I: pbuilder: network access will be disabled during build I: Current time: Tue Jun 4 19:33:20 +14 2024 I: pbuilder-time-stamp: 1717479200 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pyobjcryst_2.2.5-1.dsc] I: copying [./pyobjcryst_2.2.5.orig.tar.gz] I: copying [./pyobjcryst_2.2.5-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Jan 9 05:50:53 2023 +14 gpgv: using EDDSA key EE9AD6F90520FA11F69F4824477B0DB0263A54D8 gpgv: issuer "stefanor@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pyobjcryst_2.2.5-1.dsc: no acceptable signature found dpkg-source: info: extracting pyobjcryst in pyobjcryst-2.2.5 dpkg-source: info: unpacking pyobjcryst_2.2.5.orig.tar.gz dpkg-source: info: unpacking pyobjcryst_2.2.5-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying avoid_gitarchive.patch dpkg-source: info: applying install-layout-deb.patch dpkg-source: info: applying build-pyversion.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/354309/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 4 19:33 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/354309/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/354309/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.15(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DIRSTACK=() DISTRIBUTION=bookworm EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=cc2fe89213284f8b9ff97f9004b26794 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=354309 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XqFknvPQ/pbuilderrc_Qt9H --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XqFknvPQ/b2 --logfile b2/build.log --extrapackages usrmerge pyobjcryst_2.2.5-1.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 24 2023 bash -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp -rwxr-xr-x 1 root root 125640 Jan 6 2023 dash -rwxr-xr-x 1 root root 121904 Sep 21 2022 date -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd -rwxr-xr-x 1 root root 102200 Sep 21 2022 df -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir -rwxr-xr-x 1 root root 88656 Mar 24 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 21 2022 false -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 24 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 25 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 20 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln -rwxr-xr-x 1 root root 53024 Mar 24 2023 login -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls -rwxr-xr-x 1 root root 207168 Mar 24 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 24 2023 more -rwsr-xr-x 1 root root 59704 Mar 24 2023 mount -rwxr-xr-x 1 root root 18744 Mar 24 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd lrwxrwxrwx 1 root root 4 Apr 24 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 3 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 6 2023 sed lrwxrwxrwx 1 root root 9 Jun 4 19:33 sh -> /bin/bash -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty -rwsr-xr-x 1 root root 72000 Mar 24 2023 su -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync -rwxr-xr-x 1 root root 531984 Apr 7 2023 tar -rwxr-xr-x 1 root root 14520 Nov 3 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch -rwxr-xr-x 1 root root 35664 Sep 21 2022 true -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 24 2023 umount -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 24 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/354309/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-setuptools, python3-pkg-resources, python3-all, python3-numpy, scons, python3-all-dev, libboost-all-dev, libobjcryst-dev (>= 2022.1.4) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pkg-resources; however: Package python3-pkg-resources is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on scons; however: Package scons is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-all-dev; however: Package libboost-all-dev is not installed. pbuilder-satisfydepends-dummy depends on libobjcryst-dev (>= 2022.1.4); however: Package libobjcryst-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran-12{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libaec0{a} libann-cctbx0{a} libarchive-zip-perl{a} libblas3{a} libboost-all-dev{a} libboost-atomic-dev{a} libboost-atomic1.74-dev{a} libboost-atomic1.74.0{a} libboost-chrono-dev{a} libboost-chrono1.74-dev{a} libboost-chrono1.74.0{a} libboost-container-dev{a} libboost-container1.74-dev{a} libboost-container1.74.0{a} libboost-context-dev{a} libboost-context1.74-dev{a} libboost-context1.74.0{a} libboost-coroutine-dev{a} libboost-coroutine1.74-dev{a} libboost-coroutine1.74.0{a} libboost-date-time-dev{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-dev{a} libboost-exception-dev{a} libboost-exception1.74-dev{a} libboost-fiber-dev{a} libboost-fiber1.74-dev{a} libboost-fiber1.74.0{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-graph-dev{a} libboost-graph-parallel-dev{a} libboost-graph-parallel1.74-dev{a} libboost-graph-parallel1.74.0{a} libboost-graph1.74-dev{a} libboost-graph1.74.0{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-locale-dev{a} libboost-locale1.74-dev{a} libboost-locale1.74.0{a} libboost-log-dev{a} libboost-log1.74-dev{a} libboost-log1.74.0{a} libboost-math-dev{a} libboost-math1.74-dev{a} libboost-math1.74.0{a} libboost-mpi-dev{a} libboost-mpi-python-dev{a} libboost-mpi-python1.74-dev{a} libboost-mpi-python1.74.0{a} libboost-mpi1.74-dev{a} libboost-mpi1.74.0{a} libboost-nowide-dev{a} libboost-nowide1.74-dev{a} libboost-nowide1.74.0{a} libboost-numpy-dev{a} libboost-numpy1.74-dev{a} libboost-numpy1.74.0{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-python-dev{a} libboost-python1.74-dev{a} libboost-python1.74.0{a} libboost-random-dev{a} libboost-random1.74-dev{a} libboost-random1.74.0{a} libboost-regex-dev{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization-dev{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-stacktrace-dev{a} libboost-stacktrace1.74-dev{a} libboost-stacktrace1.74.0{a} libboost-system-dev{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost-test-dev{a} libboost-test1.74-dev{a} libboost-test1.74.0{a} libboost-thread-dev{a} libboost-thread1.74-dev{a} libboost-thread1.74.0{a} libboost-timer-dev{a} libboost-timer1.74-dev{a} libboost-timer1.74.0{a} libboost-tools-dev{a} libboost-type-erasure-dev{a} libboost-type-erasure1.74-dev{a} libboost-type-erasure1.74.0{a} libboost-wave-dev{a} libboost-wave1.74-dev{a} libboost-wave1.74.0{a} libboost1.74-dev{a} libboost1.74-tools-dev{a} libbrotli1{a} libbsd0{a} libcbf1{a} libcbor0.8{a} libccp4-data{a} libccp4c0{a} libcctbx0{a} libcurl4{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a} libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-12-dev{a} libgfortran5{a} libhdf5-103-1{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu72{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} libldap-2.5-0{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmunge2{a} libnewmat10ldbl{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libobjcryst-dev{a} libobjcryst0{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix-dev{a} libpmix2{a} libpsl5{a} libpsm-infinipath1{a} libpsm2-2{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} librdmacm1{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libsz2{a} libtool{a} libuchardet0{a} libucx0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} scons{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libcoarrays-openmpi-dev libldap-common libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget xauth 0 packages upgraded, 233 newly installed, 0 to remove and 0 not upgraded. Need to get 116 MB of archives. After unpacking 685 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 libcbor0.8 amd64 0.8.0-2+b1 [27.4 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libfido2-1 amd64 1.12.0-2+b1 [77.2 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 openssh-client amd64 1:9.2p1-2 [988 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-2 [131 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libgfortran-12-dev amd64 12.2.0-14 [834 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 gfortran-12 amd64 12.2.0-14 [10.2 MB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 libnl-3-200 amd64 3.7.0-0.2+b1 [63.1 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libnl-route-3-200 amd64 3.7.0-0.2+b1 [185 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libibverbs1 amd64 44.0-2 [60.7 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 ibverbs-providers amd64 44.0-2 [335 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 icu-devtools amd64 72.1-3 [206 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libaec0 amd64 1.0.6-1+b1 [21.1 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 libann-cctbx0 amd64 1.1.2+doc-9+b1 [32.4 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-20 [9510 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-tools-dev amd64 1.74.0+ds1-20 [1428 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libboost-tools-dev amd64 1.74.0.3 [4508 B] Get: 65 http://deb.debian.org/debian bookworm/main amd64 libboost-atomic1.74.0 amd64 1.74.0+ds1-20 [220 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libboost-atomic1.74-dev amd64 1.74.0+ds1-20 [221 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 libboost-atomic-dev amd64 1.74.0.3 [4640 B] Get: 68 http://deb.debian.org/debian bookworm/main amd64 libboost-chrono1.74.0 amd64 1.74.0+ds1-20 [228 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 libboost-chrono1.74-dev amd64 1.74.0+ds1-20 [235 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 libboost-chrono-dev amd64 1.74.0.3 [4960 B] Get: 71 http://deb.debian.org/debian bookworm/main amd64 libboost-container1.74.0 amd64 1.74.0+ds1-20 [246 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 libboost-container1.74-dev amd64 1.74.0+ds1-20 [250 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 libboost-container-dev amd64 1.74.0.3 [4812 B] Get: 74 http://deb.debian.org/debian bookworm/main amd64 libboost-date-time1.74.0 amd64 1.74.0+ds1-20 [217 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 libboost-serialization1.74.0 amd64 1.74.0+ds1-20 [318 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libboost-serialization1.74-dev amd64 1.74.0+ds1-20 [359 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libboost-date-time1.74-dev amd64 1.74.0+ds1-20 [226 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 libboost-system1.74.0 amd64 1.74.0+ds1-20 [218 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libboost-system1.74-dev amd64 1.74.0+ds1-20 [219 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libboost-thread1.74.0 amd64 1.74.0+ds1-20 [257 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libboost-thread1.74-dev amd64 1.74.0+ds1-20 [266 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libboost-context1.74.0 amd64 1.74.0+ds1-20 [219 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 