snowballstemmer all 2.2.0-2 [57.8 kB] Get: 201 http://deb.debian.org/debian bookworm/main amd64 sphinx-common all 5.3.0-4 [653 kB] Get: 202 http://deb.debian.org/debian bookworm/main amd64 python3-sphinx all 5.3.0-4 [549 kB] Fetched 143 MB in 4s (33.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libjs-jquery. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../0-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-hotkeys. Preparing to unpack .../1-libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2.1_all.deb ... Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... 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Setting up libicu72:amd64 (72.1-3) ... Setting up liblerc4:amd64 (4.0.0+ds-2) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.74.6-2) ... No schema files found: doing nothing. Setting up fonts-lyx (2.3.7-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:amd64 (1.52.0-1) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up libdeflate0:amd64 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libqhull-r8.0:amd64 (2020.2-5) ... Setting up file (1:5.44-3) ... Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up libaec0:amd64 (1.0.6-1+b1) ... Setting up python-babel-localedata (2.10.3-1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Setting up unicode-data (15.0.0-1) ... Setting up libxsimd-dev:amd64 (8.1.0-7) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2) ... Setting up libx11-data (2:1.8.4-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up bash-completion (1:2.11-6) ... Setting up liblzf1:amd64 (3.6-3) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up libpng16-16:amd64 (1.6.39-2) ... Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... Setting up autopoint (0.21-12) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:amd64 (1.2.4-0.1) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libtiff6:amd64 (4.5.0-5) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libjson-perl (4.10000-1) ... Setting up libopenjp2-7:amd64 (2.5.0-1+b1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up sgml-base (1.31) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... Setting up python-matplotlib-data (3.6.3-1) ... Setting up openssl (3.0.8-1) ... Setting up libwebpmux3:amd64 (1.2.4-0.1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up libsz2:amd64 (1.0.6-1+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libopenblas0-pthread:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libtool (2.4.7-5) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libwebpdemux2:amd64 (1.2.4-0.1) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-5) ... Setting up libjs-jquery-metadata (12-4) ... Setting up libjs-jquery-isonscreen (1.2.0-1.1) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-3) ... Setting up libopenblas0:amd64 (0.3.21+ds-4) ... Setting up groff-base (1.22.4-10) ... Setting up xml-core (0.18+nmu1) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up libcurl4:amd64 (7.88.1-9) ... Setting up libx11-6:amd64 (2:1.8.4-2) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up libfontconfig1:amd64 (2.14.1-4) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libopenblas-dev:amd64 (0.3.21+ds-4) ... Setting up libraqm0:amd64 (0.7.0-4.1) ... Setting up sphinx-common (5.3.0-4) ... Setting up libhdf5-103-1:amd64 (1.10.8+repack1-1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up libhdf5-hl-100:amd64 (1.10.8+repack1-1) ... Setting up python3.11 (3.11.2-6) ... Setting up libxft2:amd64 (2.3.6-1) ... Setting up libpython3.11:amd64 (3.11.2-6) ... Setting up libtk8.6:amd64 (8.6.13-2) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-markupsafe (2.1.2-1+b1) ... Setting up python3-tz (2022.7.1-3) ... Setting up python3-six (1.16.0-4) ... Setting up python3-roman (3.3-3) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-jinja2 (3.1.2-1) ... Setting up python3-packaging (23.0-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-snowballstemmer (2.2.0-2) ... Setting up libpython3.11-dev:amd64 (3.11.2-6) ... Setting up python3-brotli (1.0.9-2+b6) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-kiwisolver (1.4.4-1+b1) ... Setting up python3-idna (3.3-1) ... Setting up cython3 (0.29.32-2+b1) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-lxml:amd64 (4.9.2-1+b1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-appdirs (1.4.4-3) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.11.1-1) ... Setting up python3-attr (22.2.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-babel (2.10.3-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-colorama (0.4.6-2) ... Setting up python3-lz4 (4.0.2+dfsg-1+b2) ... Setting up python3.11-dev (3.11.2-6) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-alabaster (0.7.12-1) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-ply (3.11-5) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-coverage (6.5.0+dfsg1-2+b1) ... Setting up python3-tk:amd64 (3.11.2-3) ... Setting up python3-pytest-cov (4.0.0-1) ... Setting up python3-click (8.1.3-2) ... Setting up python3-fs (2.4.16-2) ... Setting up python3-beniget (0.4.1-3) ... Setting up python3-pygments (2.14.0+dfsg-1) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up libpython3-all-dev:amd64 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-contourpy (1.0.7-1+b1) ... Setting up python3-future (0.18.2-6) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Setting up python3-h5py-serial (3.7.0-8) ... Setting up python3-pandas (1.5.3+dfsg-2) ... Setting up python3-h5py (3.7.0-8) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-scipy (1.10.1-2) ... Setting up python3-pil:amd64 (9.4.0-1.1+b1) ... Setting up python3-pil.imagetk:amd64 (9.4.0-1.1+b1) ... Setting up python3-ufolib2 (0.14.0+dfsg1-1) ... Setting up python3-fonttools (4.38.0-1+b1) ... Setting up python3-matplotlib (3.6.3-1+b1) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.19+dfsg-6) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.19+dfsg-6) ... Setting up python3-sphinx (5.3.0-4) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... usrmerge is already the newest version (35). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/3977765/tmp/hooks/A99_set_merged_usr starting Re-configuring usrmerge... removed '/etc/unsupported-skip-usrmerge-conversion' The system has been successfully converted. I: user script /srv/workspace/pbuilder/3977765/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/python-biom-format-2.1.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-biom-format_2.1.12-3_source.changes dpkg-buildpackage: info: source package python-biom-format dpkg-buildpackage: info: source version 2.1.12-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Mohammed Bilal dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3,bash-completion,sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.11 I: pybuild base:240: python3.11 setup.py clean /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar. if not hasattr(numpy, method): /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar. obj = getattr(themodule, elem) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-biom-format-2.1.12/biom/_filter.