I: pbuilder: network access will be disabled during build I: Current time: Tue May 2 22:54:48 -12 2023 I: pbuilder-time-stamp: 1683111288 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [plastimatch_1.9.4+dfsg.1-1.dsc] I: copying [./plastimatch_1.9.4+dfsg.1.orig-debian-tests-data.tar.xz] I: copying [./plastimatch_1.9.4+dfsg.1.orig.tar.xz] I: copying [./plastimatch_1.9.4+dfsg.1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Nov 22 07:43:04 2022 -12 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@emlwks999.eu" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./plastimatch_1.9.4+dfsg.1-1.dsc: no acceptable signature found dpkg-source: info: extracting plastimatch in plastimatch-1.9.4+dfsg.1 dpkg-source: info: unpacking plastimatch_1.9.4+dfsg.1.orig.tar.xz dpkg-source: info: unpacking plastimatch_1.9.4+dfsg.1.orig-debian-tests-data.tar.xz dpkg-source: info: unpacking plastimatch_1.9.4+dfsg.1-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3373719/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='07b2862086234c749369974c5a949edc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3373719' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vq3gAO5J/pbuilderrc_6lLk --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vq3gAO5J/b1 --logfile b1/build.log plastimatch_1.9.4+dfsg.1-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 04:31 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 04:31 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/3373719/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libblas-dev, libcharls-dev, libdcmtk-dev, libdlib-dev, libfftw3-dev, libgdcm-dev, libinsighttoolkit5-dev, liblapack-dev, libpng-dev, libsqlite3-dev, libtiff-dev, uuid-dev, zlib1g-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev; however: Package libblas-dev is not installed. pbuilder-satisfydepends-dummy depends on libcharls-dev; however: Package libcharls-dev is not installed. pbuilder-satisfydepends-dummy depends on libdcmtk-dev; however: Package libdcmtk-dev is not installed. pbuilder-satisfydepends-dummy depends on libdlib-dev; however: Package libdlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgdcm-dev; however: Package libgdcm-dev is not installed. pbuilder-satisfydepends-dummy depends on libinsighttoolkit5-dev; however: Package libinsighttoolkit5-dev is not installed. pbuilder-satisfydepends-dummy depends on liblapack-dev; however: Package liblapack-dev is not installed. pbuilder-satisfydepends-dummy depends on libpng-dev; however: Package libpng-dev is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. pbuilder-satisfydepends-dummy depends on libtiff-dev; however: Package libtiff-dev is not installed. pbuilder-satisfydepends-dummy depends on uuid-dev; however: Package uuid-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libcharls-dev{a} libcharls2{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-openssl-dev{a} libdcmtk-dev{a} libdcmtk17{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdlib-data{a} libdlib-dev{a} libdlib19.1{a} libdouble-conversion-dev{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-quad3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libgdcm-dev{a} libgdcm3.0{a} libgfortran5{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libhwloc15{a} libicu-dev{a} libicu72{a} libinsighttoolkit5-dev{a} libinsighttoolkit5.2{a} libjbig-dev{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjson-c5{a} libjsoncpp25{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc-dev{a} liblerc4{a} libllvm15{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libminc-dev{a} libminc2-5.3.0{a} libnetcdf-dev{a} libnetcdf19{a} libnghttp2-14{a} libnifti-dev{a} libnifti2-2{a} libnifti2-dev{a} libnifticdf-dev{a} libnifticdf2{a} libniftiio-dev{a} libniftiio2{a} libopencv-core-dev{a} libopencv-core406{a} libopenjp2-7{a} libpciaccess0{a} libpipeline1{a} libpng-dev{a} libpng16-16{a} libproc2-0{a} libpsl5{a} libpthread-stubs0-dev{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsocket++1{a} libsqlite3-dev{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libsz2{a} libtbb-dev{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtiff-dev{a} libtiff6{a} libtiffxx6{a} libtool{a} libuchardet0{a} libuv1{a} libwebp-dev{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libwrap0{a} libwrap0-dev{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxml2{a} libxml2-dev{a} libxshmfence1{a} libxxf86vm1{a} libz3-4{a} libznz-dev{a} libznz3{a} libzstd-dev{a} m4{a} man-db{a} po-debconf{a} procps{a} pybind11-dev{a} sensible-utils{a} uuid-dev{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libeigen3-dev libhwloc-plugins libldap-common libltdl-dev libmail-sendmail-perl libpng-tools libsasl2-modules lynx pkg-config pkgconf psmisc publicsuffix wget 0 packages upgraded, 183 newly installed, 0 to remove and 0 not upgraded. Need to get 205 MB of archives. After unpacking 732 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libarchive13 amd64 3.6.2-1 [343 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-9 [386 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 librhash0 amd64 1.4.3-3 [134 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libuv1 amd64 1.44.2-1 [140 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 cmake-data all 3.25.1-1 [2026 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 cmake amd64 3.25.1-1 [8692 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 hdf5-helpers amd64 1.10.8+repack1-1 [27.9 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 icu-devtools amd64 72.1-3 [206 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libaec0 amd64 1.0.6-1+b1 [21.1 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libsz2 amd64 1.0.6-1+b1 [7804 B] Get: 53 http://deb.debian.org/debian bookworm/main amd64 libaec-dev amd64 1.0.6-1+b1 [19.9 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libblas-dev amd64 3.11.0-2 [158 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libcharls2 amd64 2.4.1-1 [86.1 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libcharls-dev amd64 2.4.1-1 [29.2 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.88.1-9 [381 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libcurl4-openssl-dev amd64 7.88.1-9 [487 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.1 [285 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-5 [316 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 libwrap0 amd64 7.6.q-32 [54.9 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 libdcmtk17 amd64 3.6.7-8+b1 [5062 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 libpng-dev amd64 1.6.39-2 [359 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 libssl-dev amd64 3.0.8-1 [2427 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 libjbig-dev amd64 2.1-6.1 [31.0 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-2 [290 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 libjpeg-dev amd64 1:2.1.5-2 [71.8 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 liblzma-dev amd64 5.4.1-0.2 [260 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libzstd-dev amd64 1.5.4+dfsg2-5 [354 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.1 [109 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.1 [99.2 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libwebp-dev amd64 1.2.4-0.1 [400 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libtiffxx6 amd64 4.5.0-5 [144 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libdeflate-dev amd64 1.14-1 [53.3 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 liblerc-dev amd64 4.0.0+ds-2 [175 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 libtiff-dev amd64 4.5.0-5 [456 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 libwrap0-dev amd64 7.6.q-32 [21.6 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 libicu-dev amd64 72.1-3 [10.3 MB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 libxml2-dev amd64 2.9.14+dfsg-1.2 [781 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 libdcmtk-dev amd64 3.6.7-8+b1 [1013 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 libdlib-data all 19.24+dfsg-1 [63.4 MB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 libdlib19.1 amd64 19.24+dfsg-1 [3733 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 libglvnd0 amd64 1.6.0-1 [51.8 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 96 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2 [292 kB] Get: 98 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2 [759 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 libdrm-common all 2.4.114-1 [7112 B] Get: 100 http://deb.debian.org/debian bookworm/main amd64 libdrm2 amd64 2.4.114-1+b1 [37.5 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 libglapi-mesa amd64 22.3.6-1+deb12u1 [35.7 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 libx11-xcb1 amd64 2:1.8.4-2 [192 kB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri2-0 amd64 1.15-1 [107 kB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri3-0 amd64 1.15-1 [107 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 libxcb-glx0 amd64 1.15-1 [122 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 libxcb-present0 amd64 1.15-1 [105 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 libxcb-randr0 amd64 1.15-1 [117 kB] Get: 108 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get: 109 http://deb.debian.org/debian bookworm/main amd64 libxcb-sync1 amd64 1.15-1 [109 kB] Get: 110 http://deb.debian.org/debian bookworm/main amd64 libxcb-xfixes0 amd64 1.15-1 [109 kB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 112 http://deb.debian.org/debian bookworm/main amd64 libxfixes3 amd64 1:6.0.0-2 [22.7 kB] Get: 113 http://deb.debian.org/debian bookworm/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get: 114 http://deb.debian.org/debian bookworm/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get: 115 http://deb.debian.org/debian bookworm/main amd64 libdrm-amdgpu1 amd64 2.4.114-1+b1 [20.9 kB] Get: 116 http://deb.debian.org/debian bookworm/main amd64 libpciaccess0 amd64 0.17-2 [51.4 kB] Get: 117 http://deb.debian.org/debian bookworm/main amd64 libdrm-intel1 amd64 2.4.114-1+b1 [64.0 kB] Get: 118 http://deb.debian.org/debian bookworm/main amd64 libdrm-nouveau2 amd64 2.4.114-1+b1 [19.1 kB] Get: 119 http://deb.debian.org/debian bookworm/main amd64 libdrm-radeon1 amd64 2.4.114-1+b1 [21.8 kB] Get: 120 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get: 121 http://deb.debian.org/debian bookworm/main amd64 libz3-4 amd64 4.8.12-3.1 [7216 kB] Get: 122 http://deb.debian.org/debian bookworm/main amd64 libllvm15 amd64 1:15.0.6-4+b1 [23.1 MB] Get: 123 http://deb.debian.org/debian bookworm/main amd64 libsensors-config all 1:3.6.0-7.1 [14.3 kB] Get: 124 http://deb.debian.org/debian bookworm/main amd64 libsensors5 amd64 1:3.6.0-7.1 [34.2 kB] Get: 125 http://deb.debian.org/debian bookworm/main amd64 libgl1-mesa-dri amd64 22.3.6-1+deb12u1 [7239 kB] Get: 126 http://deb.debian.org/debian bookworm/main amd64 libglx-mesa0 amd64 22.3.6-1+deb12u1 [147 kB] Get: 127 http://deb.debian.org/debian bookworm/main amd64 libglx0 amd64 1.6.0-1 [34.4 kB] Get: 128 http://deb.debian.org/debian bookworm/main amd64 libtbbmalloc2 amd64 2021.8.0-1 [46.1 kB] Get: 129 http://deb.debian.org/debian bookworm/main amd64 libhwloc15 amd64 2.9.0-1 [154 kB] Get: 130 http://deb.debian.org/debian bookworm/main amd64 libtbbbind-2-5 amd64 2021.8.0-1 [13.3 kB] Get: 131 http://deb.debian.org/debian bookworm/main amd64 libtbb12 amd64 2021.8.0-1 [79.0 kB] Get: 132 http://deb.debian.org/debian bookworm/main amd64 libopencv-core406 amd64 4.6.0+dfsg-11 [1087 kB] Get: 133 http://deb.debian.org/debian bookworm/main amd64 libtbb-dev amd64 2021.8.0-1 [191 kB] Get: 134 http://deb.debian.org/debian bookworm/main amd64 libopencv-core-dev amd64 4.6.0+dfsg-11 [1840 kB] Get: 135 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-dev amd64 3.40.1-2 [1025 kB] Get: 136 http://deb.debian.org/debian bookworm/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 137 http://deb.debian.org/debian bookworm/main amd64 x11proto-dev all 2022.1-1 [599 kB] Get: 138 http://deb.debian.org/debian bookworm/main amd64 libxau-dev amd64 1:1.0.9-1 [22.9 kB] Get: 139 http://deb.debian.org/debian bookworm/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get: 140 http://deb.debian.org/debian bookworm/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 141 http://deb.debian.org/debian bookworm/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5344 B] Get: 142 http://deb.debian.org/debian bookworm/main amd64 libxcb1-dev amd64 1.15-1 [181 kB] Get: 143 http://deb.debian.org/debian bookworm/main amd64 libx11-dev amd64 2:1.8.4-2 [836 kB] Get: 144 http://deb.debian.org/debian bookworm/main amd64 pybind11-dev all 2.10.3-1 [186 kB] Get: 145 http://deb.debian.org/debian bookworm/main amd64 libdlib-dev amd64 19.24+dfsg-1 [2031 kB] Get: 146 http://deb.debian.org/debian bookworm/main amd64 libdouble-conversion3 amd64 3.2.1-1 [41.5 kB] Get: 147 http://deb.debian.org/debian bookworm/main amd64 libdouble-conversion-dev amd64 3.2.1-1 [61.5 kB] Get: 148 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get: 149 http://deb.debian.org/debian bookworm/main amd64 libfftw3-double3 amd64 3.3.10-1 [776 kB] Get: 150 http://deb.debian.org/debian bookworm/main amd64 libfftw3-long3 amd64 3.3.10-1 [337 kB] Get: 151 http://deb.debian.org/debian bookworm/main amd64 libfftw3-quad3 amd64 3.3.10-1 [603 kB] Get: 152 http://deb.debian.org/debian bookworm/main amd64 libfftw3-single3 amd64 3.3.10-1 [806 kB] Get: 153 http://deb.debian.org/debian bookworm/main amd64 libfftw3-bin amd64 3.3.10-1 [51.7 kB] Get: 154 http://deb.debian.org/debian bookworm/main amd64 libfftw3-dev amd64 3.3.10-1 [2123 kB] Get: 155 http://deb.debian.org/debian bookworm/main amd64 libjson-c5 amd64 0.16-2 [44.1 kB] Get: 156 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-1+b1 [189 kB] Get: 157 http://deb.debian.org/debian bookworm/main amd64 libsocket++1 amd64 1.12.13+git20131030.5d039ba-1+b1 [78.3 kB] Get: 158 http://deb.debian.org/debian bookworm/main amd64 libgdcm3.0 amd64 3.0.21-1 [2253 kB] Get: 159 http://deb.debian.org/debian bookworm/main amd64 libgdcm-dev amd64 3.0.21-1 [264 kB] Get: 160 http://deb.debian.org/debian bookworm/main amd64 libhdf5-103-1 amd64 1.10.8+repack1-1 [1237 kB] Get: 161 http://deb.debian.org/debian bookworm/main amd64 libhdf5-cpp-103-1 amd64 1.10.8+repack1-1 [128 kB] Get: 162 http://deb.debian.org/debian bookworm/main amd64 libhdf5-fortran-102 amd64 1.10.8+repack1-1 [93.3 kB] Get: 163 http://deb.debian.org/debian bookworm/main amd64 libhdf5-hl-100 amd64 1.10.8+repack1-1 [67.8 kB] Get: 164 http://deb.debian.org/debian bookworm/main amd64 libhdf5-hl-fortran-100 amd64 1.10.8+repack1-1 [44.5 kB] Get: 165 http://deb.debian.org/debian bookworm/main amd64 libhdf5-hl-cpp-100 amd64 1.10.8+repack1-1 [25.5 kB] Get: 166 http://deb.debian.org/debian bookworm/main amd64 libhdf5-dev amd64 1.10.8+repack1-1 [2615 kB] Get: 167 http://deb.debian.org/debian bookworm/main amd64 libnetcdf19 amd64 1:4.9.0-3+b1 [476 kB] Get: 168 http://deb.debian.org/debian bookworm/main amd64 libminc2-5.3.0 amd64 2.4.05-4 [236 kB] Get: 169 http://deb.debian.org/debian bookworm/main amd64 libinsighttoolkit5.2 amd64 5.2.1-5+b3 [5605 kB] Get: 170 http://deb.debian.org/debian bookworm/main amd64 libznz3 amd64 3.0.1-9 [14.0 kB] Get: 171 http://deb.debian.org/debian bookworm/main amd64 libnifti2-2 amd64 3.0.1-9 [79.2 kB] Get: 172 http://deb.debian.org/debian bookworm/main amd64 libnifticdf2 amd64 3.0.1-9 [57.1 kB] Get: 173 http://deb.debian.org/debian bookworm/main amd64 libnifticdf-dev amd64 3.0.1-9 [62.9 kB] Get: 174 http://deb.debian.org/debian bookworm/main amd64 libniftiio2 amd64 3.0.1-9 [62.0 kB] Get: 175 http://deb.debian.org/debian bookworm/main amd64 libniftiio-dev amd64 3.0.1-9 [71.2 kB] Get: 176 http://deb.debian.org/debian bookworm/main amd64 libznz-dev amd64 3.0.1-9 [14.3 kB] Get: 177 http://deb.debian.org/debian bookworm/main amd64 libnifti2-dev amd64 3.0.1-9 [98.6 kB] Get: 178 http://deb.debian.org/debian bookworm/main amd64 libnifti-dev all 3.0.1-9 [12.9 kB] Get: 179 http://deb.debian.org/debian bookworm/main amd64 libnetcdf-dev amd64 1:4.9.0-3+b1 [113 kB] Get: 180 http://deb.debian.org/debian bookworm/main amd64 libminc-dev amd64 2.4.05-4 [74.2 kB] Get: 181 http://deb.debian.org/debian bookworm/main amd64 libinsighttoolkit5-dev amd64 5.2.1-5+b3 [3093 kB] Get: 182 http://deb.debian.org/debian bookworm/main amd64 liblapack-dev amd64 3.11.0-2 [4631 kB] Get: 183 http://deb.debian.org/debian bookworm/main amd64 uuid-dev amd64 2.38.1-5+b1 [39.9 kB] Fetched 205 MB in 7s (31.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../000-libproc2-0_2%3a4.0.2-3_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../001-procps_2%3a4.0.2-3_amd64.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../003-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../004-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../005-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../006-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../007-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../008-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../009-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../010-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../011-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../012-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../013-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../014-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../015-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../016-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../017-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../018-libxml2_2.9.14+dfsg-1.2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../019-libarchive13_3.6.2-1_amd64.deb ... Unpacking libarchive13:amd64 (3.6.2-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../020-libbrotli1_1.0.9-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../021-libsasl2-modules-db_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../022-libsasl2-2_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../023-libldap-2.5-0_2.5.13+dfsg-5_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../024-libnghttp2-14_1.52.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.52.0-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../025-libpsl5_0.21.2-1_amd64.deb ... Unpacking libpsl5:amd64 (0.21.2-1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../026-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../027-libssh2-1_1.10.0-3+b1_amd64.deb ... Unpacking libssh2-1:amd64 (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../028-libcurl4_7.88.1-9_amd64.deb ... Unpacking libcurl4:amd64 (7.88.1-9) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../029-libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package libjsoncpp25:amd64. Preparing to unpack .../030-libjsoncpp25_1.9.5-4_amd64.deb ... Unpacking libjsoncpp25:amd64 (1.9.5-4) ... Selecting previously unselected package librhash0:amd64. Preparing to unpack .../031-librhash0_1.4.3-3_amd64.deb ... Unpacking librhash0:amd64 (1.4.3-3) ... Selecting previously unselected package libuv1:amd64. Preparing to unpack .../032-libuv1_1.44.2-1_amd64.deb ... 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Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libxfixes3:amd64 (1:6.0.0-2) ... Setting up libcurl4-openssl-dev:amd64 (7.88.1-9) ... Setting up libhdf5-103-1:amd64 (1.10.8+repack1-1) ... Setting up libhdf5-cpp-103-1:amd64 (1.10.8+repack1-1) ... Setting up cmake (3.25.1-1) ... Setting up libnifti2-dev (3.0.1-9) ... Setting up libtbb-dev:amd64 (2021.8.0-1) ... Setting up libnifti-dev (3.0.1-9) ... Setting up libhdf5-hl-100:amd64 (1.10.8+repack1-1) ... Setting up libglx-mesa0:amd64 (22.3.6-1+deb12u1) ... Setting up libglx0:amd64 (1.6.0-1) ... Setting up debhelper (13.11.4) ... Setting up libhdf5-hl-cpp-100:amd64 (1.10.8+repack1-1) ... Setting up libhdf5-fortran-102:amd64 (1.10.8+repack1-1) ... Setting up libnetcdf19:amd64 (1:4.9.0-3+b1) ... Setting up libhdf5-hl-fortran-100:amd64 (1.10.8+repack1-1) ... Setting up libopencv-core406:amd64 (4.6.0+dfsg-11) ... Setting up libminc2-5.3.0:amd64 (2.4.05-4) ... Setting up libhdf5-dev (1.10.8+repack1-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnetcdf-dev (1:4.9.0-3+b1) ... Setting up libopencv-core-dev:amd64 (4.6.0+dfsg-11) ... Setting up libminc-dev:amd64 (2.4.05-4) ... Setting up libinsighttoolkit5.2 (5.2.1-5+b3) ... Setting up libinsighttoolkit5-dev (5.2.1-5+b3) ... Setting up libdlib-dev:amd64 (19.24+dfsg-1) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/plastimatch-1.9.4+dfsg.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../plastimatch_1.9.4+dfsg.1-1_source.changes dpkg-buildpackage: info: source package plastimatch dpkg-buildpackage: info: source version 1.9.4+dfsg.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Gregory C. Sharp dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/plastimatch-1.9.4+dfsg.1' dh_auto_configure -- -DCMAKE_BUILD_TYPE:STRING=RELEASE -DCMAKE_SKIP_RPATH:BOOL=ON -DPLM_CONFIG_DEBIAN_BUILD:BOOL=ON -DBUILD_SHARED_LIBS=ON -DBUILD_TESTING:BOOL=ON cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE:STRING=RELEASE -DCMAKE_SKIP_RPATH:BOOL=ON -DPLM_CONFIG_DEBIAN_BUILD:BOOL=ON -DBUILD_SHARED_LIBS=ON -DBUILD_TESTING:BOOL=ON .. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Trying to find DCMTK expecting DCMTKConfig.cmake -- Trying to find DCMTK expecting DCMTKConfig.cmake - ok -- DCMTK version 3.6.7 found (1). -- Etags targets added. -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Could NOT find libLBFGS (missing: libLBFGS_LIBRARY libLBFGS_INCLUDE_DIR) -- Could NOT find nlopt (missing: nlopt_LIBRARY nlopt_INCLUDE_DIR) -- Looking for CL_VERSION_3_0 -- Looking for CL_VERSION_3_0 - not found -- Looking for CL_VERSION_2_2 -- Looking for CL_VERSION_2_2 - not found -- Looking for CL_VERSION_2_1 -- Looking for CL_VERSION_2_1 - not found -- Looking for CL_VERSION_2_0 -- Looking for CL_VERSION_2_0 - not found -- Looking for CL_VERSION_1_2 -- Looking for CL_VERSION_1_2 - not found -- Looking for CL_VERSION_1_1 -- Looking for CL_VERSION_1_1 - not found -- Looking for CL_VERSION_1_0 -- Looking for CL_VERSION_1_0 - not found -- Could NOT find OpenCL (missing: OpenCL_LIBRARY OpenCL_INCLUDE_DIR) -- Check for compiler OpenMP support... -- OpenMP flags "-fopenmp", OpenMP libraries "" -- SSE2_FLAGS "-msse2 -mfpmath=sse" -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) -- CUDA Not found -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Looking for wxWidgets - not found. -- Looking for Matlab - not found. -- Looking for Octave - not found. -- Plastimatch version is 1.9.4 -- The imported target "gdcmdump" references the file "/usr/bin/gdcmdump" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmdiff" references the file "/usr/bin/gdcmdiff" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmraw" references the file "/usr/bin/gdcmraw" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmscanner" references the file "/usr/bin/gdcmscanner" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmanon" references the file "/usr/bin/gdcmanon" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmclean" references the file "/usr/bin/gdcmclean" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmgendir" references the file "/usr/bin/gdcmgendir" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmimg" references the file "/usr/bin/gdcmimg" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmconv" references the file "/usr/bin/gdcmconv" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmtar" references the file "/usr/bin/gdcmtar" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcminfo" references the file "/usr/bin/gdcminfo" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmscu" references the file "/usr/bin/gdcmscu" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmxml" references the file "/usr/bin/gdcmxml" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmpap3" references the file "/usr/bin/gdcmpap3" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmpdf" references the file "/usr/bin/gdcmpdf" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.8") found components: CXX C -- ITK_VERSION = 5.2.1 found -- Looking for C++ include itkVectorCentralDifferenceImageFunction.h -- Looking for C++ include itkVectorCentralDifferenceImageFunction.h - not found -- Looking for C++ include itkVectorCentralDifferenceImageFunction.h -- Looking for C++ include itkVectorCentralDifferenceImageFunction.h - not found -- ITK_BASE = /usr -- Looking for Qt4 - not found -- Looking for Qt5 - not found -- Could NOT find yaml (missing: yaml_LIBRARIES yaml_INCLUDE_DIR) -- Machine is 64-bit -- Checking host processor: x86_64 -- Checking target processor: x86_64 -- Checking epsilon: 2.22045E-16 2.22045E-16 2.22045E-16 -- Checking sign of char: char is signed -- Trying to find DCMTK expecting DCMTKConfig.cmake -- Trying to find DCMTK expecting DCMTKConfig.cmake - ok -- Appending /build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -- Not appending /build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.2 -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1' dh_auto_build cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/plastimatch-1.9.4+dfsg.1 -B/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/CMakeFiles /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9 /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/DependInfo.cmake --color= make -f libs/devillard/CMakeFiles/devillard.dir/build.make libs/devillard/CMakeFiles/devillard.dir/depend make -f libs/inih-r29/CMakeFiles/inih.dir/build.make libs/inih-r29/CMakeFiles/inih.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/libs/devillard /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/devillard /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/devillard/CMakeFiles/devillard.dir/DependInfo.cmake --color= make -f libs/specfun/CMakeFiles/specfun.dir/build.make libs/specfun/CMakeFiles/specfun.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 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/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress/CMakeFiles/nkidecompress.dir/DependInfo.cmake --color= make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys/CMakeFiles/plmsys.dir/DependInfo.cmake --color= make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/depend make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp/CMakeFiles/plmclp.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f libs/inih-r29/CMakeFiles/inih.dir/build.make 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libs/nkidecompress/CMakeFiles/nkidecompress.dir/build make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/build [ 0%] Building C object libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/lib/lbfgs.c.o make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cc -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/lib/lbfgs.c.o -MF CMakeFiles/lbfgs.dir/lib/lbfgs.c.o.d -o CMakeFiles/lbfgs.dir/lib/lbfgs.c.o -c /build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/lib/lbfgs.c make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/build [ 1%] Building C object libs/inih-r29/CMakeFiles/inih.dir/ini.c.o make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT libs/inih-r29/CMakeFiles/inih.dir/ini.c.o -MF CMakeFiles/inih.dir/ini.c.o.d -o CMakeFiles/inih.dir/ini.c.o -c /build/plastimatch-1.9.4+dfsg.1/libs/inih-r29/ini.c [ 1%] Building CXX object libs/inih-r29/CMakeFiles/inih.dir/INIReader.cpp.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT libs/inih-r29/CMakeFiles/inih.dir/INIReader.cpp.o -MF CMakeFiles/inih.dir/INIReader.cpp.o.d -o CMakeFiles/inih.dir/INIReader.cpp.o -c /build/plastimatch-1.9.4+dfsg.1/libs/inih-r29/INIReader.cpp [ 1%] Building CXX object libs/devillard/CMakeFiles/devillard.dir/wirth.cpp.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/devillard && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT libs/devillard/CMakeFiles/devillard.dir/wirth.cpp.o -MF CMakeFiles/devillard.dir/wirth.cpp.o.d -o CMakeFiles/devillard.dir/wirth.cpp.o -c /build/plastimatch-1.9.4+dfsg.1/libs/devillard/wirth.cpp [ 1%] Building C object libs/specfun/CMakeFiles/specfun.dir/mpbdv.c.o [ 1%] Building CXX object libs/nkidecompress/CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun && /usr/bin/cc -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT libs/specfun/CMakeFiles/specfun.dir/mpbdv.c.o -MF CMakeFiles/specfun.dir/mpbdv.c.o.d -o CMakeFiles/specfun.dir/mpbdv.c.o -c /build/plastimatch-1.9.4+dfsg.1/libs/specfun/mpbdv.c [ 1%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/dlib_threads.cxx.o [ 1%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/dir_list.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT libs/nkidecompress/CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o -MF CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o.d -o CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress/nkidecompress.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/dlib_threads.cxx.o -MF CMakeFiles/plmsys.dir/dlib_threads.cxx.o.d -o CMakeFiles/plmsys.dir/dlib_threads.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/dlib_threads.cxx [ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/file_util.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/dir_list.cxx.o -MF CMakeFiles/plmsys.dir/dir_list.cxx.o.d -o CMakeFiles/plmsys.dir/dir_list.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/dir_list.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/file_util.cxx.o -MF CMakeFiles/plmsys.dir/file_util.cxx.o.d -o CMakeFiles/plmsys.dir/file_util.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/file_util.cxx [ 2%] Building CXX object src/plastimatch/clp/CMakeFiles/plmclp.dir/plm_clp.cxx.o [ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/option_range.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT src/plastimatch/clp/CMakeFiles/plmclp.dir/plm_clp.cxx.o -MF CMakeFiles/plmclp.dir/plm_clp.cxx.o.d -o CMakeFiles/plmclp.dir/plm_clp.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp/plm_clp.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/option_range.cxx.o -MF CMakeFiles/plmsys.dir/option_range.cxx.o.d -o CMakeFiles/plmsys.dir/option_range.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/option_range.cxx [ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/logfile.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/logfile.cxx.o -MF CMakeFiles/plmsys.dir/logfile.cxx.o.d -o CMakeFiles/plmsys.dir/logfile.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/logfile.cxx [ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/path_util.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ 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-I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/path_util.cxx.o -MF CMakeFiles/plmsys.dir/path_util.cxx.o.d -o CMakeFiles/plmsys.dir/path_util.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/path_util.cxx [ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_endian.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_endian.cxx.o -MF CMakeFiles/plmsys.dir/plm_endian.cxx.o.d -o CMakeFiles/plmsys.dir/plm_endian.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/plm_endian.cxx [ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_fwrite.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_fwrite.cxx.o -MF CMakeFiles/plmsys.dir/plm_fwrite.cxx.o.d -o CMakeFiles/plmsys.dir/plm_fwrite.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/plm_fwrite.cxx [ 3%] Linking CXX static library ../../libdevillard.a cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/devillard && /usr/bin/cmake -P CMakeFiles/devillard.dir/cmake_clean_target.cmake cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/devillard && /usr/bin/cmake -E cmake_link_script CMakeFiles/devillard.dir/link.txt --verbose=1 /usr/bin/ar qc ../../libdevillard.a CMakeFiles/devillard.dir/wirth.cpp.o /usr/bin/ranlib ../../libdevillard.a make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 3%] Built target devillard [ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_sleep.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_sleep.cxx.o -MF CMakeFiles/plmsys.dir/plm_sleep.cxx.o.d -o CMakeFiles/plmsys.dir/plm_sleep.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/plm_sleep.cxx [ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_timer.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_timer.cxx.o -MF CMakeFiles/plmsys.dir/plm_timer.cxx.o.d -o CMakeFiles/plmsys.dir/plm_timer.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/plm_timer.cxx [ 4%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/print_and_exit.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/print_and_exit.cxx.o -MF CMakeFiles/plmsys.dir/print_and_exit.cxx.o.d -o CMakeFiles/plmsys.dir/print_and_exit.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/print_and_exit.cxx [ 4%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/string_util.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/string_util.cxx.o -MF CMakeFiles/plmsys.dir/string_util.cxx.o.d -o CMakeFiles/plmsys.dir/string_util.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/string_util.cxx [ 4%] Linking CXX static library ../../libnkidecompress.a cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress && /usr/bin/cmake -P CMakeFiles/nkidecompress.dir/cmake_clean_target.cmake [ 4%] Building C object src/plastimatch/sys/CMakeFiles/plmsys.dir/delayload_legacy.c.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/cc -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.2 -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/delayload_legacy.c.o -MF CMakeFiles/plmsys.dir/delayload_legacy.c.o.d -o CMakeFiles/plmsys.dir/delayload_legacy.c.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/delayload_legacy.c cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress && /usr/bin/cmake -E cmake_link_script CMakeFiles/nkidecompress.dir/link.txt --verbose=1 /usr/bin/ar qc ../../libnkidecompress.a CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o /usr/bin/ranlib ../../libnkidecompress.a make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 4%] Built target nkidecompress [ 4%] Linking C static library ../../libspecfun.a cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun && /usr/bin/cmake -P CMakeFiles/specfun.dir/cmake_clean_target.cmake cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun && /usr/bin/cmake -E cmake_link_script CMakeFiles/specfun.dir/link.txt --verbose=1 /usr/bin/ar qc ../../libspecfun.a CMakeFiles/specfun.dir/mpbdv.c.o /usr/bin/ranlib ../../libspecfun.a make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 4%] Built target specfun [ 4%] Linking C static library ../../liblbfgs.a cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cmake -P CMakeFiles/lbfgs.dir/cmake_clean_target.cmake cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cmake -E cmake_link_script CMakeFiles/lbfgs.dir/link.txt --verbose=1 /usr/bin/ar qc ../../liblbfgs.a CMakeFiles/lbfgs.dir/lib/lbfgs.c.o /usr/bin/ranlib ../../liblbfgs.a make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 4%] Built target lbfgs [ 4%] Linking CXX static library ../../libinih.a cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/cmake -P CMakeFiles/inih.dir/cmake_clean_target.cmake cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/cmake -E cmake_link_script CMakeFiles/inih.dir/link.txt --verbose=1 /usr/bin/ar qc ../../libinih.a CMakeFiles/inih.dir/ini.c.o CMakeFiles/inih.dir/INIReader.cpp.o /usr/bin/ranlib ../../libinih.a make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 4%] Built target inih [ 4%] Linking CXX shared library ../../../libplmsys.so cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmsys.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libplmsys.so.1.9 -o ../../../libplmsys.so.1.9 CMakeFiles/plmsys.dir/dir_list.cxx.o CMakeFiles/plmsys.dir/dlib_threads.cxx.o CMakeFiles/plmsys.dir/file_util.cxx.o CMakeFiles/plmsys.dir/logfile.cxx.o CMakeFiles/plmsys.dir/option_range.cxx.o CMakeFiles/plmsys.dir/path_util.cxx.o CMakeFiles/plmsys.dir/plm_endian.cxx.o CMakeFiles/plmsys.dir/plm_fwrite.cxx.o CMakeFiles/plmsys.dir/plm_sleep.cxx.o CMakeFiles/plmsys.dir/plm_timer.cxx.o CMakeFiles/plmsys.dir/print_and_exit.cxx.o CMakeFiles/plmsys.dir/string_util.cxx.o CMakeFiles/plmsys.dir/delayload_legacy.c.o -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -ldl -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lpthread -lpng -lz -ljpeg -lblas -llapack -lsqlite3 cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/cmake -E cmake_symlink_library ../../../libplmsys.so.1.9 ../../../libplmsys.so.1.9 ../../../libplmsys.so make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 4%] Built target plmsys make -f src/plastimatch/base/CMakeFiles/plmbase.dir/build.make src/plastimatch/base/CMakeFiles/plmbase.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base/CMakeFiles/plmbase.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/base/CMakeFiles/plmbase.dir/build.make src/plastimatch/base/CMakeFiles/plmbase.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 4%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/aperture.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/aperture.cxx.o -MF CMakeFiles/plmbase.dir/aperture.cxx.o.d -o CMakeFiles/plmbase.dir/aperture.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/aperture.cxx [ 5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/astroid_dose.cxx.o [ 5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/beam_geometry.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/astroid_dose.cxx.o -MF CMakeFiles/plmbase.dir/astroid_dose.cxx.o.d -o CMakeFiles/plmbase.dir/astroid_dose.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/astroid_dose.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/beam_geometry.cxx.o -MF CMakeFiles/plmbase.dir/beam_geometry.cxx.o.d -o CMakeFiles/plmbase.dir/beam_geometry.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/beam_geometry.cxx [ 5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_header.cxx.o [ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o [ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_warp.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_header.cxx.o -MF CMakeFiles/plmbase.dir/bspline_header.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_header.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/bspline_header.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o -MF CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/bspline_interpolate.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -msse2 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_warp.cxx.o -MF CMakeFiles/plmbase.dir/bspline_warp.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_warp.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/bspline_warp.cxx [ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform.cxx.o -MF CMakeFiles/plmbase.dir/bspline_xform.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_xform.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/bspline_xform.cxx [ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_extract.cxx.o [ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_io.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_extract.cxx.o -MF CMakeFiles/plmbase.dir/cxt_extract.cxx.o.d -o CMakeFiles/plmbase.dir/cxt_extract.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/cxt_extract.cxx [ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_probe.cxx.o [ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_io.cxx.o -MF CMakeFiles/plmbase.dir/cxt_io.cxx.o.d -o CMakeFiles/plmbase.dir/cxt_io.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/cxt_io.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o -MF CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/bspline_xform_legacy.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_probe.cxx.o -MF CMakeFiles/plmbase.dir/dicom_probe.cxx.o.d -o CMakeFiles/plmbase.dir/dicom_probe.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dicom_probe.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/direction_cosines.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/direction_cosines.cxx.o -MF CMakeFiles/plmbase.dir/direction_cosines.cxx.o.d -o CMakeFiles/plmbase.dir/direction_cosines.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/direction_cosines.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_util.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_util.cxx.o -MF CMakeFiles/plmbase.dir/dicom_util.cxx.o.d -o CMakeFiles/plmbase.dir/dicom_util.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dicom_util.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/direction_matrices.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/direction_matrices.cxx.o -MF CMakeFiles/plmbase.dir/direction_matrices.cxx.o.d -o CMakeFiles/plmbase.dir/direction_matrices.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/direction_matrices.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/exchkeys.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/exchkeys.cxx.o -MF CMakeFiles/plmbase.dir/exchkeys.cxx.o.d -o CMakeFiles/plmbase.dir/exchkeys.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/exchkeys.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/float_pair_list.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/float_pair_list.cxx.o -MF CMakeFiles/plmbase.dir/float_pair_list.cxx.o.d -o CMakeFiles/plmbase.dir/float_pair_list.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/float_pair_list.cxx [ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/gaussian.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/gaussian.cxx.o -MF CMakeFiles/plmbase.dir/gaussian.cxx.o.d -o CMakeFiles/plmbase.dir/gaussian.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/gaussian.cxx [ 9%] Linking CXX static library libplmclp.a cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp && /usr/bin/cmake -P CMakeFiles/plmclp.dir/cmake_clean_target.cmake cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmclp.dir/link.txt --verbose=1 /usr/bin/ar qc libplmclp.a CMakeFiles/plmclp.dir/plm_clp.cxx.o /usr/bin/ranlib libplmclp.a make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 9%] Built target plmclp [ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/hnd_io.