libboost-context1.74-dev amd64 1.74.0+ds1-20 [220 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 libboost-context-dev amd64 1.74.0.3 [4540 B] Get: 85 http://deb.debian.org/debian bookworm/main amd64 libboost-coroutine1.74.0 amd64 1.74.0+ds1-20 [234 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 libboost-coroutine1.74-dev amd64 1.74.0+ds1-20 [241 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 libboost-coroutine-dev amd64 1.74.0.3 [4608 B] Get: 88 http://deb.debian.org/debian bookworm/main amd64 libboost-date-time-dev amd64 1.74.0.3 [4332 B] Get: 89 http://deb.debian.org/debian bookworm/main amd64 libboost-exception1.74-dev amd64 1.74.0+ds1-20 [217 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 libboost-exception-dev amd64 1.74.0.3 [4320 B] Get: 91 http://deb.debian.org/debian bookworm/main amd64 libboost-filesystem1.74.0 amd64 1.74.0+ds1-20 [258 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 libboost-filesystem1.74-dev amd64 1.74.0+ds1-20 [279 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 libboost-fiber1.74.0 amd64 1.74.0+ds1-20 [240 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 libboost-fiber1.74-dev amd64 1.74.0+ds1-20 [251 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 libboost-fiber-dev amd64 1.74.0.3 [4764 B] Get: 96 http://deb.debian.org/debian bookworm/main amd64 libboost-filesystem-dev amd64 1.74.0.3 [4368 B] Get: 97 http://deb.debian.org/debian bookworm/main amd64 libboost-regex1.74.0 amd64 1.74.0+ds1-20 [487 kB] Get: 98 http://deb.debian.org/debian bookworm/main amd64 libboost-graph1.74.0 amd64 1.74.0+ds1-20 [301 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 libicu-dev amd64 72.1-3 [10.3 MB] Get: 100 http://deb.debian.org/debian bookworm/main amd64 libboost-regex1.74-dev amd64 1.74.0+ds1-20 [558 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 libboost-test1.74.0 amd64 1.74.0+ds1-20 [453 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 libboost-test1.74-dev amd64 1.74.0+ds1-20 [526 kB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 libboost-graph1.74-dev amd64 1.74.0+ds1-20 [1480 kB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 libboost-graph-dev amd64 1.74.0.3 [4436 B] Get: 105 http://deb.debian.org/debian bookworm/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-8 [131 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-8 [53.6 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.2 [168 kB] Get: 108 http://deb.debian.org/debian bookworm/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB] Get: 109 http://deb.debian.org/debian bookworm/main amd64 libpsm2-2 amd64 11.2.185-2 [180 kB] Get: 110 http://deb.debian.org/debian bookworm/main amd64 librdmacm1 amd64 44.0-2 [68.6 kB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 libfabric1 amd64 1.17.0-3 [627 kB] Get: 112 http://deb.debian.org/debian bookworm/main amd64 libhwloc15 amd64 2.9.0-1 [154 kB] Get: 113 http://deb.debian.org/debian bookworm/main amd64 libmunge2 amd64 0.5.15-2 [19.5 kB] Get: 114 http://deb.debian.org/debian bookworm/main amd64 libpciaccess0 amd64 0.17-2 [51.4 kB] Get: 115 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 116 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 117 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 118 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2 [292 kB] Get: 119 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2 [759 kB] Get: 120 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 121 http://deb.debian.org/debian bookworm/main amd64 libxnvctrl0 amd64 525.85.05-1 [13.3 kB] Get: 122 http://deb.debian.org/debian bookworm/main amd64 ocl-icd-libopencl1 amd64 2.3.1-1 [43.0 kB] Get: 123 http://deb.debian.org/debian bookworm/main amd64 libhwloc-plugins amd64 2.9.0-1 [17.5 kB] Get: 124 http://deb.debian.org/debian bookworm/main amd64 libpmix2 amd64 4.2.2-1+b1 [622 kB] Get: 125 http://deb.debian.org/debian bookworm/main amd64 libucx0 amd64 1.13.1-1 [860 kB] Get: 126 http://deb.debian.org/debian bookworm/main amd64 libopenmpi3 amd64 4.1.4-3+b1 [2422 kB] Get: 127 http://deb.debian.org/debian bookworm/main amd64 libboost-mpi1.74.0 amd64 1.74.0+ds1-20 [257 kB] Get: 128 http://deb.debian.org/debian bookworm/main amd64 libboost-graph-parallel1.74.0 amd64 1.74.0+ds1-20 [266 kB] Get: 129 http://deb.debian.org/debian bookworm/main amd64 libboost-graph-parallel1.74-dev amd64 1.74.0+ds1-20 [270 kB] Get: 130 http://deb.debian.org/debian bookworm/main amd64 libboost-graph-parallel-dev amd64 1.74.0.3 [4460 B] Get: 131 http://deb.debian.org/debian bookworm/main amd64 libboost-iostreams1.74-dev amd64 1.74.0+ds1-20 [248 kB] Get: 132 http://deb.debian.org/debian bookworm/main amd64 libboost-iostreams-dev amd64 1.74.0.3 [4316 B] Get: 133 http://deb.debian.org/debian bookworm/main amd64 libboost-locale1.74.0 amd64 1.74.0+ds1-20 [449 kB] Get: 134 http://deb.debian.org/debian bookworm/main amd64 libboost-locale1.74-dev amd64 1.74.0+ds1-20 [550 kB] Get: 135 http://deb.debian.org/debian bookworm/main amd64 libboost-locale-dev amd64 1.74.0.3 [4660 B] Get: 136 http://deb.debian.org/debian bookworm/main amd64 libboost-log1.74.0 amd64 1.74.0+ds1-20 [598 kB] Get: 137 http://deb.debian.org/debian bookworm/main amd64 libboost-log1.74-dev amd64 1.74.0+ds1-20 [784 kB] Get: 138 http://deb.debian.org/debian bookworm/main amd64 libboost-log-dev amd64 1.74.0.3 [4540 B] Get: 139 http://deb.debian.org/debian bookworm/main amd64 libboost-math1.74.0 amd64 1.74.0+ds1-20 [490 kB] Get: 140 http://deb.debian.org/debian bookworm/main amd64 libboost-math1.74-dev amd64 1.74.0+ds1-20 [564 kB] Get: 141 http://deb.debian.org/debian bookworm/main amd64 libboost-math-dev amd64 1.74.0.3 [4532 B] Get: 142 http://deb.debian.org/debian bookworm/main amd64 openmpi-common all 4.1.4-3 [167 kB] Get: 143 http://deb.debian.org/debian bookworm/main amd64 libnl-3-dev amd64 3.7.0-0.2+b1 [104 kB] Get: 144 http://deb.debian.org/debian bookworm/main amd64 libnl-route-3-dev amd64 3.7.0-0.2+b1 [203 kB] Get: 145 http://deb.debian.org/debian bookworm/main amd64 libibverbs-dev amd64 44.0-2 [633 kB] Get: 146 http://deb.debian.org/debian bookworm/main amd64 libnuma-dev amd64 2.0.16-1 [35.0 kB] Get: 147 http://deb.debian.org/debian bookworm/main amd64 libltdl7 amd64 2.4.7-5 [393 kB] Get: 148 http://deb.debian.org/debian bookworm/main amd64 libltdl-dev amd64 2.4.7-5 [164 kB] Get: 149 http://deb.debian.org/debian bookworm/main amd64 libhwloc-dev amd64 2.9.0-1 [241 kB] Get: 150 http://deb.debian.org/debian bookworm/main amd64 libevent-2.1-7 amd64 2.1.12-stable-8 [180 kB] Get: 151 http://deb.debian.org/debian bookworm/main amd64 libevent-extra-2.1-7 amd64 2.1.12-stable-8 [107 kB] Get: 152 http://deb.debian.org/debian bookworm/main amd64 libevent-openssl-2.1-7 amd64 2.1.12-stable-8 [60.6 kB] Get: 153 http://deb.debian.org/debian bookworm/main amd64 libevent-dev amd64 2.1.12-stable-8 [305 kB] Get: 154 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 155 http://deb.debian.org/debian bookworm/main amd64 libpmix-dev amd64 4.2.2-1+b1 [902 kB] Get: 156 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 157 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 158 http://deb.debian.org/debian bookworm/main amd64 openmpi-bin amd64 4.1.4-3+b1 [226 kB] Get: 159 http://deb.debian.org/debian bookworm/main amd64 libopenmpi-dev amd64 4.1.4-3+b1 [970 kB] Get: 160 http://deb.debian.org/debian bookworm/main amd64 mpi-default-dev amd64 1.14 [5548 B] Get: 161 http://deb.debian.org/debian bookworm/main amd64 libboost-mpi1.74-dev amd64 1.74.0+ds1-20 [277 kB] Get: 162 http://deb.debian.org/debian bookworm/main amd64 libboost-mpi-dev amd64 1.74.0.3 [4420 B] Get: 163 http://deb.debian.org/debian bookworm/main amd64 libboost-python1.74.0 amd64 1.74.0+ds1-20 [289 kB] Get: 164 http://deb.debian.org/debian bookworm/main amd64 mpi-default-bin amd64 1.14 [4752 B] Get: 165 http://deb.debian.org/debian bookworm/main amd64 libboost-mpi-python1.74.0 amd64 1.74.0+ds1-20 [341 kB] Get: 166 http://deb.debian.org/debian bookworm/main amd64 libboost-mpi-python1.74-dev amd64 1.74.0+ds1-20 [224 kB] Get: 167 http://deb.debian.org/debian bookworm/main amd64 libboost-mpi-python-dev amd64 1.74.0.3 [4456 B] Get: 168 http://deb.debian.org/debian bookworm/main amd64 libboost-numpy1.74.0 amd64 1.74.0+ds1-20 [228 kB] Get: 169 http://deb.debian.org/debian bookworm/main amd64 libboost-numpy1.74-dev amd64 1.74.0+ds1-20 [232 kB] Get: 170 http://deb.debian.org/debian bookworm/main amd64 libboost-numpy-dev amd64 1.74.0.3 [4376 B] Get: 171 http://deb.debian.org/debian bookworm/main amd64 libboost-program-options1.74.0 amd64 1.74.0+ds1-20 [328 kB] Get: 172 http://deb.debian.org/debian bookworm/main amd64 libboost-program-options1.74-dev amd64 1.74.0+ds1-20 [358 kB] Get: 173 http://deb.debian.org/debian bookworm/main amd64 libboost-program-options-dev amd64 1.74.0.3 [4340 B] Get: 174 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get: 175 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get: 176 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get: 177 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get: 178 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get: 179 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 180 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 181 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get: 182 http://deb.debian.org/debian bookworm/main amd64 libboost-python1.74-dev amd64 1.74.0+ds1-20 [310 kB] Get: 183 http://deb.debian.org/debian bookworm/main amd64 libboost-python-dev amd64 1.74.0.3 [4632 B] Get: 184 http://deb.debian.org/debian bookworm/main amd64 libboost-random1.74.0 amd64 1.74.0+ds1-20 [226 kB] Get: 185 http://deb.debian.org/debian bookworm/main amd64 libboost-random1.74-dev amd64 1.74.0+ds1-20 [229 kB] Get: 186 http://deb.debian.org/debian bookworm/main amd64 libboost-random-dev amd64 1.74.0.3 [4336 B] Get: 187 http://deb.debian.org/debian bookworm/main amd64 libboost-regex-dev amd64 1.74.0.3 [4600 B] Get: 188 http://deb.debian.org/debian bookworm/main amd64 libboost-serialization-dev amd64 1.74.0.3 [4560 B] Get: 189 http://deb.debian.org/debian bookworm/main amd64 libboost-stacktrace1.74.0 amd64 1.74.0+ds1-20 [260 kB] Get: 190 http://deb.debian.org/debian bookworm/main amd64 libboost-stacktrace1.74-dev amd64 1.74.0+ds1-20 [232 kB] Get: 191 http://deb.debian.org/debian bookworm/main amd64 libboost-stacktrace-dev amd64 1.74.0.3 [4328 B] Get: 192 http://deb.debian.org/debian bookworm/main amd64 libboost-system-dev amd64 1.74.0.3 [4468 B] Get: 193 http://deb.debian.org/debian bookworm/main amd64 libboost-test-dev amd64 1.74.0.3 [4368 B] Get: 194 http://deb.debian.org/debian bookworm/main amd64 libboost-thread-dev amd64 1.74.0.3 [4356 B] Get: 195 http://deb.debian.org/debian bookworm/main amd64 libboost-timer1.74.0 amd64 1.74.0+ds1-20 [226 kB] Get: 196 http://deb.debian.org/debian bookworm/main amd64 libboost-timer1.74-dev amd64 1.74.0+ds1-20 [229 kB] Get: 197 http://deb.debian.org/debian bookworm/main amd64 libboost-timer-dev amd64 1.74.0.3 [4456 B] Get: 198 http://deb.debian.org/debian bookworm/main amd64 libboost-type-erasure1.74.0 amd64 1.74.0+ds1-20 [233 kB] Get: 199 http://deb.debian.org/debian bookworm/main amd64 libboost-type-erasure1.74-dev amd64 1.74.0+ds1-20 [236 kB] Get: 200 http://deb.debian.org/debian bookworm/main amd64 libboost-type-erasure-dev amd64 1.74.0.3 [4428 B] Get: 201 http://deb.debian.org/debian bookworm/main amd64 libboost-wave1.74.0 amd64 1.74.0+ds1-20 [418 kB] Get: 202 http://deb.debian.org/debian bookworm/main amd64 libboost-wave1.74-dev amd64 1.74.0+ds1-20 [472 kB] Get: 203 http://deb.debian.org/debian bookworm/main amd64 libboost-wave-dev amd64 1.74.0.3 [4360 B] Get: 204 http://deb.debian.org/debian bookworm/main amd64 libboost-nowide1.74.0 amd64 1.74.0+ds1-20 [219 kB] Get: 205 http://deb.debian.org/debian bookworm/main amd64 libboost-nowide1.74-dev amd64 1.74.0+ds1-20 [221 kB] Get: 206 http://deb.debian.org/debian bookworm/main amd64 libboost-nowide-dev amd64 1.74.0.3 [4392 B] Get: 207 http://deb.debian.org/debian bookworm/main amd64 libboost-all-dev amd64 1.74.0.3 [4680 B] Get: 208 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 209 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 210 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 211 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 212 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 213 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 214 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 215 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 216 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-9 [386 kB] Get: 217 http://deb.debian.org/debian bookworm/main amd64 libsz2 amd64 1.0.6-1+b1 [7804 B] Get: 218 http://deb.debian.org/debian bookworm/main amd64 libhdf5-103-1 amd64 1.10.8+repack1-1 [1237 kB] Get: 219 http://deb.debian.org/debian bookworm/main amd64 libcbf1 amd64 0.9.7+dfsg1-2+b2 [353 kB] Get: 220 http://deb.debian.org/debian bookworm/main amd64 libccp4-data all 8.0.0-2 [62.3 kB] Get: 221 http://deb.debian.org/debian bookworm/main amd64 libccp4c0 amd64 8.0.0-2 [88.5 kB] Get: 222 http://deb.debian.org/debian bookworm/main amd64 libcctbx0 amd64 2022.9+ds2+~3.11.2+ds1-6+b1 [2369 kB] Get: 223 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get: 224 http://deb.debian.org/debian bookworm/main amd64 libnewmat10ldbl amd64 1.10.4-8 [147 kB] Get: 225 http://deb.debian.org/debian bookworm/main amd64 libobjcryst0 amd64 2022.1.4+ds1-2 [718 kB] Get: 226 http://deb.debian.org/debian bookworm/main amd64 libobjcryst-dev amd64 2022.1.4+ds1-2 [99.9 kB] Get: 227 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get: 228 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get: 229 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get: 230 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 231 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get: 232 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Get: 233 http://deb.debian.org/debian bookworm/main amd64 scons all 4.4.0+dfsg-1 [663 kB] Fetched 116 MB in 4s (32.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. 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Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20346 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ... 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Unpacking libboost-chrono-dev:amd64 (1.74.0.3) ... Selecting previously unselected package libboost-container1.74.0:amd64. Preparing to unpack .../060-libboost-container1.74.0_1.74.0+ds1-20_amd64.deb ... Unpacking libboost-container1.74.0:amd64 (1.74.0+ds1-20) ... Selecting previously unselected package libboost-container1.74-dev:amd64. Preparing to unpack .../061-libboost-container1.74-dev_1.74.0+ds1-20_amd64.deb ... Unpacking libboost-container1.74-dev:amd64 (1.74.0+ds1-20) ... Selecting previously unselected package libboost-container-dev:amd64. Preparing to unpack .../062-libboost-container-dev_1.74.0.3_amd64.deb ... Unpacking libboost-container-dev:amd64 (1.74.0.3) ... Selecting previously unselected package libboost-date-time1.74.0:amd64. Preparing to unpack .../063-libboost-date-time1.74.0_1.74.0+ds1-20_amd64.deb ... Unpacking libboost-date-time1.74.0:amd64 (1.74.0+ds1-20) ... Selecting previously unselected package libboost-serialization1.74.0:amd64. 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Not building database; man-db/auto-update is not 'true'. Setting up libxnvctrl0:amd64 (525.85.05-1) ... Setting up libboost-iostreams1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up libnl-route-3-dev:amd64 (3.7.0-0.2+b1) ... Setting up libboost-date-time1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up libboost-graph1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up libboost-numpy-dev (1.74.0.3) ... Setting up libboost-serialization-dev:amd64 (1.74.0.3) ... Setting up libboost-date-time-dev:amd64 (1.74.0.3) ... Setting up libhdf5-103-1:amd64 (1.10.8+repack1-1) ... Setting up libboost-thread1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up libboost-thread-dev:amd64 (1.74.0.3) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up librdmacm1:amd64 (44.0-2) ... Setting up libboost-graph-dev:amd64 (1.74.0.3) ... Setting up python3.11 (3.11.2-6) ... Setting up libucx0:amd64 (1.13.1-1) ... Setting up libboost-log1.74-dev (1.74.0+ds1-20) ... Setting up libpython3.11:amd64 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up libboost-iostreams-dev:amd64 (1.74.0.3) ... Setting up libibverbs-dev:amd64 (44.0-2) ... Setting up libhwloc-plugins:amd64 (2.9.0-1) ... Setting up libboost-context1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up libcbf1:amd64 (0.9.7+dfsg1-2+b2) ... Setting up libboost-fiber1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up libboost-type-erasure1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up libpython3.11-dev:amd64 (3.11.2-6) ... Setting up libboost-locale1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up libboost-coroutine1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up libboost-coroutine-dev:amd64 (1.74.0.3) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up libboost-log-dev (1.74.0.3) ... Setting up libboost-fiber-dev:amd64 (1.74.0.3) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-2) ... Setting up dh-python (5.20230130) ... Setting up libcctbx0 (2022.9+ds2+~3.11.2+ds1-6+b1) ... Setting up libfabric1:amd64 (1.17.0-3) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up libpmix2:amd64 (4.2.2-1+b1) ... Setting up python3.11-dev (3.11.2-6) ... Setting up libopenmpi3:amd64 (4.1.4-3+b1) ... Setting up libobjcryst0 (2022.1.4+ds1-2) ... Setting up libboost-mpi1.74.0 (1.74.0+ds1-20) ... Setting up python3-all (3.11.2-1+b1) ... Setting up libboost-locale-dev:amd64 (1.74.0.3) ... Setting up libboost-context-dev:amd64 (1.74.0.3) ... Setting up libboost-type-erasure-dev:amd64 (1.74.0.3) ... Setting up libpython3-all-dev:amd64 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up scons (4.4.0+dfsg-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up libboost-graph-parallel1.74.0 (1.74.0+ds1-20) ... Setting up libobjcryst-dev (2022.1.4+ds1-2) ... Setting up libpmix-dev:amd64 (4.2.2-1+b1) ... Setting up openmpi-bin (4.1.4-3+b1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up python3-all-dev (3.11.2-1+b1) ... Setting up mpi-default-bin (1.14) ... Setting up libboost-python1.74-dev (1.74.0+ds1-20) ... Setting up libboost-python-dev (1.74.0.3) ... Setting up libboost-graph-parallel1.74-dev (1.74.0+ds1-20) ... Setting up libopenmpi-dev:amd64 (4.1.4-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libboost-mpi-python1.74.0 (1.74.0+ds1-20) ... Setting up libboost-graph-parallel-dev (1.74.0.3) ... Setting up mpi-default-dev (1.14) ... Setting up libboost-mpi1.74-dev (1.74.0+ds1-20) ... Setting up libboost-mpi-python1.74-dev (1.74.0+ds1-20) ... Setting up libboost-mpi-python-dev (1.74.0.3) ... Setting up libboost-mpi-dev (1.74.0.3) ... Setting up libboost-all-dev (1.74.0.3) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... usrmerge is already the newest version (35). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/354309/tmp/hooks/A99_set_merged_usr starting Re-configuring usrmerge... removed '/etc/unsupported-skip-usrmerge-conversion' The system has been successfully converted. I: user script /srv/workspace/pbuilder/354309/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/pyobjcryst-2.2.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pyobjcryst_2.2.5-1_source.changes dpkg-buildpackage: info: source package pyobjcryst dpkg-buildpackage: info: source version 2.2.5-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Stefano Rivera dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from pyobjcryst-2.2.5/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with numpy3,python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/pyobjcryst-2.2.5' dh_clean rm -f -r src/pyobjcryst/version.cfg src/pyobjcryst.egg-info/ .pybuild build/ rm -f -r .sconf_temp/ .sconsign.dblite config.log src/pyobjcryst/_pyobjcryst.so find . -name "*.pyc" -delete rm -f -r dist src/pyobjcryst/_pyobjcryst.* .pytest_cache/ debian/pyobjcryst make[1]: Leaving directory '/build/pyobjcryst-2.2.5' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with numpy3,python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild W: pybuild base:269: missing command (plugin=custom, method=configure, interpreter=python3.11, version=3.11) dh_auto_build -O--buildsystem=pybuild I: pybuild pybuild:307: mkdir -p debian/pyobjcryst I: pybuild base:240: scons python=/usr/bin/python3.11 build=debug develop prefix=debian/pyobjcryst scons: Reading SConscript files ... :1: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html Checking if compiler allows '-fstack-protector-strong'... yes Checking if compiler allows '-fwrapv'... yes Checking if compiler allows '-fno-strict-aliasing'... yes Checking for C++ library ObjCryst... yes Checking for C++ library boost_python311... yes scons: done reading SConscript files. scons: Building targets ... /usr/bin/python3.11 -Wignore setup.py egg_info running egg_info writing src/pyobjcryst.egg-info/PKG-INFO writing dependency_links to src/pyobjcryst.egg-info/dependency_links.txt writing requirements to src/pyobjcryst.egg-info/requires.txt writing top-level names to src/pyobjcryst.egg-info/top_level.txt writing manifest file 'src/pyobjcryst.egg-info/SOURCES.txt' reading manifest file 'src/pyobjcryst.