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-biom-format-2.1.12/biom/_subsample.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-biom-format-2.1.12/biom/_transform.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling biom/_filter.pyx because it changed. Compiling biom/_transform.pyx because it changed. Compiling biom/_subsample.pyx because it changed. [1/3] Cythonizing biom/_filter.pyx [2/3] Cythonizing biom/_subsample.pyx [3/3] Cythonizing biom/_transform.pyx running clean removing '/build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars ./biom/_filter.c ./biom/_subsample.c ./biom/_transform.c debian/files rm -fr -- debian/python3-biom-format/ debian/tmp/ debian/python-biom-format-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3,bash-completion,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.11 I: pybuild base:240: python3.11 setup.py config /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar. if not hasattr(numpy, method): /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar. obj = getattr(themodule, elem) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-biom-format-2.1.12/biom/_filter.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-biom-format-2.1.12/biom/_subsample.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-biom-format-2.1.12/biom/_transform.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling biom/_filter.pyx because it changed. Compiling biom/_transform.pyx because it changed. Compiling biom/_subsample.pyx because it changed. [1/3] Cythonizing biom/_filter.pyx [2/3] Cythonizing biom/_subsample.pyx [3/3] Cythonizing biom/_transform.pyx running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/python-biom-format-2.1.12' # arch USE_CYTHON=true dh_auto_build pybuild --build -i python{version} -p 3.11 I: pybuild base:240: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar. if not hasattr(numpy, method): /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar. obj = getattr(themodule, elem) running build running build_py creating /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom copying biom/__init__.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom copying biom/parse.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom copying biom/exception.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom copying biom/table.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom copying biom/err.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom copying biom/util.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom creating /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli copying biom/cli/uc_processor.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli copying biom/cli/table_normalizer.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli copying biom/cli/table_head.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli copying biom/cli/__init__.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli copying biom/cli/table_validator.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli copying biom/cli/metadata_adder.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli copying biom/cli/metadata_exporter.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli copying biom/cli/table_converter.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli copying biom/cli/installation_informer.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli copying biom/cli/table_summarizer.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli copying biom/cli/util.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli copying biom/cli/table_ids.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli copying biom/cli/table_subsetter.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli creating /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests copying biom/tests/test_table.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests copying biom/tests/__init__.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests copying biom/tests/test_parse.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests copying biom/tests/long_lines.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests copying biom/tests/test_util.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests copying biom/tests/test_err.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests creating /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_show_install_info.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/__init__.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_normalizer.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_validate_table.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_subset_table.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_summarize_table.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_uc_processor.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_converter.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_add_metadata.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli creating /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_data copying biom/tests/test_data/__init__.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_data running egg_info creating biom_format.egg-info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt writing manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'COPYING.txt' writing manifest file 'biom_format.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biom.assets' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'biom.assets' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'biom.assets' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'biom.assets' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biom.tests.bench_tables' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.bench_tables' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'biom.tests.bench_tables' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'biom.tests.bench_tables' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biom.tests.test_cli.test_data' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.test_cli.test_data' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'biom.tests.test_cli.test_data' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'biom.tests.test_cli.test_data' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) copying biom/_filter.pyx -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom copying biom/_subsample.pyx -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom copying biom/_transform.pyx -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom creating /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/assets copying biom/assets/exercise_api.py -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/assets copying biom/assets/exercise_cli.sh -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/assets creating /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables creating /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.biom -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.json -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_data/bad_table.txt -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_data copying biom/tests/test_data/bad_table.txt.