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/hnd_io.cxx.o -MF CMakeFiles/plmbase.dir/hnd_io.cxx.o.d -o CMakeFiles/plmbase.dir/hnd_io.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/hnd_io.cxx [ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/image_stats.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/image_stats.cxx.o -MF CMakeFiles/plmbase.dir/image_stats.cxx.o.d -o CMakeFiles/plmbase.dir/image_stats.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/image_stats.cxx [ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/interpolate.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/interpolate.cxx.o -MF CMakeFiles/plmbase.dir/interpolate.cxx.o.d -o CMakeFiles/plmbase.dir/interpolate.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/interpolate.cxx [ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_bbox.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_bbox.cxx.o -MF CMakeFiles/plmbase.dir/itk_bbox.cxx.o.d -o CMakeFiles/plmbase.dir/itk_bbox.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_bbox.cxx [ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_directions.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_directions.cxx.o -MF CMakeFiles/plmbase.dir/itk_directions.cxx.o.d -o CMakeFiles/plmbase.dir/itk_directions.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_directions.cxx [ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image.cxx.o -MF CMakeFiles/plmbase.dir/itk_image.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image.cxx [ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_accumulate.cxx [ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_cast.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_cast.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_cast.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_cast.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_cast.cxx [ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_clone.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_clone.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_clone.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_clone.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_clone.cxx [ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_create.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_create.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_create.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_create.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_create.cxx [ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_header_compare.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_header_compare.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_header_compare.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_header_compare.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_header_compare.cxx [ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_char.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_char.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_char.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_char.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_char.cxx [ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_double.cxx [ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_float.cxx [ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_int32.cxx [ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_int64.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_int64.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_int64.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_int64.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_int64.cxx [ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_short.cxx [ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uchar.cxx [ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint32.cxx [ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uint64.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uint64.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_uint64.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_uint64.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint64.cxx [ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_ushort.cxx In file included from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_float.cxx:6: /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = float; typename itk::Image::Pointer = itk::SmartPointer >]': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_float.cxx:20:27: required from here /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ | | | int 141 | componentType, fname); | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} In file included from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_char.cxx:6: /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = char; typename itk::Image::Pointer = itk::SmartPointer >]': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_char.cxx:21:27: required from here /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ | | | int 141 | componentType, fname); | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} In file included from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_double.cxx:6: /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = double; typename itk::Image::Pointer = itk::SmartPointer >]': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_double.cxx:20:27: required from here /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ | | | int 141 | componentType, fname); | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} In file included from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_int32.cxx:6: /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = int; typename itk::Image::Pointer = itk::SmartPointer >]': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_int32.cxx:20:27: required from here /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ | | | int 141 | componentType, fname); | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} In file included from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_int64.cxx:6: /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = long int; typename itk::Image::Pointer = itk::SmartPointer >]': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_int64.cxx:20:27: required from here /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ | | | int 141 | componentType, fname); | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} In file included from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uchar.cxx:6: /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = unsigned char; typename itk::Image::Pointer = itk::SmartPointer >]': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uchar.cxx:20:27: required from here /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ | | | int 141 | componentType, fname); | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} In file included from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_short.cxx:6: /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = short int; typename itk::Image::Pointer = itk::SmartPointer >]': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_short.cxx:20:27: required from here /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ | | | int 141 | componentType, fname); | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} In file included from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint64.cxx:6: /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = long unsigned int; typename itk::Image::Pointer = itk::SmartPointer >]': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint64.cxx:20:27: required from here /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ | | | int 141 | componentType, fname); | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} [ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_vec.cxx In file included from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint32.cxx:6: /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = unsigned int; typename itk::Image::Pointer = itk::SmartPointer >]': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint32.cxx:20:27: required from here /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ | | | int 141 | componentType, fname); | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} In file included from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_ushort.cxx:6: /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = short unsigned int; typename itk::Image::Pointer = itk::SmartPointer >]': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_ushort.cxx:20:27: required from here /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ | | | int 141 | componentType, fname); | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} [ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_origin.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_origin.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_origin.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_origin.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_origin.cxx [ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_region.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_region.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_region.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_region.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_region.cxx [ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_save.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_save.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_save.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_save.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_save.cxx [ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_shift_scale.cxx [ 16%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_stats.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_stats.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_stats.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_stats.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_stats.cxx [ 16%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_metadata.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_metadata.cxx.o -MF CMakeFiles/plmbase.dir/itk_metadata.cxx.o.d -o CMakeFiles/plmbase.dir/itk_metadata.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_metadata.cxx [ 16%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_pointset.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_pointset.cxx.o -MF CMakeFiles/plmbase.dir/itk_pointset.cxx.o.d -o CMakeFiles/plmbase.dir/itk_pointset.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_pointset.cxx [ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_resample.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_resample.cxx.o -MF CMakeFiles/plmbase.dir/itk_resample.cxx.o.d -o CMakeFiles/plmbase.dir/itk_resample.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_resample.cxx [ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_volume_header.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_volume_header.cxx.o -MF CMakeFiles/plmbase.dir/itk_volume_header.cxx.o.d -o CMakeFiles/plmbase.dir/itk_volume_header.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_volume_header.cxx [ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_warp.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_warp.cxx.o -MF CMakeFiles/plmbase.dir/itk_warp.cxx.o.d -o CMakeFiles/plmbase.dir/itk_warp.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_warp.cxx [ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/mc_dose.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/mc_dose.cxx.o -MF CMakeFiles/plmbase.dir/mc_dose.cxx.o.d -o CMakeFiles/plmbase.dir/mc_dose.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/mc_dose.cxx [ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/metadata.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/metadata.cxx.o -MF CMakeFiles/plmbase.dir/metadata.cxx.o.d -o CMakeFiles/plmbase.dir/metadata.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/metadata.cxx [ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/mha_io.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/mha_io.cxx.o -MF CMakeFiles/plmbase.dir/mha_io.cxx.o.d -o CMakeFiles/plmbase.dir/mha_io.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/mha_io.cxx [ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/nki_io.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/nki_io.cxx.o -MF CMakeFiles/plmbase.dir/nki_io.cxx.o.d -o CMakeFiles/plmbase.dir/nki_io.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/nki_io.cxx [ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/parameter_parser.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/parameter_parser.cxx.o -MF CMakeFiles/plmbase.dir/parameter_parser.cxx.o.d -o CMakeFiles/plmbase.dir/parameter_parser.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/parameter_parser.cxx [ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_file_format.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_file_format.cxx.o -MF CMakeFiles/plmbase.dir/plm_file_format.cxx.o.d -o CMakeFiles/plmbase.dir/plm_file_format.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_file_format.cxx [ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register 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-I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image.cxx.o -MF CMakeFiles/plmbase.dir/plm_image.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_image.cxx [ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_convert.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_convert.cxx.o -MF CMakeFiles/plmbase.dir/plm_image_convert.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image_convert.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_image_convert.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_file_format.cxx: In function 'Plm_file_format plm_file_format_deduce(const char*)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_file_format.cxx:97:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fgets (line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_header.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_header.cxx.o -MF CMakeFiles/plmbase.dir/plm_image_header.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image_header.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_image_header.cxx [ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_set.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_set.cxx.o -MF CMakeFiles/plmbase.dir/plm_image_set.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image_set.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_image_set.cxx [ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_type.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_type.cxx.o -MF CMakeFiles/plmbase.dir/plm_image_type.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image_type.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_image_type.cxx [ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_warp.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_warp.cxx.o -MF CMakeFiles/plmbase.dir/plm_warp.cxx.o.d -o CMakeFiles/plmbase.dir/plm_warp.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_warp.cxx [ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/pointset.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/pointset.cxx.o -MF CMakeFiles/plmbase.dir/pointset.cxx.o.d -o CMakeFiles/plmbase.dir/pointset.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pointset.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pointset.cxx: In member function 'void Pointset::load_fcsv(const char*) [with T = Labeled_point]': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pointset.cxx:65:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 65 | fgets (s, 1024, fp); | ~~~~~~^~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pointset.cxx: In member function 'void Pointset::load_fcsv(const char*) [with T = Point]': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pointset.cxx:65:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] [ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/pointset_warp.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/pointset_warp.cxx.o -MF CMakeFiles/plmbase.dir/pointset_warp.cxx.o.d -o CMakeFiles/plmbase.dir/pointset_warp.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pointset_warp.cxx [ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image.cxx.o -MF CMakeFiles/plmbase.dir/proj_image.cxx.o.d -o CMakeFiles/plmbase.dir/proj_image.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_image.cxx [ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image_dir.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image_dir.cxx.o -MF CMakeFiles/plmbase.dir/proj_image_dir.cxx.o.d -o CMakeFiles/plmbase.dir/proj_image_dir.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_image_dir.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_image.cxx: In function 'void pfm_load(Proj_image*, const char*)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_image.cxx:175:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 175 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_image.cxx:183:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 183 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_image.cxx:190:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 190 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ [ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_matrix.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/proj_matrix.cxx.o -MF CMakeFiles/plmbase.dir/proj_matrix.cxx.o.d -o CMakeFiles/plmbase.dir/proj_matrix.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_matrix.cxx [ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_volume.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/proj_volume.cxx.o -MF CMakeFiles/plmbase.dir/proj_volume.cxx.o.d -o CMakeFiles/plmbase.dir/proj_volume.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_volume.cxx [ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/pwlut.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/pwlut.cxx.o -MF CMakeFiles/plmbase.dir/pwlut.cxx.o.d -o CMakeFiles/plmbase.dir/pwlut.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pwlut.cxx [ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rasterize_slice.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rasterize_slice.cxx.o -MF CMakeFiles/plmbase.dir/rasterize_slice.cxx.o.d -o CMakeFiles/plmbase.dir/rasterize_slice.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rasterize_slice.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_volume.cxx: In member function 'void Proj_volume::save_header(const char*)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_volume.cxx:299:30: warning: format '%d' expects argument of type 'int', but argument 3 has type 'plm_long' {aka 'long int'} [-Wformat=] 299 | fprintf (fp, "num_steps=%d\n", d_ptr->num_steps); | ~^ ~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_volume.cxx:301:30: warning: format '%d' expects argument of type 'int', but argument 3 has type 'plm_long' {aka 'long int'} [-Wformat=] 301 | fprintf (fp, "image_dim=%d %d\n", | ~^ | | | int | %ld 302 | d_ptr->image_dim[0], d_ptr->image_dim[1]); | ~~~~~~~~~~~~~~~~~~~ | | | plm_long {aka long int} /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_volume.cxx:301:33: warning: format '%d' expects argument of type 'int', but argument 4 has type 'plm_long' {aka 'long int'} [-Wformat=] 301 | fprintf (fp, "image_dim=%d %d\n", | ~^ | | | int | %ld 302 | d_ptr->image_dim[0], d_ptr->image_dim[1]); | ~~~~~~~~~~~~~~~~~~~ | | | plm_long {aka long int} [ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rasterizer.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rasterizer.cxx.o -MF CMakeFiles/plmbase.dir/rasterizer.cxx.o.d -o CMakeFiles/plmbase.dir/rasterizer.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rasterizer.cxx [ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/raw_pointset.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/raw_pointset.cxx.o -MF CMakeFiles/plmbase.dir/raw_pointset.cxx.o.d -o CMakeFiles/plmbase.dir/raw_pointset.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/raw_pointset.cxx [ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o -MF CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o.d -o CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/ray_trace_probe.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/raw_pointset.cxx: In function 'Raw_pointset* pointset_load_fcsv(const char*)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/raw_pointset.cxx:81:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 81 | fgets (s, 1024, fp); | ~~~~~~^~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/raw_pointset.cxx: In function 'Raw_pointset* pointset_load_txt(const char*)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/raw_pointset.cxx:135:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 135 | fgets (s, 1024, fp); | ~~~~~~^~~~~~~~~~~~~ [ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o -MF CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o.d -o CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/ray_trace_uniform.cxx [ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume.cxx.o -MF CMakeFiles/plmbase.dir/rpl_volume.cxx.o.d -o CMakeFiles/plmbase.dir/rpl_volume.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rpl_volume.cxx [ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o -MF CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o.d -o CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rpl_volume_lut.cxx [ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o -MF CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o.d -o CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rtds_dcmtk.cxx [ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rt_study.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rt_study.cxx.o -MF CMakeFiles/plmbase.dir/rt_study.cxx.o.d -o CMakeFiles/plmbase.dir/rt_study.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rt_study.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rpl_volume.cxx: In member function 'void Rpl_volume::apply_beam_modifiers()': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rpl_volume.cxx:1471:22: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat=] 1471 | printf ("ires = %d %d\n", ires[0], ires[1]); | ~^ ~~~~~~~ | | | | int long int | %ld /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rpl_volume.cxx:1471:25: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 1471 | printf ("ires = %d %d\n", ires[0], ires[1]); | ~^ ~~~~~~~ | | | | int long int | %ld [ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp 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/usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o -MF CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o.d -o CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rt_study_metadata.cxx [ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtog_io.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtog_io.cxx.o -MF CMakeFiles/plmbase.dir/rtog_io.cxx.o.d -o CMakeFiles/plmbase.dir/rtog_io.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rtog_io.cxx [ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtss.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register 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-I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtss.cxx.o -MF CMakeFiles/plmbase.dir/rtss.cxx.o.d -o CMakeFiles/plmbase.dir/rtss.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rtss.cxx [ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_contour.cxx.o 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-I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_contour.cxx.o -MF CMakeFiles/plmbase.dir/rtss_contour.cxx.o.d -o CMakeFiles/plmbase.dir/rtss_contour.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rtss_contour.cxx [ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_roi.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_roi.cxx.o -MF CMakeFiles/plmbase.dir/rtss_roi.cxx.o.d -o CMakeFiles/plmbase.dir/rtss_roi.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rtss_roi.cxx [ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan.cxx.o -MF CMakeFiles/plmbase.dir/rtplan.cxx.o.d -o CMakeFiles/plmbase.dir/rtplan.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rtplan.cxx [ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_beam.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_beam.cxx.o -MF CMakeFiles/plmbase.dir/rtplan_beam.cxx.o.d -o CMakeFiles/plmbase.dir/rtplan_beam.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rtplan_beam.cxx [ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME 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-I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o -MF CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o.d -o CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rtplan_control_pt.cxx [ 27%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/segmentation.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/segmentation.cxx.o -MF CMakeFiles/plmbase.dir/segmentation.cxx.o.d -o CMakeFiles/plmbase.dir/segmentation.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/segmentation.cxx [ 27%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/slice_extract.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/slice_extract.cxx.o -MF CMakeFiles/plmbase.dir/slice_extract.cxx.o.d -o CMakeFiles/plmbase.dir/slice_extract.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/slice_extract.cxx [ 27%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/slice_list.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/slice_list.cxx.o -MF CMakeFiles/plmbase.dir/slice_list.cxx.o.d -o CMakeFiles/plmbase.dir/slice_list.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/slice_list.cxx [ 28%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ss_img_extract.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/ss_img_extract.cxx.o -MF CMakeFiles/plmbase.dir/ss_img_extract.cxx.o.d -o CMakeFiles/plmbase.dir/ss_img_extract.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/ss_img_extract.cxx [ 28%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ss_list_io.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/ss_list_io.cxx.o -MF CMakeFiles/plmbase.dir/ss_list_io.cxx.o.d -o CMakeFiles/plmbase.dir/ss_list_io.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/ss_list_io.cxx [ 28%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/threading.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/threading.cxx.o -MF CMakeFiles/plmbase.dir/threading.cxx.o.d -o CMakeFiles/plmbase.dir/threading.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/threading.cxx [ 28%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/thumbnail.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/thumbnail.cxx.o -MF CMakeFiles/plmbase.dir/thumbnail.cxx.o.d -o CMakeFiles/plmbase.dir/thumbnail.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/thumbnail.cxx [ 29%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/vf.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/vf.cxx.o -MF CMakeFiles/plmbase.dir/vf.cxx.o.d -o CMakeFiles/plmbase.dir/vf.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/vf.cxx [ 29%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/vf_convolve.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/vf_convolve.cxx.o -MF CMakeFiles/plmbase.dir/vf_convolve.cxx.o.d -o CMakeFiles/plmbase.dir/vf_convolve.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/vf_convolve.cxx [ 29%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/vf_jacobian.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/vf_jacobian.cxx.o -MF CMakeFiles/plmbase.dir/vf_jacobian.cxx.o.d -o CMakeFiles/plmbase.dir/vf_jacobian.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/vf_jacobian.cxx [ 29%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/vf_stats.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/vf_stats.cxx.o -MF CMakeFiles/plmbase.dir/vf_stats.cxx.o.d -o CMakeFiles/plmbase.dir/vf_stats.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/vf_stats.cxx [ 30%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume.cxx.o -MF CMakeFiles/plmbase.dir/volume.cxx.o.d -o CMakeFiles/plmbase.dir/volume.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/volume.cxx [ 30%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_boundary_behavior.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_boundary_behavior.cxx.o -MF CMakeFiles/plmbase.dir/volume_boundary_behavior.cxx.o.d -o CMakeFiles/plmbase.dir/volume_boundary_behavior.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/volume_boundary_behavior.cxx [ 30%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_conv.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_conv.cxx.o -MF CMakeFiles/plmbase.dir/volume_conv.cxx.o.d -o CMakeFiles/plmbase.dir/volume_conv.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/volume_conv.cxx [ 30%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_fill.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_fill.cxx.o -MF CMakeFiles/plmbase.dir/volume_fill.cxx.o.d -o CMakeFiles/plmbase.dir/volume_fill.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/volume_fill.cxx [ 31%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_gaussian.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_gaussian.cxx.o -MF CMakeFiles/plmbase.dir/volume_gaussian.cxx.o.d -o CMakeFiles/plmbase.dir/volume_gaussian.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/volume_gaussian.cxx [ 31%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_grad.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_grad.cxx.o -MF CMakeFiles/plmbase.dir/volume_grad.cxx.o.d -o CMakeFiles/plmbase.dir/volume_grad.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/volume_grad.cxx [ 31%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_header.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_header.cxx.o -MF CMakeFiles/plmbase.dir/volume_header.cxx.o.d -o CMakeFiles/plmbase.dir/volume_header.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/volume_header.cxx [ 31%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_limit.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_limit.cxx.o -MF CMakeFiles/plmbase.dir/volume_limit.cxx.o.d -o CMakeFiles/plmbase.dir/volume_limit.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/volume_limit.cxx [ 32%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_resample.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_resample.cxx.o -MF CMakeFiles/plmbase.dir/volume_resample.cxx.o.d -o CMakeFiles/plmbase.dir/volume_resample.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/volume_resample.cxx [ 32%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_stats.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/volume_stats.cxx.o -MF CMakeFiles/plmbase.dir/volume_stats.cxx.o.d -o CMakeFiles/plmbase.dir/volume_stats.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/volume_stats.cxx [ 32%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xform.cxx.o -MF CMakeFiles/plmbase.dir/xform.cxx.o.d -o CMakeFiles/plmbase.dir/xform.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform.cxx [ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform_convert.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xform_convert.cxx.o -MF CMakeFiles/plmbase.dir/xform_convert.cxx.o.d -o CMakeFiles/plmbase.dir/xform_convert.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_convert.cxx [ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform_legacy.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xform_legacy.cxx.o -MF CMakeFiles/plmbase.dir/xform_legacy.cxx.o.d -o CMakeFiles/plmbase.dir/xform_legacy.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx [ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform_point.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xform_point.cxx.o -MF CMakeFiles/plmbase.dir/xform_point.cxx.o.d -o CMakeFiles/plmbase.dir/xform_point.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_point.cxx [ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct.cxx.o -MF CMakeFiles/plmbase.dir/xio_ct.cxx.o.d -o CMakeFiles/plmbase.dir/xio_ct.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_ct.cxx [ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o -MF CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o.d -o CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_ct_transform.cxx [ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_demographic.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_demographic.cxx.o -MF CMakeFiles/plmbase.dir/xio_demographic.cxx.o.d -o CMakeFiles/plmbase.dir/xio_demographic.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_demographic.cxx [ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dir.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dir.cxx.o -MF CMakeFiles/plmbase.dir/xio_dir.cxx.o.d -o CMakeFiles/plmbase.dir/xio_dir.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_dir.cxx [ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dose.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dose.cxx.o -MF CMakeFiles/plmbase.dir/xio_dose.cxx.o.d -o CMakeFiles/plmbase.dir/xio_dose.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_dose.cxx [ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_patient.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_patient.cxx.o -MF CMakeFiles/plmbase.dir/xio_patient.cxx.o.d -o CMakeFiles/plmbase.dir/xio_patient.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_patient.cxx [ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_plan.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_plan.cxx.o -MF CMakeFiles/plmbase.dir/xio_plan.cxx.o.d -o CMakeFiles/plmbase.dir/xio_plan.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_plan.cxx [ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_structures.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_structures.cxx.o -MF CMakeFiles/plmbase.dir/xio_structures.cxx.o.d -o CMakeFiles/plmbase.dir/xio_structures.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_structures.cxx [ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_studyset.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_studyset.cxx.o -MF CMakeFiles/plmbase.dir/xio_studyset.cxx.o.d -o CMakeFiles/plmbase.dir/xio_studyset.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_studyset.cxx [ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xpm.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xpm.cxx.o -MF CMakeFiles/plmbase.dir/xpm.cxx.o.d -o CMakeFiles/plmbase.dir/xpm.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xpm.cxx [ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_file.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_file.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_file.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_file.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_file.cxx [ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_image.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_image.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_image.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_image.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_image.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx: In function 'void xform_legacy_save_itk_bsp(itk::BSplineDeformableTransform::Pointer, const char*)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:230:40: warning: format '%d' expects argument of type 'int', but argument 2 has type 'itk::Transform::NumberOfParametersType' {aka 'long unsigned int'} [-Wformat=] 230 | printf (" # of parameters=%d\n", transform->GetBulkTransform()->GetNumberOfParameters()); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int itk::Transform::NumberOfParametersType {aka long unsigned int} | %ld [ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_metadata.cxx [ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_module.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_module.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_module.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_module.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_module.cxx [ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rdd.cxx [ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rtdose.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx: In function 'void xform_legacy_load(Xform*, FILE*)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:37:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 37 | fgets (buf,1024,fp); | ~~~~~~^~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:99:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:100:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 100 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:103:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:141:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 141 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:150:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 150 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:156:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 156 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:168:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 168 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ [ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rtss.cxx [ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_dose.cxx: In function 'void xio_dose_load_header(Xio_dose_header*, const char*)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_dose.cxx:73:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 73 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_dose.cxx:82:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 82 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_dose.cxx:86:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 86 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_dose.cxx:90:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 90 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_dose.cxx:101:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_dose.cxx:106:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 106 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_dose.cxx:117:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 117 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_dose.cxx:120:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 120 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_dose.cxx:135:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 135 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rt_study.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_structures.cxx: In function 'void add_cms_structure(Rtss*, const Xio_studyset&, const char*, float)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_structures.cxx:111:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 111 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_structures.cxx:112:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 112 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_structures.cxx:113:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_structures.cxx:114:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 114 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_structures.cxx:115:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 115 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_structures.cxx:125:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 125 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_structures.cxx:132:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 132 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_structures.cxx:175:19: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 175 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ [ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rt_study_p.cxx [ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_series.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_series.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_series.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_series.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_series.cxx [ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac 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-ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_uid.cxx [ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_util.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_util.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_util.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_util.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_util.cxx [ 40%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmbase_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o -MF CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o.d -o CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/ray_trace_exact.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx: In member function 'void Dcmtk_rt_study::rt_ion_plan_load()': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx:101:30: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=] 101 | printf (">> Num beams = %d\n", num_beams); | ~^ ~~~~~~~~~ | | | | int long unsigned int | %ld /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx:142:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=] 142 | printf (">> Adding beam (%d cp)\n", num_cp); | ~^ ~~~~~~ | | | | int long unsigned int | %ld /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx:208:37: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat=] 208 | printf (">> Adding cp (%d spots)\n", num_spots); | ~^ ~~~~~~~~~ | | | | int long int | %ld [ 40%] Linking CXX shared library ../../../libplmbase.so cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/cmake 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/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libnkidecompress.a ../../../libplmsys.so.1.9 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 -lminc2 -lm -lz -lnetcdf /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lm -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lpthread -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/cmake -E cmake_symlink_library ../../../libplmbase.