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found under directory 'src' warning: no previously-included files matching '*.so' found under directory 'src' warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitarchive.cfg' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files found matching 'setup.cfg' warning: no previously-included files found matching '.coveragerc' warning: no previously-included files found matching '.travis*' no previously-included directories found matching 'conda-recipe' no previously-included directories found matching 'devutils' no previously-included directories found matching 'doc' adding license file 'LICENSE.txt' adding license file 'LICENSE_DANSE.txt' adding license file 'AUTHORS.txt' writing manifest file 'src/pyobjcryst.egg-info/SOURCES.txt' g++ -o build/debug-3.11/asymmetricunit_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/asymmetricunit_ext.cpp g++ -o build/debug-3.11/atom_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/atom_ext.cpp g++ -o build/debug-3.11/crystal_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/crystal_ext.cpp In file included from build/debug-3.11/crystal_ext.cpp:46: build/debug-3.11/python_streambuf.hpp: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()': build/debug-3.11/python_streambuf.hpp:530:7: warning: 'throw' will always call 'terminate' [-Wterminate] 530 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 531 | "Problem closing python ostream.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | " Known limitation: the error is unrecoverable. Sorry.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | " Suggestion for programmer: add ostream.flush() before" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | " returning."); | ~~~~~~~~~~~~~~ build/debug-3.11/python_streambuf.hpp:530:7: note: in C++11 destructors default to 'noexcept' g++ -o build/debug-3.11/diffractiondatasinglecrystal_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/diffractiondatasinglecrystal_ext.cpp In file included from build/debug-3.11/diffractiondatasinglecrystal_ext.cpp:32: build/debug-3.11/python_streambuf.hpp: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()': build/debug-3.11/python_streambuf.hpp:530:7: warning: 'throw' will always call 'terminate' [-Wterminate] 530 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 531 | "Problem closing python ostream.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | " Known limitation: the error is unrecoverable. Sorry.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | " Suggestion for programmer: add ostream.flush() before" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | " returning."); | ~~~~~~~~~~~~~~ build/debug-3.11/python_streambuf.hpp:530:7: note: in C++11 destructors default to 'noexcept' g++ -o build/debug-3.11/general_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/general_ext.cpp g++ -o build/debug-3.11/globaloptim_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/globaloptim_ext.cpp g++ -o build/debug-3.11/globalscatteringpower_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/globalscatteringpower_ext.cpp g++ -o build/debug-3.11/helpers.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/helpers.cpp g++ -o build/debug-3.11/indexing_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/indexing_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from build/debug-3.11/indexing_ext.cpp:17: /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from build/debug-3.11/indexing_ext.cpp:35: build/debug-3.11/python_streambuf.hpp: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()': build/debug-3.11/python_streambuf.hpp:530:7: warning: 'throw' will always call 'terminate' [-Wterminate] 530 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 531 | "Problem closing python ostream.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | " Known limitation: the error is unrecoverable. Sorry.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | " Suggestion for programmer: add ostream.flush() before" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | " returning."); | ~~~~~~~~~~~~~~ build/debug-3.11/python_streambuf.hpp:530:7: note: in C++11 destructors default to 'noexcept' g++ -o build/debug-3.11/io_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/io_ext.cpp In file included from build/debug-3.11/io_ext.cpp:32: build/debug-3.11/python_streambuf.hpp: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()': build/debug-3.11/python_streambuf.hpp:530:7: warning: 'throw' will always call 'terminate' [-Wterminate] 530 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 531 | "Problem closing python ostream.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | " Known limitation: the error is unrecoverable. Sorry.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | " Suggestion for programmer: add ostream.flush() before" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | " returning."); | ~~~~~~~~~~~~~~ build/debug-3.11/python_streambuf.hpp:530:7: note: in C++11 destructors default to 'noexcept' g++ -o build/debug-3.11/lsq_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/lsq_ext.cpp g++ -o build/debug-3.11/molatom_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/molatom_ext.cpp g++ -o build/debug-3.11/molbond_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/molbond_ext.cpp g++ -o build/debug-3.11/molbondangle_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/molbondangle_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from build/debug-3.11/molbondangle_ext.cpp:29: /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o build/debug-3.11/moldihedralangle_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/moldihedralangle_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from build/debug-3.11/moldihedralangle_ext.cpp:23: /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o build/debug-3.11/molecule_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/molecule_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from build/debug-3.11/molecule_ext.cpp:51: /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o build/debug-3.11/objregistry_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/objregistry_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from build/debug-3.11/objregistry_ext.cpp:24: /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o build/debug-3.11/polyhedron_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/polyhedron_ext.cpp g++ -o build/debug-3.11/powderpattern_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/powderpattern_ext.cpp In file included from build/debug-3.11/powderpattern_ext.cpp:33: build/debug-3.11/python_streambuf.hpp: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()': build/debug-3.11/python_streambuf.hpp:530:7: warning: 'throw' will always call 'terminate' [-Wterminate] 530 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 531 | "Problem closing python ostream.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | " Known limitation: the error is unrecoverable. Sorry.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | " Suggestion for programmer: add ostream.flush() before" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | " returning."); | ~~~~~~~~~~~~~~ build/debug-3.11/python_streambuf.hpp:530:7: note: in C++11 destructors default to 'noexcept' g++ -o build/debug-3.11/powderpatternbackground_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/powderpatternbackground_ext.cpp g++ -o build/debug-3.11/powderpatterncomponent_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/powderpatterncomponent_ext.cpp g++ -o build/debug-3.11/powderpatterndiffraction_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/powderpatterndiffraction_ext.cpp g++ -o build/debug-3.11/pyobjcryst.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/pyobjcryst.cpp g++ -o build/debug-3.11/python_streambuf.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/python_streambuf.cpp In file included from build/debug-3.11/python_streambuf.cpp:50: build/debug-3.11/python_streambuf.hpp: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()': build/debug-3.11/python_streambuf.hpp:530:7: warning: 'throw' will always call 'terminate' [-Wterminate] 530 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 531 | "Problem closing python ostream.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | " Known limitation: the error is unrecoverable. Sorry.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | " Suggestion for programmer: add ostream.flush() before" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | " returning."); | ~~~~~~~~~~~~~~ build/debug-3.11/python_streambuf.hpp:530:7: note: in C++11 destructors default to 'noexcept' g++ -o build/debug-3.11/quaternion_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/quaternion_ext.cpp g++ -o build/debug-3.11/radiation_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/radiation_ext.cpp g++ -o build/debug-3.11/refinableobj_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/refinableobj_ext.cpp In file included from build/debug-3.11/refinableobj_ext.cpp:47: build/debug-3.11/python_streambuf.hpp: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()': build/debug-3.11/python_streambuf.hpp:530:7: warning: 'throw' will always call 'terminate' [-Wterminate] 530 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 531 | "Problem closing python ostream.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | " Known limitation: the error is unrecoverable. Sorry.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | " Suggestion for programmer: add ostream.flush() before" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | " returning."); | ~~~~~~~~~~~~~~ build/debug-3.11/python_streambuf.hpp:530:7: note: in C++11 destructors default to 'noexcept' g++ -o build/debug-3.11/refinableobjclock_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/refinableobjclock_ext.cpp g++ -o build/debug-3.11/refinablepar_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/refinablepar_ext.cpp g++ -o build/debug-3.11/reflectionprofile_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/reflectionprofile_ext.cpp g++ -o build/debug-3.11/refobjopt_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/refobjopt_ext.cpp g++ -o build/debug-3.11/refpartype_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/refpartype_ext.cpp g++ -o build/debug-3.11/registerconverters.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/registerconverters.