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_data copying biom/tests/test_data/empty.biom -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_data copying biom/tests/test_data/no-contents.biom -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.biom -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json.gz -> /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_data running build_ext building 'biom._filter' extension INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating build creating build/temp.linux-x86_64-cpython-311 creating build/temp.linux-x86_64-cpython-311/biom INFO: compile options: '-I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c' INFO: x86_64-linux-gnu-gcc: biom/_filter.c In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_filter.c:768: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ INFO: x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/biom/_filter.o -L/usr/lib/x86_64-linux-gnu -o /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/_filter.cpython-311-x86_64-linux-gnu.so building 'biom._transform' extension INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c' INFO: x86_64-linux-gnu-gcc: biom/_transform.c In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_transform.c:768: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ INFO: x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/biom/_transform.o -L/usr/lib/x86_64-linux-gnu -o /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/_transform.cpython-311-x86_64-linux-gnu.so building 'biom._subsample' extension INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c' INFO: x86_64-linux-gnu-gcc: biom/_subsample.c In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_subsample.c:768: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ INFO: x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/biom/_subsample.o -L/usr/lib/x86_64-linux-gnu -o /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/_subsample.cpython-311-x86_64-linux-gnu.so # indep: PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc build/html Running Sphinx v5.3.0 making output directory... done [autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst Failed to import biom. Possible hints: * ModuleNotFoundError: No module named 'biom._filter' * KeyError: 'biom' Failed to import biom.table. Possible hints: * ModuleNotFoundError: No module named 'biom._filter' * KeyError: 'biom' building [mo]: targets for 0 po files that are out of date building [html]: targets for 12 source files that are out of date updating environment: [new config] 12 added, 0 changed, 0 removed reading sources... [ 8%] BIOM_LICENSE reading sources... [ 16%] documentation/adding_metadata reading sources... [ 25%] documentation/biom_conversion reading sources... [ 33%] documentation/biom_format reading sources... [ 41%] documentation/format_versions/biom-1.0 reading sources... [ 50%] documentation/format_versions/biom-2.0 reading sources... [ 58%] documentation/format_versions/biom-2.1 reading sources... [ 66%] documentation/index reading sources... [ 75%] documentation/quick_usage_examples reading sources... [ 83%] documentation/summarizing_biom_tables reading sources... [ 91%] documentation/table_objects reading sources... [100%] index WARNING: autodoc: failed to import module 'biom'; the following exception was raised: No module named 'biom._filter' WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised: No module named 'biom._filter' looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 8%] BIOM_LICENSE writing output... [ 16%] documentation/adding_metadata writing output... [ 25%] documentation/biom_conversion writing output... [ 33%] documentation/biom_format writing output... [ 41%] documentation/format_versions/biom-1.0 writing output... [ 50%] documentation/format_versions/biom-2.0 writing output... [ 58%] documentation/format_versions/biom-2.1 writing output... [ 66%] documentation/index writing output... [ 75%] documentation/quick_usage_examples writing output... [ 83%] documentation/summarizing_biom_tables writing output... [ 91%] documentation/table_objects writing output... [100%] index /build/python-biom-format-2.1.12/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated /build/python-biom-format-2.1.12/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated /build/python-biom-format-2.1.12/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated /build/python-biom-format-2.1.12/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated generating indices... done writing additional pages... search done copying images... [100%] _static/biom-format.png copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 6 warnings. The HTML pages are in build/html. PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b man doc build/man Running Sphinx v5.3.0 making output directory... done [autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst Failed to import biom. Possible hints: * KeyError: 'biom' * ModuleNotFoundError: No module named 'biom._filter' Failed to import biom.table. Possible hints: * KeyError: 'biom' * ModuleNotFoundError: No module named 'biom._filter' building [mo]: targets for 0 po files that are out of date building [man]: all manpages updating environment: [new config] 12 added, 0 changed, 0 removed reading sources... [ 8%] BIOM_LICENSE reading sources... [ 16%] documentation/adding_metadata reading sources... [ 25%] documentation/biom_conversion reading sources... [ 33%] documentation/biom_format reading sources... [ 41%] documentation/format_versions/biom-1.0 reading sources... [ 50%] documentation/format_versions/biom-2.0 reading sources... [ 58%] documentation/format_versions/biom-2.1 reading sources... [ 66%] documentation/index reading sources... [ 75%] documentation/quick_usage_examples reading sources... [ 83%] documentation/summarizing_biom_tables reading sources... [ 91%] documentation/table_objects reading sources... [100%] index WARNING: autodoc: failed to import module 'biom'; the following exception was raised: No module named 'biom._filter' WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised: No module named 'biom._filter' looking for now-outdated files... none found pickling environment... done checking consistency... done writing... biom.1 { documentation/index documentation/biom_format documentation/format_versions/biom-1.0 documentation/format_versions/biom-2.0 documentation/format_versions/biom-2.1 documentation/quick_usage_examples documentation/table_objects documentation/biom_conversion documentation/adding_metadata documentation/summarizing_biom_tables BIOM_LICENSE } done build succeeded, 2 warnings. The manual pages are in build/man. make[1]: Leaving directory '/build/python-biom-format-2.1.12' dh_auto_test -O--buildsystem=pybuild pybuild --test --test-pytest -i python{version} -p 3.11 I: pybuild pybuild:307: cp -r /build/python-biom-format-2.1.12/examples /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build I: pybuild base:240: cd /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build; python3.11 -m pytest ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack rootdir: /build/python-biom-format-2.1.12, configfile: pytest.ini plugins: cov-4.0.0 collected 366 items biom/tests/test_err.py ..................... [ 5%] biom/tests/test_parse.py .......................... [ 12%] biom/tests/test_table.py ............................................... [ 25%] ..sss................................................................... [ 45%] ....sss................................................................. [ 65%] .............................................................. [ 81%] biom/tests/test_util.py ..s................ [ 87%] biom/tests/test_cli/test_add_metadata.py .... [ 88%] biom/tests/test_cli/test_show_install_info.py . [ 88%] biom/tests/test_cli/test_subset_table.py ..... [ 89%] biom/tests/test_cli/test_summarize_table.py .. [ 90%] biom/tests/test_cli/test_table_converter.py ...... [ 92%] biom/tests/test_cli/test_table_normalizer.py . [ 92%] biom/tests/test_cli/test_uc_processor.py ...... [ 93%] biom/tests/test_cli/test_validate_table.py ...................... [100%] =============================== warnings summary =============================== biom/tests/test_table.py:19 /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_table.py:19: FutureWarning: pandas.util.testing is deprecated. Use the functions in the public API at pandas.testing instead. import pandas.util.testing as pdt .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_both .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_obs .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_sample /usr/lib/python3/dist-packages/scipy/sparse/_index.py:146: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient. self._set_arrayXarray(i, j, x) .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_observation_subset .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_sample_subset .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_observations_hdf5 .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_samples_hdf5 /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/table.py:4196: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future. data = np.hstack(h5_data[start:end] .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_observation_subset .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_sample_subset .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_observations_hdf5 .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_samples_hdf5 /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/table.py:4198: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future. indices = np.hstack(h5_indices[start:end] .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_table.py::TableTests::test_nnz_issue_727 /usr/lib/python3/dist-packages/scipy/sparse/_index.py:103: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient. self._set_intXint(row, col, x.flat[0]) .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/table_summarizer.py:88: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead. lines.append('Num samples: ' + locale.format('%d', num_samples, .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/table_summarizer.py:90: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead. lines.append('Num observations: ' + locale.format('%d', .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/table_summarizer.py:95: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead. lines.append('Total count: ' + locale.format('%d', total_count, .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/table_summarizer.py:110: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead. lines.append(' Min: ' + locale.format('%1.3f', min_counts, grouping=True)) .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/table_summarizer.py:111: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead. lines.append(' Max: ' + locale.format('%1.3f', max_counts, grouping=True)) .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/table_summarizer.py:112: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead. lines.append(' Median: ' + locale.format('%1.3f', median_counts, .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/table_summarizer.py:114: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead. lines.append(' Mean: ' + locale.format('%1.3f', mean_counts, .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/table_summarizer.py:116: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead. lines.append(' Std. dev.: ' + locale.format('%1.3f', .pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_summarize_table.py: 18 warnings /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/table_summarizer.py:143: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead. lines.append('%s: ' % k + locale.format('%1.3f', v, grouping=True)) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 359 passed, 7 skipped, 46 warnings in 11.98s ================= rm -fr -- /tmp/dh-xdg-rundir-otzrloMF create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars rm -fr -- debian/.debhelper/generated/python3-biom-format/ debian/python3-biom-format/ debian/tmp/ debian/.debhelper/generated/python-biom-format-doc/ debian/python-biom-format-doc/ rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/python-biom-format-2.1.12' dh_auto_install install -m0755 -d /build/python-biom-format-2.1.12/debian/tmp pybuild --install -i python{version} -p 3.11 --dest-dir /build/python-biom-format-2.1.12/debian/tmp I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-biom-format-2.1.12/debian/python3-biom-format /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar. if not hasattr(numpy, method): /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar. obj = getattr(themodule, elem) running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'COPYING.txt' writing manifest file 'biom_format.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biom.assets' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'biom.assets' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'biom.assets' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'biom.assets' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biom.tests.bench_tables' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.bench_tables' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'biom.tests.bench_tables' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'biom.tests.bench_tables' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biom.tests.test_cli.test_data' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.test_cli.test_data' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'biom.tests.test_cli.test_data' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'biom.tests.test_cli.test_data' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) running build_ext running install_lib creating /build/python-biom-format-2.1.12/debian/python3-biom-format creating /build/python-biom-format-2.1.12/debian/python3-biom-format/usr creating /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib creating /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11 creating /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages creating /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/examples copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/examples/min_sparse_otu_table.biom -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/examples copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/examples/sam_md.txt -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/examples copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/examples/obs_md.txt -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/examples copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/examples/rich_sparse_otu_table.biom -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/examples copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/examples/rich_sparse_otu_table_hdf5.biom -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/examples copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/examples/min_sparse_otu_table_hdf5.biom -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/examples creating /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom creating /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/__pycache__/parse.cpython-311.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/__pycache__/err.cpython-311.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/__pycache__/util.cpython-311.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/__pycache__/exception.cpython-311.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/__pycache__/table.cpython-311.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/__pycache__/__init__.cpython-311.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/_subsample.cpython-311-x86_64-linux-gnu.so -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/_transform.cpython-311-x86_64-linux-gnu.so -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/_filter.cpython-311-x86_64-linux-gnu.so -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom creating /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/assets copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/assets/exercise_cli.sh -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/assets copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/assets/exercise_api.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/assets copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/_transform.pyx -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/_subsample.pyx -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/_filter.pyx -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom creating /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests creating /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/__pycache__/test_util.cpython-311-pytest-7.2.1.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/__pycache__/test_table.cpython-311-pytest-7.2.1.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/__pycache__/long_lines.cpython-311.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/__pycache__/test_parse.cpython-311-pytest-7.2.1.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/__pycache__/test_err.cpython-311-pytest-7.2.1.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/__pycache__/__init__.cpython-311.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/__pycache__ creating /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/bench_tables creating /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_data/test.json.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_data/test.json -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_data/test.biom -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_data/no-contents.biom -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_data/empty.biom -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_data/bad_table.txt.gz -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_data/bad_table.txt -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_data copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_data/__init__.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_data creating /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli creating /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/__pycache__/test_validate_table.cpython-311-pytest-7.2.1.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/__pycache__/test_uc_processor.cpython-311-pytest-7.2.1.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/__pycache__/test_table_normalizer.cpython-311-pytest-7.2.1.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/__pycache__/test_table_converter.cpython-311-pytest-7.2.1.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/__pycache__/test_summarize_table.cpython-311-pytest-7.2.1.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/__pycache__/test_subset_table.cpython-311-pytest-7.2.1.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/__pycache__/test_show_install_info.cpython-311-pytest-7.2.1.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/__pycache__/test_add_metadata.cpython-311-pytest-7.2.1.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/__pycache__/__init__.cpython-311.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/__pycache__ creating /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/test_data copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_data/test.json -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/test_data copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_data/test.biom -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/test_data copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/test_data copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/test_data copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_add_metadata.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_table_converter.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_uc_processor.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_summarize_table.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_subset_table.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_validate_table.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_table_normalizer.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/__init__.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_cli/test_show_install_info.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_err.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_util.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/long_lines.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_parse.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/__init__.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/tests/test_table.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests creating /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli creating /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/__pycache__/uc_processor.cpython-311.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/__pycache__/table_validator.cpython-311.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/__pycache__/table_ids.cpython-311.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/__pycache__/table_head.cpython-311.