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmbase.so make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 40%] Built target plmbase make -f src/plastimatch/util/CMakeFiles/plmutil.dir/build.make src/plastimatch/util/CMakeFiles/plmutil.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util/CMakeFiles/plmutil.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/util/CMakeFiles/plmutil.dir/build.make src/plastimatch/util/CMakeFiles/plmutil.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 40%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dice_statistics.cxx.o [ 40%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o [ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/bspline_correspond.cxx.o [ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/distance_map.cxx.o [ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/diff.cxx.o [ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dvh.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/bspline_correspond.cxx.o -MF CMakeFiles/plmutil.dir/bspline_correspond.cxx.o.d -o CMakeFiles/plmutil.dir/bspline_correspond.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/bspline_correspond.cxx [ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o [ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/geometry_chooser.cxx.o [ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o [ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_boundary.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/dice_statistics.cxx.o -MF CMakeFiles/plmutil.dir/dice_statistics.cxx.o.d -o CMakeFiles/plmutil.dir/dice_statistics.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/dice_statistics.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o -MF CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o.d -o CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/dicom_sro_save.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/distance_map.cxx.o -MF CMakeFiles/plmutil.dir/distance_map.cxx.o.d -o CMakeFiles/plmutil.dir/distance_map.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/distance_map.cxx [ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_center.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/diff.cxx.o -MF CMakeFiles/plmutil.dir/diff.cxx.o.d -o CMakeFiles/plmutil.dir/diff.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/diff.cxx [ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_adjust.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/dvh.cxx.o -MF CMakeFiles/plmutil.dir/dvh.cxx.o.d -o CMakeFiles/plmutil.dir/dvh.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/dvh.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o -MF CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o.d -o CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/gamma_dose_comparison.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/geometry_chooser.cxx.o -MF CMakeFiles/plmutil.dir/geometry_chooser.cxx.o.d -o CMakeFiles/plmutil.dir/geometry_chooser.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/geometry_chooser.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o -MF CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o.d -o CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/hausdorff_distance.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/image_boundary.cxx.o -MF CMakeFiles/plmutil.dir/image_boundary.cxx.o.d -o CMakeFiles/plmutil.dir/image_boundary.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/image_boundary.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/image_center.cxx.o -MF CMakeFiles/plmutil.dir/image_center.cxx.o.d -o CMakeFiles/plmutil.dir/image_center.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/image_center.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_adjust.cxx.o -MF CMakeFiles/plmutil.dir/itk_adjust.cxx.o.d -o CMakeFiles/plmutil.dir/itk_adjust.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_adjust.cxx [ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_crop.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_crop.cxx.o -MF CMakeFiles/plmutil.dir/itk_crop.cxx.o.d -o CMakeFiles/plmutil.dir/itk_crop.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_crop.cxx [ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_gabor.cxx.o [ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_distance_map.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_distance_map.cxx.o -MF CMakeFiles/plmutil.dir/itk_distance_map.cxx.o.d -o CMakeFiles/plmutil.dir/itk_distance_map.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_distance_map.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_gabor.cxx.o -MF CMakeFiles/plmutil.dir/itk_gabor.cxx.o.d -o CMakeFiles/plmutil.dir/itk_gabor.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_gabor.cxx [ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o -MF CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o.d -o CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_histogram_matching.cxx [ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_intersect.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_intersect.cxx.o -MF CMakeFiles/plmutil.dir/itk_intersect.cxx.o.d -o CMakeFiles/plmutil.dir/itk_intersect.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_intersect.cxx [ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_local_intensity_correction.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_local_intensity_correction.cxx.o -MF CMakeFiles/plmutil.dir/itk_local_intensity_correction.cxx.o.d -o CMakeFiles/plmutil.dir/itk_local_intensity_correction.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_local_intensity_correction.cxx [ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_mask.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_mask.cxx.o -MF CMakeFiles/plmutil.dir/itk_mask.cxx.o.d -o CMakeFiles/plmutil.dir/itk_mask.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_mask.cxx [ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_scale.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_scale.cxx.o -MF CMakeFiles/plmutil.dir/itk_scale.cxx.o.d -o CMakeFiles/plmutil.dir/itk_scale.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_scale.cxx [ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_threshold.cxx.o [ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_union.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_threshold.cxx.o -MF CMakeFiles/plmutil.dir/itk_threshold.cxx.o.d -o CMakeFiles/plmutil.dir/itk_threshold.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_threshold.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_union.cxx.o -MF CMakeFiles/plmutil.dir/itk_union.cxx.o.d -o CMakeFiles/plmutil.dir/itk_union.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_union.cxx [ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/landmark_diff.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/landmark_diff.cxx.o -MF CMakeFiles/plmutil.dir/landmark_diff.cxx.o.d -o CMakeFiles/plmutil.dir/landmark_diff.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/landmark_diff.cxx [ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/proj_image_filter.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/proj_image_filter.cxx.o -MF CMakeFiles/plmutil.dir/proj_image_filter.cxx.o.d -o CMakeFiles/plmutil.dir/proj_image_filter.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/proj_image_filter.cxx [ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/plm_series.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/plm_series.cxx.o -MF CMakeFiles/plmutil.dir/plm_series.cxx.o.d -o CMakeFiles/plmutil.dir/plm_series.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/plm_series.cxx [ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/plm_study.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/plm_study.cxx.o -MF CMakeFiles/plmutil.dir/plm_study.cxx.o.d -o CMakeFiles/plmutil.dir/plm_study.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/plm_study.cxx [ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/rt_study_warp.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/rt_study_warp.cxx.o -MF CMakeFiles/plmutil.dir/rt_study_warp.cxx.o.d -o CMakeFiles/plmutil.dir/rt_study_warp.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/rt_study_warp.cxx [ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/sift.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/sift.cxx.o -MF CMakeFiles/plmutil.dir/sift.cxx.o.d -o CMakeFiles/plmutil.dir/sift.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/sift.cxx [ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/simplify_points.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/simplify_points.cxx.o -MF CMakeFiles/plmutil.dir/simplify_points.cxx.o.d -o CMakeFiles/plmutil.dir/simplify_points.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/simplify_points.cxx [ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/ss_img_stats.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/ss_img_stats.cxx.o -MF CMakeFiles/plmutil.dir/ss_img_stats.cxx.o.d -o CMakeFiles/plmutil.dir/ss_img_stats.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/ss_img_stats.cxx [ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/synthetic_mha.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/synthetic_mha.cxx.o -MF CMakeFiles/plmutil.dir/synthetic_mha.cxx.o.d -o CMakeFiles/plmutil.dir/synthetic_mha.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/synthetic_mha.cxx [ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/synthetic_vf.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/synthetic_vf.cxx.o -MF CMakeFiles/plmutil.dir/synthetic_vf.cxx.o.d -o CMakeFiles/plmutil.dir/synthetic_vf.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/synthetic_vf.cxx [ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/threshbox.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/threshbox.cxx.o -MF CMakeFiles/plmutil.dir/threshbox.cxx.o.d -o CMakeFiles/plmutil.dir/threshbox.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/threshbox.cxx [ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/volume_adjust.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/volume_adjust.cxx.o -MF CMakeFiles/plmutil.dir/volume_adjust.cxx.o.d -o CMakeFiles/plmutil.dir/volume_adjust.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/volume_adjust.cxx [ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o -MF CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o.d -o CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/volume_boundary_type.cxx [ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/xf_invert.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/xf_invert.cxx.o -MF CMakeFiles/plmutil.dir/xf_invert.cxx.o.d -o CMakeFiles/plmutil.dir/xf_invert.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/xf_invert.cxx [ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/zcrop.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/zcrop.cxx.o -MF CMakeFiles/plmutil.dir/zcrop.cxx.o.d -o CMakeFiles/plmutil.dir/zcrop.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/zcrop.cxx [ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/gabor.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/gabor.cxx.o -MF CMakeFiles/plmutil.dir/gabor.cxx.o.d -o CMakeFiles/plmutil.dir/gabor.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/gabor.cxx [ 51%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/ramp_filter.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmutil_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/ramp_filter.cxx.o -MF CMakeFiles/plmutil.dir/ramp_filter.cxx.o.d -o CMakeFiles/plmutil.dir/ramp_filter.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/ramp_filter.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/threshbox.cxx: In function 'void do_overlap_fraction(Threshbox_parms*)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/threshbox.cxx:257:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 257 | fscanf(fp1, "%s", tmpbuf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/threshbox.cxx:258:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 258 | fscanf(fp1, "%f %f %f", &phys_max1[0], &phys_max1[1], &phys_max1[2]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/threshbox.cxx:266:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 266 | fscanf(fp2, "%s", tmpbuf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/threshbox.cxx:267:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 267 | fscanf(fp2, "%f %f %f", &phys_max2[0], &phys_max2[1], &phys_max2[2]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 51%] Linking CXX shared library ../../../libplmutil.so cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmutil.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libplmutil.so.1.9 -o ../../../libplmutil.so.1.9 CMakeFiles/plmutil.dir/bspline_correspond.cxx.o CMakeFiles/plmutil.dir/dice_statistics.cxx.o CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o CMakeFiles/plmutil.dir/distance_map.cxx.o CMakeFiles/plmutil.dir/diff.cxx.o CMakeFiles/plmutil.dir/dvh.cxx.o CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o CMakeFiles/plmutil.dir/geometry_chooser.cxx.o CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o CMakeFiles/plmutil.dir/image_boundary.cxx.o CMakeFiles/plmutil.dir/image_center.cxx.o CMakeFiles/plmutil.dir/itk_adjust.cxx.o CMakeFiles/plmutil.dir/itk_crop.cxx.o CMakeFiles/plmutil.dir/itk_distance_map.cxx.o CMakeFiles/plmutil.dir/itk_gabor.cxx.o CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o CMakeFiles/plmutil.dir/itk_intersect.cxx.o CMakeFiles/plmutil.dir/itk_local_intensity_correction.cxx.o CMakeFiles/plmutil.dir/itk_mask.cxx.o CMakeFiles/plmutil.dir/itk_scale.cxx.o CMakeFiles/plmutil.dir/itk_threshold.cxx.o CMakeFiles/plmutil.dir/itk_union.cxx.o CMakeFiles/plmutil.dir/landmark_diff.cxx.o CMakeFiles/plmutil.dir/proj_image_filter.cxx.o CMakeFiles/plmutil.dir/plm_series.cxx.o CMakeFiles/plmutil.dir/plm_study.cxx.o CMakeFiles/plmutil.dir/rt_study_warp.cxx.o CMakeFiles/plmutil.dir/sift.cxx.o CMakeFiles/plmutil.dir/simplify_points.cxx.o CMakeFiles/plmutil.dir/ss_img_stats.cxx.o CMakeFiles/plmutil.dir/synthetic_mha.cxx.o CMakeFiles/plmutil.dir/synthetic_vf.cxx.o CMakeFiles/plmutil.dir/threshbox.cxx.o CMakeFiles/plmutil.dir/volume_adjust.cxx.o CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o CMakeFiles/plmutil.dir/xf_invert.cxx.o CMakeFiles/plmutil.dir/zcrop.cxx.o CMakeFiles/plmutil.dir/gabor.cxx.o CMakeFiles/plmutil.dir/ramp_filter.cxx.o -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include -lfftw3f -lfftw3 ../../../libdevillard.a ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lpthread -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect -lminc2 -lm -lz -lnetcdf -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect -lminc2 -lm -lz -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 -lz -ljpeg /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -ldl /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lm ../../../libnkidecompress.a cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/cmake -E cmake_symlink_library ../../../libplmutil.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmutil.so make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 51%] Built target plmutil make -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/depend make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/depend make -f src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build.make src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose/CMakeFiles/plmdose.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register/CMakeFiles/plmregister.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/build make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build.make src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 51%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o [ 51%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline.cxx.o -MF CMakeFiles/plmregister.dir/bspline.cxx.o.d -o CMakeFiles/plmregister.dir/bspline.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline.cxx [ 51%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o -MF CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o.d -o CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/bowtie_correction.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o -MF CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_landmarks.cxx [ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_options.cxx.o [ 53%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_calc.cxx.o [ 53%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_gm.cxx.o [ 54%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mi.cxx.o [ 54%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mse.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_options.cxx.o -MF CMakeFiles/plmreconstruct.dir/drr_options.cxx.o.d -o CMakeFiles/plmreconstruct.dir/drr_options.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/drr_options.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_calc.cxx.o -MF CMakeFiles/plmdose.dir/beam_calc.cxx.o.d -o CMakeFiles/plmdose.dir/beam_calc.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/beam_calc.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_gm.cxx.o -MF CMakeFiles/plmregister.dir/bspline_gm.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_gm.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_gm.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mse.cxx.o -MF CMakeFiles/plmregister.dir/bspline_mse.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_mse.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_mse.cxx [ 54%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr.cxx.o -MF CMakeFiles/plmreconstruct.dir/drr.cxx.o.d -o CMakeFiles/plmreconstruct.dir/drr.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/drr.cxx [ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_map.cxx.o [ 54%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mi.cxx.o -MF CMakeFiles/plmregister.dir/bspline_mi.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_mi.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_mi.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o -MF CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o.d -o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/drr_trilin.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_map.cxx.o -MF CMakeFiles/plmdose.dir/beam_map.cxx.o.d -o CMakeFiles/plmdose.dir/beam_map.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/beam_map.cxx [ 54%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk.cxx.o [ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/bragg_curve.cxx.o [ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/compute_dose.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk.cxx.o -MF CMakeFiles/plmreconstruct.dir/fdk.cxx.o.d -o CMakeFiles/plmreconstruct.dir/fdk.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/fdk.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/bragg_curve.cxx.o -MF CMakeFiles/plmdose.dir/bragg_curve.cxx.o.d -o CMakeFiles/plmdose.dir/bragg_curve.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/bragg_curve.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/compute_dose.cxx.o -MF CMakeFiles/plmdose.dir/compute_dose.cxx.o.d -o CMakeFiles/plmdose.dir/compute_dose.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/compute_dose.cxx [ 55%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o -MF CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o.d -o CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/dose_volume_functions.cxx [ 55%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/particle_type.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/particle_type.cxx.o -MF CMakeFiles/plmdose.dir/particle_type.cxx.o.d -o CMakeFiles/plmdose.dir/particle_type.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/particle_type.cxx [ 55%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_beam_model.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_beam_model.cxx.o -MF CMakeFiles/plmdose.dir/rt_beam_model.cxx.o.d -o CMakeFiles/plmdose.dir/rt_beam_model.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_beam_model.cxx [ 55%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmreconstruct_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -MF CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o.d -o CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/fdk_util.cxx [ 55%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o -MF CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o.d -o CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx: In member function 'bool Rt_depth_dose::load(const char*)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:64:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 64 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx: In member function 'bool Rt_depth_dose::load_xio(const char*)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:86:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 86 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:90:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 90 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:103:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:114:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 114 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:125:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 125 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_dij.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_dij.cxx.o -MF CMakeFiles/plmdose.dir/rt_dij.cxx.o.d -o CMakeFiles/plmdose.dir/rt_dij.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_dij.cxx [ 56%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_lut.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_lut.cxx.o -MF CMakeFiles/plmdose.dir/rt_lut.cxx.o.d -o CMakeFiles/plmdose.dir/rt_lut.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_lut.cxx [ 56%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_spot_map.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_spot_map.cxx.o -MF CMakeFiles/plmdose.dir/rt_spot_map.cxx.o.d -o CMakeFiles/plmdose.dir/rt_spot_map.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_spot_map.cxx [ 56%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_optimize.cxx [ 56%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_optimize_lbfgsb.cxx [ 56%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_mebs.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_mebs.cxx.o -MF CMakeFiles/plmdose.dir/rt_mebs.cxx.o.d -o CMakeFiles/plmdose.dir/rt_mebs.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_mebs.cxx [ 57%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_parms.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_parms.cxx.o -MF CMakeFiles/plmdose.dir/rt_parms.cxx.o.d -o CMakeFiles/plmdose.dir/rt_parms.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_parms.cxx [ 57%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/plan_calc.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/plan_calc.cxx.o -MF CMakeFiles/plmdose.dir/plan_calc.cxx.o.d -o CMakeFiles/plmdose.dir/plan_calc.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/plan_calc.cxx [ 57%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_sigma.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_sigma.cxx.o -MF CMakeFiles/plmdose.dir/rt_sigma.cxx.o.d -o CMakeFiles/plmdose.dir/rt_sigma.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_sigma.cxx [ 58%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_optimize_liblbfgs.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/beam_calc.cxx: In member function 'bool Beam_calc::load(const char*)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/beam_calc.cxx:194:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 194 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ [ 58%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_optimize_nlopt.cxx [ 59%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/wed_parms.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmdose_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/wed_parms.cxx.o -MF CMakeFiles/plmdose.dir/wed_parms.cxx.o.d -o CMakeFiles/plmdose.dir/wed_parms.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/wed_parms.cxx [ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_optimize_steepest.cxx [ 60%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_parms.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_parms.cxx.o -MF CMakeFiles/plmregister.dir/bspline_parms.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_parms.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_parms.cxx [ 60%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_score.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_score.cxx.o -MF CMakeFiles/plmregister.dir/bspline_score.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_score.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_score.cxx [ 61%] Linking CXX shared library ../../../libplmreconstruct.so cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmreconstruct.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libplmreconstruct.so.1.9 -o ../../../libplmreconstruct.so.1.9 CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o CMakeFiles/plmreconstruct.dir/drr.cxx.o CMakeFiles/plmreconstruct.dir/drr_options.cxx.o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o CMakeFiles/plmreconstruct.dir/fdk.cxx.o CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect -lminc2 -lm -lz -lnetcdf -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect -lminc2 -lm -lz -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lm ../../../libnkidecompress.a -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lpthread -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lfftw3f -lfftw3 ../../../libdevillard.a [ 61%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_stage.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_stage.cxx.o -MF CMakeFiles/plmregister.dir/bspline_stage.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_stage.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_stage.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_dij.cxx: In member function 'void Rt_dij::dump(const std::string&) const': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_dij.cxx:51:28: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long unsigned int' [-Wformat=] 51 | fprintf (fp, "%d %f\n", c->index, c->dose); | ~^ ~~~~~~~~ | | | | int long unsigned int | %ld /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/wed_parms.cxx: In member function 'int Wed_parms::set_key_val(const char*, const char*, int)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/wed_parms.cxx:237:32: warning: format '%i' expects argument of type 'int*', but argument 3 has type 'plm_long*' {aka 'long int*'} [-Wformat=] 237 | if (sscanf (val, "%i %i", | ~^ | | | int* | %li 238 | &(this->ires[0]), | ~~~~~~~~~~~~~~~~ | | | plm_long* {aka long int*} /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/wed_parms.cxx:237:35: warning: format '%i' expects argument of type 'int*', but argument 4 has type 'plm_long*' {aka 'long int*'} [-Wformat=] 237 | if (sscanf (val, "%i %i", | ~^ | | | int* | %li 238 | &(this->ires[0]), 239 | &(this->ires[1])) != 2) | ~~~~~~~~~~~~~~~~ | | | plm_long* {aka long int*} /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_mebs.cxx: In member function 'void Rt_mebs::load_beamlet_map(Aperture::Pointer&)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_mebs.cxx:1129:52: warning: format '%d' expects argument of type 'int', but argument 2 has type 'plm_long' {aka 'long int'} [-Wformat=] 1129 | printf("beamlet line number expected: %d, beamlet line detected: %d.\n", ap->get_dim(1), line_number); | ~^ ~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_mebs.cxx:1180:56: warning: format '%d' expects argument of type 'int', but argument 3 has type 'plm_long' {aka 'long int'} [-Wformat=] 1180 | printf("line %d: beamlet number expected: %d, beamlet number detected: %d.\n", line_number, ap->get_dim(0), beamlet_number); | ~^ ~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_mebs.cxx:1189:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'plm_long' {aka 'long int'} [-Wformat=] 1189 | printf("beamlet line number expected: %d, beamlet line detected: %d.\n", ap->get_dim(1), line_number); | ~^ ~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_mebs.cxx: In member function 'void Rt_mebs::compute_particle_number_matrix_from_target_active(Rpl_volume*, std::vector&, std::vector&)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_mebs.cxx:1213:33: warning: format '%d' expects argument of type 'int', but argument 2 has type 'plm_long' {aka 'long int'} [-Wformat=] 1213 | printf("Aperture size: %d, min depth map size: %d, max depth map size: %d.\n", rpl_vol->get_aperture()->get_dim(0) * rpl_vol->get_aperture()->get_dim(1), (int) wepl_min.size(), (int) wepl_max.size()); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_mebs.cxx: In member function 'void Rt_mebs::export_as_txt(const std::string&, Aperture::Pointer)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_mebs.cxx:1385:18: warning: format '%d' expects argument of type 'int', but argument 2 has type 'plm_long' {aka 'long int'} [-Wformat=] 1385 | printf ("Ap %d %d\n", ap->get_dim(0), ap->get_dim(1)); | ~^ ~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_mebs.cxx:1385:21: warning: format '%d' expects argument of type 'int', but argument 3 has type 'plm_long' {aka 'long int'} [-Wformat=] 1385 | printf ("Ap %d %d\n", ap->get_dim(0), ap->get_dim(1)); | ~^ ~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld [ 61%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_state.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_state.cxx.o -MF CMakeFiles/plmregister.dir/bspline_state.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_state.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_state.cxx [ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_regularize.cxx [ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_regularize_analytic.cxx [ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_regularize_numeric.cxx [ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_regularize_semi_analytic.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/cmake -E cmake_symlink_library ../../../libplmreconstruct.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmreconstruct.so [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/demons.cxx.o -MF CMakeFiles/plmregister.dir/demons.cxx.o.d -o CMakeFiles/plmregister.dir/demons.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/demons.cxx [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons_cpu.cxx.o make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/demons_cpu.cxx.o -MF CMakeFiles/plmregister.dir/demons_cpu.cxx.o.d -o CMakeFiles/plmregister.dir/demons_cpu.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/demons_cpu.cxx [ 63%] Built target plmreconstruct [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons_state.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/demons_state.cxx.o -MF CMakeFiles/plmregister.dir/demons_state.cxx.o.d -o CMakeFiles/plmregister.dir/demons_state.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/demons_state.cxx [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/gpuit_demons.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/gpuit_demons.cxx.o -MF CMakeFiles/plmregister.dir/gpuit_demons.cxx.o.d -o CMakeFiles/plmregister.dir/gpuit_demons.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/gpuit_demons.cxx [ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/groupwise_parms.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/groupwise_parms.cxx.o -MF CMakeFiles/plmregister.dir/groupwise_parms.cxx.o.d -o CMakeFiles/plmregister.dir/groupwise_parms.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/groupwise_parms.cxx [ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/histogram.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/histogram.cxx.o -MF CMakeFiles/plmregister.dir/histogram.cxx.o.d -o CMakeFiles/plmregister.dir/histogram.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/histogram.cxx [ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_align_center.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_align_center.cxx.o -MF CMakeFiles/plmregister.dir/itk_align_center.cxx.o.d -o CMakeFiles/plmregister.dir/itk_align_center.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_align_center.cxx [ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_demons.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_demons.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/plan_calc.cxx: In member function 'void Plan_calc::normalize_beam_dose(Beam_calc*)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/plan_calc.cxx:424:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'plm_long' {aka 'long int'} [-Wformat=] 424 | printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1)); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/plan_calc.cxx:424:52: warning: format '%d' expects argument of type 'int', but argument 3 has type 'plm_long' {aka 'long int'} [-Wformat=] 424 | printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1)); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/plan_calc.cxx:438:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'plm_long' {aka 'long int'} [-Wformat=] 438 | printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1)); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/plan_calc.cxx:438:52: warning: format '%d' expects argument of type 'int', but argument 3 has type 'plm_long' {aka 'long int'} [-Wformat=] 438 | printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1)); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/plan_calc.cxx:452:44: warning: format '%d' expects argument of type 'int', but argument 2 has type 'plm_long' {aka 'long int'} [-Wformat=] 452 | printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1)); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/plan_calc.cxx:452:48: warning: format '%d' expects argument of type 'int', but argument 3 has type 'plm_long' {aka 'long int'} [-Wformat=] 452 | printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1)); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/plan_calc.cxx: In member function 'void Plan_calc::print_verif()': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/plan_calc.cxx:759:73: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat=] 759 | printf("\n i_res: "); for (int i = 0; i < num_beams; i++) {printf("%d %d ** ", d_ptr->beam_storage[i]->get_aperture()->get_dim()[0], d_ptr->beam_storage[i]->get_aperture()->get_dim()[1]);} | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long int | %ld /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/plan_calc.cxx:759:76: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 759 | printf("\n i_res: "); for (int i = 0; i < num_beams; i++) {printf("%d %d ** ", d_ptr->beam_storage[i]->get_aperture()->get_dim()[0], d_ptr->beam_storage[i]->get_aperture()->get_dim()[1]);} | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long int | %ld [ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons_util.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons_util.cxx.o -MF CMakeFiles/plmregister.dir/itk_demons_util.cxx.o.d -o CMakeFiles/plmregister.dir/itk_demons_util.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_demons_util.cxx [ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_diff_demons.cxx [ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_fsf_demons.cxx [ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_log_demons.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_log_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_log_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_log_demons.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_log_demons.cxx [ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_sym_log_demons.cxx [ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_optimizer.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_optimizer.cxx.o -MF CMakeFiles/plmregister.dir/itk_optimizer.cxx.o.d -o CMakeFiles/plmregister.dir/itk_optimizer.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_optimizer.cxx [ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration.cxx.o -MF CMakeFiles/plmregister.dir/itk_registration.cxx.o.d -o CMakeFiles/plmregister.dir/itk_registration.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_registration.cxx [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o -MF CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o.d -o CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_registration_observer.cxx [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_tps.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_tps.cxx.o -MF CMakeFiles/plmregister.dir/itk_tps.cxx.o.d -o CMakeFiles/plmregister.dir/itk_tps.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_tps.cxx [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/joint_histogram.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/joint_histogram.cxx.o -MF CMakeFiles/plmregister.dir/joint_histogram.cxx.o.d -o CMakeFiles/plmregister.dir/joint_histogram.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/joint_histogram.cxx [ 67%] Linking CXX shared library ../../../libplmdose.so cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmdose.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libplmdose.so.1.9 -o ../../../libplmdose.so.1.9 CMakeFiles/plmdose.dir/beam_calc.cxx.o CMakeFiles/plmdose.dir/beam_map.cxx.o CMakeFiles/plmdose.dir/bragg_curve.cxx.o CMakeFiles/plmdose.dir/compute_dose.cxx.o CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o CMakeFiles/plmdose.dir/particle_type.cxx.o CMakeFiles/plmdose.dir/rt_beam_model.cxx.o CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o CMakeFiles/plmdose.dir/rt_dij.cxx.o CMakeFiles/plmdose.dir/rt_lut.cxx.o CMakeFiles/plmdose.dir/rt_spot_map.cxx.o CMakeFiles/plmdose.dir/rt_mebs.cxx.o CMakeFiles/plmdose.dir/rt_parms.cxx.o CMakeFiles/plmdose.dir/plan_calc.cxx.o CMakeFiles/plmdose.dir/rt_sigma.cxx.o CMakeFiles/plmdose.dir/wed_parms.cxx.o -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../../../libplmutil.so.1.9 ../../../libspecfun.a ../../../libplmbase.so.1.9 /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect -lminc2 -lm -lz -lnetcdf -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect -lminc2 -lm -lz -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lm ../../../libnkidecompress.a ../../../libplmsys.so.1.9 -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lpthread -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lfftw3f -lfftw3 ../../../libdevillard.a [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/landmark_warp.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/landmark_warp.cxx.o -MF CMakeFiles/plmregister.dir/landmark_warp.cxx.o.d -o CMakeFiles/plmregister.dir/landmark_warp.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/landmark_warp.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_symlink_library ../../../libplmdose.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmdose.so [ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/metric_parms.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/metric_parms.cxx.o -MF CMakeFiles/plmregister.dir/metric_parms.cxx.o.d -o CMakeFiles/plmregister.dir/metric_parms.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/metric_parms.cxx make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 68%] Built target plmdose [ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/metric_state.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/metric_state.cxx.o -MF CMakeFiles/plmregister.dir/metric_state.cxx.o.d -o CMakeFiles/plmregister.dir/metric_state.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/metric_state.cxx [ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/process_parms.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/process_parms.cxx.o -MF CMakeFiles/plmregister.dir/process_parms.cxx.o.d -o CMakeFiles/plmregister.dir/process_parms.