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from build/debug-3.11/registerconverters.cpp:19: /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o build/debug-3.11/restraint_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/restraint_ext.cpp g++ -o build/debug-3.11/rigidgroup_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/rigidgroup_ext.cpp g++ -o build/debug-3.11/scatterer_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/scatterer_ext.cpp g++ -o build/debug-3.11/scatteringcomponent_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/scatteringcomponent_ext.cpp g++ -o build/debug-3.11/scatteringcomponentlist_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/scatteringcomponentlist_ext.cpp g++ -o build/debug-3.11/scatteringdata_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/scatteringdata_ext.cpp g++ -o build/debug-3.11/scatteringpower_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/scatteringpower_ext.cpp g++ -o build/debug-3.11/scatteringpoweratom_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/scatteringpoweratom_ext.cpp g++ -o build/debug-3.11/scatteringpowersphere_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/scatteringpowersphere_ext.cpp g++ -o build/debug-3.11/spacegroup_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/spacegroup_ext.cpp g++ -o build/debug-3.11/stretchmode_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/stretchmode_ext.cpp g++ -o build/debug-3.11/unitcell_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/unitcell_ext.cpp g++ -o build/debug-3.11/zatom_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/zatom_ext.cpp g++ -o build/debug-3.11/zpolyhedron_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/zpolyhedron_ext.cpp g++ -o build/debug-3.11/zscatterer_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -I/usr/include/python3.11 -Ibuild/debug-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/debug-3.11/zscatterer_ext.cpp In file included from build/debug-3.11/zscatterer_ext.cpp:32: build/debug-3.11/python_streambuf.hpp: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()': build/debug-3.11/python_streambuf.hpp:530:7: warning: 'throw' will always call 'terminate' [-Wterminate] 530 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 531 | "Problem closing python ostream.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | " Known limitation: the error is unrecoverable. Sorry.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | " Suggestion for programmer: add ostream.flush() before" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | " returning."); | ~~~~~~~~~~~~~~ build/debug-3.11/python_streambuf.hpp:530:7: note: in C++11 destructors default to 'noexcept' g++ -o build/debug-3.11/_pyobjcryst.so -shared build/debug-3.11/asymmetricunit_ext.os build/debug-3.11/atom_ext.os build/debug-3.11/crystal_ext.os build/debug-3.11/diffractiondatasinglecrystal_ext.os build/debug-3.11/general_ext.os build/debug-3.11/globaloptim_ext.os build/debug-3.11/globalscatteringpower_ext.os build/debug-3.11/helpers.os build/debug-3.11/indexing_ext.os build/debug-3.11/io_ext.os build/debug-3.11/lsq_ext.os build/debug-3.11/molatom_ext.os build/debug-3.11/molbond_ext.os build/debug-3.11/molbondangle_ext.os build/debug-3.11/moldihedralangle_ext.os build/debug-3.11/molecule_ext.os build/debug-3.11/objregistry_ext.os build/debug-3.11/polyhedron_ext.os build/debug-3.11/powderpattern_ext.os build/debug-3.11/powderpatternbackground_ext.os build/debug-3.11/powderpatterncomponent_ext.os build/debug-3.11/powderpatterndiffraction_ext.os build/debug-3.11/pyobjcryst.os build/debug-3.11/python_streambuf.os build/debug-3.11/quaternion_ext.os build/debug-3.11/radiation_ext.os build/debug-3.11/refinableobj_ext.os build/debug-3.11/refinableobjclock_ext.os build/debug-3.11/refinablepar_ext.os build/debug-3.11/reflectionprofile_ext.os build/debug-3.11/refobjopt_ext.os build/debug-3.11/refpartype_ext.os build/debug-3.11/registerconverters.os build/debug-3.11/restraint_ext.os build/debug-3.11/rigidgroup_ext.os build/debug-3.11/scatterer_ext.os build/debug-3.11/scatteringcomponent_ext.os build/debug-3.11/scatteringcomponentlist_ext.os build/debug-3.11/scatteringdata_ext.os build/debug-3.11/scatteringpower_ext.os build/debug-3.11/scatteringpoweratom_ext.os build/debug-3.11/scatteringpowersphere_ext.os build/debug-3.11/spacegroup_ext.os build/debug-3.11/stretchmode_ext.os build/debug-3.11/unitcell_ext.os build/debug-3.11/zatom_ext.os build/debug-3.11/zpolyhedron_ext.os build/debug-3.11/zscatterer_ext.os -Lbuild/debug-3.11/debian/pyobjcryst/lib -lObjCryst -lboost_python311 Install file: "build/debug-3.11/_pyobjcryst.so" as "src/pyobjcryst/_pyobjcryst.so" scons: done building targets. debian/rules override_dh_auto_test make[1]: Entering directory '/build/pyobjcryst-2.2.5' true make[1]: Leaving directory '/build/pyobjcryst-2.2.5' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-pyobjcryst/ -O--buildsystem=pybuild I: pybuild base:240: scons python=/usr/bin/python3.11 prefix=debian/pyobjcryst install scons: Reading SConscript files ... :1: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html Checking if compiler allows '-fstack-protector-strong'... yes Checking if compiler allows '-fwrapv'... yes Checking if compiler allows '-fno-strict-aliasing'... yes Checking if compiler allows '-ffast-math'... yes Checking for C++ library ObjCryst... yes Checking for C++ library boost_python311... yes scons: done reading SConscript files. scons: Building targets ... g++ -o build/fast-3.11/asymmetricunit_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/asymmetricunit_ext.cpp g++ -o build/fast-3.11/atom_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/atom_ext.cpp g++ -o build/fast-3.11/crystal_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/crystal_ext.cpp In file included from build/fast-3.11/crystal_ext.cpp:46: build/fast-3.11/python_streambuf.hpp: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()': build/fast-3.11/python_streambuf.hpp:530:7: warning: 'throw' will always call 'terminate' [-Wterminate] 530 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 531 | "Problem closing python ostream.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | " Known limitation: the error is unrecoverable. Sorry.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | " Suggestion for programmer: add ostream.flush() before" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | " returning."); | ~~~~~~~~~~~~~~ build/fast-3.11/python_streambuf.hpp:530:7: note: in C++11 destructors default to 'noexcept' In member function 'boost::optional boost_adaptbx::python::streambuf::seekoff_without_calling_python(off_type, std::ios_base::seekdir, std::ios_base::openmode)', inlined from 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)' at build/fast-3.11/python_streambuf.hpp:374:72: build/fast-3.11/python_streambuf.hpp:461:16: warning: 'failure.boost::optional::.boost::optional_detail::tc_optional_base::m_storage' may be used uninitialized [-Wmaybe-uninitialized] 461 | return failure; | ^~~~~~~ build/fast-3.11/python_streambuf.hpp: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)': build/fast-3.11/python_streambuf.hpp:428:39: note: 'failure' declared here 428 | boost::optional const failure; | ^~~~~~~ g++ -o build/fast-3.11/diffractiondatasinglecrystal_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/diffractiondatasinglecrystal_ext.cpp In file included from build/fast-3.11/diffractiondatasinglecrystal_ext.cpp:32: build/fast-3.11/python_streambuf.hpp: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()': build/fast-3.11/python_streambuf.hpp:530:7: warning: 'throw' will always call 'terminate' [-Wterminate] 530 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 531 | "Problem closing python ostream.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | " Known limitation: the error is unrecoverable. Sorry.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | " Suggestion for programmer: add ostream.flush() before" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | " returning."); | ~~~~~~~~~~~~~~ build/fast-3.11/python_streambuf.hpp:530:7: note: in C++11 destructors default to 'noexcept' In member function 'boost::optional boost_adaptbx::python::streambuf::seekoff_without_calling_python(off_type, std::ios_base::seekdir, std::ios_base::openmode)', inlined from 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)' at build/fast-3.11/python_streambuf.hpp:374:72: build/fast-3.11/python_streambuf.hpp:461:16: warning: 'failure.boost::optional::.boost::optional_detail::tc_optional_base::m_storage' may be used uninitialized [-Wmaybe-uninitialized] 461 | return failure; | ^~~~~~~ build/fast-3.11/python_streambuf.hpp: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)': build/fast-3.11/python_streambuf.hpp:428:39: note: 'failure' declared here 428 | boost::optional const failure; | ^~~~~~~ g++ -o build/fast-3.11/general_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/general_ext.cpp g++ -o build/fast-3.11/globaloptim_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/globaloptim_ext.cpp g++ -o build/fast-3.11/globalscatteringpower_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/globalscatteringpower_ext.cpp g++ -o build/fast-3.11/helpers.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/helpers.cpp g++ -o build/fast-3.11/indexing_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/indexing_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from build/fast-3.11/indexing_ext.cpp:17: /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from build/fast-3.11/indexing_ext.cpp:35: build/fast-3.11/python_streambuf.hpp: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()': build/fast-3.11/python_streambuf.hpp:530:7: warning: 'throw' will always call 'terminate' [-Wterminate] 530 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 531 | "Problem closing python ostream.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | " Known limitation: the error is unrecoverable. Sorry.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | " Suggestion for programmer: add ostream.flush() before" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | " returning."); | ~~~~~~~~~~~~~~ build/fast-3.11/python_streambuf.hpp:530:7: note: in C++11 destructors default to 'noexcept' In member function 'boost::optional boost_adaptbx::python::streambuf::seekoff_without_calling_python(off_type, std::ios_base::seekdir, std::ios_base::openmode)', inlined from 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)' at build/fast-3.11/python_streambuf.hpp:374:72: build/fast-3.11/python_streambuf.hpp:461:16: warning: 'failure.boost::optional::.boost::optional_detail::tc_optional_base::m_storage' may be used uninitialized [-Wmaybe-uninitialized] 461 | return failure; | ^~~~~~~ build/fast-3.11/python_streambuf.hpp: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)': build/fast-3.11/python_streambuf.hpp:428:39: note: 'failure' declared here 428 | boost::optional const failure; | ^~~~~~~ g++ -o build/fast-3.11/io_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/io_ext.cpp In file included from build/fast-3.11/io_ext.cpp:32: build/fast-3.11/python_streambuf.hpp: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()': build/fast-3.11/python_streambuf.hpp:530:7: warning: 'throw' will always call 'terminate' [-Wterminate] 530 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 531 | "Problem closing python ostream.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | " Known limitation: the error is unrecoverable. Sorry.