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/__pycache__/table_normalizer.cpython-311.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/__pycache__/table_subsetter.cpython-311.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/__pycache__/installation_informer.cpython-311.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/__pycache__/table_converter.cpython-311.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/__pycache__/metadata_exporter.cpython-311.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/__pycache__/util.cpython-311.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/__pycache__/metadata_adder.cpython-311.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/__pycache__/table_summarizer.cpython-311.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/__pycache__/__init__.cpython-311.pyc -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/__pycache__ copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/table_subsetter.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/table_ids.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/util.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/table_summarizer.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/installation_informer.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/table_converter.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/metadata_exporter.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/metadata_adder.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/table_validator.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/__init__.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/table_head.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/table_normalizer.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/cli/uc_processor.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/util.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/err.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/table.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/exception.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/parse.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom copying /build/python-biom-format-2.1.12/.pybuild/cpython3_3.11_biom-format/build/biom/__init__.py -> /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/assets/exercise_api.py to exercise_api.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_data/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/test_add_metadata.py to test_add_metadata.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/test_table_converter.py to test_table_converter.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/test_uc_processor.py to test_uc_processor.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/test_summarize_table.py to test_summarize_table.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/test_subset_table.py to test_subset_table.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/test_validate_table.py to test_validate_table.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/test_table_normalizer.py to test_table_normalizer.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_cli/test_show_install_info.py to test_show_install_info.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_err.py to test_err.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_util.py to test_util.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/long_lines.py to long_lines.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_parse.py to test_parse.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/tests/test_table.py to test_table.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/table_subsetter.py to table_subsetter.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/table_ids.py to table_ids.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/util.py to util.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/table_summarizer.py to table_summarizer.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/installation_informer.py to installation_informer.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/table_converter.py to table_converter.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/metadata_exporter.py to metadata_exporter.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/metadata_adder.py to metadata_adder.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/table_validator.py to table_validator.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/table_head.py to table_head.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/table_normalizer.py to table_normalizer.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/cli/uc_processor.py to uc_processor.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/util.py to util.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/err.py to err.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/table.py to table.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/exception.py to exception.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/parse.py to parse.cpython-311.pyc byte-compiling /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom/__init__.py to __init__.cpython-311.pyc running install_egg_info Copying biom_format.egg-info to /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/lib/python3.11/dist-packages/biom_format-2.1.12.egg-info Skipping SOURCES.txt running install_scripts Installing biom script to /build/python-biom-format-2.1.12/debian/python3-biom-format/usr/bin I: pybuild pybuild:333: dh_numpy3 mv debian/python3-biom-format.substvars.new debian/python3-biom-format.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars find debian/python3-biom-format -name .coverage -delete make[1]: Leaving directory '/build/python-biom-format-2.1.12' rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_installdocs-indep make[1]: Entering directory '/build/python-biom-format-2.1.12' dh_installdocs --indep dh_installdocs: warning: Cannot auto-detect main package for python-biom-format-doc. If the default is wrong, please use --doc-main-package install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc cd './build/html/..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/python-biom-format-2.1.12/debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc chmod -R u\+rw,go=rX debian/python-biom-format-doc/usr/share/doc install -p -m0644 debian/copyright debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/copyright install -m0755 -d debian/python-biom-format-doc/usr/share/doc-base/ install -p -m0644 debian/python-biom-format-doc.doc-base debian/python-biom-format-doc/usr/share/doc-base/python-biom-format-doc.python-biom-format dh_sphinxdoc --indep ln -sf ../../../../javascript/sphinxdoc/1.0/_sphinx_javascript_frameworks_compat.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/_sphinx_javascript_frameworks_compat.js ln -sf ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js ln -sf ../../../../javascript/sphinxdoc/1.0/jquery.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/jquery.js ln -sf ../../../../javascript/sphinxdoc/1.0/underscore.