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/process_parms.cxx In file included from /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.h:352, from /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons/itkLogDomainDemonsRegistrationFilterWithMaskExtension.h:5, from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_demons_types.h:14, from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_log_demons.h:8, from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_log_demons.cxx:5: /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx: In instantiation of 'itk::ESMDemonsRegistrationWithMaskFunction::PixelType itk::ESMDemonsRegistrationWithMaskFunction::ComputeUpdate(const NeighborhoodType&, void*, const FloatOffsetType&) [with TFixedImage = itk::Image; TMovingImage = itk::Image; TDeformationField = itk::Image, 3>; PixelType = itk::Vector; NeighborhoodType = itk::ConstNeighborhoodIterator, 3>, itk::ZeroFluxNeumannBoundaryCondition, 3>, itk::Image, 3> > >; FloatOffsetType = itk::Vector]': /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:228:1: required from here /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:279:51: warning: 'bool itk::SpatialObject::IsInside(const PointType&, unsigned int, const std::string&) const [with unsigned int VDimension = 3; PointType = itk::Point; std::string = std::__cxx11::basic_string]' is deprecated [-Wdeprecated-declarations] 279 | if ( !this->GetMovingImageMask()->IsInside(mappedPoint) ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/ITK-5.2/itkLightObject.h:21, from /usr/include/ITK-5.2/itkObject.h:31, from /usr/include/ITK-5.2/itkRegion.h:31, from /usr/include/ITK-5.2/itkImageRegion.h:31, from /usr/include/ITK-5.2/itkImage.h:21, from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_type.h:14, from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_demons_types.h:8: /usr/include/ITK-5.2/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:288:50: warning: 'bool itk::SpatialObject::IsInside(const PointType&, unsigned int, const std::string&) const [with unsigned int VDimension = 3; PointType = itk::Point; std::string = std::__cxx11::basic_string]' is deprecated [-Wdeprecated-declarations] 288 | if ( !this->GetFixedImageMask()->IsInside(fixedPoint) ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/ITK-5.2/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ In file included from /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.h:352, from /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons/itkDiffeomorphicDemonsRegistrationWithMaskFilter.h:22, from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_diff_demons.h:7, from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_diff_demons.cxx:5: /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx: In instantiation of 'itk::ESMDemonsRegistrationWithMaskFunction::PixelType itk::ESMDemonsRegistrationWithMaskFunction::ComputeUpdate(const NeighborhoodType&, void*, const FloatOffsetType&) [with TFixedImage = itk::Image; TMovingImage = itk::Image; TDeformationField = itk::Image, 3>; PixelType = itk::Vector; NeighborhoodType = itk::ConstNeighborhoodIterator, 3>, itk::ZeroFluxNeumannBoundaryCondition, 3>, itk::Image, 3> > >; FloatOffsetType = itk::Vector]': /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:228:1: required from here /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:279:51: warning: 'bool itk::SpatialObject::IsInside(const PointType&, unsigned int, const std::string&) const [with unsigned int VDimension = 3; PointType = itk::Point; std::string = std::__cxx11::basic_string]' is deprecated [-Wdeprecated-declarations] 279 | if ( !this->GetMovingImageMask()->IsInside(mappedPoint) ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/ITK-5.2/itkLightObject.h:21, from /usr/include/ITK-5.2/itkObject.h:31, from /usr/include/ITK-5.2/itkDataObject.h:31, from /usr/include/ITK-5.2/itkProcessObject.h:31, from /usr/include/ITK-5.2/itkImageSource.h:31, from /usr/include/ITK-5.2/itkImageToImageFilter.h:31, from /usr/include/ITK-5.2/itkInPlaceImageFilter.h:31, from /usr/include/ITK-5.2/itkFiniteDifferenceImageFilter.h:21, from /usr/include/ITK-5.2/itkDenseFiniteDifferenceImageFilter.h:21, from /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkPDEDeformableRegistrationWithMaskFilter.h:20, from /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons/itkDiffeomorphicDemonsRegistrationWithMaskFilter.h:21: /usr/include/ITK-5.2/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:288:50: warning: 'bool itk::SpatialObject::IsInside(const PointType&, unsigned int, const std::string&) const [with unsigned int VDimension = 3; PointType = itk::Point; std::string = std::__cxx11::basic_string]' is deprecated [-Wdeprecated-declarations] 288 | if ( !this->GetFixedImageMask()->IsInside(fixedPoint) ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/ITK-5.2/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ [ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_cluster.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_cluster.cxx.o -MF CMakeFiles/plmregister.dir/rbf_cluster.cxx.o.d -o CMakeFiles/plmregister.dir/rbf_cluster.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/rbf_cluster.cxx [ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_gauss.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_gauss.cxx.o -MF CMakeFiles/plmregister.dir/rbf_gauss.cxx.o.d -o CMakeFiles/plmregister.dir/rbf_gauss.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/rbf_gauss.cxx In file included from /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.h:352, from /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces/itkFastSymmetricForcesDemonsRegistrationWithMaskFilter.h:22, from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_fsf_demons.h:7, from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_fsf_demons.cxx:12: /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx: In instantiation of 'itk::ESMDemonsRegistrationWithMaskFunction::PixelType itk::ESMDemonsRegistrationWithMaskFunction::ComputeUpdate(const NeighborhoodType&, void*, const FloatOffsetType&) [with TFixedImage = itk::Image; TMovingImage = itk::Image; TDeformationField = itk::Image, 3>; PixelType = itk::Vector; NeighborhoodType = itk::ConstNeighborhoodIterator, 3>, itk::ZeroFluxNeumannBoundaryCondition, 3>, itk::Image, 3> > >; FloatOffsetType = itk::Vector]': /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:228:1: required from here /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:279:51: warning: 'bool itk::SpatialObject::IsInside(const PointType&, unsigned int, const std::string&) const [with unsigned int VDimension = 3; PointType = itk::Point; std::string = std::__cxx11::basic_string]' is deprecated [-Wdeprecated-declarations] 279 | if ( !this->GetMovingImageMask()->IsInside(mappedPoint) ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/ITK-5.2/itkArray.h:21, from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_fsf_demons.cxx:8: /usr/include/ITK-5.2/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:288:50: warning: 'bool itk::SpatialObject::IsInside(const PointType&, unsigned int, const std::string&) const [with unsigned int VDimension = 3; PointType = itk::Point; std::string = std::__cxx11::basic_string]' is deprecated [-Wdeprecated-declarations] 288 | if ( !this->GetFixedImageMask()->IsInside(fixedPoint) ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/ITK-5.2/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ In file included from /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.h:352, from /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons/itkLogDomainDemonsRegistrationFilterWithMaskExtension.h:5, from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_demons_types.h:14, from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_sym_log_demons.h:8, from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_sym_log_demons.cxx:6: /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx: In instantiation of 'itk::ESMDemonsRegistrationWithMaskFunction::PixelType itk::ESMDemonsRegistrationWithMaskFunction::ComputeUpdate(const NeighborhoodType&, void*, const FloatOffsetType&) [with TFixedImage = itk::Image; TMovingImage = itk::Image; TDeformationField = itk::Image, 3>; PixelType = itk::Vector; NeighborhoodType = itk::ConstNeighborhoodIterator, 3>, itk::ZeroFluxNeumannBoundaryCondition, 3>, itk::Image, 3> > >; FloatOffsetType = itk::Vector]': /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:228:1: required from here /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:279:51: warning: 'bool itk::SpatialObject::IsInside(const PointType&, unsigned int, const std::string&) const [with unsigned int VDimension = 3; PointType = itk::Point; std::string = std::__cxx11::basic_string]' is deprecated [-Wdeprecated-declarations] 279 | if ( !this->GetMovingImageMask()->IsInside(mappedPoint) ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/ITK-5.2/itkLightObject.h:21, from /usr/include/ITK-5.2/itkObject.h:31, from /usr/include/ITK-5.2/itkRegion.h:31, from /usr/include/ITK-5.2/itkImageRegion.h:31, from /usr/include/ITK-5.2/itkImage.h:21, from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_type.h:14, from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_demons_types.h:8: /usr/include/ITK-5.2/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:288:50: warning: 'bool itk::SpatialObject::IsInside(const PointType&, unsigned int, const std::string&) const [with unsigned int VDimension = 3; PointType = itk::Point; std::string = std::__cxx11::basic_string]' is deprecated [-Wdeprecated-declarations] 288 | if ( !this->GetFixedImageMask()->IsInside(fixedPoint) ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/ITK-5.2/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ [ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_wendland.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_wendland.cxx.o -MF CMakeFiles/plmregister.dir/rbf_wendland.cxx.o.d -o CMakeFiles/plmregister.dir/rbf_wendland.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/rbf_wendland.cxx [ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration.cxx.o -MF CMakeFiles/plmregister.dir/registration.cxx.o.d -o CMakeFiles/plmregister.dir/registration.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx [ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_data.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_data.cxx.o -MF CMakeFiles/plmregister.dir/registration_data.cxx.o.d -o CMakeFiles/plmregister.dir/registration_data.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration_data.cxx [ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_parms.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_parms.cxx.o -MF CMakeFiles/plmregister.dir/registration_parms.cxx.o.d -o CMakeFiles/plmregister.dir/registration_parms.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration_parms.cxx [ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_resample.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_resample.cxx.o -MF CMakeFiles/plmregister.dir/registration_resample.cxx.o.d -o CMakeFiles/plmregister.dir/registration_resample.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration_resample.cxx [ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_util.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_util.cxx.o -MF CMakeFiles/plmregister.dir/registration_util.cxx.o.d -o CMakeFiles/plmregister.dir/registration_util.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration_util.cxx [ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/shared_parms.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/shared_parms.cxx.o -MF CMakeFiles/plmregister.dir/shared_parms.cxx.o.d -o CMakeFiles/plmregister.dir/shared_parms.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/shared_parms.cxx [ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o -MF CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o.d -o CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/similarity_metric_type.cxx [ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/stage_parms.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/stage_parms.cxx.o -MF CMakeFiles/plmregister.dir/stage_parms.cxx.o.d -o CMakeFiles/plmregister.dir/stage_parms.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/stage_parms.cxx [ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_grid_search.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/translation_grid_search.cxx.o -MF CMakeFiles/plmregister.dir/translation_grid_search.cxx.o.d -o CMakeFiles/plmregister.dir/translation_grid_search.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/translation_grid_search.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx: In function 'void* registration_main_thread(void*)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx:597:51: warning: 'ThreadInfoStruct' is deprecated: Use WorkUnitInfo, ThreadInfoStruct is deprecated since ITK 5.0 [-Wdeprecated-declarations] 597 | itk::PlatformMultiThreader::ThreadInfoStruct *info | ^~~~ In file included from /usr/include/ITK-5.2/itkPlatformMultiThreader.h:31, from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx:9: /usr/include/ITK-5.2/itkMultiThreaderBase.h:250:93: note: declared here 250 | struct [[deprecated("Use WorkUnitInfo, ThreadInfoStruct is deprecated since ITK 5.0")]] ThreadInfoStruct | ^~~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx:598:56: warning: 'ThreadInfoStruct' is deprecated: Use WorkUnitInfo, ThreadInfoStruct is deprecated since ITK 5.0 [-Wdeprecated-declarations] 598 | = (itk::PlatformMultiThreader::ThreadInfoStruct*) param; | ^ /usr/include/ITK-5.2/itkMultiThreaderBase.h:250:93: note: declared here 250 | struct [[deprecated("Use WorkUnitInfo, ThreadInfoStruct is deprecated since ITK 5.0")]] ThreadInfoStruct | ^~~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx: In member function 'void Registration::start_registration()': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx:623:53: warning: 'itk::ThreadIdType itk::PlatformMultiThreader::SpawnThread(itk::ThreadFunctionType, void*)' is deprecated [-Wdeprecated-declarations] 623 | d_ptr->thread_no = d_ptr->threader->SpawnThread ( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 624 | registration_main_thread, (void*) this); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/ITK-5.2/itkIntTypes.h:21, from /usr/include/ITK-5.2/itkSize.h:21, from /usr/include/ITK-5.2/itkOffset.h:21, from /usr/include/ITK-5.2/itkIndex.h:21, from /usr/include/ITK-5.2/itkImageConstIteratorWithIndex.h:21, from /usr/include/ITK-5.2/itkImageRegionConstIteratorWithIndex.h:21, from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx:7: /usr/include/ITK-5.2/itkPlatformMultiThreader.h:137:3: note: declared here 137 | itkLegacyMacro(ThreadIdType SpawnThread(ThreadFunctionType, void * data)); | ^~~~~~~~~~~~~~ [ 72%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_mi.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/translation_mi.cxx.o -MF CMakeFiles/plmregister.dir/translation_mi.cxx.o.d -o CMakeFiles/plmregister.dir/translation_mi.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/translation_mi.cxx [ 72%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_mse.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmregister_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT 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CMakeFiles/plmregister.dir/histogram.cxx.o CMakeFiles/plmregister.dir/itk_align_center.cxx.o CMakeFiles/plmregister.dir/itk_demons.cxx.o CMakeFiles/plmregister.dir/itk_demons_util.cxx.o CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o CMakeFiles/plmregister.dir/itk_log_demons.cxx.o CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o CMakeFiles/plmregister.dir/itk_optimizer.cxx.o CMakeFiles/plmregister.dir/itk_registration.cxx.o CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o CMakeFiles/plmregister.dir/itk_tps.cxx.o CMakeFiles/plmregister.dir/joint_histogram.cxx.o CMakeFiles/plmregister.dir/landmark_warp.cxx.o CMakeFiles/plmregister.dir/metric_parms.cxx.o CMakeFiles/plmregister.dir/metric_state.cxx.o CMakeFiles/plmregister.dir/process_parms.cxx.o CMakeFiles/plmregister.dir/rbf_cluster.cxx.o CMakeFiles/plmregister.dir/rbf_gauss.cxx.o CMakeFiles/plmregister.dir/rbf_wendland.cxx.o CMakeFiles/plmregister.dir/registration.cxx.o CMakeFiles/plmregister.dir/registration_data.cxx.o CMakeFiles/plmregister.dir/registration_parms.cxx.o CMakeFiles/plmregister.dir/registration_resample.cxx.o CMakeFiles/plmregister.dir/registration_util.cxx.o CMakeFiles/plmregister.dir/shared_parms.cxx.o CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o CMakeFiles/plmregister.dir/stage_parms.cxx.o CMakeFiles/plmregister.dir/translation_grid_search.cxx.o CMakeFiles/plmregister.dir/translation_mi.cxx.o CMakeFiles/plmregister.dir/translation_mse.cxx.o -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../../../liblbfgs.a ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect -lminc2 -lm -lz -lnetcdf -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect -lminc2 -lm -lz -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lm ../../../libnkidecompress.a ../../../libplmsys.so.1.9 -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lpthread -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lfftw3f -lfftw3 ../../../libdevillard.a cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/cmake -E cmake_symlink_library ../../../libplmregister.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmregister.so make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 72%] Built target plmregister make -f src/plastimatch/segment/CMakeFiles/plmsegment.dir/build.make src/plastimatch/segment/CMakeFiles/plmsegment.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment/CMakeFiles/plmsegment.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/segment/CMakeFiles/plmsegment.dir/build.make src/plastimatch/segment/CMakeFiles/plmsegment.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o [ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel.cxx [ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_feature.cxx [ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_parms.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_ransac_est.cxx [ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_task.cxx.o [ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_task.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_task.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_task.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_task.cxx [ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_thumbnailer.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_trainer.cxx [ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs.cxx.o [ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o -MF CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o.d -o CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/dlib_trainer.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs.cxx.o -MF CMakeFiles/plmsegment.dir/mabs.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs.cxx [ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o [ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_parms.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs_atlas_selection.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_parms.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_parms.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_parms.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs_parms.cxx [ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o [ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_stats.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs_seg_weights.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_stats.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_stats.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_stats.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs_stats.cxx [ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_staple.cxx.o [ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_vote.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_staple.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_staple.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_staple.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs_staple.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_vote.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_vote.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_vote.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs_vote.cxx [ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/ml_convert.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/ml_convert.cxx.o -MF CMakeFiles/plmsegment.dir/ml_convert.cxx.o.d -o CMakeFiles/plmsegment.dir/ml_convert.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/ml_convert.cxx [ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/segment_body.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dplmsegment_EXPORTS -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/segment_body.cxx.o -MF CMakeFiles/plmsegment.dir/segment_body.cxx.o.d -o CMakeFiles/plmsegment.dir/segment_body.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/segment_body.cxx In file included from /build/plastimatch-1.9.4+dfsg.1/libs/ransac/RANSAC.h:194, from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_ransac_est.cxx:13: /build/plastimatch-1.9.4+dfsg.1/libs/ransac/RANSAC.txx: In member function 'void itk::RANSAC::SetNumberOfThreads(unsigned int)': /build/plastimatch-1.9.4+dfsg.1/libs/ransac/RANSAC.txx:26:84: warning: 'static itk::ThreadIdType itk::PlatformMultiThreader::GetGlobalDefaultNumberOfThreads()' is deprecated [-Wdeprecated-declarations] 26 | numberOfThreads>itk::PlatformMultiThreader::GetGlobalDefaultNumberOfThreads() ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/ITK-5.2/itkLightObject.h:21, from /usr/include/ITK-5.2/itkObject.h:31, from /build/plastimatch-1.9.4+dfsg.1/libs/ransac/ParametersEstimator.h:5, from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_ransac_est.h:8, from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_ransac_est.cxx:12: /usr/include/ITK-5.2/itkPlatformMultiThreader.h:99:3: note: declared here 99 | itkLegacyMacro(static ThreadIdType GetGlobalDefaultNumberOfThreads()) | ^~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/libs/ransac/RANSAC.txx: In static member function 'static void* itk::RANSAC::RANSACThreadCallback(void*)': /build/plastimatch-1.9.4+dfsg.1/libs/ransac/RANSAC.txx:160:58: warning: 'ThreadInfoStruct' is deprecated: Use WorkUnitInfo, ThreadInfoStruct is deprecated since ITK 5.0 [-Wdeprecated-declarations] 160 | typedef itk::PlatformMultiThreader::ThreadInfoStruct ThreadInfoType; | ^~~~~~~~~~~~~~ In file included from /usr/include/ITK-5.2/itkPlatformMultiThreader.h:31, from /build/plastimatch-1.9.4+dfsg.1/libs/ransac/RANSAC.h:13: /usr/include/ITK-5.2/itkMultiThreaderBase.h:250:93: note: declared here 250 | struct [[deprecated("Use WorkUnitInfo, ThreadInfoStruct is deprecated since ITK 5.0")]] ThreadInfoStruct | ^~~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/libs/ransac/RANSAC.txx: In instantiation of 'double itk::RANSAC::Compute(std::vector&, double) [with T = itk::Point; S = double]': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_ransac_est.cxx:248:54: required from here /build/plastimatch-1.9.4+dfsg.1/libs/ransac/RANSAC.txx:114:33: warning: 'virtual void itk::MultiThreaderBase::SetNumberOfThreads(itk::ThreadIdType)' is deprecated [-Wdeprecated-declarations] 114 | threader->SetNumberOfThreads( this->numberOfThreads ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/ITK-5.2/itkMultiThreaderBase.h:224:3: note: declared here 224 | itkLegacyMacro(virtual void SetNumberOfThreads(ThreadIdType numberOfThreads)) | ^~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/libs/ransac/RANSAC.txx:114:33: warning: 'virtual void itk::MultiThreaderBase::SetNumberOfThreads(itk::ThreadIdType)' is deprecated [-Wdeprecated-declarations] 114 | threader->SetNumberOfThreads( this->numberOfThreads ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/ITK-5.2/itkMultiThreaderBase.h:224:3: note: declared here 224 | itkLegacyMacro(virtual void SetNumberOfThreads(ThreadIdType numberOfThreads)) | ^~~~~~~~~~~~~~ [ 77%] Linking CXX shared library ../../../libplmsegment.so cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmsegment.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libplmsegment.so.1.9 -o ../../../libplmsegment.so.1.9 CMakeFiles/plmsegment.dir/autolabel.cxx.o CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o CMakeFiles/plmsegment.dir/autolabel_task.cxx.o CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o CMakeFiles/plmsegment.dir/mabs.cxx.o CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o CMakeFiles/plmsegment.dir/mabs_parms.cxx.o CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o CMakeFiles/plmsegment.dir/mabs_stats.cxx.o CMakeFiles/plmsegment.dir/mabs_staple.cxx.o CMakeFiles/plmsegment.dir/mabs_vote.cxx.o CMakeFiles/plmsegment.dir/ml_convert.cxx.o CMakeFiles/plmsegment.dir/segment_body.cxx.o -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../../../libplmregister.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 -lfftw3f -lfftw3 ../../../libdevillard.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -lm ../../../libnkidecompress.a -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lpthread -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread ../../../liblbfgs.a -Wl,-Bdynamic cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/cmake -E cmake_symlink_library ../../../libplmsegment.so.1.9 ../../../libplmsegment.so.1.9 ../../../libplmsegment.so make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 77%] Built target plmsegment make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/depend make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/depend make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/compute_distance.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/DependInfo.cmake --color= make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/depend make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/DependInfo.cmake --color= make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/depend make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/depend make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_info.dir/DependInfo.cmake --color= make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/DependInfo.cmake --color= make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/demons.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/check_grad.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/DependInfo.cmake --color= make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dlib_train.dir/DependInfo.cmake --color= make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/build make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/DependInfo.cmake --color= make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/build [ 77%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_add.cxx.o [ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/dicom_info.dir/dicom_info.cxx.o [ 78%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/dicom_info.dir/dicom_info.cxx.o -MF CMakeFiles/dicom_info.dir/dicom_info.cxx.o.d -o CMakeFiles/dicom_info.dir/dicom_info.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/dicom_info.cxx make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_add.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_add.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_add.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_add.cxx make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/build [ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/compute_distance.cxx.o [ 78%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/compute_distance.dir/compute_distance.cxx.o -MF CMakeFiles/compute_distance.dir/compute_distance.cxx.o.d -o CMakeFiles/compute_distance.dir/compute_distance.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/compute_distance.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_adjust.cxx make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_autolabel_train.cxx make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -MF CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o.d -o CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/merge_vector_fields.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -MF CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o.d -o CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/landmark_diff_main.cxx [ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -MF CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o.d -o CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/shuffle_mha_main.cxx [ 79%] Building CXX object src/plastimatch/standalone/CMakeFiles/wed.dir/wed_main.cxx.o [ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/check_grad.dir/check_grad.cxx.o make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/wed.dir/wed_main.cxx.o -MF CMakeFiles/wed.dir/wed_main.cxx.o.d -o CMakeFiles/wed.dir/wed_main.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/wed_main.cxx [ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_main.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -MF CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o.d -o CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/xvi_archive.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/check_grad.dir/check_grad.cxx.o -MF CMakeFiles/check_grad.dir/check_grad.cxx.o.d -o CMakeFiles/check_grad.dir/check_grad.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/check_grad.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/demons.dir/demons_main.cxx.o -MF CMakeFiles/demons.dir/demons_main.cxx.o.d -o CMakeFiles/demons.dir/demons_main.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/demons_main.cxx [ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/dlib_train.dir/dlib_train.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/dlib_train.dir/dlib_train.cxx.o -MF CMakeFiles/dlib_train.dir/dlib_train.cxx.o.d -o CMakeFiles/dlib_train.dir/dlib_train.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/dlib_train.cxx [ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o [ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -MF CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o.d -o CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/hnd_to_pfm.cxx cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -MF CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o.d -o CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/bragg_curve_main.cxx [ 81%] Linking CXX executable ../../../landmark_diff cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/landmark_diff.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -o ../../../landmark_diff -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 [ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -MF CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o.d -o CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/bragg_curve_opts.cxx [ 81%] Linking CXX executable ../../../hnd_to_pfm cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/hnd_to_pfm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -o ../../../hnd_to_pfm -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 [ 81%] Linking CXX executable ../../../bragg_curve cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/bragg_curve.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -o ../../../bragg_curve -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 81%] Built target hnd_to_pfm make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/depend [ 81%] Built target landmark_diff make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/depend make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plastimatch-1.9.4+dfsg.1 /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/build make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 81%] Built target bragg_curve [ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -MF CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o.d -o CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/dicom_uid_main.cxx [ 82%] Building CXX object src/plastimatch/standalone/CMakeFiles/sobp.dir/sobp_main.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/sobp.dir/sobp_main.cxx.o -MF CMakeFiles/sobp.dir/sobp_main.cxx.o.d -o CMakeFiles/sobp.dir/sobp_main.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/sobp_main.cxx [ 82%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_autolabel.cxx [ 82%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_opts.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/demons.dir/demons_opts.cxx.o -MF CMakeFiles/demons.dir/demons_opts.cxx.o.d -o CMakeFiles/demons.dir/demons_opts.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/demons_opts.cxx [ 83%] Linking CXX executable ../../../demons cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/demons.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/demons.dir/demons_main.cxx.o CMakeFiles/demons.dir/demons_opts.cxx.o -o ../../../demons -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 [ 83%] Linking CXX executable ../../../wed cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/wed.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/wed.dir/wed_main.cxx.o -o ../../../wed -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 83%] Built target demons [ 83%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_bbox.cxx make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 83%] Built target wed [ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_benchmark.cxx [ 84%] Linking CXX executable ../../../dicom_uid cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_uid.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -o ../../../dicom_uid -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 [ 84%] Linking CXX executable ../../../shuffle_mha cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/shuffle_mha.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -o ../../../shuffle_mha -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 [ 84%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/closest_point.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/compute_distance.dir/closest_point.cxx.o -MF CMakeFiles/compute_distance.dir/closest_point.cxx.o.d -o CMakeFiles/compute_distance.dir/closest_point.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/closest_point.cxx [ 84%] Linking CXX executable ../../../sobp cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/sobp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/sobp.dir/sobp_main.cxx.o -o ../../../sobp -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 84%] Built target sobp [ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_boundary.cxx make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 84%] Built target dicom_uid [ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_compare.cxx make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 84%] Built target shuffle_mha [ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_compose.cxx [ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_crop.cxx [ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_dice.cxx [ 86%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/read_obj.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/compute_distance.dir/read_obj.cxx.o -MF CMakeFiles/compute_distance.dir/read_obj.cxx.o.d -o CMakeFiles/compute_distance.dir/read_obj.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/read_obj.cxx [ 86%] Linking CXX executable ../../../check_grad cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/check_grad.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/check_grad.dir/check_grad.cxx.o -o ../../../check_grad 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/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 [ 86%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_diff.cxx [ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_dmap.cxx make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 87%] Built target check_grad [ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_dose.cxx [ 87%] Linking CXX executable ../../../compute_distance cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_distance.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/compute_distance.dir/compute_distance.cxx.o CMakeFiles/compute_distance.dir/closest_point.cxx.o CMakeFiles/compute_distance.dir/read_obj.cxx.o -o ../../../compute_distance -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 87%] Built target compute_distance [ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_drr.cxx [ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_dvh.cxx [ 88%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_fdk.cxx [ 88%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_filter.cxx [ 89%] Linking CXX executable ../../../dicom_info cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_info.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/dicom_info.dir/dicom_info.cxx.o -o ../../../dicom_info -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 [ 89%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_gamma.cxx [ 89%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_header.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_header.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_header.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_header.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_header.cxx [ 90%] Linking CXX executable ../../../xvi_archive cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/xvi_archive.dir/link.txt --verbose=1 [ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_intersect.cxx /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -o ../../../xvi_archive -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../libinih.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 91%] Built target dicom_info [ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_jacobian.cxx [ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_lm_warp.cxx make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 91%] Built target xvi_archive [ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_mabs.cxx [ 92%] Linking CXX executable ../../../merge_vfs cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/merge_vfs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -o ../../../merge_vfs -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 [ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_mask.cxx make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 93%] Built target merge_vfs [ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_maximum.cxx [ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_ml_convert.cxx [ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_multiply.cxx [ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_probe.cxx [ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_register.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_register.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_register.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_register.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_register.cxx [ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_resample.cxx [ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_scale.cxx [ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_segment.cxx [ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_sift.cxx [ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_stats.cxx [ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_synth.cxx [ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_synth_vf.cxx [ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_threshold.cxx [ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_thumbnail.cxx [ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_union.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_union.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_union.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_union.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_union.cxx [ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_warp.cxx [ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_warp_dij.cxx [ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_warp_pointset.cxx [ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_wed.cxx [ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx: In function 'void do_command_xio_dvh(int, char**)': /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:46:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fgets(buf, 200, fp); //XiO Dose Volume Histogram | ~~~~~^~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:49:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 49 | fgets(patientid, 200, fp); // patient ID, abcde1234 | ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:50:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 50 | fgets(buf, 200, fp); // plan | ~~~~~^~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:51:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 51 | fgets(structurename, 200, fp); // structure name | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:52:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 52 | fgets(buf, 200, fp); // N.NN mm resolution | ~~~~~^~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:54:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 54 | fgets(buf, 200, fp); // number of bins | ~~~~~^~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:59:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 59 | fgets(buf, 200, fp); // date | ~~~~~^~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:60:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 60 | fgets(buf, 200, fp); // table header: min bin dose (cGy), bin volume (cc) | ~~~~~^~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:78:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 78 | fgets(buf, 200, fp); | ~~~~~^~~~~~~~~~~~~~ /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:72:37: warning: '%s' directive writing up to 254 bytes into a region of size 253 [-Wformat-overflow=] 72 | sprintf(outfilename, "%s/%s-%s.txt",output_dir, patientid, structurename); | ^~ ~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:906, from /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:5: In function 'int sprintf(char*, const char*, ...)', inlined from 'void do_command_xio_dvh(int, char**)' at /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:72:9: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 7 or more bytes (assuming 261) into a destination of size 255 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xf_convert.cxx [ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xf_invert.cxx [ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o -MF CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o.d -o CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/plastimatch_main.cxx [ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_IO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/plastimatch-1.9.4+dfsg.1/libs -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.2 -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o -MF CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o.d -o CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o -c /build/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/plastimatch_startup.cxx [ 99%] Linking CXX executable ../../../plastimatch cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/plastimatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat 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/usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../clp/libplmclp.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 99%] Built target plastimatch [100%] Linking CXX executable ../../../dlib_train cd /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dlib_train.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/dlib_train.dir/dlib_train.cxx.o -o ../../../dlib_train -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/libITKTestKernel-5.2.so.1 /usr/lib/libITKColormap-5.2.so.1 /usr/lib/libITKConvolution-5.2.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/libITKDICOMParser-5.2.so.1 /usr/lib/libITKDenoising-5.2.