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | " Suggestion for programmer: add ostream.flush() before" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | " returning."); | ~~~~~~~~~~~~~~ build/fast-3.11/python_streambuf.hpp:530:7: note: in C++11 destructors default to 'noexcept' In member function 'boost::optional boost_adaptbx::python::streambuf::seekoff_without_calling_python(off_type, std::ios_base::seekdir, std::ios_base::openmode)', inlined from 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)' at build/fast-3.11/python_streambuf.hpp:374:72: build/fast-3.11/python_streambuf.hpp:461:16: warning: 'failure.boost::optional::.boost::optional_detail::tc_optional_base::m_storage' may be used uninitialized [-Wmaybe-uninitialized] 461 | return failure; | ^~~~~~~ build/fast-3.11/python_streambuf.hpp: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)': build/fast-3.11/python_streambuf.hpp:428:39: note: 'failure' declared here 428 | boost::optional const failure; | ^~~~~~~ g++ -o build/fast-3.11/lsq_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/lsq_ext.cpp g++ -o build/fast-3.11/molatom_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/molatom_ext.cpp g++ -o build/fast-3.11/molbond_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/molbond_ext.cpp g++ -o build/fast-3.11/molbondangle_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/molbondangle_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from build/fast-3.11/molbondangle_ext.cpp:29: /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o build/fast-3.11/moldihedralangle_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/moldihedralangle_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from build/fast-3.11/moldihedralangle_ext.cpp:23: /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o build/fast-3.11/molecule_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/molecule_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from build/fast-3.11/molecule_ext.cpp:51: /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o build/fast-3.11/objregistry_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/objregistry_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from build/fast-3.11/objregistry_ext.cpp:24: /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o build/fast-3.11/polyhedron_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/polyhedron_ext.cpp g++ -o build/fast-3.11/powderpattern_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/powderpattern_ext.cpp In file included from build/fast-3.11/powderpattern_ext.cpp:33: build/fast-3.11/python_streambuf.hpp: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()': build/fast-3.11/python_streambuf.hpp:530:7: warning: 'throw' will always call 'terminate' [-Wterminate] 530 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 531 | "Problem closing python ostream.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | " Known limitation: the error is unrecoverable. Sorry.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | " Suggestion for programmer: add ostream.flush() before" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | " returning."); | ~~~~~~~~~~~~~~ build/fast-3.11/python_streambuf.hpp:530:7: note: in C++11 destructors default to 'noexcept' In member function 'boost::optional boost_adaptbx::python::streambuf::seekoff_without_calling_python(off_type, std::ios_base::seekdir, std::ios_base::openmode)', inlined from 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)' at build/fast-3.11/python_streambuf.hpp:374:72: build/fast-3.11/python_streambuf.hpp:461:16: warning: 'failure.boost::optional::.boost::optional_detail::tc_optional_base::m_storage' may be used uninitialized [-Wmaybe-uninitialized] 461 | return failure; | ^~~~~~~ build/fast-3.11/python_streambuf.hpp: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)': build/fast-3.11/python_streambuf.hpp:428:39: note: 'failure' declared here 428 | boost::optional const failure; | ^~~~~~~ g++ -o build/fast-3.11/powderpatternbackground_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/powderpatternbackground_ext.cpp g++ -o build/fast-3.11/powderpatterncomponent_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/powderpatterncomponent_ext.cpp g++ -o build/fast-3.11/powderpatterndiffraction_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/powderpatterndiffraction_ext.cpp g++ -o build/fast-3.11/pyobjcryst.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/pyobjcryst.cpp g++ -o build/fast-3.11/python_streambuf.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/python_streambuf.cpp In file included from build/fast-3.11/python_streambuf.cpp:50: build/fast-3.11/python_streambuf.hpp: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()': build/fast-3.11/python_streambuf.hpp:530:7: warning: 'throw' will always call 'terminate' [-Wterminate] 530 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 531 | "Problem closing python ostream.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | " Known limitation: the error is unrecoverable. Sorry.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | " Suggestion for programmer: add ostream.flush() before" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | " returning."); | ~~~~~~~~~~~~~~ build/fast-3.11/python_streambuf.hpp:530:7: note: in C++11 destructors default to 'noexcept' g++ -o build/fast-3.11/quaternion_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/quaternion_ext.cpp g++ -o build/fast-3.11/radiation_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/radiation_ext.cpp g++ -o build/fast-3.11/refinableobj_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/refinableobj_ext.cpp In file included from build/fast-3.11/refinableobj_ext.cpp:47: build/fast-3.11/python_streambuf.hpp: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()': build/fast-3.11/python_streambuf.hpp:530:7: warning: 'throw' will always call 'terminate' [-Wterminate] 530 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 531 | "Problem closing python ostream.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | " Known limitation: the error is unrecoverable. Sorry.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | " Suggestion for programmer: add ostream.flush() before" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | " returning."); | ~~~~~~~~~~~~~~ build/fast-3.11/python_streambuf.hpp:530:7: note: in C++11 destructors default to 'noexcept' In member function 'boost::optional boost_adaptbx::python::streambuf::seekoff_without_calling_python(off_type, std::ios_base::seekdir, std::ios_base::openmode)', inlined from 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)' at build/fast-3.11/python_streambuf.hpp:374:72: build/fast-3.11/python_streambuf.hpp:461:16: warning: 'failure.boost::optional::.boost::optional_detail::tc_optional_base::m_storage' may be used uninitialized [-Wmaybe-uninitialized] 461 | return failure; | ^~~~~~~ build/fast-3.11/python_streambuf.hpp: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)': build/fast-3.11/python_streambuf.hpp:428:39: note: 'failure' declared here 428 | boost::optional const failure; | ^~~~~~~ g++ -o build/fast-3.11/refinableobjclock_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/refinableobjclock_ext.cpp g++ -o build/fast-3.11/refinablepar_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/refinablepar_ext.cpp g++ -o build/fast-3.11/reflectionprofile_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/reflectionprofile_ext.cpp g++ -o build/fast-3.11/refobjopt_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/refobjopt_ext.cpp g++ -o build/fast-3.11/refpartype_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/refpartype_ext.cpp g++ -o build/fast-3.11/registerconverters.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/registerconverters.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from build/fast-3.11/registerconverters.cpp:19: /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o build/fast-3.11/restraint_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/restraint_ext.cpp g++ -o build/fast-3.11/rigidgroup_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/rigidgroup_ext.cpp g++ -o build/fast-3.11/scatterer_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/scatterer_ext.cpp g++ -o build/fast-3.11/scatteringcomponent_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/scatteringcomponent_ext.cpp g++ -o build/fast-3.11/scatteringcomponentlist_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/scatteringcomponentlist_ext.cpp g++ -o build/fast-3.11/scatteringdata_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/scatteringdata_ext.cpp g++ -o build/fast-3.11/scatteringpower_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/scatteringpower_ext.cpp g++ -o build/fast-3.11/scatteringpoweratom_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/scatteringpoweratom_ext.cpp g++ -o build/fast-3.11/scatteringpowersphere_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/scatteringpowersphere_ext.cpp g++ -o build/fast-3.11/spacegroup_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/spacegroup_ext.cpp g++ -o build/fast-3.11/stretchmode_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/stretchmode_ext.cpp g++ -o build/fast-3.11/unitcell_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/unitcell_ext.cpp g++ -o build/fast-3.11/zatom_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/zatom_ext.cpp g++ -o build/fast-3.11/zpolyhedron_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/zpolyhedron_ext.cpp g++ -o build/fast-3.11/zscatterer_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -fno-strict-aliasing -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.11 -Ibuild/fast-3.11/debian/pyobjcryst/include -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-3.11/zscatterer_ext.cpp In file included from build/fast-3.11/zscatterer_ext.cpp:32: build/fast-3.11/python_streambuf.hpp: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()': build/fast-3.11/python_streambuf.hpp:530:7: warning: 'throw' will always call 'terminate' [-Wterminate] 530 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 531 | "Problem closing python ostream.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | " Known limitation: the error is unrecoverable. Sorry.