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/underscore.js dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/copybutton.js ln -sf ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js ln -sf ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js ln -sf ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js rm -rf debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/.doctrees rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/.buildinfo mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars make[1]: Leaving directory '/build/python-biom-format-2.1.12' dh_installdocs -O--buildsystem=pybuild -Npython-biom-format-doc install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format cp --reflink=auto -a ./debian/README.test debian/python3-biom-format/usr/share/doc/python3-biom-format cp --reflink=auto -a ./debian/tests/run-unit-test debian/python3-biom-format/usr/share/doc/python3-biom-format chmod -R u\+rw,go=rX debian/python3-biom-format/usr/share/doc install -p -m0644 debian/copyright debian/python3-biom-format/usr/share/doc/python3-biom-format/copyright dh_sphinxdoc -O--buildsystem=pybuild dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/copybutton.js dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format install -p -m0644 debian/.debhelper/generated/python3-biom-format/dh_installchangelogs.dch.trimmed debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog.Debian install -p -m0644 ./ChangeLog.md debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc install -p -m0644 debian/.debhelper/generated/python-biom-format-doc/dh_installchangelogs.dch.trimmed debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/changelog.Debian install -p -m0644 ./ChangeLog.md debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/changelog rm -f debian/python-biom-format-doc.debhelper.log debian/rules override_dh_installexamples make[1]: Entering directory '/build/python-biom-format-2.1.12' dh_installexamples install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/min_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/min_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/obs_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/rich_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/rich_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/sam_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples find debian -name "*.c" -delete find debian -name "*.pyx" -delete # move tests from Python3 package to examples package if [ ! -d biom/tests ] ; then \ mv `find debian/python*biom-format -name tests -type d` biom ; \ else \ find debian/python*biom-format -name tests -type d | xargs rm -rf ; \ fi make[1]: Leaving directory '/build/python-biom-format-2.1.12' dh_installman -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/usr/share/man/man1/ install -p -m0644 ./debian/biom.1 debian/python3-biom-format/usr/share/man/man1/biom.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-biom-format/usr/share/man/man1/biom.1 mv debian/python3-biom-format/usr/share/man/man1/biom.1.dh-new debian/python3-biom-format/usr/share/man/man1/biom.1 chmod 0644 -- debian/python3-biom-format/usr/share/man/man1/biom.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:179: version: 5.20230130 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:182: supported Python versions: 3.11 (default=3.11) D: dh_python3 debhelper:149: skipping package: python-biom-format-doc D: dh_python3 debhelper:183: source=python-biom-format, binary packages=['python3-biom-format'] D: dh_python3 dh_python3:204: processing package python3-biom-format... D: dh_python3 fs:52: moving files from debian/python3-biom-format/usr/lib/python3.11/dist-packages to debian/python3-biom-format/usr/lib/python3/dist-packages/ D: dh_python3 fs:400: package python3-biom-format details = {'requires.txt': {'debian/python3-biom-format/usr/lib/python3/dist-packages/biom_format-2.1.12.egg-info/requires.txt'}, 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.11')}, 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-biom-format D: dh_python3 pydist:173: trying to find dependency for click (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for cython (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for cython>=0.29 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for h5py (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for numpy>=1.9.2 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for pandas>=0.20.0 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for scipy>=1.3.1 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 depends:281: D={'python3-numpy', 'python3-click', 'python3-scipy', 'python3-pandas', 'cython3', 'python3-h5py', 'python3:any', 'python3 (<< 3.12)', 'python3 (>= 3.11~)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild install -m0755 -d debian/python-biom-format-doc/usr/share/lintian/overrides install -p -m0644 debian/python-biom-format-doc.lintian-overrides debian/python-biom-format-doc/usr/share/lintian/overrides/python-biom-format-doc dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/_sphinx_javascript_frameworks_compat.js ln -s ../../../../javascript/sphinxdoc/1.0/_sphinx_javascript_frameworks_compat.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/_sphinx_javascript_frameworks_compat.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js ln -s ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/jquery.js ln -s ../../../../javascript/sphinxdoc/1.0/jquery.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/jquery.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/underscore.js ln -s ../../../../javascript/sphinxdoc/1.0/underscore.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/underscore.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js ln -s ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js ln -s ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js ln -s ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js dh_strip_nondeterminism -O--buildsystem=pybuild Using 1670091303 as canonical time Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/plus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/file.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/minus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/bullet_orange.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/biom-format.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/bg-page.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/alert_warning_32.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/alert_info_32.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_images/biom-format.