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/libITKIOBruker-5.2.so.1 /usr/lib/libITKIOCSV-5.2.so.1 /usr/lib/libITKIOHDF5-5.2.so.1 /usr/lib/libITKIOJPEG2000-5.2.so.1 /usr/lib/libITKIOLSM-5.2.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/libITKIOMINC-5.2.so.1 /usr/lib/libITKIOMRC-5.2.so.1 /usr/lib/libITKRegistrationMethodsv4-5.2.so.1 /usr/lib/libITKReview-5.2.so.1 /usr/lib/libITKVideoIO-5.2.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/libITKIOMeshBYU-5.2.so.1 /usr/lib/libITKIOMeshFreeSurfer-5.2.so.1 /usr/lib/libITKIOMeshGifti-5.2.so.1 /usr/lib/libITKgiftiio-5.2.so.1 -lexpat /usr/lib/libITKIOMeshOBJ-5.2.so.1 /usr/lib/libITKIOMeshOFF-5.2.so.1 /usr/lib/libITKIOMeshVTK-5.2.so.1 /usr/lib/libITKIOMeshBase-5.2.so.1 /usr/lib/libITKOptimizersv4-5.2.so.1 /usr/lib/libitklbfgs-5.2.so.1 /usr/lib/libITKIOBMP-5.2.so.1 /usr/lib/libITKIOGDCM-5.2.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.21 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.21 /usr/lib/libITKIOGIPL-5.2.so.1 /usr/lib/libITKIOJPEG-5.2.so.1 /usr/lib/libITKQuadEdgeMesh-5.2.so.1 /usr/lib/libITKIOMeta-5.2.so.1 /usr/lib/libITKMetaIO-5.2.so.1 /usr/lib/libITKIONIFTI-5.2.so.1 /usr/lib/libITKniftiio-5.2.so.1 /usr/lib/libITKznz-5.2.so.1 /usr/lib/libITKIONRRD-5.2.so.1 /usr/lib/libITKNrrdIO-5.2.so.1 /usr/lib/libITKIOPNG-5.2.so.1 /usr/lib/libITKIOTIFF-5.2.so.1 /usr/lib/libitktiff-5.2.so.1 /usr/lib/libITKIOVTK-5.2.so.1 /usr/lib/libITKLabelMap-5.2.so.1 /usr/lib/libITKFastMarching-5.2.so.1 /usr/lib/libITKPolynomials-5.2.so.1 /usr/lib/libITKBiasCorrection-5.2.so.1 /usr/lib/libITKDeformableMesh-5.2.so.1 /usr/lib/libITKDiffusionTensorImage-5.2.so.1 /usr/lib/libITKPDEDeformableRegistration-5.2.so.1 /usr/lib/libITKImageFeature-5.2.so.1 /usr/lib/libITKOptimizers-5.2.so.1 /usr/lib/libITKFFT-5.2.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/libITKIOBioRad-5.2.so.1 /usr/lib/libITKIOGE-5.2.so.1 /usr/lib/libITKIOSiemens-5.2.so.1 /usr/lib/libITKIOIPL-5.2.so.1 /usr/lib/libitkopenjpeg-5.2.so.1 /usr/lib/libITKIOSpatialObjects-5.2.so.1 /usr/lib/libITKIOXML-5.2.so.1 /usr/lib/libITKIOStimulate-5.2.so.1 /usr/lib/libITKIOTransformHDF5-5.2.so.1 /usr/lib/libITKIOTransformInsightLegacy-5.2.so.1 /usr/lib/libITKIOTransformMatlab-5.2.so.1 /usr/lib/libITKIOTransformBase-5.2.so.1 /usr/lib/libITKTransformFactory-5.2.so.1 /usr/lib/libITKKLMRegionGrowing-5.2.so.1 /usr/lib/libITKMarkovRandomFieldsClassifiers-5.2.so.1 /usr/lib/libITKQuadEdgeMeshFiltering-5.2.so.1 /usr/lib/libITKRegionGrowing-5.2.so.1 /usr/lib/libITKVTK-5.2.so.1 /usr/lib/libITKWatersheds-5.2.so.1 /usr/lib/libITKMathematicalMorphology-5.2.so.1 /usr/lib/libITKStatistics-5.2.so.1 /usr/lib/libitkNetlibSlatec-5.2.so.1 /usr/lib/libITKSpatialObjects-5.2.so.1 /usr/lib/libITKMesh-5.2.so.1 /usr/lib/libITKTransform-5.2.so.1 /usr/lib/libITKPath-5.2.so.1 /usr/lib/libITKSmoothing-5.2.so.1 /usr/lib/libITKIOImageBase-5.2.so.1 /usr/lib/libITKVideoCore-5.2.so.1 /usr/lib/libITKCommon-5.2.so.1 /usr/lib/libitkdouble-conversion-5.2.so.1 /usr/lib/libitksys-5.2.so.1 -lm /usr/lib/libITKVNLInstantiation-5.2.so.1 /usr/lib/libitkvnl_algo-5.2.so.1 /usr/lib/libitkvnl-5.2.so.1 /usr/lib/libitkv3p_netlib-5.2.so.1 /usr/lib/libitkvcl-5.2.so.1 -lm -ldl -lpthread -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [100%] Built target dlib_train make[2]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/plastimatch-1.9.4+dfsg.1' dh_auto_test cd obj-x86_64-linux-gnu && make -j15 test ARGS\+=--verbose ARGS\+=-j15 make[2]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j15 UpdateCTestConfiguration from :/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/DartConfiguration.tcl Add coverage exclude regular expressions. UpdateCTestConfiguration from :/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu Constructing a list of tests Ignore test: demons-cuda-a Ignore test: demons-cuda-a-check Ignore test: drr-d Ignore test: drr-d-stats Ignore test: drr-d-check Ignore test: drr-cuda Ignore test: drr-cuda-stats Ignore test: drr-cuda-check Ignore test: drr-opencl Ignore test: drr-opencl-stats Ignore test: drr-opencl-check Ignore test: fdk-cpu-b Ignore test: fdk-cpu-b-stats Ignore test: fdk-cpu-b-check Ignore test: fdk-cpu-c Ignore test: fdk-cpu-c-stats Ignore test: fdk-cpu-c-check Ignore test: fdk-cuda-a Ignore test: fdk-cuda-a-stats Ignore test: fdk-cuda-a-check Ignore test: fdk-opencl-a Ignore test: fdk-opencl-a-stats Ignore test: fdk-opencl-a-check Ignore test: fdk-tutorial-a Ignore test: fdk-tutorial-b Ignore test: fdk-tutorial-b-stats-1 Ignore test: fdk-tutorial-b-check-1 Ignore test: fdk-tutorial-c Ignore test: fdk-tutorial-c-stats-1 Ignore test: fdk-tutorial-c-check-1 Ignore test: plm-convert-rtog-corvus-a Ignore test: plm-convert-dicom-aw-a Ignore test: plm-convert-dicom-aw-a-stats Ignore test: plm-convert-dicom-aw-a-check Ignore test: plm-convert-dicom-aw-b Ignore test: plm-convert-dicom-corvus-a Ignore test: plm-convert-dicom-pinnacle-a Ignore test: plm-convert-dicom-xio-a Ignore test: plm-convert-dicom-xio-a-stats Ignore test: plm-convert-dicom-xio-a-check Ignore test: plm-convert-dicom-xio-b Ignore test: plm-convert-dicom-xio-b-stats Ignore test: plm-convert-dicom-xio-b-check Ignore test: plm-convert-dicom-xio-c Ignore test: plm-convert-dicom-xio-c-stats Ignore test: plm-convert-dicom-xio-c-check Ignore test: plm-convert-dicom-xio-d Ignore test: plm-convert-dicom-xio-d-stats Ignore test: plm-convert-dicom-xio-d-check Ignore test: plm-convert-dicom-xio-e Ignore test: plm-convert-dicom-xio-f Ignore test: plm-convert-dicom-xio-f-stats Ignore test: plm-convert-dicom-xio-f-check Ignore test: plm-convert-dicom-xio-g Ignore test: plm-warp-dicom-xio-a Ignore test: plm-warp-dicom-xio-a-stats-1 Ignore test: plm-warp-dicom-xio-a-check-1 Ignore test: plm-warp-dicom-xio-a-stats-2 Ignore test: plm-warp-dicom-xio-a-check-2 Ignore test: plm-convert-dicom-irregular-a Ignore test: plm-convert-dicom-33-a Ignore test: plm-convert-dicom-33-a-stats-1 Ignore test: plm-convert-dicom-33-a-stats-2 Ignore test: plm-convert-dicom-33-a-check-1 Ignore test: plm-convert-dicom-33-a-check-2 Ignore test: plm-convert-xio-a Ignore test: plm-convert-xio-a-stats Ignore test: plm-convert-xio-a-check Ignore test: plm-convert-xio-b Ignore test: plm-convert-xio-b-stats Ignore test: plm-convert-xio-b-check Ignore test: plm-warp-xio-a Ignore test: plm-warp-xio-a-stats-1 Ignore test: plm-warp-xio-a-check-1 Ignore test: plm-warp-xio-a-stats-2 Ignore test: plm-warp-xio-a-check-2 Ignore test: plm-warp-xio-a-stats-3 Ignore test: plm-warp-xio-a-check-3 Ignore test: plm-warp-xio-a-stats-4 Ignore test: plm-warp-xio-a-check-4 Ignore test: plm-warp-xio-a-check-5 Ignore test: plm-warp-xio-a-check-6 Ignore test: plm-reg-itk-rigid-b Ignore test: plm-reg-itk-rigid-b-stats-1 Ignore test: plm-reg-itk-rigid-b-check-1 Ignore test: plm-bsp-cuda Ignore test: plm-bsp-cuda-stats Ignore test: plm-bsp-cuda-check Ignore test: bragg-curve Ignore test: bragg-curve-check Ignore test: proton-dose-7a Ignore test: proton-dose-8d-check Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 10 Start 10: gauss-1 10: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;0 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 10: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 10: Test timeout computed to be: 1500 test 11 Start 11: gauss-2 11: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 11: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 11: Test timeout computed to be: 1500 test 12 Start 12: gauss-3 12: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-3" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;-1000;--gauss-center;10 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 12: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 12: Test timeout computed to be: 1500 test 14 Start 14: gauss-5 14: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-5" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;20 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 14: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 14: Test timeout computed to be: 1500 test 29 Start 29: rect-1 29: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--filenames-without-uids;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output-type;float;--output-dose-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--output-ss-list;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss-list.txt;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--pattern;rect;--dim;38 38 38;--background;0;--foreground;-1000" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 29: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 29: Test timeout computed to be: 1500 test 1 Start 1: black-1 1: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=black-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha;--output-type;float;--pattern;rect;--origin;-25 -25 -25;--dim;40 40 40;--volume-size;50 50 50;--background;-1000;--foreground;-1000" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 1: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 1: Test timeout computed to be: 1500 test 2 Start 2: cyl-1 2: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=cyl-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--output-type;uchar;--pattern;cylinder;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--radius;10" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 2: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 2: Test timeout computed to be: 1500 test 3 Start 3: cyl-mask-2 3: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=cyl-mask-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd;--output-type;uchar;--pattern;rect;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--rect-size;-20 20 -20 20 -30 45" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 3: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 3: Test timeout computed to be: 1500 test 5 Start 5: cyl-mask-3 5: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=cyl-mask-3" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd;--output-type;uchar;--pattern;rect;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--rect-size;-20 20 -20 20 -45 40" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 5: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 5: Test timeout computed to be: 1500 test 7 Start 7: donut-1 7: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=donut-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1.mha;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha;--output-ss-list;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt;--output-type;float;--pattern;donut;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--donut-radius;10 10 10;--background;-1000;--foreground;0;--filenames-without-uids;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-prefix;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-prefix/" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 7: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 7: Test timeout computed to be: 1500 test 8 Start 8: donut-2 8: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=donut-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--output-type;uchar;--pattern;donut;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--donut-radius;10 10 10;--background;0;--foreground;1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 8: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 8: Test timeout computed to be: 1500 test 9 Start 9: gabor-01 9: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gabor-01" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--pattern;gabor;--origin;-5 -5 -5;--dim;11 11 11;--spacing;1 1 1;--gabor-k-fib;0 1;--gauss-center;0 0 0;--gauss-std;3 3 3;--background;0;--foreground;1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 9: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 9: Test timeout computed to be: 1500 test 13 Start 13: gauss-4 13: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-4" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output-type;float;--pattern;gauss;--origin;+25 +25 -25;--dim;38 38 38;--spacing;-1.31579 -1.31579 2;--background;-1000;--foreground;0;--gauss-center;0 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 13: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 13: Test timeout computed to be: 1500 test 15 Start 15: gauss-6 15: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-6" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-6.mha;--output-type;float;--pattern;gauss;--origin;-15 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 15: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 15: Test timeout computed to be: 1500 test 17 Start 17: gauss-double-1 17: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-double-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha;--output-type;double;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;0 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 17: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 17: Test timeout computed to be: 1500 10: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 10: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;0 0 0;--gauss-std;10 10 10 10: EXPECTED_ERRNO is 11: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 11: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;10 10 10 11: EXPECTED_ERRNO is 12: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 12: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;-1000;--gauss-center;10 0 0;--gauss-std;10 10 10 12: EXPECTED_ERRNO is 14: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 14: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;20 0 0;--gauss-std;10 10 10 14: EXPECTED_ERRNO is 29: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 29: PARMS is synth;--filenames-without-uids;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output-type;float;--output-dose-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--output-ss-list;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss-list.txt;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--pattern;rect;--dim;38 38 38;--background;0;--foreground;-1000 29: EXPECTED_ERRNO is 1: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 1: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha;--output-type;float;--pattern;rect;--origin;-25 -25 -25;--dim;40 40 40;--volume-size;50 50 50;--background;-1000;--foreground;-1000 1: EXPECTED_ERRNO is 2: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 2: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--output-type;uchar;--pattern;cylinder;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--radius;10 2: EXPECTED_ERRNO is 3: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 3: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd;--output-type;uchar;--pattern;rect;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--rect-size;-20 20 -20 20 -30 45 3: EXPECTED_ERRNO is 5: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 5: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd;--output-type;uchar;--pattern;rect;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--rect-size;-20 20 -20 20 -45 40 5: EXPECTED_ERRNO is 7: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 7: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1.mha;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha;--output-ss-list;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt;--output-type;float;--pattern;donut;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--donut-radius;10 10 10;--background;-1000;--foreground;0;--filenames-without-uids;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-prefix;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-prefix/ 7: EXPECTED_ERRNO is 8: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 8: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--output-type;uchar;--pattern;donut;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--donut-radius;10 10 10;--background;0;--foreground;1 8: EXPECTED_ERRNO is 9: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 9: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--pattern;gabor;--origin;-5 -5 -5;--dim;11 11 11;--spacing;1 1 1;--gabor-k-fib;0 1;--gauss-center;0 0 0;--gauss-std;3 3 3;--background;0;--foreground;1 9: EXPECTED_ERRNO is 13: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 13: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output-type;float;--pattern;gauss;--origin;+25 +25 -25;--dim;38 38 38;--spacing;-1.31579 -1.31579 2;--background;-1000;--foreground;0;--gauss-center;0 0 0;--gauss-std;10 10 10 13: EXPECTED_ERRNO is 15: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 15: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-6.mha;--output-type;float;--pattern;gauss;--origin;-15 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;10 10 10 15: EXPECTED_ERRNO is 17: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 17: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha;--output-type;double;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;0 0 0;--gauss-std;10 10 10 17: EXPECTED_ERRNO is 2: RETVAL: 0 2: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd 2: 2: STDERR: 2: Not an error 1: RETVAL: 0 1: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha 1: 1: STDERR: 1: Not an error 15: RETVAL: 0 15: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-6.mha 15: 15: STDERR: 15: Not an error 3: RETVAL: 0 3: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd 3: 3: STDERR: 1/578 Test #1: black-1 ............................... Passed 0.78 sec test 18 Start 18: gauss-double-2 18: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-double-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha;--output-type;double;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;10 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 18: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 18: Test timeout computed to be: 1500 3: Not an error 10: RETVAL: 0 10: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 10: 10: STDERR: 10: Not an error 12: RETVAL: 0 12: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha 12: 12: STDERR: 12: Not an error 14: RETVAL: 0 14: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha 14: 14: STDERR: 14: Not an error 17: RETVAL: 0 17: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha 17: 17: STDERR: 17: Not an error 5: RETVAL: 0 5: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd 5: 5: STDERR: 5: Not an error 11: RETVAL: 0 11: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 11: 11: STDERR: 11: Not an error 2/578 Test #10: gauss-1 ............................... Passed 0.87 sec test 19 Start 19: gauss-ushort-1 19: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-ushort-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-type;ushort;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;0 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 19: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 19: Test timeout computed to be: 1500 3/578 Test #11: gauss-2 ............................... Passed 0.87 sec test 20 Start 20: gauss-ushort-2 20: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-ushort-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-2.mha;--output-type;ushort;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;10 0 0;--gauss-std;10 10 10" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 20: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 20: Test timeout computed to be: 1500 4/578 Test #12: gauss-3 ............................... Passed 0.88 sec test 21 Start 21: lung-1 21: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=lung-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--filenames-without-uids;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha;--output-prefix;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-dicom;--pattern;lung;--lung-tumor-pos;0" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 21: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 21: Test timeout computed to be: 1500 5/578 Test #14: gauss-5 ............................... Passed 0.89 sec test 27 Start 27: ptv-1 27: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=ptv-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha;--pattern;rect;--dim;60 60 60;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-150 -150 -150;--spacing;5 5 5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 27: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 27: Test timeout computed to be: 1500 6/578 Test #2: cyl-1 ................................. Passed 0.87 sec test 28 Start 28: ptv-2 28: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=ptv-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-2.mha;--pattern;rect;--dim;40 40 40;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-100 -100 -100;--spacing;5 5 5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 28: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 28: Test timeout computed to be: 1500 7/578 Test #3: cyl-mask-2 ............................ Passed 0.87 sec test 30 Start 30: rect-2 30: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha;--output-type;float;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-30 70 -50 50 -50 50;--patient-name;RECT^SYNTH;--patient-id;RECT-SYNTH;--series-description;rect-2;--filenames-without-uids" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 30: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 30: Test timeout computed to be: 1500 8/578 Test #5: cyl-mask-3 ............................ Passed 0.87 sec test 31 Start 31: rect-2s 31: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-2s" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--spacing;13.158 13.158 13.158;--rect-size; 200 200 200;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2s.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 31: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 31: Test timeout computed to be: 1500 9/578 Test #15: gauss-6 ............................... Passed 0.80 sec test 32 Start 32: rect-3 32: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-3" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-type;float;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--patient-name;RECT^SYNTH;--patient-id;RECT-SYNTH;--series-description;rect-3;--filenames-without-uids" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 32: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 32: Test timeout computed to be: 1500 10/578 Test #17: gauss-double-1 ........................ Passed 0.79 sec test 33 Start 33: rect-4 33: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-4" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 33: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 33: Test timeout computed to be: 1500 8: RETVAL: 0 8: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha 8: 8: STDERR: 8: Not an error 11/578 Test #8: donut-2 ............................... Passed 0.88 sec test 34 Start 34: rect-5 34: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-5" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;-300 -150 -250;--direction-cosines;rotated-1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 34: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 34: Test timeout computed to be: 1500 18: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 18: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha;--output-type;double;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;10 0 0;--gauss-std;10 10 10 18: EXPECTED_ERRNO is 9: RETVAL: 0 9: STDOUT: Gabor: 0 1 -> (0.000000 -1.570796) -> (-0.000000 -0.000000 -1.000000) 9: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha 9: 9: STDERR: 9: Not an error 12/578 Test #9: gabor-01 .............................. Passed 0.90 sec test 40 Start 40: rect-10-roi-1 40: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-10-roi-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-60 60 -60 60 -60 60" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 40: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 40: Test timeout computed to be: 1500 19: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 19: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-type;ushort;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;0 0 0;--gauss-std;10 10 10 19: EXPECTED_ERRNO is 20: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 20: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-2.mha;--output-type;ushort;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;10 0 0;--gauss-std;10 10 10 20: EXPECTED_ERRNO is 21: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 21: PARMS is synth;--filenames-without-uids;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha;--output-prefix;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-dicom;--pattern;lung;--lung-tumor-pos;0 21: EXPECTED_ERRNO is 27: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 27: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha;--pattern;rect;--dim;60 60 60;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-150 -150 -150;--spacing;5 5 5 27: EXPECTED_ERRNO is 30: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 30: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha;--output-type;float;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-30 70 -50 50 -50 50;--patient-name;RECT^SYNTH;--patient-id;RECT-SYNTH;--series-description;rect-2;--filenames-without-uids 30: EXPECTED_ERRNO is 13: RETVAL: 0 13: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha 13: 13: STDERR: 13: Not an error 13/578 Test #13: gauss-4 ............................... Passed 0.90 sec test 43 Start 43: rect-11-roi 43: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-11-roi" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 80 -50 80 -50 80" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 43: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 43: Test timeout computed to be: 1500 28: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 28: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-2.mha;--pattern;rect;--dim;40 40 40;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-100 -100 -100;--spacing;5 5 5 28: EXPECTED_ERRNO is 31: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 31: PARMS is synth;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--spacing;13.158 13.158 13.158;--rect-size; 200 200 200;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2s.mha 31: EXPECTED_ERRNO is 32: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 32: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-type;float;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--patient-name;RECT^SYNTH;--patient-id;RECT-SYNTH;--series-description;rect-3;--filenames-without-uids 32: EXPECTED_ERRNO is 33: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 33: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50 33: EXPECTED_ERRNO is 34: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 34: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;-300 -150 -250;--direction-cosines;rotated-1 34: EXPECTED_ERRNO is 43: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 43: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 80 -50 80 -50 80 43: EXPECTED_ERRNO is 40: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 40: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-60 60 -60 60 -60 60 40: EXPECTED_ERRNO is 18: RETVAL: 0 18: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha 18: 18: STDERR: 18: Not an error 28: RETVAL: 0 28: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-2.mha 28: 28: STDERR: 28: Not an error 14/578 Test #18: gauss-double-2 ........................ Passed 0.66 sec test 44 Start 44: rect-12 44: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-12" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;10;--rect-size;-4.5 4.5 -4.5 4.5 -4.5 4.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 44: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 44: Test timeout computed to be: 1500 15/578 Test #28: ptv-2 ................................. Passed 0.58 sec test 45 Start 45: rect-13 45: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-13" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-13.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;11;--rect-size;-4.5 4.5 -4.5 4.5 -4.5 4.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 45: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 45: Test timeout computed to be: 1500 33: RETVAL: 0 33: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha 33: 33: STDERR: 33: Not an error 44: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 44: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;10;--rect-size;-4.5 4.5 -4.5 4.5 -4.5 4.5 44: EXPECTED_ERRNO is 16/578 Test #33: rect-4 ................................ Passed 0.56 sec test 46 Start 46: rect-14 46: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-14" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;10;--rect-size;-2.5 6.5 -4.5 4.5 -4.5 4.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 46: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 46: Test timeout computed to be: 1500 40: RETVAL: 0 40: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha 40: 40: STDERR: 40: Not an error 45: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 45: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-13.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;11;--rect-size;-4.5 4.5 -4.5 4.5 -4.5 4.5 45: EXPECTED_ERRNO is 17/578 Test #40: rect-10-roi-1 ......................... Passed 0.54 sec test 47 Start 47: rect-15 47: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-15" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 47: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 47: Test timeout computed to be: 1500 47: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 47: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1 47: EXPECTED_ERRNO is 46: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 46: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;10;--rect-size;-2.5 6.5 -4.5 4.5 -4.5 4.5 46: EXPECTED_ERRNO is 19: RETVAL: 0 19: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha 19: 19: STDERR: 19: Not an error 18/578 Test #19: gauss-ushort-1 ........................ Passed 0.82 sec test 48 Start 48: rect-16 48: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-16" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-30 70 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 48: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 48: Test timeout computed to be: 1500 20: RETVAL: 0 20: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-2.mha 20: 20: STDERR: 20: Not an error 19/578 Test #20: gauss-ushort-2 ........................ Passed 0.82 sec test 49 Start 49: rect-17 49: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-17" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha;--pattern;rect;--dim;60 60 60;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;5 5 5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 49: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 49: Test timeout computed to be: 1500 27: RETVAL: 0 27: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha 27: 27: STDERR: 27: Not an error 31: RETVAL: 0 31: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2s.mha 31: 31: STDERR: 31: Not an error 48: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 48: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-30 70 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1 48: EXPECTED_ERRNO is 20/578 Test #31: rect-2s ............................... Passed 0.77 sec test 57 Start 57: rectarr-03-a 57: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-03-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output-type;float;--pattern;rect;--dim;30 50 30;--background;0;--foreground;70;--rect-size;-5 5 -15 -5 -5 5;--origin;-14.5 -24.5 -14.5;--spacing;1 1 1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 57: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 57: Test timeout computed to be: 1500 21/578 Test #27: ptv-1 ................................. Passed 0.83 sec test 62 Start 62: sphere-1 62: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-type;uchar;--pattern;sphere;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;255;--center;0 0 0;--radius;10 10 10" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 62: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 62: Test timeout computed to be: 1500 49: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 49: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha;--pattern;rect;--dim;60 60 60;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;5 5 5 49: EXPECTED_ERRNO is 34: RETVAL: 0 34: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha 34: 34: STDERR: 34: Not an error 22/578 Test #34: rect-5 ................................ Passed 0.76 sec test 63 Start 63: sphere-2 63: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;50 50 50" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 63: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 63: Test timeout computed to be: 1500 57: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 57: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output-type;float;--pattern;rect;--dim;30 50 30;--background;0;--foreground;70;--rect-size;-5 5 -15 -5 -5 5;--origin;-14.5 -24.5 -14.5;--spacing;1 1 1 57: EXPECTED_ERRNO is 29: RETVAL: 0 29: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha 29: Converting from ITK_UCHAR to ITK_UCHAR_VEC 29: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha 29: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha 29: save_ss_img: save_ss_list 29: Done. 29: Doing extraction 29: Keyholizing structure 0. 29: Write: DoseGridScaling = 0.000000 29: 29: STDERR: 29: Not an error 23/578 Test #29: rect-1 ................................ Passed 1.77 sec test 64 Start 64: sphere-3 64: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-3" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 64: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 64: Test timeout computed to be: 1500 43: RETVAL: 0 43: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha 43: 43: STDERR: 43: Not an error 24/578 Test #43: rect-11-roi ........................... Passed 0.75 sec test 66 Start 66: sphere-5 66: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-5" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha;--output-type;uchar;--pattern;sphere;--origin;-19 -19 -19;--dim;20 20 20;--spacing;2 2 2;--background;0;--foreground;1;--center;0 0 0;--radius;21" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 66: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 66: Test timeout computed to be: 1500 62: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 62: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-type;uchar;--pattern;sphere;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;255;--center;0 0 0;--radius;10 10 10 62: EXPECTED_ERRNO is 7: RETVAL: 0 7: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1.mha 7: Converting from ITK_UCHAR to ITK_UCHAR_VEC 7: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha 7: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-prefix//Foreground.mha 7: save_ss_img: save_ss_list 7: Done. 7: Doing extraction 7: Keyholizing structure 0. 7: Write: DoseGridScaling = 0.000000 7: 7: STDERR: 7: Not an error 25/578 Test #7: donut-1 ............................... Passed 1.72 sec test 72 Start 72: vf-zero 72: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-zero" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--xf-zero;--dim;38 38 38" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 72: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 72: Test timeout computed to be: 1500 63: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 63: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;50 50 50 63: EXPECTED_ERRNO is 64: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 64: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50 64: EXPECTED_ERRNO is 66: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 66: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha;--output-type;uchar;--pattern;sphere;--origin;-19 -19 -19;--dim;20 20 20;--spacing;2 2 2;--background;0;--foreground;1;--center;0 0 0;--radius;21 66: EXPECTED_ERRNO is 44: RETVAL: 0 44: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha 44: 44: STDERR: 44: Not an error 72: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 72: PARMS is synth-vf;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--xf-zero;--dim;38 38 38 72: EXPECTED_ERRNO is 26/578 Test #44: rect-12 ............................... Passed 0.43 sec test 73 Start 73: vf-trans-1 73: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-trans-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--xf-trans;10 0 0;--dim;38 38 38" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 73: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 73: Test timeout computed to be: 1500 73: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 73: PARMS is synth-vf;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--xf-trans;10 0 0;--dim;38 38 38 73: EXPECTED_ERRNO is 47: RETVAL: 0 47: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha 47: 47: STDERR: 47: Not an error 27/578 Test #47: rect-15 ............................... Passed 0.43 sec test 74 Start 74: vf-trans-2 74: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-trans-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;--xf-trans;0 10 0;--dim;38 38 38" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 74: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 74: Test timeout computed to be: 1500 74: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 74: PARMS is synth-vf;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;--xf-trans;0 10 0;--dim;38 38 38 74: EXPECTED_ERRNO is 45: RETVAL: 0 45: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-13.mha 45: 45: STDERR: 45: Not an error 28/578 Test #45: rect-13 ............................... Passed 0.57 sec test 99 Start 99: drr-a 99: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=drr;-a;20;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a/out_;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 99: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 99: Test timeout computed to be: 1500 99: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 99: PARMS is drr;-a;20;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a/out_;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 99: EXPECTED_ERRNO is 46: RETVAL: 0 46: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha 46: 46: STDERR: 46: Not an error 29/578 Test #46: rect-14 ............................... Passed 0.63 sec test 187 Start 187: plm-convert-dicom-a 187: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom/rtss.dcm;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha;--output-ss-list;plm-convert-dicom-a-ss.txt;--output-cxt;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-prefix;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-prefix" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 187: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 187: Test timeout computed to be: 1500 63: RETVAL: 0 63: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha 63: 63: STDERR: 63: Not an error 30/578 Test #63: sphere-2 .............................. Passed 0.45 sec test 285 Start 285: plm-reg-itk-translation 285: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-translation" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 285: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 285: Test timeout computed to be: 1500 187: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 187: PARMS is convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom/rtss.dcm;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha;--output-ss-list;plm-convert-dicom-a-ss.txt;--output-cxt;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-prefix;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-prefix 187: EXPECTED_ERRNO is 62: RETVAL: 0 62: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha 62: 62: STDERR: 62: Not an error 31/578 Test #62: sphere-1 .............................. Passed 0.57 sec test 317 Start 317: plm-bsp-mse-h 317: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-h" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 317: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 317: Test timeout computed to be: 1500 285: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 285: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation.txt 285: EXPECTED_ERRNO is 57: RETVAL: 0 57: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha 57: 57: STDERR: 57: Not an error 32/578 Test #57: rectarr-03-a .......................... Passed 0.60 sec test 340 Start 340: plm-bsp-mi-c-2 340: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-c-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 340: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 340: Test timeout computed to be: 1500 66: RETVAL: 0 66: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha 66: 66: STDERR: 66: Not an error 33/578 Test #66: sphere-5 .............................. Passed 0.54 sec test 443 Start 443: plm-reg-compose 443: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-compose" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-reg-compose.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 443: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 443: Test timeout computed to be: 1500 48: RETVAL: 0 48: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha 48: 48: STDERR: 48: Not an error 34/578 Test #48: rect-16 ............................... Passed 0.70 sec test 530 Start 530: plm-xf-convert-d 530: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-xf-convert.txt;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-type;itk_bspline" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 530: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 530: Test timeout computed to be: 1500 317: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 317: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h.txt 317: EXPECTED_ERRNO is 340: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 340: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2.txt 340: EXPECTED_ERRNO is 73: RETVAL: 0 73: STDOUT: Setting header 73: Origin = -243.4211 -243.4211 -243.4211 73: Size = 38 38 38 73: Spacing = 13.1579 13.1579 13.1579 73: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 73: Header was set 73: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha 73: 73: STDERR: 73: Not an error 443: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 443: PARMS is /build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-reg-compose.txt 443: EXPECTED_ERRNO is 35/578 Test #73: vf-trans-1 ............................ Passed 0.49 sec test 4 Start 4: cyl-2 4: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=cyl-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=mask;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 4: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 4: Test timeout computed to be: 1500 530: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 530: PARMS is xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-xf-convert.txt;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-type;itk_bspline 530: EXPECTED_ERRNO is 32: RETVAL: 0 32: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha 32: Doing extraction 32: Keyholizing structure 0. 32: Write: DoseGridScaling = 0.000000 32: 32: STDERR: 32: Not an error 36/578 Test #32: rect-3 ................................ Passed 1.46 sec test 6 Start 6: cyl-3 6: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=cyl-3" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=mask;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 6: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 6: Test timeout computed to be: 1500 4: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 4: PARMS is mask;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd 4: EXPECTED_ERRNO is 64: RETVAL: 0 64: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha 64: 64: STDERR: 49: RETVAL: 0 49: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha 49: 49: STDERR: 49: Not an error 37/578 Test #49: rect-17 ............................... Passed 0.85 sec test 22 Start 22: lung-2 22: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=lung-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--filenames-without-uids;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2-dicom;--pattern;lung;--lung-tumor-pos;-5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 22: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 22: Test timeout computed to be: 1500 64: Not an error 38/578 Test #64: sphere-3 .............................. Passed 0.77 sec test 37 Start 37: rect-8 37: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-8" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-30 70 -50 50 -50 50" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 37: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 37: Test timeout computed to be: 1500 72: RETVAL: 0 72: STDOUT: Setting header 72: Origin = -243.4211 -243.4211 -243.4211 72: Size = 38 38 38 72: Spacing = 13.1579 13.1579 13.1579 72: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 72: Header was set 72: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha 72: 72: STDERR: 72: Not an error 30: RETVAL: 0 30: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha 30: Doing extraction 30: Keyholizing structure 0. 30: Write: DoseGridScaling = 0.000000 30: 30: STDERR: 30: Not an error 39/578 Test #72: vf-zero ............................... Passed 0.77 sec test 38 Start 38: rect-9 38: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-9" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha;--output-type;uchar;--pattern;rect;--dim;47 47 47;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 38: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 38: Test timeout computed to be: 1500 6: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 6: PARMS is mask;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd 6: EXPECTED_ERRNO is 40/578 Test #30: rect-2 ................................ Passed 1.67 sec test 52 Start 52: rectarr-01-a 52: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-01-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output-type;float;--pattern;rect;--dim;30 50 30;--background;-1000;--foreground;0;--rect-size;-5 5 -15 -5 -5 5;--origin;-14.5 -24.5 -14.5;--spacing;1 1 1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 52: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 52: Test timeout computed to be: 1500 74: RETVAL: 0 74: STDOUT: Setting header 74: Origin = -243.4211 -243.4211 -243.4211 74: Size = 38 38 38 74: Spacing = 13.1579 13.1579 13.1579 74: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 74: Header was set 74: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha 74: 74: STDERR: 74: Not an error 22: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 22: PARMS is synth;--filenames-without-uids;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2-dicom;--pattern;lung;--lung-tumor-pos;-5 22: EXPECTED_ERRNO is 37: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 37: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-30 70 -50 50 -50 50 37: EXPECTED_ERRNO is 41/578 Test #74: vf-trans-2 ............................ Passed 0.64 sec test 58 Start 58: rectarr-03 58: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-03" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-5 5 5 15 -5 5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 58: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 58: Test timeout computed to be: 1500 38: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 38: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha;--output-type;uchar;--pattern;rect;--dim;47 47 47;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50 38: EXPECTED_ERRNO is 52: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 52: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output-type;float;--pattern;rect;--dim;30 50 30;--background;-1000;--foreground;0;--rect-size;-5 5 -15 -5 -5 5;--origin;-14.5 -24.5 -14.5;--spacing;1 1 1 52: EXPECTED_ERRNO is 58: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 58: PARMS is synth;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-5 5 5 15 -5 5 58: EXPECTED_ERRNO is 285: RETVAL: 0 285: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 285: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 285: Launching registration worker thread 285: Inside registration worker thread 285: Doing registration stage 285: [1] xf_in->m_type = 0, xf_out->m_type = 0 285: Fixed image for this stage: 285: Dim = 19 19 19 285: Origin = -24.3421 -24.3421 -24.3421 285: Spacing = 2.63158 2.63158 2.63158 285: Direction Cosines = 285: 1 0 0 285: 0 1 0 285: 0 0 1 285: Moving image for this stage: 285: Dim = 19 19 19 285: Origin = -24.3421 -24.3421 -24.3421 285: Spacing = 2.63158 2.63158 2.63158 285: Direction Cosines = 285: 1 0 0 285: 0 1 0 285: 0 0 1 285: Initial Parameters = [0, 0, 0] 285: Starting ITK registration 285: StartEvent: [0, 0, 0] 285: MSE [ 0, 0,10.00] 18756.235 [9.999997615028182, -0.004883617032987221, -0.004883617032987353] 285: :: [0, 0, 0] 285: * 285: MSE [ 1, 1, 5.00] 1.116 [5.318441699151527, 1.2366948554205817, 1.2366948554205934] -18755.12 285: :: [9.999997615028182, -0.004883617032987221, -0.004883617032987353] 285: * 285: MSE [ 2, 2, 2.50] 5544.602 [7.61065194008583, 0.5310844064631239, 0.5310844064631283] 5543.49 285: MSE [ 3, 3, 2.50] 1453.699 [9.961460585442484, -0.07045474975050192, -0.07045474975050381] -4090.90 285: MSE [ 4, 4, 1.25] 4.252 [10.130622373667528, 0.8052975809356612, 0.8052975809356663] -1449.45 285: EndEvent: [10.130622373667528, 0.8052975809356612, 0.8052975809356663] 285: RegularStepGradientDescentOptimizer: Maximum number of iterations (5) exceeded. 285: ITK registration complete 285: [2] xf_out->m_type = 1, xf_in->m_type = 0 285: ** Registration worker thread finished. 285: Writing transformation ... 285: Warping... 285: plm_warp_itk: xform_to_itk_vf 285: plm_warp_itk: convert_to_itk 285: plm_warp_itk: warping... 285: Saving image... 285: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-img.mha 285: Saving vf... 285: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-vf.mha 285: Load: 0.170254 285: Run: 0.152234 285: Save: 0.0345221 285: Total: 0.35701 285: Finished! 285: 285: STDERR: 285: Not an error 187: RETVAL: 0 187: STDOUT: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542141.1683112258.256389RTSTRUCT 187: Found DCM_ReferencedFrameOfReferenceSequence! 187: Found DCM_RTReferencedStudySequence! 187: Trying to load rt structure set. 187: Adding structure (1), Foreground 187: Structure 1 has color 255\0\0 187: Setting PIH from rasterization heuristicsPIH is: 187: Origin = -55.2632 -55.2632 -46.0526 187: Size = 512 512 7 187: Spacing = 0.2159 0.2159 13.1579 187: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 187: Rt_study_warp: Convert ss_img to cxt. 187: Rt_study_warp: Apply dicom_dir. 187: Rt_study_warp: Set geometry from PIH. 187: Rt_study_warp: Set rasterization geometry. 187: rast_dim = 512 512 7 187: rast_offset = -55.2632 -55.2632 -46.0526 187: rast_spacing = 0.215872 0.215872 13.1579 187: Rt_study_warp: warp and save ss. 187: Warp_and_save_ss: seg->rasterize 187: Rasterizing... 187: Converting... 187: Finished rasterization. 187: Warp_and_save_ss: save_ss_img 187: save_ss_img: save_ss_image 187: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha 187: save_ss_img: save_ss_list 187: Done. 187: save_ss_img: save_prefix 187: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-prefix/Foreground.mha 187: save_ss_img: save_cxt 187: Finished! 187: 187: STDERR: 187: Not an error 42/578 Test #187: plm-convert-dicom-a ................... Passed 0.97 sec test 59 Start 59: rectarr-04 59: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-04" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-10 0 5 15 -5 5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 59: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 59: Test timeout computed to be: 1500 43/578 Test #285: plm-reg-itk-translation ............... Passed 0.96 sec test 67 Start 67: sphere-6 67: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-6" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha;--output-type;uchar;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 67: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 67: Test timeout computed to be: 1500 317: RETVAL: 0 317: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 317: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 317: Launching registration worker thread 317: Inside registration worker thread 317: Doing registration stage 317: [1] xf_in->m_type = 0, xf_out->m_type = 0 317: RESAMPLE 1 1: (2 2 2), (2 2 2) 317: RESAMPLE 1 1: (2 2 2), (2 2 2) 317: volume_calc_grad complete. 317: bspline_xform_initialize 317: rdims = (2,2,2) 317: vox_per_rgn = (11,11,11) 317: cdims = (5 5 5) 317: Algorithm flavor = h 317: Threading = 0 317: >> Checking JH allocation 317: BSPLINE PARMS 317: max_its = 5 317: max_feval = 5 317: BSPLINE XFORM HEADER 317: vox_per_rgn = 11 11 11 317: roi_offset = 0 0 0 317: roi_dim = 19 19 19 317: img_dc = 1 0 0 0 1 0 0 0 1 317: BST METRICS 317: MET 110100 MSE 1.000000 317: Setting nmax, mmax = 375 21 317: >>> START 317: This problem is unconstrained. 317: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.012 s ] 317: CMIN 0.00 CAVG 0.00 CMAX 0.00 317: LSD 0.00 317: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.004 s ] 317: CMIN -0.07 CAVG 0.01 CMAX 0.68 317: LSD 1.00 317: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.004 s ] 317: CMIN -0.35 CAVG 0.05 CMAX 3.40 317: LSD 5.00 317: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.003 s ] 317: CMIN -1.48 CAVG 0.20 CMAX 14.26 317: LSD 21.00 317: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.009 s ] 317: CMIN -1.74 CAVG 0.44 CMAX 32.50 317: LSD 27.95 317: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.008 s ] 317: CMIN -1.73 CAVG 0.34 CMAX 23.99 317: LSD 13.11 317: [2] xf_out->m_type = 9, xf_in->m_type = 0 317: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 317: bspline_xform_initialize 317: rdims = (2,2,2) 317: vox_per_rgn = (22,22,22) 317: cdims = (5 5 5) 317: ** Registration worker thread finished. 317: Writing transformation ... 317: Warping... 317: Running: plm_warp_native 317: Converting input image... 317: Converting xform... 317: bspline_xform_initialize 317: rdims = (2,2,2) 317: vox_per_rgn = (22,22,22) 317: cdims = (5 5 5) 317: Creating output vf... 317: Creating output volume... 317: Running native warper... 317: bspline_warp complete. 317: Back convert to original type... 317: > Convert vf to itk 317: > Conversion complete. 317: plm_warp_native is complete. 317: Saving image... 317: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-img.mha 317: Saving vf... 317: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-vf.mha 317: Load: 0.109186 317: Run: 0.0903759 317: Save: 0.101567 317: Total: 0.301129 317: Finished! 317: 317: STDERR: 317: Not an error 44/578 Test #317: plm-bsp-mse-h ......................... Passed 0.90 sec test 68 Start 68: sphere-7 68: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-7" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--output-type;uchar;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 68: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 68: Test timeout computed to be: 1500 67: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 67: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha;--output-type;uchar;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50 67: EXPECTED_ERRNO is 68: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 68: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--output-type;uchar;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50 68: EXPECTED_ERRNO is 59: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 59: PARMS is synth;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-10 0 5 15 -5 5 59: EXPECTED_ERRNO is 52: RETVAL: 0 52: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha 52: 52: STDERR: 52: Not an error 45/578 Test #52: rectarr-01-a .......................... Passed 0.72 sec test 75 Start 75: vf-radial-1 75: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-radial-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha;--xf-radial;--radial-center;0 0 0;--radial-mag;10;--dim;38 38 38" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 75: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 75: Test timeout computed to be: 1500 37: RETVAL: 0 37: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha 37: 37: STDERR: 37: Not an error 46/578 Test #37: rect-8 ................................ Passed 0.79 sec test 91 Start 91: plm-diff-a 91: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-diff-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=diff;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 91: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 91: Test timeout computed to be: 1500 99: RETVAL: 0 99: STDOUT: Rendering DRR 0 99: I/O time: 0.000483 sec 99: Rendering DRR 1 99: I/O time: 0.000486 sec 99: Rendering DRR 2 99: I/O time: 0.000450 sec 99: Rendering DRR 3 99: I/O time: 0.000452 sec 99: Rendering DRR 4 99: I/O time: 0.000473 sec 99: Rendering DRR 5 99: I/O time: 0.000430 sec 99: Rendering DRR 6 99: I/O time: 0.000383 sec 99: Rendering DRR 7 99: I/O time: 0.000474 sec 99: Rendering DRR 8 99: I/O time: 0.000434 sec 99: Rendering DRR 9 99: I/O time: 0.000485 sec 99: Rendering DRR 10 99: I/O time: 0.000513 sec 99: Rendering DRR 11 99: I/O time: 0.000414 sec 99: Rendering DRR 12 99: I/O time: 0.000475 sec 99: Rendering DRR 13 99: I/O time: 0.000428 sec 99: Rendering DRR 14 99: I/O time: 0.000427 sec 99: Rendering DRR 15 99: I/O time: 0.000387 sec 99: Rendering DRR 16 99: I/O time: 0.000514 sec 99: Rendering DRR 17 99: I/O time: 0.000416 sec 99: Rendering DRR 18 99: I/O time: 0.000413 sec 99: Rendering DRR 19 99: I/O time: 0.000585 sec 99: Total time: 0.552502 secs 99: 99: STDERR: 99: Not an error 75: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 75: PARMS is synth-vf;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha;--xf-radial;--radial-center;0 0 0;--radial-mag;10;--dim;38 38 38 75: EXPECTED_ERRNO is 47/578 Test #99: drr-a ................................. Passed 1.33 sec test 94 Start 94: plm-diff-b 94: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-diff-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=diff;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 94: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 94: Test timeout computed to be: 1500 530: RETVAL: 0 530: STDOUT: bspline_xform_initialize 530: rdims = (2,2,2) 530: vox_per_rgn = (11,11,11) 530: cdims = (5 5 5) 530: about to xform_convert 530: did xform_convert 530: 530: STDERR: 530: Not an error 48/578 Test #530: plm-xf-convert-d ...................... Passed 1.07 sec test 102 Start 102: drr-b 102: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=drr;-a;20;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-b/out_;-i;uniform;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 102: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 102: Test timeout computed to be: 1500 91: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 91: PARMS is diff;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha 91: EXPECTED_ERRNO is 4: RETVAL: 0 4: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd 4: Finished! 4: 4: STDERR: 4: Not an error 6: RETVAL: 0 6: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd 6: Finished! 6: 6: STDERR: 6: Not an error 49/578 Test #6: cyl-3 ................................. Passed 1.02 sec test 105 Start 105: drr-c 105: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=drr;-a;20;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-c/out_;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 105: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 105: Test timeout computed to be: 1500 50/578 Test #4: cyl-2 ................................. Passed 1.07 sec test 108 Start 108: fdk-cpu-a 108: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=fdk;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-f;none;-a;0 19;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 108: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 108: Test timeout computed to be: 1500 38: RETVAL: 0 38: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha 38: 38: STDERR: 38: Not an error 51/578 Test #38: rect-9 ................................ Passed 0.90 sec test 111 Start 111: fdk-cpu-d 111: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=fdk;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-X;0;-f;none;-a;0 19;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 111: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 111: Test timeout computed to be: 1500 94: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 94: PARMS is diff;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha 94: EXPECTED_ERRNO is 102: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 102: PARMS is drr;-a;20;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-b/out_;-i;uniform;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 102: EXPECTED_ERRNO is 108: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 108: PARMS is fdk;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-f;none;-a;0 19;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha 108: EXPECTED_ERRNO is 105: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 105: PARMS is drr;-a;20;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-c/out_;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha 105: EXPECTED_ERRNO is 111: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 111: PARMS is fdk;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-X;0;-f;none;-a;0 19;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha 111: EXPECTED_ERRNO is 58: RETVAL: 0 58: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha 58: 58: STDERR: 58: Not an error 52/578 Test #58: rectarr-03 ............................ Passed 1.01 sec test 114 Start 114: landmark-warp-a 114: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;tps;-f;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha;-V;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 114: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 114: Test timeout computed to be: 1500 114: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 114: PARMS is lm-warp;-a;tps;-f;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha;-V;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha 114: EXPECTED_ERRNO is 67: RETVAL: 0 67: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha 67: 67: STDERR: 67: Not an error 53/578 Test #67: sphere-6 .............................. Passed 0.57 sec test 119 Start 119: landmark-warp-b 119: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;wendland;-f;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha;-V;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha;-r;90;-d;0;-Y;0.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 119: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 119: Test timeout computed to be: 1500 443: RETVAL: 0 443: STDOUT: Loading fixed image [0]: gauss-2.mha 443: Loading moving image [0]: gauss-5.mha 443: Launching registration worker thread 443: Inside registration worker thread 443: Doing registration stage 443: [1] xf_in->m_type = 0, xf_out->m_type = 0 443: RESAMPLE 1 1: (2 2 2), (2 2 2) 443: RESAMPLE 1 1: (2 2 2), (2 2 2) 443: volume_calc_grad complete. 443: bspline_xform_initialize 443: rdims = (2,2,2) 443: vox_per_rgn = (11,11,11) 443: cdims = (5 5 5) 443: Algorithm flavor = g 443: Threading = 0 443: >> Checking JH allocation 443: BSPLINE PARMS 443: max_its = 10 443: max_feval = 10 443: BSPLINE XFORM HEADER 443: vox_per_rgn = 11 11 11 443: roi_offset = 0 0 0 443: roi_dim = 19 19 19 443: img_dc = 1 0 0 0 1 0 0 0 1 443: BST METRICS 443: MET 110100 MSE 1.000000 443: Setting nmax, mmax = 375 21 443: >>> START 443: This problem is unconstrained. 443: [ 0, 0] MSE 13049.518 NV 6859 GM -1702.194 GN 529 [ 0.061 s ] 443: CMIN 0.00 CAVG 0.00 CMAX 0.00 443: LSD 0.00 443: [ 0, 1] MSE 12469.547 NV 6859 GM -1637.952 GN 509 [ 0.020 s ] 443: CMIN -0.05 CAVG 0.01 CMAX 0.74 443: LSD 1.00 443: [ 0, 2] MSE 10357.764 NV 6859 GM -1646.825 GN 515 [ 0.043 s ] 443: CMIN -0.26 CAVG 0.04 CMAX 3.71 443: LSD 5.00 443: [ 0, 3] MSE 1944.747 NV 6295 GM -809.887 GN 247 [ 0.027 s ] 443: CMIN -1.11 CAVG 0.18 CMAX 15.56 443: LSD 21.00 443: [ 1, 4] MSE 891.268 NV 5678 GM 504.524 GN 187 [ 0.019 s ] 443: CMIN -1.50 CAVG 0.35 CMAX 29.17 443: LSD 19.59 443: [ 2, 5] MSE 117.931 NV 5939 GM -11.010 GN 12.8 [ 0.033 s ] 443: CMIN -1.27 CAVG 0.29 CMAX 23.54 443: LSD 8.47 443: [ 3, 6] MSE 110.217 NV 5931 GM -24.361 GN 9.26 [ 0.032 s ] 443: CMIN -1.44 CAVG 0.29 CMAX 23.60 443: LSD 0.55 443: [ 4, 7] MSE 101.235 NV 5928 GM -14.715 GN 10.7 [ 0.028 s ] 443: CMIN -1.88 CAVG 0.29 CMAX 23.41 443: LSD 1.34 443: [ 5, 8] MSE 89.096 NV 5930 GM -23.801 GN 14.1 [ 0.017 s ] 443: CMIN -2.79 CAVG 0.31 CMAX 22.44 443: LSD 2.74 443: [ 6, 9] MSE 76.413 NV 5947 GM 60.289 GN 16.9 [ 0.031 s ] 443: CMIN -4.30 CAVG 0.34 CMAX 20.28 443: LSD 5.25 443: [ 7, 10] MSE 68.670 NV 5976 GM -50.552 GN 14.5 [ 0.036 s ] 443: CMIN -6.00 CAVG 0.36 CMAX 17.22 443: LSD 5.96 443: [2] xf_out->m_type = 9, xf_in->m_type = 0 443: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 443: bspline_xform_initialize 443: rdims = (2,2,2) 443: vox_per_rgn = (22,22,22) 443: cdims = (5 5 5) 443: ** Registration worker thread finished. 443: Writing transformation ... 443: Warping... 443: Running: plm_warp_native 443: Converting input image... 443: Converting xform... 443: bspline_xform_initialize 443: rdims = (2,2,2) 443: vox_per_rgn = (22,22,22) 443: cdims = (5 5 5) 443: Creating output vf... 443: Creating output volume... 443: Running native warper... 443: bspline_warp complete. 443: Back convert to original type... 443: > Convert vf to itk 443: > Conversion complete. 443: plm_warp_native is complete. 443: Saving image... 443: Trying to write image to plm-reg-compose-img.mha 443: Saving vf... 443: Trying to write image to plm-reg-compose-vf.mha 443: Load: 0.194541 443: Run: 0.386526 443: Save: 0.0949051 443: Total: 0.675972 443: Finished! 443: 443: STDERR: 443: Not an error 54/578 Test #443: plm-reg-compose ....................... Passed 1.43 sec test 124 Start 124: landmark-warp-c 124: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;gauss;-f;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha;-V;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;-r;74;-d;0;-Y;1.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 124: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 124: Test timeout computed to be: 1500 119: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 119: PARMS is lm-warp;-a;wendland;-f;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha;-V;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha;-r;90;-d;0;-Y;0.0 119: EXPECTED_ERRNO is 68: RETVAL: 0 68: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha 68: 68: STDERR: 68: Not an error 124: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 124: PARMS is lm-warp;-a;gauss;-f;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha;-V;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;-r;74;-d;0;-Y;1.0 124: EXPECTED_ERRNO is 55/578 Test #68: sphere-7 .............................. Passed 0.63 sec test 130 Start 130: plm-add-a 130: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=add;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 130: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 130: Test timeout computed to be: 1500 130: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 130: PARMS is add;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha 130: EXPECTED_ERRNO is 75: RETVAL: 0 75: STDOUT: Setting header 75: Origin = -243.4211 -243.4211 -243.4211 75: Size = 38 38 38 75: Spacing = 13.1579 13.1579 13.1579 75: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 75: Header was set 75: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha 75: 75: STDERR: 75: Not an error 56/578 Test #75: vf-radial-1 ........................... Passed 0.63 sec test 133 Start 133: plm-add-b 133: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=average;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 133: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 133: Test timeout computed to be: 1500 133: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 133: PARMS is average;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha 133: EXPECTED_ERRNO is 59: RETVAL: 0 59: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha 59: 59: STDERR: 59: Not an error 57/578 Test #59: rectarr-04 ............................ Passed 0.96 sec test 136 Start 136: plm-add-vf-a 136: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-vf-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=add;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 136: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 136: Test timeout computed to be: 1500 136: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 136: PARMS is add;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha 136: EXPECTED_ERRNO is 91: RETVAL: 0 91: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha 91: 91: STDERR: 91: Not an error 58/578 Test #91: plm-diff-a ............................ Passed 0.86 sec test 139 Start 139: plm-add-vf-b 139: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-vf-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=average;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 139: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 139: Test timeout computed to be: 1500 139: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 139: PARMS is average;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha 139: EXPECTED_ERRNO is 94: RETVAL: 0 94: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha 94: 94: STDERR: 94: Not an error 59/578 Test #94: plm-diff-b ............................ Passed 0.94 sec test 142 Start 142: plm-adjust-a 142: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd;--pw-linear;0,100" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 142: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 142: Test timeout computed to be: 1500 142: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 142: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd;--pw-linear;0,100 142: EXPECTED_ERRNO is 124: RETVAL: 0 124: STDOUT: 74.000000 124: 74.000000 124: 74.000000 124: 74.000000 124: 74.000000 124: 74.000000 124: 74.000000 124: 74.000000 124: coeff 0 -14.4830 0.0226 -0.0000 124: coeff 1 -6.4591 0.0989 0.0000 124: coeff 2 -5.6641 0.8767 0.0000 124: coeff 3 -15.5832 -0.6135 0.0000 124: coeff 4 -15.3769 -0.1107 0.0000 124: coeff 5 -6.4169 1.0717 -0.0000 124: coeff 6 -6.5309 -0.1220 0.0000 124: coeff 7 -16.0092 -0.1893 -0.0000 124: Creating output vf 124: Rendering vector field 124: Gauss RBF, updating the vector field 124: Converting volume to float 124: Creating output vol 124: Warping image 124: Direction cosines: vin = 1.000000 0.000000 0.000000 ... 124: vf = 1.000000 0.000000 0.000000 ... 124: spac: vin = 13.157895 13.157895 13.157895 ... 124: vf = 13.157895 13.157895 13.157895 ... 124: proj: vin = 0.076000 -0.000000 0.000000 ... 124: vf = 0.076000 -0.000000 0.000000 ... 124: step: vin = 13.157895 0.000000 0.000000 ... 124: vf = 13.157895 0.000000 0.000000 ... 124: Freeing coeff 124: Done with rbf_gauss_warp 124: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha 124: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha 124: 124: STDERR: 124: Not an error 60/578 Test #124: landmark-warp-c ....................... Passed 0.84 sec test 145 Start 145: plm-adjust-b 145: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd;--pw-linear;-inf,1,0,100,inf,1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 145: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 145: Test timeout computed to be: 1500 114: RETVAL: 0 114: STDOUT: Hello world 114: Gonna convert pointsets 114: Pointset: 114: rect-2-0 -26.271700 -52.162899 46.052799 114: rect-2-1 65.870201 -52.543598 46.053001 114: rect-2-2 65.870201 52.543900 46.053001 114: rect-2-3 -25.510201 53.686199 46.053001 114: rect-2-4 -25.891001 -52.162899 -46.052502 114: rect-2-5 66.631699 -53.305099 -46.053001 114: rect-2-6 65.870201 53.305401 -46.053001 114: rect-2-7 -25.129499 53.686199 -46.053001 114: Conversion complete. 114: -26.2717 -52.1629 46.0528 114: 65.8702 -52.5436 46.053 114: 65.8702 52.5439 46.053 114: -25.5102 53.6862 46.053 114: -25.891 -52.1629 -46.0525 114: 66.6317 -53.3051 -46.053 114: 65.8702 53.3054 -46.053 114: -25.1295 53.6862 -46.053 114: Setting landmarks to TPS 114: Computing matrix 114: Setting xform 114: Converting to VF 114: Warping... 114: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha 114: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha 114: 114: STDERR: 114: Not an error 61/578 Test #114: landmark-warp-a ....................... Passed 1.04 sec test 148 Start 148: plm-adjust-c 148: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd;--linear;100,1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 148: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 148: Test timeout computed to be: 1500 145: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 145: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd;--pw-linear;-inf,1,0,100,inf,1 145: EXPECTED_ERRNO is 136: RETVAL: 0 136: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd 136: 136: STDERR: 136: Not an error 62/578 Test #136: plm-add-vf-a .......................... Passed 0.65 sec test 151 Start 151: plm-adjust-d 151: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd;--pw-linear;-inf,0,-800,-800,-600,-600,inf,0" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 151: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 151: Test timeout computed to be: 1500 151: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 151: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd;--pw-linear;-inf,0,-800,-800,-600,-600,inf,0 151: EXPECTED_ERRNO is 139: RETVAL: 0 139: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd 139: 139: STDERR: 139: Not an error 63/578 Test #139: plm-add-vf-b .......................... Passed 0.66 sec test 154 Start 154: plm-adjust-e 154: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-e" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd;--linear;1000,2.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 154: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 154: Test timeout computed to be: 1500 148: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 148: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd;--linear;100,1 148: EXPECTED_ERRNO is 154: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 154: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd;--linear;1000,2.5 154: EXPECTED_ERRNO is 130: RETVAL: 0 130: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd 130: 130: STDERR: 130: Not an error 64/578 Test #130: plm-add-a ............................. Passed 1.30 sec test 157 Start 157: plm-adjust-f 157: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-f" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd;--hist-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--hist-levels;128;--hist-points;5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 157: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 157: Test timeout computed to be: 1500 102: RETVAL: 0 102: STDOUT: Rendering DRR 0 102: I/O time: 0.000446 sec 102: Rendering DRR 1 102: I/O time: 0.000425 sec 102: Rendering DRR 2 102: I/O time: 0.000431 sec 102: Rendering DRR 3 102: I/O time: 0.000351 sec 102: Rendering DRR 4 102: I/O time: 0.000373 sec 102: Rendering DRR 5 102: I/O time: 0.000452 sec 102: Rendering DRR 6 102: I/O time: 0.000470 sec 102: Rendering DRR 7 102: I/O time: 0.000393 sec 102: Rendering DRR 8 102: I/O time: 0.000409 sec 102: Rendering DRR 9 102: I/O time: 0.000512 sec 102: Rendering DRR 10 102: I/O time: 0.000509 sec 102: Rendering DRR 11 102: I/O time: 0.000368 sec 102: Rendering DRR 12 102: I/O time: 0.000462 sec 102: Rendering DRR 13 102: I/O time: 0.000443 sec 102: Rendering DRR 14 102: I/O time: 0.000447 sec 102: Rendering DRR 15 102: I/O time: 0.000437 sec 102: Rendering DRR 16 102: I/O time: 0.000455 sec 102: Rendering DRR 17 102: I/O time: 0.000451 sec 102: Rendering DRR 18 102: I/O time: 0.000403 sec 102: Rendering DRR 19 102: I/O time: 0.000480 sec 102: Total time: 0.87236 secs 102: 102: STDERR: 102: Not an error 65/578 Test #102: drr-b ................................. Passed 1.78 sec test 160 Start 160: plm-adjust-g 160: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-g" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd;--linear-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 160: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 160: Test timeout computed to be: 1500 105: RETVAL: 0 105: STDOUT: Rendering DRR 0 105: I/O time: 0.000469 sec 105: Rendering DRR 1 105: I/O time: 0.000388 sec 105: Rendering DRR 2 105: I/O time: 0.000468 sec 105: Rendering DRR 3 105: I/O time: 0.000443 sec 105: Rendering DRR 4 105: I/O time: 0.000415 sec 105: Rendering DRR 5 105: I/O time: 0.000465 sec 105: Rendering DRR 6 105: I/O time: 0.000406 sec 105: Rendering DRR 7 105: I/O time: 0.000415 sec 105: Rendering DRR 8 105: I/O time: 0.000369 sec 105: Rendering DRR 9 105: I/O time: 0.000496 sec 105: Rendering DRR 10 105: I/O time: 0.000478 sec 105: Rendering DRR 11 105: I/O time: 0.000454 sec 105: Rendering DRR 12 105: I/O time: 0.000466 sec 105: Rendering DRR 13 105: I/O time: 0.000372 sec 105: Rendering DRR 14 105: I/O time: 0.000383 sec 105: Rendering DRR 15 105: I/O time: 0.000435 sec 105: Rendering DRR 16 105: I/O time: 0.000345 sec 105: Rendering DRR 17 105: I/O time: 0.000378 sec 105: Rendering DRR 18 105: I/O time: 0.000409 sec 105: Rendering DRR 19 105: I/O time: 0.000419 sec 105: Total time: 0.875297 secs 105: 105: STDERR: 105: Not an error 157: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 157: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd;--hist-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--hist-levels;128;--hist-points;5 157: EXPECTED_ERRNO is 66/578 Test #105: drr-c ................................. Passed 1.77 sec test 163 Start 163: plm-adjust-h 163: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-h" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd;--linear-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--input-mask;donut-2.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 163: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 163: Test timeout computed to be: 1500 119: RETVAL: 0 119: STDOUT: 180.000000 119: 180.000000 119: 180.000000 119: 180.000000 119: 180.000000 119: 180.000000 119: 180.000000 119: 180.000000 119: coeff 0 -18.4133 0.0962 0.0000 119: coeff 1 -7.5271 -0.0286 0.0000 119: coeff 2 -6.1678 1.3625 -0.0000 119: coeff 3 -20.1368 -0.9723 0.0000 119: coeff 4 -19.7774 -0.2570 -0.0000 119: coeff 5 -7.3050 1.5884 0.0000 119: coeff 6 -7.4759 -0.3261 -0.0000 119: coeff 7 -20.6523 -0.1769 -0.0000 119: Creating output vf 119: Rendering vector field 119: Wendland RBF, updating the vector field 119: Converting volume to float 119: Creating output vol 119: Warping image 119: Direction cosines: vin = 1.000000 0.000000 0.000000 ... 119: vf = 1.000000 0.000000 0.000000 ... 119: spac: vin = 13.157895 13.157895 13.157895 ... 119: vf = 13.157895 13.157895 13.157895 ... 119: proj: vin = 0.076000 -0.000000 0.000000 ... 119: vf = 0.076000 -0.000000 0.000000 ... 119: step: vin = 13.157895 0.000000 0.000000 ... 119: vf = 13.157895 0.000000 0.000000 ... 119: Freeing coeff 119: Done with rbf_wendland_warp 119: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha 119: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha 119: 119: STDERR: 119: Not an error 160: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 160: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd;--linear-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha 160: EXPECTED_ERRNO is 67/578 Test #119: landmark-warp-b ....................... Passed 1.52 sec test 166 Start 166: plm-adjust-i 166: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-i" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd;--local-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--patch-size;3 3 3;--ref-mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--local-scale-out;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-scale.nrrd;--local-shift-out;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-shift.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 166: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 166: Test timeout computed to be: 1500 166: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 166: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd;--local-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--patch-size;3 3 3;--ref-mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--local-scale-out;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-scale.nrrd;--local-shift-out;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-shift.nrrd 166: EXPECTED_ERRNO is 163: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 163: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd;--linear-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--input-mask;donut-2.mha 163: EXPECTED_ERRNO is 142: RETVAL: 0 142: STDOUT: Applying piece-wise linear transform... 142: done. 142: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd 142: Finished! 142: 142: STDERR: 142: Not an error 68/578 Test #142: plm-adjust-a .......................... Passed 1.02 sec test 169 Start 169: plm-adjust-j 169: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-j" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd;--local-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--patch-size;3 3 3;--ref-mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--local-scale-out;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-scale.nrrd;--local-shift-out;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-shift.nrrd;--local-blending-off" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 169: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 169: Test timeout computed to be: 1500 133: RETVAL: 0 133: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd 133: 133: STDERR: 133: Not an error 69/578 Test #133: plm-add-b ............................. Passed 1.42 sec test 172 Start 172: plm-boundary-a 172: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;adaptive;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 172: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 172: Test timeout computed to be: 1500 172: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 172: PARMS is boundary;--boundary-behavior;adaptive;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha 172: EXPECTED_ERRNO is 169: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 169: PARMS is adjust;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd;--local-match;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--patch-size;3 3 3;--ref-mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--local-scale-out;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-scale.nrrd;--local-shift-out;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-shift.nrrd;--local-blending-off 169: EXPECTED_ERRNO is 108: RETVAL: 0 108: STDOUT: Reconstructing... 108: Processing image 0 108: Processing image 1 108: Processing image 2 108: Processing image 3 108: Processing image 4 108: Processing image 5 108: Processing image 6 108: Processing image 7 108: Processing image 8 108: Processing image 9 108: Processing image 10 108: Processing image 11 108: Processing image 12 108: Processing image 13 108: Processing image 14 108: Processing image 15 108: Processing image 16 108: Processing image 17 108: Processing image 18 108: Processing image 19 108: I/O time (total) = 0.00376844 108: I/O time (per image) = 0.000188422 108: Filter time = 0 108: Filter time (per image) = 0 108: Backprojection time = 1.29792 108: Backprojection time (per image) = 0.0648962 108: Writing output volume(s)... 