\n" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | " Suggestion for programmer: add ostream.flush() before" | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | " returning."); | ~~~~~~~~~~~~~~ build/fast-3.11/python_streambuf.hpp:530:7: note: in C++11 destructors default to 'noexcept' In member function 'boost::optional boost_adaptbx::python::streambuf::seekoff_without_calling_python(off_type, std::ios_base::seekdir, std::ios_base::openmode)', inlined from 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)' at build/fast-3.11/python_streambuf.hpp:374:72: build/fast-3.11/python_streambuf.hpp:461:16: warning: 'failure.boost::optional::.boost::optional_detail::tc_optional_base::m_storage' may be used uninitialized [-Wmaybe-uninitialized] 461 | return failure; | ^~~~~~~ build/fast-3.11/python_streambuf.hpp: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)': build/fast-3.11/python_streambuf.hpp:428:39: note: 'failure' declared here 428 | boost::optional const failure; | ^~~~~~~ g++ -o build/fast-3.11/_pyobjcryst.so -s -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/fast-3.11/asymmetricunit_ext.os build/fast-3.11/atom_ext.os build/fast-3.11/crystal_ext.os build/fast-3.11/diffractiondatasinglecrystal_ext.os build/fast-3.11/general_ext.os build/fast-3.11/globaloptim_ext.os build/fast-3.11/globalscatteringpower_ext.os build/fast-3.11/helpers.os build/fast-3.11/indexing_ext.os build/fast-3.11/io_ext.os build/fast-3.11/lsq_ext.os build/fast-3.11/molatom_ext.os build/fast-3.11/molbond_ext.os build/fast-3.11/molbondangle_ext.os build/fast-3.11/moldihedralangle_ext.os build/fast-3.11/molecule_ext.os build/fast-3.11/objregistry_ext.os build/fast-3.11/polyhedron_ext.os build/fast-3.11/powderpattern_ext.os build/fast-3.11/powderpatternbackground_ext.os build/fast-3.11/powderpatterncomponent_ext.os build/fast-3.11/powderpatterndiffraction_ext.os build/fast-3.11/pyobjcryst.os build/fast-3.11/python_streambuf.os build/fast-3.11/quaternion_ext.os build/fast-3.11/radiation_ext.os build/fast-3.11/refinableobj_ext.os build/fast-3.11/refinableobjclock_ext.os build/fast-3.11/refinablepar_ext.os build/fast-3.11/reflectionprofile_ext.os build/fast-3.11/refobjopt_ext.os build/fast-3.11/refpartype_ext.os build/fast-3.11/registerconverters.os build/fast-3.11/restraint_ext.os build/fast-3.11/rigidgroup_ext.os build/fast-3.11/scatterer_ext.os build/fast-3.11/scatteringcomponent_ext.os build/fast-3.11/scatteringcomponentlist_ext.os build/fast-3.11/scatteringdata_ext.os build/fast-3.11/scatteringpower_ext.os build/fast-3.11/scatteringpoweratom_ext.os build/fast-3.11/scatteringpowersphere_ext.os build/fast-3.11/spacegroup_ext.os build/fast-3.11/stretchmode_ext.os build/fast-3.11/unitcell_ext.os build/fast-3.11/zatom_ext.os build/fast-3.11/zpolyhedron_ext.os build/fast-3.11/zscatterer_ext.os -Lbuild/fast-3.11/debian/pyobjcryst/lib -lObjCryst -lboost_python311 resolve_distutils_target(["install"], ["build/fast-3.11/_pyobjcryst.so"]) Mkdir("build/lib.linux-x86_64-cpython-311/pyobjcryst") Copy("build/lib.linux-x86_64-cpython-311/pyobjcryst/_pyobjcryst.cpython-311-x86_64-linux-gnu.so", "build/fast-3.11/_pyobjcryst.so") Touch("build/lib.linux-x86_64-cpython-311/pyobjcryst/_pyobjcryst.cpython-311-x86_64-linux-gnu.so") /usr/bin/python3.11 setup.py install --install-layout=deb --prefix=debian/pyobjcryst /build/pyobjcryst-2.2.5/setup.py:19: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.misc_util import get_numpy_include_dirs running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( /usr/lib/python3/dist-packages/setuptools/command/easy_install.py:146: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools. warnings.warn( Checking .pth file support in debian/pyobjcryst/lib/python3/dist-packages/ /usr/bin/python3.11 -E -c pass TEST FAILED: debian/pyobjcryst/lib/python3/dist-packages/ does NOT support .pth files bad install directory or PYTHONPATH You are attempting to install a package to a directory that is not on PYTHONPATH and which Python does not read ".pth" files from. The installation directory you specified (via --install-dir, --prefix, or the distutils default setting) was: debian/pyobjcryst/lib/python3/dist-packages/ and your PYTHONPATH environment variable currently contains: '' Here are some of your options for correcting the problem: * You can choose a different installation directory, i.e., one that is on PYTHONPATH or supports .pth files * You can add the installation directory to the PYTHONPATH environment variable. (It must then also be on PYTHONPATH whenever you run Python and want to use the package(s) you are installing.) * You can set up the installation directory to support ".pth" files by using one of the approaches described here: https://setuptools.pypa.io/en/latest/deprecated/easy_install.html#custom-installation-locations Please make the appropriate changes for your system and try again. running bdist_egg running egg_info writing src/pyobjcryst.egg-info/PKG-INFO writing dependency_links to src/pyobjcryst.egg-info/dependency_links.txt writing requirements to src/pyobjcryst.egg-info/requires.txt writing top-level names to src/pyobjcryst.egg-info/top_level.txt reading manifest file 'src/pyobjcryst.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found under directory 'src' warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitarchive.cfg' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files found matching 'setup.cfg' warning: no previously-included files found matching '.coveragerc' warning: no previously-included files found matching '.travis*' no previously-included directories found matching 'conda-recipe' no previously-included directories found matching 'devutils' no previously-included directories found matching 'doc' adding license file 'LICENSE.txt' adding license file 'LICENSE_DANSE.txt' adding license file 'AUTHORS.txt' writing manifest file 'src/pyobjcryst.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py copying src/pyobjcryst/zscatterer.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/version.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/utils.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/unitcell.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/spacegroup.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/scatteringpowersphere.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/scatteringpower.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/scatteringdata.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/scatterer.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/reflectionprofile.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/refinableobj.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/radiation.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/powderpattern.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/polyhedron.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/molecule.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/lsq.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/io.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/indexing.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/globals.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/globaloptim.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/general.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/fourier.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/diffractiondatasinglecrystal.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/crystal.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/atom.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst copying src/pyobjcryst/__init__.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst creating build/lib.linux-x86_64-cpython-311/pyobjcryst/tests copying src/pyobjcryst/tests/testutils.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests copying src/pyobjcryst/tests/testspacegroup.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests copying src/pyobjcryst/tests/testrefinableobj.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests copying src/pyobjcryst/tests/testradiation.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests copying src/pyobjcryst/tests/testpowderpattern.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests copying src/pyobjcryst/tests/testmolecule.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests copying src/pyobjcryst/tests/testlsq.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests copying src/pyobjcryst/tests/testindexing.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests copying src/pyobjcryst/tests/testglobaloptim.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests copying src/pyobjcryst/tests/testcrystal.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests copying src/pyobjcryst/tests/testconverters.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests copying src/pyobjcryst/tests/testclocks.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests copying src/pyobjcryst/tests/testcif.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests copying src/pyobjcryst/tests/run.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests copying src/pyobjcryst/tests/pyobjcrysttestutils.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests copying src/pyobjcryst/tests/pyobjcrysttest.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests copying src/pyobjcryst/tests/debug.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests copying src/pyobjcryst/tests/__init__.py -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyobjcryst.tests.testdata' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'pyobjcryst.tests.testdata' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'pyobjcryst.tests.testdata' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'pyobjcryst.tests.testdata' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) copying src/pyobjcryst/version.cfg -> build/lib.linux-x86_64-cpython-311/pyobjcryst creating build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/Ag_silver.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/BaTiO3.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/C_graphite_hex.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/CaF2_fluorite.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/CaTiO3.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/CdSe_cadmoselite.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/CeO2.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/NaCl.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/Ni.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/PbS_galena.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/PbTe.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/Si.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/Si_setting2.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/SrTiO3_tausonite.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/TiO2_anatase.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/TiO2_rutile.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/ZnS_sphalerite.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/ZnS_wurtzite.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/Zn_zinc.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/caffeine.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/cime.fhz -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/lidocainementhol.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/ni.stru -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/paracetamol.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/paracetamol_monomethanolate.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata copying src/pyobjcryst/tests/testdata/paracetamol_monomethanolate_data_single_crystal.cif -> build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata running build_ext creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/version.cfg -> build/bdist.linux-x86_64/egg/pyobjcryst creating build/bdist.linux-x86_64/egg/pyobjcryst/tests creating build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/paracetamol_monomethanolate_data_single_crystal.