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild cd debian/python3-biom-format cd debian/python-biom-format-doc chmod a-x usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1 chmod a-x usr/share/doc/python-biom-format-doc/changelog usr/share/doc/python-biom-format-doc/changelog.Debian gzip -9nf usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1 gzip -9nf usr/share/doc/python-biom-format-doc/changelog usr/share/doc/python-biom-format-doc/changelog.Debian cd '/build/python-biom-format-2.1.12' cd '/build/python-biom-format-2.1.12' rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/build/python-biom-format-2.1.12' dh_fixperms find debian/python3-biom-format ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biom-format-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biom-format/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biom-format/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biom-format-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biom-format-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python-biom-format-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biom-format/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biom-format-doc/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biom-format-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-biom-format/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian -name exercise_cli.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/build/python-biom-format-2.1.12' dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/python3-biom-format/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biom-format.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biom-format.debug -- debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-311-x86_64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-311-x86_64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-311-x86_64-linux-gnu.so objcopy --compress-debug-sections debian/python3-biom-format/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biom-format.debug chmod 0644 -- debian/python3-biom-format/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biom-format.debug dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/02 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-311-x86_64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/02/f1aae230fbff8d8281f2208cf8ce9713d5305d.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/02/f1aae230fbff8d8281f2208cf8ce9713d5305d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-311-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/02/f1aae230fbff8d8281f2208cf8ce9713d5305d.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-311-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/89 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-311-x86_64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/89/0da6686d125cef231a259fddb1b596a3d2de31.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/89/0da6686d125cef231a259fddb1b596a3d2de31.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-311-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/89/0da6686d125cef231a259fddb1b596a3d2de31.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-311-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/04 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-311-x86_64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/04/8f09f89317943e5685afc1af1208a91fcd6628.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/04/8f09f89317943e5685afc1af1208a91fcd6628.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-311-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/04/8f09f89317943e5685afc1af1208a91fcd6628.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-311-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-biom-format/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-biom-format/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-biom-format/usr/lib/debug install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc ln -s python3-biom-format debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc/python3-biom-format-dbgsym install -m0755 -d debian/.debhelper/python3-biom-format dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-biom-format/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/DEBIAN dpkg-shlibdeps -Tdebian/python3-biom-format.substvars debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-311-x86_64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-311-x86_64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-311-x86_64-linux-gnu.so dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/postinst cat debian/python3-biom-format.postinst.debhelper >> debian/python3-biom-format/DEBIAN/postinst chmod 0755 -- debian/python3-biom-format/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/prerm cat debian/python3-biom-format.prerm.debhelper >> debian/python3-biom-format/DEBIAN/prerm chmod 0755 -- debian/python3-biom-format/DEBIAN/prerm install -m0755 -d debian/python-biom-format-doc/DEBIAN dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python-biom-format-doc/DEBIAN echo misc:Depends= >> debian/python-biom-format-doc.substvars echo misc:Pre-Depends= >> debian/python-biom-format-doc.substvars dpkg-gencontrol -ppython-biom-format-doc -ldebian/changelog -Tdebian/python-biom-format-doc.substvars -Pdebian/python-biom-format-doc install -m0755 -d debian/python3-biom-format/DEBIAN echo misc:Depends= >> debian/python3-biom-format.substvars echo misc:Pre-Depends= >> debian/python3-biom-format.substvars install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -Pdebian/.debhelper/python3-biom-format/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=python3-biom-format-dbgsym "-DDepends=python3-biom-format (= \${binary:Version})" "-DDescription=debug symbols for python3-biom-format" "-DBuild-Ids=02f1aae230fbff8d8281f2208cf8ce9713d5305d 048f09f89317943e5685afc1af1208a91fcd6628 890da6686d125cef231a259fddb1b596a3d2de31" -DSection=debug -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: package python-biom-format-doc: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python-biom-format-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined chmod 0644 -- debian/python-biom-format-doc/DEBIAN/control chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -Pdebian/python3-biom-format chmod 0644 -- debian/python3-biom-format/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python-biom-format-doc/DEBIAN install -m0755 -d debian/python3-biom-format/DEBIAN cd debian/python-biom-format-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-biom-format >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-biom-format/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN chmod 0644 -- debian/python-biom-format-doc/DEBIAN/md5sums cd debian/.debhelper/python3-biom-format/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-biom-format .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-biom-format/dbgsym-root .. dpkg-deb --root-owner-group --build debian/python-biom-format-doc .. dpkg-deb: building package 'python3-biom-format' in '../python3-biom-format_2.1.12-3_amd64.deb'. dpkg-deb: building package 'python-biom-format-doc' in '../python-biom-format-doc_2.1.12-3_all.deb'. dpkg-deb: building package 'python3-biom-format-dbgsym' in '../python3-biom-format-dbgsym_2.1.12-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../python-biom-format_2.1.12-3_amd64.buildinfo dpkg-genchanges --build=binary -O../python-biom-format_2.1.12-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3977765/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3977765/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3977765 and its subdirectories I: Current time: Sat May 20 23:53:16 +14 2023 I: pbuilder-time-stamp: 1684576396