108: done. 108: 108: 108: STDERR: 108: Not an error 70/578 Test #108: fdk-cpu-a ............................. Passed 2.07 sec test 175 Start 175: plm-boundary-b 175: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;zero-pad;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 175: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 175: Test timeout computed to be: 1500 145: RETVAL: 0 145: STDOUT: Applying piece-wise linear transform... 145: done. 145: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd 145: Finished! 145: 145: STDERR: 145: Not an error 71/578 Test #145: plm-adjust-b .......................... Passed 0.96 sec test 178 Start 178: plm-boundary-c 178: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;edge-pad;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 178: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 178: Test timeout computed to be: 1500 175: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 175: PARMS is boundary;--boundary-behavior;zero-pad;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha 175: EXPECTED_ERRNO is 178: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 178: PARMS is boundary;--boundary-behavior;edge-pad;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha 178: EXPECTED_ERRNO is 154: RETVAL: 0 154: STDOUT: Applying shift=1000 and scale=2.5 ... done. 154: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd 154: Finished! 154: 154: STDERR: 154: Not an error 72/578 Test #154: plm-adjust-e .......................... Passed 0.81 sec test 181 Start 181: plm-boundary-d 181: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;adaptive;--boundary-type;interior-face;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 181: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 181: Test timeout computed to be: 1500 148: RETVAL: 0 148: STDOUT: Applying shift=100 and scale=1 ... done. 148: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd 148: Finished! 148: 148: STDERR: 148: Not an error 73/578 Test #148: plm-adjust-c .......................... Passed 1.02 sec test 184 Start 184: plm-boundary-e 184: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-e" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;edge-pad;--boundary-type;interior-face;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 184: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 184: Test timeout computed to be: 1500 181: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 181: PARMS is boundary;--boundary-behavior;adaptive;--boundary-type;interior-face;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha 181: EXPECTED_ERRNO is 184: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 184: PARMS is boundary;--boundary-behavior;edge-pad;--boundary-type;interior-face;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha 184: EXPECTED_ERRNO is 151: RETVAL: 0 151: STDOUT: Applying piece-wise linear transform... 151: done. 151: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd 151: Finished! 151: 151: STDERR: 151: Not an error 74/578 Test #151: plm-adjust-d .......................... Passed 1.08 sec test 190 Start 190: plm-convert-dicom-b 190: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--filenames-without-uids;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom;--metadata;0018,5100&equal&FFS" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 190: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 190: Test timeout computed to be: 1500 163: RETVAL: 0 163: STDOUT: Computing statistics for linear match... 163: Time = 0.021974 seconds 163: Adjusting image. shift = 0.158838; scale = 0.000442518 done. 163: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd 163: Finished! 163: 163: STDERR: 163: Not an error 190: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 190: PARMS is convert;--filenames-without-uids;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom;--metadata;0018,5100&equal&FFS 190: EXPECTED_ERRNO is 75/578 Test #163: plm-adjust-h .......................... Passed 0.68 sec test 199 Start 199: plm-convert-dicom-donut-a 199: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 199: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 199: Test timeout computed to be: 1500 199: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 199: PARMS is convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd 199: EXPECTED_ERRNO is 178: RETVAL: 0 178: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd 178: 178: STDERR: 178: Not an error 166: RETVAL: 0 166: STDOUT: Applying local intensity matching... 166: Time = 0.006810 seconds 166: Time = 0.007926 seconds 166: Time = 0.008130 seconds 166: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-shift.nrrd 166: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-scale.nrrd 166: done. 166: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd 166: Finished! 166: 166: STDERR: 166: Not an error 76/578 Test #178: plm-boundary-c ........................ Passed 0.47 sec test 202 Start 202: plm-convert-dicom-donut-b 202: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd;--xor-contours" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 202: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 202: Test timeout computed to be: 1500 77/578 Test #166: plm-adjust-i .......................... Passed 0.80 sec test 206 Start 206: plm-convert-cxt 206: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-cxt" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha;--output-ss-list;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 206: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 206: Test timeout computed to be: 1500 160: RETVAL: 0 160: STDOUT: Computing statistics for linear match... 160: Adjusting image. shift = 0.289174; scale = 0.000314475 done. 160: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd 160: Finished! 160: 160: STDERR: 160: Not an error 78/578 Test #160: plm-adjust-g .......................... Passed 0.89 sec test 210 Start 210: plm-convert-dose-scale 210: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dose-scale" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input-dose-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha;--output-dose-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha;--dose-scale;77.7" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 210: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 210: Test timeout computed to be: 1500 202: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 202: PARMS is convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd;--xor-contours 202: EXPECTED_ERRNO is 172: RETVAL: 0 172: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd 172: 172: STDERR: 172: Not an error 79/578 Test #172: plm-boundary-a ........................ Passed 0.76 sec test 213 Start 213: plm-crop-a 213: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=crop;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a.mha;--voxels;5 15 3 18 7 9" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 213: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 213: Test timeout computed to be: 1500 206: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 206: PARMS is convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha;--output-ss-list;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.txt 206: EXPECTED_ERRNO is 210: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 210: PARMS is convert;--input-dose-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha;--output-dose-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha;--dose-scale;77.7 210: EXPECTED_ERRNO is 169: RETVAL: 0 169: STDOUT: Applying local intensity matching... 169: Time = 0.011464 seconds 169: Time = 0.003395 seconds 169: Time = 0.003846 seconds 169: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-shift.nrrd 169: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-scale.nrrd 169: done. 169: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd 169: Finished! 169: 169: STDERR: 169: Not an error 80/578 Test #169: plm-adjust-j .......................... Passed 0.83 sec test 216 Start 216: plm-crop-b 216: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=crop;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b.mha;--coordinates;-15 10 3 18 -12 -7" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 216: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 216: Test timeout computed to be: 1500 213: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 213: PARMS is crop;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a.mha;--voxels;5 15 3 18 7 9 213: EXPECTED_ERRNO is 216: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 216: PARMS is crop;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b.mha;--coordinates;-15 10 3 18 -12 -7 216: EXPECTED_ERRNO is 184: RETVAL: 0 184: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd 184: 184: STDERR: 184: Not an error 81/578 Test #184: plm-boundary-e ........................ Passed 0.54 sec test 219 Start 219: plm-crop-c 219: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=crop;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c.mha;--structure;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 219: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 219: Test timeout computed to be: 1500 175: RETVAL: 0 175: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd 175: 175: STDERR: 175: Not an error 82/578 Test #175: plm-boundary-b ........................ Passed 0.75 sec test 256 Start 256: plm-fill-a 256: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-fill-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=fill;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 256: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 256: Test timeout computed to be: 1500 21: RETVAL: 0 21: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha 21: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix/Body.mha 21: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix/Tumor.mha 21: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix/Lung.mha 21: Doing extraction 21: Keyholizing structure 0. 21: Keyholizing structure 1. 21: Keyholizing structure 2. 21: Write: DoseGridScaling = 0.000000 21: 21: STDERR: 21: Not an error 219: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 219: PARMS is crop;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c.mha;--structure;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha 219: EXPECTED_ERRNO is 83/578 Test #21: lung-1 ................................ Passed 5.43 sec test 193 Start 193: plm-convert-dicom-c 193: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-dicom/;--output-prefix;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 193: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 193: Test timeout computed to be: 1500 256: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 256: PARMS is fill;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha 256: EXPECTED_ERRNO is 181: RETVAL: 0 181: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd 181: 181: STDERR: 181: Not an error 193: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 193: PARMS is convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-dicom/;--output-prefix;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix 193: EXPECTED_ERRNO is 84/578 Test #181: plm-boundary-d ........................ Passed 0.69 sec test 259 Start 259: plm-mask-a 259: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-mask-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=mask;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--mask-value;-1000" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 259: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 259: Test timeout computed to be: 1500 157: RETVAL: 0 157: STDOUT: Performing histogram matching... 157: done. 157: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd 157: Finished! 157: 157: STDERR: 157: Not an error 85/578 Test #157: plm-adjust-f .......................... Passed 1.25 sec test 262 Start 262: plm-gamma-a 262: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=gamma;--compute-full-region;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 262: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 262: Test timeout computed to be: 1500 259: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 259: PARMS is mask;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--mask-value;-1000 259: EXPECTED_ERRNO is 262: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 262: PARMS is gamma;--compute-full-region;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha 262: EXPECTED_ERRNO is 216: RETVAL: 0 216: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b.mha 216: 216: STDERR: 216: Not an error 86/578 Test #216: plm-crop-b ............................ Passed 0.39 sec test 265 Start 265: plm-gamma-b 265: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=gamma;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-13.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 265: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 265: Test timeout computed to be: 1500 340: RETVAL: 0 340: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 340: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha 340: Launching registration worker thread 340: Inside registration worker thread 340: Doing registration stage 340: [1] xf_in->m_type = 0, xf_out->m_type = 0 340: RESAMPLE 1 1: (1 1 1), (1 1 1) 340: RESAMPLE 1 1: (1 1 1), (1 1 1) 340: volume_calc_grad complete. 340: bspline_xform_initialize 340: rdims = (3,3,3) 340: vox_per_rgn = (15,15,15) 340: cdims = (6 6 6) 340: Algorithm flavor = c 340: Threading = 0 340: >> Checking JH allocation 340: >> Performing JH allocation 340: BSPLINE PARMS 340: max_its = 10 340: max_feval = 10 340: BSPLINE XFORM HEADER 340: vox_per_rgn = 15 15 15 340: roi_offset = 0 0 0 340: roi_dim = 38 38 38 340: img_dc = 1 0 0 0 1 0 0 0 1 340: BST METRICS 340: MET 110100 MI 1.000000 340: >> Performing JH initialization 340: Using alpha_0 (1.000000) 340: [ 0, 0] MI -0.3659457 NV 54872 GM -0.007 GN 0.00788 [ 0.235 s ] 340: CMIN 0.01 CAVG 0.01 CMAX 0.01 340: [ 0, 1] MI -0.3699214 NV 54872 GM -0.056 GN 0.00867 [ 0.188 s ] 340: CMIN -0.21 CAVG 0.01 CMAX 0.30 340: GR 0.50 NEW_A 1.00 ACCEPT? 1 340: [ 1, 2] MI -0.3777946 NV 54872 GM -0.049 GN 0.00903 [ 0.340 s ] 340: CMIN -0.23 CAVG 0.02 CMAX 0.69 340: GR 0.91 NEW_A 3.00 ACCEPT? 1 340: [ 2, 3] MI -0.4137608 NV 54753 GM -0.063 GN 0.017 [ 0.576 s ] 340: CMIN -0.35 CAVG 0.05 CMAX 2.09 340: GR 3.98 NEW_A 9.00 ACCEPT? 1 340: [ 3, 4] MI -0.5521525 NV 53587 GM -0.081 GN 0.017 [ 0.469 s ] 340: CMIN -0.97 CAVG 0.10 CMAX 7.08 340: GR 8.16 NEW_A 27.00 ACCEPT? 1 340: [ 4, 5] MI -1.2166027 NV 49761 GM -0.031 GN 0.0276 [ 0.224 s ] 340: CMIN -2.22 CAVG 0.30 CMAX 20.76 340: GR 38.97 NEW_A 81.00 ACCEPT? 1 340: [ 5, 6] MI -0.4035923 NV 36457 GM -0.029 GN 0.0114 [ 0.201 s ] 340: CMIN -26.58 CAVG 0.44 CMAX 33.14 340: GR -29.50 NEW_A 40.50 ACCEPT? 0 340: [ 5, 7] MI -0.7946788 NV 43303 GM -0.068 GN 0.0215 [ 0.185 s ] 340: CMIN -14.21 CAVG 0.37 CMAX 26.12 340: GR -15.31 NEW_A 20.25 ACCEPT? 0 340: [ 5, 8] MI -1.1523657 NV 46825 GM -0.160 GN 0.031 [ 0.174 s ] 340: CMIN -8.02 CAVG 0.33 CMAX 23.44 340: GR -2.33 NEW_A 10.12 ACCEPT? 0 340: [ 5, 9] MI -1.3108922 NV 48385 GM -0.176 GN 0.0266 [ 0.191 s ] 340: CMIN -4.93 CAVG 0.31 CMAX 22.10 340: GR 3.42 NEW_A 30.38 ACCEPT? 1 340: [ 6, 10] MI -0.7927921 NV 46839 GM 0.149 GN 0.0234 [ 0.172 s ] 340: CMIN -2.23 CAVG 0.62 CMAX 17.80 340: GR -19.50 NEW_A 15.19 ACCEPT? 0 340: [2] xf_out->m_type = 9, xf_in->m_type = 0 340: ** Registration worker thread finished. 340: Writing transformation ... 340: Warping... 340: Running: plm_warp_native 340: Converting input image... 340: Converting xform... 340: bspline_xform_initialize 340: rdims = (3,3,3) 340: vox_per_rgn = (15,15,15) 340: cdims = (6 6 6) 340: Creating output vf... 340: Creating output volume... 340: Running native warper... 340: bspline_warp complete. 340: Back convert to original type... 340: > Convert vf to itk 340: > Conversion complete. 340: plm_warp_native is complete. 340: Saving image... 340: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-img.mha 340: Saving vf... 340: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-vf.mha 340: Load: 0.228035 340: Run: 2.97481 340: Save: 0.0740991 340: Total: 3.27695 340: Finished! 340: 340: STDERR: 340: Not an error 87/578 Test #340: plm-bsp-mi-c-2 ........................ Passed 4.30 sec test 272 Start 272: plm-maximum-a 272: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-maximum-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=maximum;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 272: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 272: Test timeout computed to be: 1500 265: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 265: PARMS is gamma;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-13.mha 265: EXPECTED_ERRNO is 210: RETVAL: 0 210: STDOUT: Setting PIH from DOSE 210: PIH is: 210: Origin = -243.4211 -243.4211 -243.4211 210: Size = 38 38 38 210: Spacing = 13.1579 13.1579 13.1579 210: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 210: Rt_study_warp: Saving dose image (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha) 210: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha 210: Rt_study_warp: warp and save ss. 210: Finished! 210: 210: STDERR: 210: Not an error 88/578 Test #210: plm-convert-dose-scale ................ Passed 0.60 sec test 275 Start 275: plm-multiply-a 275: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=multiply;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 275: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 275: Test timeout computed to be: 1500 199: RETVAL: 0 199: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542157.1683112257.255988RTDOSE 199: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542157.1683112257.255989RTSTRUCT 199: Found DCM_ReferencedFrameOfReferenceSequence! 199: Found DCM_RTReferencedStudySequence! 199: Trying to load rt dose. 199: Load: DoseGridScaling = 0.000000 199: RTDOSE: dim = 38 38 38 199: ipp = -25.000000 -25.000000 -25.000000 199: spc = 1.315790 1.315790 1.315790 199: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 199: Bits_alloc: 32 199: Bits_stored: 32 199: High_bit: 31 199: Pixel_rep: 0 199: rc = 1, length = 109744, npix = 54872 199: Trying to load rt structure set. 199: Adding structure (1), Foreground 199: Structure 1 has color 255\0\0 199: Setting PIH from RDD 199: PIH is: 199: Origin = -25.0000 -25.0000 -25.0000 199: Size = 38 38 38 199: Spacing = 1.3158 1.3158 1.3158 199: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 199: Rt_study_warp: Convert ss_img to cxt. 199: Rt_study_warp: Apply dicom_dir. 199: Rt_study_warp: Set geometry from PIH. 199: Rt_study_warp: Set rasterization geometry. 199: rast_dim = 512 512 14 199: rast_offset = -10.3618 -10.3618 -9.21053 199: rast_spacing = 0.0404759 0.0404759 1.31579 199: Rt_study_warp: warp and save ss. 199: Warp_and_save_ss: seg->rasterize 199: Rasterizing... 199: Converting... 199: Finished rasterization. 199: Warp_and_save_ss: save_ss_img 199: save_ss_img: save_ss_image 199: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd 199: Finished! 199: 199: STDERR: 199: Not an error 89/578 Test #199: plm-convert-dicom-donut-a ............. Passed 0.82 sec test 278 Start 278: plm-multiply-vf-a 278: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-vf-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=multiply;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 278: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 278: Test timeout computed to be: 1500 272: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 272: PARMS is maximum;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha 272: EXPECTED_ERRNO is 190: RETVAL: 0 190: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542141.1683112258.256388RTDOSE 190: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542141.1683112258.256389RTSTRUCT 190: Found DCM_ReferencedFrameOfReferenceSequence! 190: Found DCM_RTReferencedStudySequence! 190: Trying to load rt dose. 190: Load: DoseGridScaling = 0.000000 190: RTDOSE: dim = 38 38 38 190: ipp = -243.421005 -243.421005 -243.421005 190: spc = 13.157900 13.157900 13.157900 190: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 190: Bits_alloc: 32 190: Bits_stored: 32 190: High_bit: 31 190: Pixel_rep: 0 190: rc = 1, length = 109744, npix = 54872 190: Trying to load rt structure set. 190: Adding structure (1), Foreground 190: Structure 1 has color 255\0\0 190: Setting PIH from RDD 190: PIH is: 190: Origin = -243.4211 -243.4211 -243.4211 190: Size = 38 38 38 190: Spacing = 13.1579 13.1579 13.1579 190: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 190: Rt_study_warp: Convert ss_img to cxt. 190: Rt_study_warp: Apply dicom_dir. 190: Rt_study_warp: Set geometry from PIH. 190: Rt_study_warp: Set rasterization geometry. 190: rast_dim = 512 512 7 190: rast_offset = -55.2632 -55.2632 -46.0526 190: rast_spacing = 0.215872 0.215872 13.1579 190: Rt_study_warp: warp and save ss. 190: Warp_and_save_ss: save_ss_img 190: Rt_study_warp: Save dicom. 190: Keyholizing structure 0. 190: Write: DoseGridScaling = 0.000000 190: Finished! 190: 190: STDERR: 190: Not an error 90/578 Test #190: plm-convert-dicom-b ................... Passed 0.91 sec test 282 Start 282: plm-reg-align-center 282: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-align-center" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 282: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 282: Test timeout computed to be: 1500 202: RETVAL: 0 202: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542157.1683112257.255988RTDOSE 202: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542157.1683112257.255989RTSTRUCT 202: Found DCM_ReferencedFrameOfReferenceSequence! 202: Found DCM_RTReferencedStudySequence! 202: Trying to load rt dose. 202: Load: DoseGridScaling = 0.000000 202: RTDOSE: dim = 38 38 38 202: ipp = -25.000000 -25.000000 -25.000000 202: spc = 1.315790 1.315790 1.315790 202: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 202: Bits_alloc: 32 202: Bits_stored: 32 202: High_bit: 31 202: Pixel_rep: 0 202: rc = 1, length = 109744, npix = 54872 202: Trying to load rt structure set. 202: Adding structure (1), Foreground 202: Structure 1 has color 255\0\0 202: Setting PIH from RDD 202: PIH is: 202: Origin = -25.0000 -25.0000 -25.0000 202: Size = 38 38 38 202: Spacing = 1.3158 1.3158 1.3158 202: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 202: Rt_study_warp: Convert ss_img to cxt. 202: Rt_study_warp: Apply dicom_dir. 202: Rt_study_warp: Set geometry from PIH. 202: Rt_study_warp: Set rasterization geometry. 202: rast_dim = 512 512 14 202: rast_offset = -10.3618 -10.3618 -9.21053 202: rast_spacing = 0.0404759 0.0404759 1.31579 202: Rt_study_warp: warp and save ss. 202: Warp_and_save_ss: seg->rasterize 202: Rasterizing... 202: Converting... 202: Finished rasterization. 202: Warp_and_save_ss: save_ss_img 202: save_ss_img: save_ss_image 202: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd 202: Finished! 202: 202: STDERR: 202: Not an error 91/578 Test #202: plm-convert-dicom-donut-b ............. Passed 0.73 sec test 288 Start 288: plm-reg-itk-rigid-a 288: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-rigid-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 288: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 288: Test timeout computed to be: 1500 278: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 278: PARMS is multiply;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha 278: EXPECTED_ERRNO is 275: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 275: PARMS is multiply;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha 275: EXPECTED_ERRNO is 282: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 282: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center.txt 282: EXPECTED_ERRNO is 288: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 288: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a.txt 288: EXPECTED_ERRNO is 206: RETVAL: 0 206: STDOUT: CT_SERIES_UID|1.2.826.0.1.3680043.8.274.1.1.8323329.3542969.1683112259.231955| 206: CT_STUDY_UID|1.2.826.0.1.3680043.8.274.1.1.8323329.3542969.1683112259.231971| 206: CT_FRAME_OF_REFERENCE_UID|1.2.826.0.1.3680043.8.274.1.1.8323329.3542969.1683112259.231972| 206: PATIENT_NAME|ANONYMOUS| 206: PATIENT_ID|PL616837151897465| 206: PATIENT_SEX|O| 206: STUDY_ID|10001| 206: OFFSET|-55.2632 -55.2632 -46.0526| 206: DIMENSION|512 512 7| 206: SPACING|0.215872 0.215872 13.1579| 206: ROI_NAMES|| 206: Starting structure parsing 206: Starting contour parsing 206: Setting PIH from structure set spacing 206: PIH is: 206: Origin = -55.2632 -55.2632 -46.0526 206: Size = 512 512 7 206: Spacing = 0.2159 0.2159 13.1579 206: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 206: Rt_study_warp: Convert ss_img to cxt. 206: Rt_study_warp: Apply dicom_dir. 206: Rt_study_warp: Set geometry from PIH. 206: Rt_study_warp: Set rasterization geometry. 206: rast_dim = 512 512 7 206: rast_offset = -55.2632 -55.2632 -46.0526 206: rast_spacing = 0.215872 0.215872 13.1579 206: Rt_study_warp: warp and save ss. 206: Warp_and_save_ss: seg->rasterize 206: Rasterizing... 206: Converting... 206: Finished rasterization. 206: Warp_and_save_ss: save_ss_img 206: save_ss_img: save_ss_image 206: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha 206: save_ss_img: save_ss_list 206: Done. 206: Finished! 206: 206: STDERR: 206: Not an error 92/578 Test #206: plm-convert-cxt ....................... Passed 0.82 sec test 293 Start 293: plm-reg-itk-similarity 293: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-similarity" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 293: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 293: Test timeout computed to be: 1500 219: RETVAL: 0 219: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c.mha 219: 219: STDERR: 219: Not an error 93/578 Test #219: plm-crop-c ............................ Passed 0.66 sec test 298 Start 298: plm-reg-itk-bspline 298: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-bspline" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 298: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 298: Test timeout computed to be: 1500 22: RETVAL: 0 22: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha 22: Doing extraction 22: Keyholizing structure 0. 22: Keyholizing structure 1. 22: Keyholizing structure 2. 22: Write: DoseGridScaling = 0.000000 22: 22: STDERR: 22: Not an error 293: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 293: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity.txt 293: EXPECTED_ERRNO is 94/578 Test #22: lung-2 ................................ Passed 4.42 sec test 301 Start 301: plm-reg-itk-demons 301: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 301: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 301: Test timeout computed to be: 1500 298: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 298: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline.txt 298: EXPECTED_ERRNO is 213: RETVAL: 0 213: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a.mha 213: 213: STDERR: 213: Not an error 301: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 301: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons.txt 301: EXPECTED_ERRNO is 95/578 Test #213: plm-crop-a ............................ Passed 0.88 sec test 311 Start 311: plm-bsp-mse-c 311: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 311: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 311: Test timeout computed to be: 1500 259: RETVAL: 0 259: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha 259: Finished! 259: 259: STDERR: 259: Not an error 96/578 Test #259: plm-mask-a ............................ Passed 0.70 sec test 314 Start 314: plm-bsp-mse-g 314: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-g" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 314: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 314: Test timeout computed to be: 1500 311: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 311: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c.txt 311: EXPECTED_ERRNO is 256: RETVAL: 0 256: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha 256: Finished! 256: 256: STDERR: 256: Not an error 97/578 Test #256: plm-fill-a ............................ Passed 0.87 sec test 320 Start 320: plm-bsp-mse-i 320: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-i" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 320: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 320: Test timeout computed to be: 1500 314: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 314: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g.txt 314: EXPECTED_ERRNO is 275: RETVAL: 0 275: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd 275: 275: STDERR: 275: Not an error 98/578 Test #275: plm-multiply-a ........................ Passed 0.50 sec test 323 Start 323: plm-bsp-mse-k 323: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-k" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 323: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 323: Test timeout computed to be: 1500 320: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 320: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i.txt 320: EXPECTED_ERRNO is 323: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 323: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k.txt 323: EXPECTED_ERRNO is 272: RETVAL: 0 272: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd 272: 272: STDERR: 272: Not an error 99/578 Test #272: plm-maximum-a ......................... Passed 0.70 sec test 326 Start 326: plm-bsp-mse-l 326: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-l" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 326: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 326: Test timeout computed to be: 1500 278: RETVAL: 0 278: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd 278: 278: STDERR: 278: Not an error 100/578 Test #278: plm-multiply-vf-a ..................... Passed 0.65 sec test 337 Start 337: plm-bsp-mi-c 337: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 337: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 337: Test timeout computed to be: 1500 282: RETVAL: 0 282: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 282: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-6.mha 282: Launching registration worker thread 282: Inside registration worker thread 282: Doing registration stage 282: [1] xf_in->m_type = 0, xf_out->m_type = 0 282: [2] xf_out->m_type = 1, xf_in->m_type = 0 282: ** Registration worker thread finished. 282: Writing transformation ... 282: Warping... 282: plm_warp_itk: xform_to_itk_vf 282: plm_warp_itk: convert_to_itk 282: plm_warp_itk: warping... 282: Saving image... 282: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-img.mha 282: Load: 0.0766859 282: Run: 0.000943184 282: Save: 0.0241349 282: Total: 0.101764 282: Finished! 282: 282: STDERR: 282: Not an error 326: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 326: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l.txt 326: EXPECTED_ERRNO is 101/578 Test #282: plm-reg-align-center .................. Passed 0.66 sec test 343 Start 343: plm-bsp-mi-k 343: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-k" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 343: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 343: Test timeout computed to be: 1500 337: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 337: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c.txt 337: EXPECTED_ERRNO is 343: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 343: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k.txt 343: EXPECTED_ERRNO is 265: RETVAL: 0 265: STDOUT: Gamma dose max is 10.000000 265: Time = 0.007956 seconds 265: Gamma calculation is under progress... 265: analysis threshold = 1.00 Gy 265: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha 265: Pass rate = 0.000000 % 265: 265: STDERR: 265: Not an error 102/578 Test #265: plm-gamma-b ........................... Passed 0.95 sec test 346 Start 346: plm-bsp-gm-k 346: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-gm-k" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 346: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 346: Test timeout computed to be: 1500 262: RETVAL: 0 262: STDOUT: Gamma dose max is 10.000000 262: Time = 0.015013 seconds 262: Gamma calculation is under progress... 262: analysis threshold = 1.00 Gy 262: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha 262: Pass rate = 100.000000 % 262: 262: STDERR: 262: Not an error 103/578 Test #262: plm-gamma-a ........................... Passed 1.15 sec test 351 Start 351: plm-bsp-openmp 351: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-openmp" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-openmp.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 351: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 351: Test timeout computed to be: 1500 346: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 346: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k.txt 346: EXPECTED_ERRNO is 351: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 351: PARMS is /build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-openmp.txt 351: EXPECTED_ERRNO is 193: RETVAL: 0 193: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542495.1683112262.192435RTDOSE 193: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542495.1683112262.192436RTSTRUCT 193: Found DCM_ReferencedFrameOfReferenceSequence! 193: Found DCM_RTReferencedStudySequence! 193: Trying to load rt dose. 193: Load: DoseGridScaling = 0.000000 193: RTDOSE: dim = 100 100 100 193: ipp = -247.500000 -247.500000 -247.500000 193: spc = 5.000000 5.000000 5.000000 193: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 193: Bits_alloc: 32 193: Bits_stored: 32 193: High_bit: 31 193: Pixel_rep: 0 193: rc = 1, length = 2000000, npix = 1000000 193: Trying to load rt structure set. 193: Adding structure (1), Body 193: Adding structure (2), Tumor 193: Adding structure (3), Lung 193: Structure 1 has color 255\0\0 193: Structure 2 has color 255\255\0 193: Structure 3 has color 255\0\255 193: Setting PIH from RDD 193: PIH is: 193: Origin = -247.5000 -247.5000 -247.5000 193: Size = 100 100 100 193: Spacing = 5.0000 5.0000 5.0000 193: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 193: Rt_study_warp: Convert ss_img to cxt. 193: Rt_study_warp: Apply dicom_dir. 193: Rt_study_warp: Set geometry from PIH. 193: Rt_study_warp: Set rasterization geometry. 193: rast_dim = 512 512 99 193: rast_offset = -157.5 -157.5 -247.5 193: rast_spacing = 0.615234 0.615234 5 193: Rt_study_warp: warp and save ss. 193: Warp_and_save_ss: seg->rasterize 193: Rasterizing... 193: Converting... 193: Finished rasterization. 193: Warp_and_save_ss: save_ss_img 193: save_ss_img: save_prefix 193: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Body.mha 193: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Tumor.mha 193: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Lung.mha 193: Finished! 193: 193: STDERR: 193: Not an error 104/578 Test #193: plm-convert-dicom-c ................... Passed 1.35 sec test 358 Start 358: plm-bsp-ushort 358: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-ushort" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-ushort.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 358: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 358: Test timeout computed to be: 1500 358: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 358: PARMS is /build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-ushort.txt 358: EXPECTED_ERRNO is 288: RETVAL: 0 288: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha 288: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha 288: Launching registration worker thread 288: Inside registration worker thread 288: Doing registration stage 288: [1] xf_in->m_type = 0, xf_out->m_type = 0 288: Fixed image for this stage: 288: Dim = 19 19 19 288: Origin = -236.842 -236.842 -236.842 288: Spacing = 26.3158 26.3158 26.3158 288: Direction Cosines = 288: 1 0 0 288: 0 1 0 288: 0 0 1 288: Moving image for this stage: 288: Dim = 19 19 19 288: Origin = -236.842 -236.842 -236.842 288: Spacing = 26.3158 26.3158 26.3158 288: Direction Cosines = 288: 1 0 0 288: 0 1 0 288: 0 0 1 288: Initial Parameters = [0, 0, 0, 0, 0, 0] 288: Starting ITK registration 288: StartEvent: [0, 0, 0, 0, 0, 0] 288: MSE [ 0, 0,10.00] 1339.481 [-4.036869646827599e-20, 8.106231711501361e-8, -8.106231711271498e-8, 9.999999999999996, -1.096129311626221e-14, -1.0957496630802156e-14] 288: :: [0, 0, 0, 0, 0, 0] 288: * 288: MSE [ 1, 1,10.00] 368.982 [4.13742126455135e-18, 1.6278511951960235e-7, -1.627851205579493e-7, 19.999999999999915, 8.969852837689337e-7, 8.969852835505952e-7] -970.50 288: :: [-4.036869646827599e-20, 8.106231711501361e-8, -8.106231711271498e-8, 9.999999999999996, -1.096129311626221e-14, -1.0957496630802156e-14] 288: * 288: MSE [ 2, 2, 5.00] 181.733 [-1.1503422157823281e-17, 5.896377564846332e-7, -5.896377771581046e-7, 15.000000000001307, 0.0000033932258749863136, 0.0000033932258256155003] -187.25 288: :: [4.13742126455135e-18, 1.6278511951960235e-7, -1.627851205579493e-7, 19.999999999999915, 8.969852837689337e-7, 8.969852835505952e-7] 288: * 288: MSE [ 3, 3, 2.50] 183.524 [-9.197057714634955e-18, 8.131742571415607e-7, -8.131742894725585e-7, 17.499999999998433, 0.000006036537002259964, 0.000006036536832817248] 1.79 (tol) 288: EndEvent: [-9.197057714634955e-18, 8.131742571415607e-7, -8.131742894725585e-7, 17.499999999998433, 0.000006036537002259964, 0.000006036536832817248] 288: VersorRigid3DTransformOptimizer: Maximum number of iterations (1) exceeded. 288: ITK registration complete 288: [2] xf_out->m_type = 2, xf_in->m_type = 0 288: Warping... 288: plm_warp_itk: xform_to_itk_vf 288: plm_warp_itk: convert_to_itk 288: plm_warp_itk: warping... 288: Saving image... 288: Trying to write image to plm-reg-itk-rigid-a-intermediate-img.mha 288: Doing registration stage 288: [1] xf_in->m_type = 2, xf_out->m_type = 0 288: Fixed image for this stage: 288: Dim = 38 38 38 288: Origin = -243.421 -243.421 -243.421 288: Spacing = 13.1579 13.1579 13.1579 288: Direction Cosines = 288: 1 0 0 288: 0 1 0 288: 0 0 1 288: Moving image for this stage: 288: Dim = 38 38 38 288: Origin = -243.421 -243.421 -243.421 288: Spacing = 13.1579 13.1579 13.1579 288: Direction Cosines = 288: 1 0 0 288: 0 1 0 288: 0 0 1 288: Initial Parameters = [4.13742126455135e-18, 1.6278511951960235e-7, -1.627851205579493e-7, 19.999999999999915, 8.969852837689337e-7, 8.969852835505952e-7] 288: Starting ITK registration 288: StartEvent: [4.13742126455135e-18, 1.6278511951960235e-7, -1.627851205579493e-7, 19.999999999999915, 8.969852837689337e-7, 8.969852835505952e-7] 288: MSE [ 0, 0,10.00] 616.559 [-2.1716432245355239e-16, -0.000003330236049859761, 0.000003330235947647176, 10.000000000052827, -0.000021019174512756676, -0.000021019174447012113] 288: :: [4.13742126455135e-18, 1.6278511951960235e-7, -1.627851205579493e-7, 19.999999999999915, 8.969852837689337e-7, 8.969852835505952e-7] 288: * 288: MSE [ 1, 1, 5.00] 1335.870 [-9.189992927422128e-17, -0.0000019933576719170645, 0.000001993357641955915, 14.9999999999192, -0.000046728744956865106, -0.00004672874598978125] 719.31 288: MSE [ 2, 2, 5.00] 909.428 [6.149160029432496e-17, -9.215023616933814e-7, 9.21502382250043e-7, 19.99999999966778, -0.000011337953197704317, -0.000011337953398788367] -426.44 288: MSE [ 3, 3, 2.50] 616.561 [-5.071615320232948e-16, 0.000004240909186795595, -0.000004240909079678499, 17.500000002328246, 0.00006956053052638395, 0.00006956053212582534] -292.87 288: MSE [ 4, 4, 1.25] 668.182 [-1.387908694328788e-16, 0.000003139906341357198, -0.0000031399063058399214, 18.75000000156098, 0.000038669894854095167, 0.000038669895747688614] 51.62 288: EndEvent: [-1.387908694328788e-16, 0.000003139906341357198, -0.0000031399063058399214, 18.75000000156098, 0.000038669894854095167, 0.000038669895747688614] 288: VersorRigid3DTransformOptimizer: Maximum number of iterations (5) exceeded. 288: ITK registration complete 288: [2] xf_out->m_type = 2, xf_in->m_type = 2 288: ** Registration worker thread finished. 288: Writing transformation ... 288: Warping... 288: plm_warp_itk: xform_to_itk_vf 288: plm_warp_itk: convert_to_itk 288: plm_warp_itk: warping... 288: Saving image... 288: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-img.mha 288: Saving vf... 288: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-vf.mha 288: Load: 0.123868 288: Run: 0.355797 288: Save: 0.030606 288: Total: 0.510271 288: Finished! 288: 288: STDERR: 288: Not an error 105/578 Test #288: plm-reg-itk-rigid-a ................... Passed 1.09 sec test 361 Start 361: plm-bsp-double 361: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-double" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 361: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 361: Test timeout computed to be: 1500 293: RETVAL: 0 293: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2s.mha 293: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha 293: Launching registration worker thread 293: Inside registration worker thread 293: Doing registration stage 293: [1] xf_in->m_type = 0, xf_out->m_type = 0 293: Fixed image for this stage: 293: Dim = 19 19 19 293: Origin = -236.842 -236.842 -236.842 293: Spacing = 26.316 26.316 26.316 293: Direction Cosines = 293: 1 0 0 293: 0 1 0 293: 0 0 1 293: Moving image for this stage: 293: Dim = 19 19 19 293: Origin = -236.842 -236.842 -236.842 293: Spacing = 26.3158 26.3158 26.3158 293: Direction Cosines = 293: 1 0 0 293: 0 1 0 293: 0 0 1 293: Initial Parameters = [0, 0, 0, 0, 0, 0, 1] 293: Starting ITK registration 293: StartEvent: [] 293: MSE [ 1, 0,-1.00] 50982.091 [0, 0, 0, 0, 0, 0, 1] * 293: MSE [ 2, 1,-1.00] 43798.343 [0, 0, 0, -0.4593838948324258, 0.47067772433152183, -1.9737006269275084, 0.8764184123566656] -7183.75 * 293: MSE [ 3, 2,-1.00] 39030.004 [0, 0, 0, -0.9555136001504676, 0.27777212751612945, -2.9263769176831524, 0.7999915714784266] -4768.34 * 293: MSE [ 4, 3,-1.00] 39030.004 [0, 0, 0, -0.9555136001504676, 0.27777212751612945, -2.9263769176831524, 0.7999915714784266] 0.00 293: MSE [ 5, 4,-1.00] 36227.691 [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945] -2802.31 * 293: MSE [ 6, 5,-1.00] 36227.691 [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945] 0.00 (tol) 293: EndEvent: [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945] 293: OnePlusOneEvolutionaryOptimizer: Maximum number of iterations (1) exceeded. 