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/paracetamol_monomethanolate.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/paracetamol.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/ni.stru -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/lidocainementhol.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/cime.fhz -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/caffeine.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/Zn_zinc.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/ZnS_wurtzite.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/ZnS_sphalerite.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/TiO2_rutile.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/TiO2_anatase.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/SrTiO3_tausonite.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/Si_setting2.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/Si.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/PbTe.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/PbS_galena.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/Ni.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/NaCl.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/CeO2.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/CdSe_cadmoselite.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/CaTiO3.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/CaF2_fluorite.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/C_graphite_hex.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/BaTiO3.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testdata/Ag_silver.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/__init__.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/debug.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/pyobjcrysttest.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/pyobjcrysttestutils.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/run.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testcif.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testclocks.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testconverters.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testcrystal.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testglobaloptim.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testindexing.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testlsq.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testmolecule.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testpowderpattern.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testradiation.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testrefinableobj.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testspacegroup.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests copying build/lib.linux-x86_64-cpython-311/pyobjcryst/tests/testutils.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests copying build/lib.linux-x86_64-cpython-311/pyobjcryst/__init__.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/atom.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/crystal.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/diffractiondatasinglecrystal.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/fourier.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/general.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/globaloptim.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/globals.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/indexing.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/io.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/lsq.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/molecule.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/polyhedron.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/powderpattern.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/radiation.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/refinableobj.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/reflectionprofile.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/scatterer.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/scatteringdata.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/scatteringpower.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/scatteringpowersphere.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/spacegroup.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/unitcell.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/utils.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/version.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/zscatterer.py -> build/bdist.linux-x86_64/egg/pyobjcryst copying build/lib.linux-x86_64-cpython-311/pyobjcryst/_pyobjcryst.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/egg/pyobjcryst byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/__init__.py to __init__.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/debug.py to debug.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/pyobjcrysttest.py to pyobjcrysttest.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/pyobjcrysttestutils.py to pyobjcrysttestutils.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/run.py to run.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testcif.py to testcif.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testclocks.py to testclocks.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testconverters.py to testconverters.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testcrystal.py to testcrystal.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testglobaloptim.py to testglobaloptim.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testindexing.py to testindexing.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testlsq.py to testlsq.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testmolecule.py to testmolecule.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testpowderpattern.py to testpowderpattern.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testradiation.py to testradiation.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testrefinableobj.py to testrefinableobj.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testspacegroup.py to testspacegroup.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testutils.py to testutils.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/__init__.py to __init__.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/atom.py to atom.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/crystal.py to crystal.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/diffractiondatasinglecrystal.py to diffractiondatasinglecrystal.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/fourier.py to fourier.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/general.py to general.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/globaloptim.py to globaloptim.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/globals.py to globals.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/indexing.py to indexing.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/io.py to io.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/lsq.py to lsq.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/molecule.py to molecule.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/polyhedron.py to polyhedron.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/powderpattern.py to powderpattern.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/radiation.py to radiation.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/refinableobj.py to refinableobj.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/reflectionprofile.py to reflectionprofile.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/scatterer.py to scatterer.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/scatteringdata.py to scatteringdata.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/scatteringpower.py to scatteringpower.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/scatteringpowersphere.py to scatteringpowersphere.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/spacegroup.py to spacegroup.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/unitcell.py to unitcell.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/utils.py to utils.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/version.py to version.cpython-311.pyc byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/zscatterer.py to zscatterer.cpython-311.pyc creating stub loader for pyobjcryst/_pyobjcryst.cpython-311-x86_64-linux-gnu.so byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/_pyobjcryst.py to _pyobjcryst.cpython-311.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying src/pyobjcryst.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying src/pyobjcryst.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying src/pyobjcryst.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying src/pyobjcryst.egg-info/not-zip-safe -> build/bdist.linux-x86_64/egg/EGG-INFO copying src/pyobjcryst.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying src/pyobjcryst.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO writing build/bdist.linux-x86_64/egg/EGG-INFO/native_libs.txt creating dist creating 'dist/pyobjcryst-2.2.5-py3.11-linux-x86_64.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing pyobjcryst-2.2.5-py3.11-linux-x86_64.egg creating /build/pyobjcryst-2.2.5/debian/pyobjcryst/lib/python3/dist-packages/pyobjcryst-2.2.5-py3.11-linux-x86_64.egg Extracting pyobjcryst-2.2.5-py3.11-linux-x86_64.egg to /build/pyobjcryst-2.2.5/debian/pyobjcryst/lib/python3/dist-packages Installed /build/pyobjcryst-2.2.5/debian/pyobjcryst/lib/python3/dist-packages/pyobjcryst-2.2.5-py3.11-linux-x86_64.egg Processing dependencies for pyobjcryst==2.2.5 Searching for numpy==1.24.2 Best match: numpy 1.24.2 Installing f2py script to debian/pyobjcryst/bin Installing f2py3 script to debian/pyobjcryst/bin Installing f2py3.11 script to debian/pyobjcryst/bin Using /usr/lib/python3/dist-packages Finished processing dependencies for pyobjcryst==2.2.5 scons: done building targets. dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/python3-pyobjcryst/usr/lib/python3/dist-packages/pyobjcryst/_pyobjcryst.cpython-311-x86_64-linux-gnu.so: .debug_info section not present dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_numpy3 -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pyobjcryst' in '../python3-pyobjcryst_2.2.5-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../pyobjcryst_2.2.5-1_amd64.buildinfo dpkg-genchanges --build=binary -O../pyobjcryst_2.2.5-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from pyobjcryst-2.2.5/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/354309/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/354309/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/354309 and its subdirectories I: Current time: Tue Jun 4 19:48:46 +14 2024 I: pbuilder-time-stamp: 1717480126