293: ITK registration complete 293: [2] xf_out->m_type = 4, xf_in->m_type = 0 293: Warping... 293: plm_warp_itk: xform_to_itk_vf 293: plm_warp_itk: convert_to_itk 293: plm_warp_itk: warping... 293: Saving image... 293: Trying to write image to plm-reg-itk-similarity-intermediate-img.mha 293: Doing registration stage 293: [1] xf_in->m_type = 4, xf_out->m_type = 0 293: Fixed image for this stage: 293: Dim = 38 38 38 293: Origin = -243.421 -243.421 -243.421 293: Spacing = 13.158 13.158 13.158 293: Direction Cosines = 293: 1 0 0 293: 0 1 0 293: 0 0 1 293: Moving image for this stage: 293: Dim = 38 38 38 293: Origin = -243.421 -243.421 -243.421 293: Spacing = 13.1579 13.1579 13.1579 293: Direction Cosines = 293: 1 0 0 293: 0 1 0 293: 0 0 1 293: Initial Parameters = [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945] 293: Starting ITK registration 293: StartEvent: [] 293: MSE [ 1, 0,-1.00] 53402.170 [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945] * 293: MSE [ 2, 1,-1.00] 40041.651 [0, 0, 0, -1.9937447986384402, -0.27976460247132845, -4.526111859506667, 0.6346268196936601] -13360.52 * 293: MSE [ 3, 2,-1.00] 32234.274 [0, 0, 0, -2.4898745039564822, -0.4726701992867208, -5.478788150262311, 0.558199978815421] -7807.38 * 293: MSE [ 4, 3,-1.00] 32234.274 [0, 0, 0, -2.4898745039564822, -0.4726701992867208, -5.478788150262311, 0.558199978815421] 0.00 293: MSE [ 5, 4,-1.00] 31471.432 [0, 0, 0, -3.068721807612029, -1.5008846536057006, -5.104822465158318, 0.5164168146739889] -762.84 * 293: MSE [ 6, 5,-1.00] 31471.432 [0, 0, 0, -3.068721807612029, -1.5008846536057006, -5.104822465158318, 0.5164168146739889] 0.00 (tol) 293: EndEvent: [0, 0, 0, -3.068721807612029, -1.5008846536057006, -5.104822465158318, 0.5164168146739889] 293: OnePlusOneEvolutionaryOptimizer: Maximum number of iterations (1) exceeded. 293: ITK registration complete 293: [2] xf_out->m_type = 4, xf_in->m_type = 4 293: Warping... 293: plm_warp_itk: xform_to_itk_vf 293: plm_warp_itk: convert_to_itk 293: plm_warp_itk: warping... 293: Saving image... 293: Trying to write image to plm-reg-itk-similarity-img.mha 293: ** Registration worker thread finished. 293: Writing transformation ... 293: Warping... 293: plm_warp_itk: xform_to_itk_vf 293: plm_warp_itk: convert_to_itk 293: plm_warp_itk: warping... 293: Saving image... 293: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-a-img.mha 293: Saving vf... 293: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-a-vf.mha 293: Load: 0.0661709 293: Run: 0.365923 293: Save: 0.046876 293: Total: 0.47897 293: Finished! 293: 293: STDERR: 293: Not an error 361: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 361: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double.txt 361: EXPECTED_ERRNO is 311: RETVAL: 0 311: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 311: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 311: Launching registration worker thread 311: Inside registration worker thread 311: Doing registration stage 311: [1] xf_in->m_type = 0, xf_out->m_type = 0 311: RESAMPLE 1 1: (2 2 2), (2 2 2) 311: RESAMPLE 1 1: (2 2 2), (2 2 2) 311: volume_calc_grad complete. 311: bspline_xform_initialize 311: rdims = (2,2,2) 311: vox_per_rgn = (11,11,11) 311: cdims = (5 5 5) 311: Algorithm flavor = c 311: Threading = 0 311: >> Checking JH allocation 311: BSPLINE PARMS 311: max_its = 5 311: max_feval = 5 311: BSPLINE XFORM HEADER 311: vox_per_rgn = 11 11 11 311: roi_offset = 0 0 0 311: roi_dim = 19 19 19 311: img_dc = 1 0 0 0 1 0 0 0 1 311: BST METRICS 311: MET 110100 MSE 1.000000 311: Setting nmax, mmax = 375 21 311: >>> START 311: This problem is unconstrained. 311: [ 0, 0] MSE 18756.248 NV 6859 GM -2980.062 GN 852 [ 0.008 s ] 311: CMIN 0.00 CAVG 0.00 CMAX 0.00 311: LSD 0.00 311: [ 0, 1] MSE 17838.643 NV 6859 GM -2882.390 GN 824 [ 0.004 s ] 311: CMIN -0.07 CAVG 0.01 CMAX 0.68 311: LSD 1.00 311: [ 0, 2] MSE 14464.868 NV 6858 GM -2822.145 GN 824 [ 0.008 s ] 311: CMIN -0.35 CAVG 0.05 CMAX 3.40 311: LSD 5.00 311: [ 0, 3] MSE 3829.069 NV 6286 GM -1585.570 GN 459 [ 0.012 s ] 311: CMIN -1.48 CAVG 0.20 CMAX 14.26 311: LSD 21.00 311: [ 1, 4] MSE 3098.610 NV 5455 GM 1176.112 GN 399 [ 0.004 s ] 311: CMIN -1.74 CAVG 0.44 CMAX 32.50 311: LSD 27.95 311: [ 2, 5] MSE 282.038 NV 5851 GM 54.493 GN 43.4 [ 0.012 s ] 311: CMIN -1.73 CAVG 0.34 CMAX 23.99 311: LSD 13.11 311: [2] xf_out->m_type = 9, xf_in->m_type = 0 311: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 311: bspline_xform_initialize 311: rdims = (2,2,2) 311: vox_per_rgn = (22,22,22) 311: cdims = (5 5 5) 311: ** Registration worker thread finished. 311: Writing transformation ... 311: Warping... 311: Running: plm_warp_native 311: Converting input image... 311: Converting xform... 311: bspline_xform_initialize 311: rdims = (2,2,2) 311: vox_per_rgn = (22,22,22) 311: cdims = (5 5 5) 311: Creating output vf... 311: Creating output volume... 311: Running native warper... 311: bspline_warp complete. 311: Back convert to original type... 311: > Convert vf to itk 311: > Conversion complete. 311: plm_warp_native is complete. 311: Saving image... 311: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-img.mha 311: Saving vf... 311: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-vf.mha 311: Load: 0.100973 311: Run: 0.106624 311: Save: 0.0745211 311: Total: 0.282118 311: Finished! 311: 311: STDERR: 311: Not an error 106/578 Test #293: plm-reg-itk-similarity ................ Passed 1.04 sec test 365 Start 365: plm-bsp-char-output 365: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-char-output" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-char-output.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 365: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 365: Test timeout computed to be: 1500 107/578 Test #311: plm-bsp-mse-c ......................... Passed 0.94 sec test 369 Start 369: plm-bsp-regularize-none 369: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-none" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 369: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 369: Test timeout computed to be: 1500 369: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 369: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none.txt 369: EXPECTED_ERRNO is 365: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 365: PARMS is /build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-char-output.txt 365: EXPECTED_ERRNO is 301: RETVAL: 0 301: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 301: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 301: Launching registration worker thread 301: Inside registration worker thread 301: Doing registration stage 301: [1] xf_in->m_type = 0, xf_out->m_type = 0 301: Ready to start registration. 301: MSE [ 0] 18945.891 [ 0.103 secs] 301: MSE [ 1] 9752.760 [ 0.116 secs] 301: MSE [ 2] 3751.365 [ 0.088 secs] 301: MSE [ 3] 960.721 [ 0.112 secs] 301: MSE [ 4] 204.827 [ 0.148 secs] 301: Done with registration. Writing output... 301: Deformation stats (out) 301: VF_MAX = 97.6986 VF_AVG = 31.9237 301: [2] xf_out->m_type = 8, xf_in->m_type = 0 301: ** Registration worker thread finished. 301: Warping... 301: plm_warp_itk: xform_to_itk_vf 301: plm_warp_itk: convert_to_itk 301: plm_warp_itk: warping... 301: Saving image... 301: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-img.mha 301: Saving vf... 301: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-vf.mha 301: Load: 0.117797 301: Run: 0.579591 301: Save: 0.0143471 301: Total: 0.711735 301: Finished! 301: 301: STDERR: 301: Not an error 323: RETVAL: 0 323: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 323: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 323: Launching registration worker thread 323: Inside registration worker thread 323: Doing registration stage 323: [1] xf_in->m_type = 0, xf_out->m_type = 0 323: RESAMPLE 1 1: (2 2 2), (2 2 2) 323: RESAMPLE 1 1: (2 2 2), (2 2 2) 323: volume_calc_grad complete. 323: bspline_xform_initialize 323: rdims = (2,2,2) 323: vox_per_rgn = (11,11,11) 323: cdims = (5 5 5) 323: Algorithm flavor = k 323: Threading = 0 323: >> Checking JH allocation 323: BSPLINE PARMS 323: max_its = 5 323: max_feval = 5 323: BSPLINE XFORM HEADER 323: vox_per_rgn = 11 11 11 323: roi_offset = 0 0 0 323: roi_dim = 19 19 19 323: img_dc = 1 0 0 0 1 0 0 0 1 323: BST METRICS 323: MET 110100 MSE 1.000000 323: Setting nmax, mmax = 375 21 323: >>> START 323: This problem is unconstrained. 323: [ 0, 0] MSE 18756.248 NV 6859 GM -2980.062 GN 852 [ 0.028 s ] 323: CMIN 0.00 CAVG 0.00 CMAX 0.00 323: LSD 0.00 323: [ 0, 1] MSE 17838.643 NV 6859 GM -2882.390 GN 824 [ 0.016 s ] 323: CMIN -0.07 CAVG 0.01 CMAX 0.68 323: LSD 1.00 323: [ 0, 2] MSE 14464.868 NV 6858 GM -2822.145 GN 824 [ 0.017 s ] 323: CMIN -0.35 CAVG 0.05 CMAX 3.40 323: LSD 5.00 323: [ 0, 3] MSE 3829.069 NV 6286 GM -1585.570 GN 459 [ 0.016 s ] 323: CMIN -1.48 CAVG 0.20 CMAX 14.26 323: LSD 21.00 323: [ 1, 4] MSE 3098.610 NV 5455 GM 1176.112 GN 399 [ 0.016 s ] 323: CMIN -1.74 CAVG 0.44 CMAX 32.50 323: LSD 27.95 323: [ 2, 5] MSE 282.038 NV 5851 GM 54.493 GN 43.4 [ 0.024 s ] 323: CMIN -1.73 CAVG 0.34 CMAX 23.99 323: LSD 13.11 323: [2] xf_out->m_type = 9, xf_in->m_type = 0 323: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 323: bspline_xform_initialize 323: rdims = (2,2,2) 323: vox_per_rgn = (22,22,22) 323: cdims = (5 5 5) 323: ** Registration worker thread finished. 323: Writing transformation ... 323: Warping... 323: Running: plm_warp_native 323: Converting input image... 323: Converting xform... 323: bspline_xform_initialize 323: rdims = (2,2,2) 323: vox_per_rgn = (22,22,22) 323: cdims = (5 5 5) 323: Creating output vf... 323: Creating output volume... 323: Running native warper... 323: bspline_warp complete. 323: Back convert to original type... 323: > Convert vf to itk 323: > Conversion complete. 323: plm_warp_native is complete. 323: Saving image... 323: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-img.mha 323: Saving vf... 323: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-vf.mha 323: Load: 0.140429 323: Run: 0.186768 323: Save: 0.118136 323: Total: 0.445333 323: Finished! 323: 323: STDERR: 323: Not an error 108/578 Test #323: plm-bsp-mse-k ......................... Passed 1.10 sec test 372 Start 372: plm-bsp-regularize-analytic 372: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-analytic" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 372: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 372: Test timeout computed to be: 1500 109/578 Test #301: plm-reg-itk-demons .................... Passed 1.35 sec test 375 Start 375: plm-bsp-regularize-numeric 375: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-numeric" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 375: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 375: Test timeout computed to be: 1500 372: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 372: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic.txt 372: EXPECTED_ERRNO is 314: RETVAL: 0 314: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 314: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 314: Launching registration worker thread 314: Inside registration worker thread 314: Doing registration stage 314: [1] xf_in->m_type = 0, xf_out->m_type = 0 314: RESAMPLE 1 1: (2 2 2), (2 2 2) 314: RESAMPLE 1 1: (2 2 2), (2 2 2) 314: volume_calc_grad complete. 314: bspline_xform_initialize 314: rdims = (2,2,2) 314: vox_per_rgn = (11,11,11) 314: cdims = (5 5 5) 314: Algorithm flavor = g 314: Threading = 0 314: >> Checking JH allocation 314: BSPLINE PARMS 314: max_its = 5 314: max_feval = 5 314: BSPLINE XFORM HEADER 314: vox_per_rgn = 11 11 11 314: roi_offset = 0 0 0 314: roi_dim = 19 19 19 314: img_dc = 1 0 0 0 1 0 0 0 1 314: BST METRICS 314: MET 110100 MSE 1.000000 314: Setting nmax, mmax = 375 21 314: >>> START 314: This problem is unconstrained. 314: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.057 s ] 314: CMIN 0.00 CAVG 0.00 CMAX 0.00 314: LSD 0.00 314: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.060 s ] 314: CMIN -0.07 CAVG 0.01 CMAX 0.68 314: LSD 1.00 314: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.052 s ] 314: CMIN -0.35 CAVG 0.05 CMAX 3.40 314: LSD 5.00 314: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.036 s ] 314: CMIN -1.48 CAVG 0.20 CMAX 14.26 314: LSD 21.00 314: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.039 s ] 314: CMIN -1.74 CAVG 0.44 CMAX 32.50 314: LSD 27.95 314: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.024 s ] 314: CMIN -1.73 CAVG 0.34 CMAX 23.99 314: LSD 13.11 314: [2] xf_out->m_type = 9, xf_in->m_type = 0 314: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 314: bspline_xform_initialize 314: rdims = (2,2,2) 314: vox_per_rgn = (22,22,22) 314: cdims = (5 5 5) 314: ** Registration worker thread finished. 314: Writing transformation ... 314: Warping... 314: Running: plm_warp_native 314: Converting input image... 314: Converting xform... 314: bspline_xform_initialize 314: rdims = (2,2,2) 314: vox_per_rgn = (22,22,22) 314: cdims = (5 5 5) 314: Creating output vf... 314: Creating output volume... 314: Running native warper... 314: bspline_warp complete. 314: Back convert to original type... 314: > Convert vf to itk 314: > Conversion complete. 314: plm_warp_native is complete. 314: Saving image... 314: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-img.mha 314: Saving vf... 314: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-vf.mha 314: Load: 0.187573 314: Run: 0.324336 314: Save: 0.126334 314: Total: 0.638243 314: Finished! 314: 314: STDERR: 314: Not an error 110/578 Test #314: plm-bsp-mse-g ......................... Passed 1.32 sec test 379 Start 379: plm-bsp-landmark-b 379: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 379: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 379: Test timeout computed to be: 1500 379: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 379: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b.txt 379: EXPECTED_ERRNO is 375: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 375: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric.txt 375: EXPECTED_ERRNO is 320: RETVAL: 0 320: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 320: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 320: Launching registration worker thread 320: Inside registration worker thread 320: Doing registration stage 320: [1] xf_in->m_type = 0, xf_out->m_type = 0 320: RESAMPLE 1 1: (2 2 2), (2 2 2) 320: RESAMPLE 1 1: (2 2 2), (2 2 2) 320: volume_calc_grad complete. 320: bspline_xform_initialize 320: rdims = (2,2,2) 320: vox_per_rgn = (11,11,11) 320: cdims = (5 5 5) 320: Algorithm flavor = i 320: Threading = 0 320: >> Checking JH allocation 320: BSPLINE PARMS 320: max_its = 5 320: max_feval = 5 320: BSPLINE XFORM HEADER 320: vox_per_rgn = 11 11 11 320: roi_offset = 0 0 0 320: roi_dim = 19 19 19 320: img_dc = 1 0 0 0 1 0 0 0 1 320: BST METRICS 320: MET 110100 MSE 1.000000 320: Setting nmax, mmax = 375 21 320: >>> START 320: This problem is unconstrained. 320: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.066 s ] 320: CMIN 0.00 CAVG 0.00 CMAX 0.00 320: LSD 0.00 320: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.050 s ] 320: CMIN -0.07 CAVG 0.01 CMAX 0.68 320: LSD 1.00 320: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.040 s ] 320: CMIN -0.35 CAVG 0.05 CMAX 3.40 320: LSD 5.00 320: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.040 s ] 320: CMIN -1.48 CAVG 0.20 CMAX 14.26 320: LSD 21.00 320: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.040 s ] 320: CMIN -1.74 CAVG 0.44 CMAX 32.50 320: LSD 27.95 320: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.053 s ] 320: CMIN -1.73 CAVG 0.34 CMAX 23.99 320: LSD 13.11 320: [2] xf_out->m_type = 9, xf_in->m_type = 0 320: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 320: bspline_xform_initialize 320: rdims = (2,2,2) 320: vox_per_rgn = (22,22,22) 320: cdims = (5 5 5) 320: ** Registration worker thread finished. 320: Writing transformation ... 320: Warping... 320: Running: plm_warp_native 320: Converting input image... 320: Converting xform... 320: bspline_xform_initialize 320: rdims = (2,2,2) 320: vox_per_rgn = (22,22,22) 320: cdims = (5 5 5) 320: Creating output vf... 320: Creating output volume... 320: Running native warper... 320: bspline_warp complete. 320: Back convert to original type... 320: > Convert vf to itk 320: > Conversion complete. 320: plm_warp_native is complete. 320: Saving image... 320: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-img.mha 320: Saving vf... 320: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-vf.mha 320: Load: 0.189786 320: Run: 0.367456 320: Save: 0.125205 320: Total: 0.682447 320: Finished! 320: 320: STDERR: 320: Not an error 111/578 Test #320: plm-bsp-mse-i ......................... Passed 1.38 sec test 382 Start 382: plm-bsp-landmark-c 382: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 382: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 382: Test timeout computed to be: 1500 382: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 382: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c.txt 382: EXPECTED_ERRNO is 326: RETVAL: 0 326: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 326: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 326: Launching registration worker thread 326: Inside registration worker thread 326: Doing registration stage 326: [1] xf_in->m_type = 0, xf_out->m_type = 0 326: RESAMPLE 1 1: (2 2 2), (2 2 2) 326: RESAMPLE 1 1: (2 2 2), (2 2 2) 326: volume_calc_grad complete. 326: bspline_xform_initialize 326: rdims = (2,2,2) 326: vox_per_rgn = (11,11,11) 326: cdims = (5 5 5) 326: Algorithm flavor = l 326: Threading = 0 326: >> Checking JH allocation 326: BSPLINE PARMS 326: max_its = 5 326: max_feval = 5 326: BSPLINE XFORM HEADER 326: vox_per_rgn = 11 11 11 326: roi_offset = 0 0 0 326: roi_dim = 19 19 19 326: img_dc = 1 0 0 0 1 0 0 0 1 326: BST METRICS 326: MET 110100 MSE 1.000000 326: Setting nmax, mmax = 375 21 326: >>> START 326: This problem is unconstrained. 326: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.022 s ] 326: CMIN 0.00 CAVG 0.00 CMAX 0.00 326: LSD 0.00 326: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.013 s ] 326: CMIN -0.07 CAVG 0.01 CMAX 0.68 326: LSD 1.00 326: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.022 s ] 326: CMIN -0.35 CAVG 0.05 CMAX 3.40 326: LSD 5.00 326: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.013 s ] 326: CMIN -1.48 CAVG 0.20 CMAX 14.26 326: LSD 21.00 326: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.013 s ] 326: CMIN -1.74 CAVG 0.44 CMAX 32.50 326: LSD 27.95 326: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.015 s ] 326: CMIN -1.73 CAVG 0.34 CMAX 23.99 326: LSD 13.11 326: [2] xf_out->m_type = 9, xf_in->m_type = 0 326: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 326: bspline_xform_initialize 326: rdims = (2,2,2) 326: vox_per_rgn = (22,22,22) 326: cdims = (5 5 5) 326: ** Registration worker thread finished. 326: Writing transformation ... 326: Warping... 326: Running: plm_warp_native 326: Converting input image... 326: Converting xform... 326: bspline_xform_initialize 326: rdims = (2,2,2) 326: vox_per_rgn = (22,22,22) 326: cdims = (5 5 5) 326: Creating output vf... 326: Creating output volume... 326: Running native warper... 326: bspline_warp complete. 326: Back convert to original type... 326: > Convert vf to itk 326: > Conversion complete. 326: plm_warp_native is complete. 326: Saving image... 326: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-img.mha 326: Saving vf... 326: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-vf.mha 326: Load: 0.312754 326: Run: 0.135905 326: Save: 0.11387 326: Total: 0.562529 326: Finished! 326: 326: STDERR: 326: Not an error 112/578 Test #326: plm-bsp-mse-l ......................... Passed 1.50 sec test 385 Start 385: plm-bsp-landmark-d 385: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 385: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 385: Test timeout computed to be: 1500 385: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 385: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d.txt 385: EXPECTED_ERRNO is 343: RETVAL: 0 343: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 343: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha 343: Launching registration worker thread 343: Inside registration worker thread 343: Doing registration stage 343: [1] xf_in->m_type = 0, xf_out->m_type = 0 343: RESAMPLE 1 1: (2 2 2), (2 2 2) 343: RESAMPLE 1 1: (2 2 2), (2 2 2) 343: volume_calc_grad complete. 343: bspline_xform_initialize 343: rdims = (5,5,5) 343: vox_per_rgn = (4,4,4) 343: cdims = (8 8 8) 343: Algorithm flavor = k 343: Threading = 0 343: >> Checking JH allocation 343: >> Performing JH allocation 343: BSPLINE PARMS 343: max_its = 10 343: max_feval = 10 343: BSPLINE XFORM HEADER 343: vox_per_rgn = 4 4 4 343: roi_offset = 0 0 0 343: roi_dim = 19 19 19 343: img_dc = 1 0 0 0 1 0 0 0 1 343: BST METRICS 343: MET 110100 MI 1.000000 343: >> Performing JH initialization 343: Setting nmax, mmax = 1536 41 343: >>> START 343: This problem is unconstrained. 343: [ 0, 0] MI -0.4031359 NV 6859 GM 0.148 GN 0.02 [ 0.037 s ] 343: CMIN 0.01 CAVG 0.01 CMAX 0.01 343: LSD 0.00 343: [ 0, 1] MI -0.3911095 NV 6859 GM -0.174 GN 0.0182 [ 0.028 s ] 343: CMIN -0.26 CAVG 0.01 CMAX 0.05 343: LSD 1.00 343: [ 0, 2] MI -0.4031149 NV 6859 GM -0.183 GN 0.0211 [ 0.020 s ] 343: CMIN -0.04 CAVG 0.01 CMAX 0.02 343: LSD 0.18 343: [ 0, 3] MI -0.4046610 NV 6859 GM -0.025 GN 0.0104 [ 0.028 s ] 343: CMIN -0.01 CAVG 0.01 CMAX 0.01 343: LSD 0.09 343: [ 1, 4] MI -0.4047489 NV 6859 GM 0.114 GN 0.0175 [ 0.020 s ] 343: CMIN -0.01 CAVG 0.01 CMAX 0.02 343: LSD 0.02 343: [ 2, 5] MI -0.4048453 NV 6859 GM -0.028 GN 0.0107 [ 0.033 s ] 343: CMIN -0.01 CAVG 0.01 CMAX 0.02 343: LSD 0.02 343: [ 3, 6] MI -0.4049332 NV 6859 GM -0.040 GN 0.011 [ 0.015 s ] 343: CMIN -0.01 CAVG 0.01 CMAX 0.02 343: LSD 0.02 343: [ 4, 7] MI -0.4051392 NV 6859 GM 0.031 GN 0.0124 [ 0.012 s ] 343: CMIN -0.03 CAVG 0.01 CMAX 0.04 343: LSD 0.14 343: [ 5, 8] MI -0.4052844 NV 6859 GM -0.024 GN 0.00604 [ 0.012 s ] 343: CMIN -0.03 CAVG 0.01 CMAX 0.05 343: LSD 0.04 343: [ 6, 9] MI -0.4053446 NV 6859 GM -0.069 GN 0.00892 [ 0.012 s ] 343: CMIN -0.04 CAVG 0.01 CMAX 0.06 343: LSD 0.03 343: [ 7, 10] MI -0.4054493 NV 6859 GM -0.111 GN 0.0121 [ 0.036 s ] 343: CMIN -0.04 CAVG 0.01 CMAX 0.07 343: LSD 0.05 343: [2] xf_out->m_type = 9, xf_in->m_type = 0 343: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 343: bspline_xform_initialize 343: rdims = (5,5,5) 343: vox_per_rgn = (8,8,8) 343: cdims = (8 8 8) 343: ** Registration worker thread finished. 343: Writing transformation ... 343: Warping... 343: Running: plm_warp_native 343: Converting input image... 343: Converting xform... 343: bspline_xform_initialize 343: rdims = (5,5,5) 343: vox_per_rgn = (8,8,8) 343: cdims = (8 8 8) 343: Creating output vf... 343: Creating output volume... 343: Running native warper... 343: bspline_warp complete. 343: Back convert to original type... 343: > Convert vf to itk 343: > Conversion complete. 343: plm_warp_native is complete. 343: Saving image... 343: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-img.mha 343: Saving vf... 343: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-vf.mha 343: Load: 0.100316 343: Run: 0.304305 343: Save: 0.0989411 343: Total: 0.503562 343: Finished! 343: 343: STDERR: 343: Not an error 113/578 Test #343: plm-bsp-mi-k .......................... Passed 1.52 sec test 388 Start 388: plm-bsp-landmark-e 388: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-e" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 388: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 388: Test timeout computed to be: 1500 337: RETVAL: 0 337: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 337: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha 337: Launching registration worker thread 337: Inside registration worker thread 337: Doing registration stage 337: [1] xf_in->m_type = 0, xf_out->m_type = 0 337: RESAMPLE 1 1: (2 2 2), (2 2 2) 337: RESAMPLE 1 1: (2 2 2), (2 2 2) 337: volume_calc_grad complete. 337: bspline_xform_initialize 337: rdims = (5,5,5) 337: vox_per_rgn = (4,4,4) 337: cdims = (8 8 8) 337: Algorithm flavor = c 337: Threading = 0 337: >> Checking JH allocation 337: >> Performing JH allocation 337: BSPLINE PARMS 337: max_its = 10 337: max_feval = 10 337: BSPLINE XFORM HEADER 337: vox_per_rgn = 4 4 4 337: roi_offset = 0 0 0 337: roi_dim = 19 19 19 337: img_dc = 1 0 0 0 1 0 0 0 1 337: BST METRICS 337: MET 110100 MI 1.000000 337: >> Performing JH initialization 337: Setting nmax, mmax = 1536 41 337: >>> START 337: This problem is unconstrained. 337: [ 0, 0] MI -0.4031359 NV 6859 GM 0.148 GN 0.02 [ 0.040 s ] 337: CMIN 0.01 CAVG 0.01 CMAX 0.01 337: LSD 0.00 337: [ 0, 1] MI -0.3911095 NV 6859 GM -0.174 GN 0.0182 [ 0.034 s ] 337: CMIN -0.26 CAVG 0.01 CMAX 0.05 337: LSD 1.00 337: [ 0, 2] MI -0.4031149 NV 6859 GM -0.183 GN 0.0211 [ 0.021 s ] 337: CMIN -0.04 CAVG 0.01 CMAX 0.02 337: LSD 0.18 337: [ 0, 3] MI -0.4046610 NV 6859 GM -0.025 GN 0.0104 [ 0.036 s ] 337: CMIN -0.01 CAVG 0.01 CMAX 0.01 337: LSD 0.09 337: [ 1, 4] MI -0.4047489 NV 6859 GM 0.114 GN 0.0175 [ 0.036 s ] 337: CMIN -0.01 CAVG 0.01 CMAX 0.02 337: LSD 0.02 337: [ 2, 5] MI -0.4048453 NV 6859 GM -0.028 GN 0.0107 [ 0.029 s ] 337: CMIN -0.01 CAVG 0.01 CMAX 0.02 337: LSD 0.02 337: [ 3, 6] MI -0.4049332 NV 6859 GM -0.040 GN 0.011 [ 0.029 s ] 337: CMIN -0.01 CAVG 0.01 CMAX 0.02 337: LSD 0.02 337: [ 4, 7] MI -0.4051392 NV 6859 GM 0.031 GN 0.0124 [ 0.024 s ] 337: CMIN -0.03 CAVG 0.01 CMAX 0.04 337: LSD 0.14 337: [ 5, 8] MI -0.4052844 NV 6859 GM -0.024 GN 0.00604 [ 0.048 s ] 337: CMIN -0.03 CAVG 0.01 CMAX 0.05 337: LSD 0.04 337: [ 6, 9] MI -0.4053446 NV 6859 GM -0.069 GN 0.00892 [ 0.067 s ] 337: CMIN -0.04 CAVG 0.01 CMAX 0.06 337: LSD 0.03 337: [ 7, 10] MI -0.4054493 NV 6859 GM -0.111 GN 0.0121 [ 0.056 s ] 337: CMIN -0.04 CAVG 0.01 CMAX 0.07 337: LSD 0.05 337: [2] xf_out->m_type = 9, xf_in->m_type = 0 337: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 337: bspline_xform_initialize 337: rdims = (5,5,5) 337: vox_per_rgn = (8,8,8) 337: cdims = (8 8 8) 337: ** Registration worker thread finished. 337: Writing transformation ... 337: Warping... 337: Running: plm_warp_native 337: Converting input image... 337: Converting xform... 337: bspline_xform_initialize 337: rdims = (5,5,5) 337: vox_per_rgn = (8,8,8) 337: cdims = (8 8 8) 337: Creating output vf... 337: Creating output volume... 337: Running native warper... 337: bspline_warp complete. 337: Back convert to original type... 337: > Convert vf to itk 337: > Conversion complete. 337: plm_warp_native is complete. 337: Saving image... 337: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-img.mha 337: Saving vf... 337: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-vf.mha 337: Load: 0.223977 337: Run: 0.486676 337: Save: 0.097209 337: Total: 0.807862 337: Finished! 337: 337: STDERR: 337: Not an error 114/578 Test #337: plm-bsp-mi-c .......................... Passed 1.65 sec test 391 Start 391: plm-bsp-dcos-a 391: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 391: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 391: Test timeout computed to be: 1500 388: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 388: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e.txt 388: EXPECTED_ERRNO is 346: RETVAL: 0 346: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 346: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha 346: Launching registration worker thread 346: Inside registration worker thread 346: Doing registration stage 346: [1] xf_in->m_type = 0, xf_out->m_type = 0 346: RESAMPLE 1 1: (2 2 2), (2 2 2) 346: RESAMPLE 1 1: (2 2 2), (2 2 2) 346: volume_calc_grad_mag complete. 346: volume_calc_grad_mag complete. 346: volume_calc_grad complete. 346: bspline_xform_initialize 346: rdims = (5,5,5) 346: vox_per_rgn = (4,4,4) 346: cdims = (8 8 8) 346: Algorithm flavor = k 346: Threading = 0 346: >> Checking JH allocation 346: BSPLINE PARMS 346: max_its = 20 346: max_feval = 20 346: BSPLINE XFORM HEADER 346: vox_per_rgn = 4 4 4 346: roi_offset = 0 0 0 346: roi_dim = 19 19 19 346: img_dc = 1 0 0 0 1 0 0 0 1 346: BST METRICS 346: MET 110100 GM 1.000000 346: Setting nmax, mmax = 1536 41 346: >>> START 346: This problem is unconstrained. 346: [ 0, 0] GM 172.628 NV 6859 GM -29.170 GN 4.3 [ 0.017 s ] 346: CMIN 0.00 CAVG 0.00 CMAX 0.00 346: LSD 0.00 346: [ 0, 1] GM 167.918 NV 6859 GM -28.658 GN 4.22 [ 0.013 s ] 346: CMIN -0.13 CAVG 0.00 CMAX 0.22 346: LSD 1.00 346: [ 0, 2] GM 149.959 NV 6859 GM -26.618 GN 3.91 [ 0.005 s ] 346: CMIN -0.66 CAVG 0.02 CMAX 1.08 346: LSD 5.00 346: [ 0, 3] GM 86.734 NV 6751 GM -21.624 GN 3.16 [ 0.017 s ] 346: CMIN -2.76 CAVG 0.09 CMAX 4.52 346: LSD 21.00 346: [ 1, 4] GM 45.340 NV 6066 GM 12.985 GN 2.28 [ 0.021 s ] 346: CMIN -8.79 CAVG 0.42 CMAX 26.13 346: LSD 77.01 346: [ 2, 5] GM 7.1179175 NV 6185 GM -1.370 GN 0.385 [ 0.013 s ] 346: CMIN -7.46 CAVG 0.30 CMAX 17.43 346: LSD 31.38 346: [ 3, 6] GM 5.8718486 NV 6215 GM -1.061 GN 0.253 [ 0.009 s ] 346: CMIN -7.26 CAVG 0.31 CMAX 16.96 346: LSD 4.23 346: [ 4, 7] GM 4.1875200 NV 6252 GM -0.481 GN 0.302 [ 0.012 s ] 346: CMIN -7.17 CAVG 0.33 CMAX 15.50 346: LSD 8.87 346: [ 5, 8] GM 2.5404434 NV 6268 GM 0.199 GN 0.327 [ 0.009 s ] 346: CMIN -7.33 CAVG 0.37 CMAX 12.64 346: LSD 13.58 346: [ 6, 9] GM 1.5809063 NV 6272 GM 0.253 GN 0.261 [ 0.008 s ] 346: CMIN -7.57 CAVG 0.41 CMAX 16.21 346: LSD 17.78 346: [ 7, 10] GM 1.2611113 NV 6186 GM -0.858 GN 0.254 [ 0.012 s ] 346: CMIN -8.47 CAVG 0.41 CMAX 17.69 346: LSD 6.01 346: [ 8, 11] GM 0.8998204 NV 6202 GM -0.272 GN 0.0629 [ 0.005 s ] 346: CMIN -8.10 CAVG 0.41 CMAX 16.37 346: LSD 4.02 346: [ 9, 12] GM 0.8851209 NV 6200 GM -0.119 GN 0.0425 [ 0.008 s ] 346: CMIN -8.11 CAVG 0.41 CMAX 16.43 346: LSD 1.40 346: [10, 13] GM 0.8340189 NV 6185 GM -0.041 GN 0.0494 [ 0.012 s ] 346: CMIN -8.22 CAVG 0.42 CMAX 16.47 346: LSD 2.71 346: [11, 14] GM 0.7303342 NV 6158 GM 0.209 GN 0.0438 [ 0.017 s ] 346: CMIN -8.31 CAVG 0.43 CMAX 16.15 346: LSD 3.16 346: [12, 15] GM 0.6365445 NV 6149 GM -0.660 GN 0.078 [ 0.021 s ] 346: CMIN -8.30 CAVG 0.43 CMAX 15.18 346: LSD 6.07 346: [13, 16] GM 0.5679634 NV 6142 GM 0.051 GN 0.0445 [ 0.020 s ] 346: CMIN -8.24 CAVG 0.45 CMAX 14.83 346: LSD 4.36 346: [14, 17] GM 0.4986858 NV 6140 GM 0.219 GN 0.0371 [ 0.025 s ] 346: CMIN -8.07 CAVG 0.45 CMAX 14.65 346: LSD 3.34 346: [15, 18] GM 0.4631230 NV 6160 GM 0.148 GN 0.0299 [ 0.025 s ] 346: CMIN -7.80 CAVG 0.46 CMAX 14.76 346: LSD 4.03 346: [16, 19] GM 0.4685278 NV 6160 GM 0.115 GN 0.0395 [ 0.016 s ] 346: CMIN -7.51 CAVG 0.46 CMAX 15.22 346: LSD 3.59 346: [16, 20] GM 0.4544649 NV 6161 GM 0.152 GN 0.026 [ 0.016 s ] 346: CMIN -7.71 CAVG 0.46 CMAX 14.89 346: LSD 1.09 346: [2] xf_out->m_type = 9, xf_in->m_type = 0 346: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 346: bspline_xform_initialize 346: rdims = (5,5,5) 346: vox_per_rgn = (8,8,8) 346: cdims = (8 8 8) 346: ** Registration worker thread finished. 346: Writing transformation ... 346: Warping... 346: Running: plm_warp_native 346: Converting input image... 346: Converting xform... 346: bspline_xform_initialize 346: rdims = (5,5,5) 346: vox_per_rgn = (8,8,8) 346: cdims = (8 8 8) 346: Creating output vf... 346: Creating output volume... 346: Running native warper... 346: bspline_warp complete. 346: Back convert to original type... 346: > Convert vf to itk 346: > Conversion complete. 346: plm_warp_native is complete. 346: Saving image... 346: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-img.mha 346: Saving vf... 346: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-vf.mha 346: Load: 0.146497 346: Run: 0.400197 346: Save: 0.101378 346: Total: 0.648072 346: Finished! 346: 346: STDERR: 346: Not an error 115/578 Test #346: plm-bsp-gm-k .......................... Passed 1.57 sec test 394 Start 394: plm-bsp-dcos-b 394: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 394: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 394: Test timeout computed to be: 1500 351: RETVAL: 0 351: STDOUT: Loading fixed image [0]: gauss-1.mha 351: Loading moving image [0]: gauss-2.mha 351: Launching registration worker thread 351: Inside registration worker thread 351: Doing registration stage 351: [1] xf_in->m_type = 0, xf_out->m_type = 0 351: RESAMPLE 1 1: (2 2 2), (2 2 2) 351: RESAMPLE 1 1: (2 2 2), (2 2 2) 351: volume_calc_grad complete. 351: bspline_xform_initialize 351: rdims = (2,2,2) 351: vox_per_rgn = (11,11,11) 351: cdims = (5 5 5) 351: Algorithm flavor = g 351: Threading = 0 351: >> Checking JH allocation 351: BSPLINE PARMS 351: max_its = 5 351: max_feval = 5 351: BSPLINE XFORM HEADER 351: vox_per_rgn = 11 11 11 351: roi_offset = 0 0 0 351: roi_dim = 19 19 19 351: img_dc = 1 0 0 0 1 0 0 0 1 351: BST METRICS 351: MET 110100 MSE 1.000000 351: Setting nmax, mmax = 375 21 351: >>> START 351: This problem is unconstrained. 351: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.060 s ] 351: CMIN 0.00 CAVG 0.00 CMAX 0.00 351: LSD 0.00 351: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.052 s ] 351: CMIN -0.07 CAVG 0.01 CMAX 0.68 351: LSD 1.00 351: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.036 s ] 351: CMIN -0.35 CAVG 0.05 CMAX 3.40 351: LSD 5.00 351: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.044 s ] 351: CMIN -1.48 CAVG 0.20 CMAX 14.26 351: LSD 21.00 351: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.036 s ] 351: CMIN -1.74 CAVG 0.44 CMAX 32.50 351: LSD 27.95 351: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.044 s ] 351: CMIN -1.73 CAVG 0.34 CMAX 23.99 351: LSD 13.11 351: [2] xf_out->m_type = 9, xf_in->m_type = 0 351: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 351: bspline_xform_initialize 351: rdims = (2,2,2) 351: vox_per_rgn = (22,22,22) 351: cdims = (5 5 5) 351: ** Registration worker thread finished. 351: Writing transformation ... 351: Warping... 351: Running: plm_warp_native 351: Converting input image... 351: Converting xform... 351: bspline_xform_initialize 351: rdims = (2,2,2) 351: vox_per_rgn = (22,22,22) 351: cdims = (5 5 5) 351: Creating output vf... 351: Creating output volume... 351: Running native warper... 351: bspline_warp complete. 351: Back convert to original type... 351: > Convert vf to itk 351: > Conversion complete. 351: plm_warp_native is complete. 351: Saving image... 351: Trying to write image to plm-bsp-openmp-img.mha 351: Saving vf... 351: Trying to write image to plm-bsp-openmp-vf.mha 351: Load: 0.212434 351: Run: 0.317079 351: Save: 0.0859818 351: Total: 0.615495 351: Finished! 351: 351: STDERR: 351: Not an error 391: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 391: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a.txt 391: EXPECTED_ERRNO is 116/578 Test #351: plm-bsp-openmp ........................ Passed 1.58 sec test 397 Start 397: plm-bsp-dcos-c 397: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 397: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 397: Test timeout computed to be: 1500 365: RETVAL: 0 365: STDOUT: Loading fixed image [0]: rect-2.mha 365: Loading moving image [0]: rect-3.mha 365: Launching registration worker thread 365: Inside registration worker thread 365: Doing registration stage 365: [1] xf_in->m_type = 0, xf_out->m_type = 0 365: RESAMPLE 1 1: (2 2 2), (2 2 2) 365: RESAMPLE 1 1: (2 2 2), (2 2 2) 365: volume_calc_grad complete. 365: bspline_xform_initialize 365: Warning: vox_per_rgn was less than 4. 365: Warning: vox_per_rgn was less than 4. 365: Warning: vox_per_rgn was less than 4. 365: rdims = (5,5,5) 365: vox_per_rgn = (4,4,4) 365: cdims = (8 8 8) 365: Algorithm flavor = h 365: Threading = 0 365: >> Checking JH allocation 365: BSPLINE PARMS 365: max_its = 5 365: max_feval = 5 365: BSPLINE XFORM HEADER 365: vox_per_rgn = 4 4 4 365: roi_offset = 0 0 0 365: roi_dim = 19 19 19 365: img_dc = 1 0 0 0 1 0 0 0 1 365: BST METRICS 365: MET 110100 MSE 1.000000 365: Setting nmax, mmax = 1536 41 365: >>> START 365: This problem is unconstrained. 365: [ 0, 0] MSE 1339.481 NV 6859 GM 84.834 GN 23.1 [ 0.025 s ] 365: CMIN 0.00 CAVG 0.00 CMAX 0.00 365: LSD 0.00 365: [ 0, 1] MSE 1311.345 NV 6859 GM 83.820 GN 22.8 [ 0.025 s ] 365: CMIN -0.60 CAVG -0.00 CMAX 0.08 365: LSD 1.00 365: [ 0, 2] MSE 1202.580 NV 6859 GM 79.773 GN 21.8 [ 0.019 s ] 365: CMIN -2.99 CAVG -0.01 CMAX 0.42 365: LSD 5.00 365: [ 0, 3] MSE 827.300 NV 6859 GM 63.686 GN 17.5 [ 0.020 s ] 365: CMIN -12.56 CAVG -0.05 CMAX 1.74 365: LSD 21.00 365: [ 1, 4] MSE 213.043 NV 6859 GM -16.873 GN 5.84 [ 0.024 s ] 365: CMIN -54.37 CAVG -0.20 CMAX 6.52 365: LSD 67.10 365: [ 2, 5] MSE 175.936 NV 6859 GM -0.450 GN 2.34 [ 0.005 s ] 365: CMIN -51.91 CAVG -0.18 CMAX 5.91 365: LSD 13.48 365: [2] xf_out->m_type = 9, xf_in->m_type = 0 365: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 365: bspline_xform_initialize 365: rdims = (5,5,5) 365: vox_per_rgn = (8,8,8) 365: cdims = (8 8 8) 365: ** Registration worker thread finished. 365: Warping... 365: Running: plm_warp_native 365: Converting input image... 365: Converting xform... 365: bspline_xform_initialize 365: rdims = (5,5,5) 365: vox_per_rgn = (8,8,8) 365: cdims = (8 8 8) 365: Creating output volume... 365: Running native warper... 365: bspline_warp complete. 365: Back convert to original type... 365: plm_warp_native is complete. 365: Saving image... 365: Trying to write image to plm-bsp-char-output.mha 365: Load: 0.205462 365: Run: 0.159053 365: Save: 0.0786262 365: Total: 0.443141 365: Finished! 365: 365: STDERR: 365: Not an error 117/578 Test #365: plm-bsp-char-output ................... Passed 1.25 sec test 400 Start 400: plm-bsp-dcos-d 400: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 400: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 400: Test timeout computed to be: 1500 394: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 394: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b.txt 394: EXPECTED_ERRNO is 397: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 397: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c.txt 397: EXPECTED_ERRNO is 358: RETVAL: 0 358: STDOUT: Loading fixed image [0]: gauss-ushort-1.mha 358: Loading moving image [0]: gauss-ushort-2.mha 358: Launching registration worker thread 358: Inside registration worker thread 358: Doing registration stage 358: [1] xf_in->m_type = 0, xf_out->m_type = 0 358: RESAMPLE 1 1: (2 2 2), (2 2 2) 358: RESAMPLE 1 1: (2 2 2), (2 2 2) 358: volume_calc_grad complete. 358: bspline_xform_initialize 358: rdims = (2,2,2) 358: vox_per_rgn = (11,11,11) 358: cdims = (5 5 5) 358: Algorithm flavor = h 358: Threading = 0 358: >> Checking JH allocation 358: BSPLINE PARMS 358: max_its = 5 358: max_feval = 5 358: BSPLINE XFORM HEADER 358: vox_per_rgn = 11 11 11 358: roi_offset = 0 0 0 358: roi_dim = 19 19 19 358: img_dc = 1 0 0 0 1 0 0 0 1 358: BST METRICS 358: MET 110100 MSE 1.000000 358: Setting nmax, mmax = 375 21 358: >>> START 358: This problem is unconstrained. 358: [ 0, 0] MSE 18754.957 NV 6859 GM -2979.950 GN 852 [ 0.024 s ] 358: CMIN 0.00 CAVG 0.00 CMAX 0.00 358: LSD 0.00 358: [ 0, 1] MSE 17837.379 NV 6859 GM -2882.285 GN 824 [ 0.020 s ] 358: CMIN -0.07 CAVG 0.01 CMAX 0.68 358: LSD 1.00 358: [ 0, 2] MSE 14463.688 NV 6858 GM -2822.063 GN 824 [ 0.025 s ] 358: CMIN -0.35 CAVG 0.05 CMAX 3.40 358: LSD 5.00 358: [ 0, 3] MSE 3828.428 NV 6286 GM -1585.519 GN 459 [ 0.004 s ] 358: CMIN -1.48 CAVG 0.20 CMAX 14.26 358: LSD 21.00 358: [ 1, 4] MSE 3098.900 NV 5455 GM 1176.149 GN 399 [ 0.040 s ] 358: CMIN -1.74 CAVG 0.44 CMAX 32.50 358: LSD 27.95 358: [ 2, 5] MSE 281.899 NV 5851 GM 54.406 GN 43.4 [ 0.016 s ] 358: CMIN -1.73 CAVG 0.34 CMAX 23.98 358: LSD 13.11 358: [2] xf_out->m_type = 9, xf_in->m_type = 0 358: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 358: bspline_xform_initialize 358: rdims = (2,2,2) 358: vox_per_rgn = (22,22,22) 358: cdims = (5 5 5) 358: ** Registration worker thread finished. 358: Writing transformation ... 358: Warping... 358: Running: plm_warp_native 358: Converting input image... 358: Converting xform... 358: bspline_xform_initialize 358: rdims = (2,2,2) 358: vox_per_rgn = (22,22,22) 358: cdims = (5 5 5) 358: Creating output vf... 358: Creating output volume... 358: Running native warper... 358: bspline_warp complete. 358: Back convert to original type... 358: > Convert vf to itk 358: > Conversion complete. 358: plm_warp_native is complete. 358: Saving image... 358: Trying to write image to plm-bsp-ushort-img.mha 358: Saving vf... 358: Trying to write image to plm-bsp-ushort-vf.mha 358: Load: 0.299164 358: Run: 0.207344 358: Save: 0.11209 358: Total: 0.618598 358: Finished! 358: 358: STDERR: 358: Not an error 118/578 Test #358: plm-bsp-ushort ........................ Passed 1.70 sec test 403 Start 403: plm-bsp-dcos-e 403: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-e" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 403: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 403: Test timeout computed to be: 1500 400: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 400: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d.txt 400: EXPECTED_ERRNO is 361: RETVAL: 0 361: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha 361: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha 361: Launching registration worker thread 361: Inside registration worker thread 361: Doing registration stage 361: [1] xf_in->m_type = 0, xf_out->m_type = 0 361: RESAMPLE 1 1: (2 2 2), (2 2 2) 361: RESAMPLE 1 1: (2 2 2), (2 2 2) 361: volume_calc_grad complete. 361: bspline_xform_initialize 361: rdims = (2,2,2) 361: vox_per_rgn = (11,11,11) 361: cdims = (5 5 5) 361: Algorithm flavor = h 361: Threading = 0 361: >> Checking JH allocation 361: BSPLINE PARMS 361: max_its = 5 361: max_feval = 5 361: BSPLINE XFORM HEADER 361: vox_per_rgn = 11 11 11 361: roi_offset = 0 0 0 361: roi_dim = 19 19 19 361: img_dc = 1 0 0 0 1 0 0 0 1 361: BST METRICS 361: MET 110100 MSE 1.000000 361: Setting nmax, mmax = 375 21 361: >>> START 361: This problem is unconstrained. 361: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.016 s ] 361: CMIN 0.00 CAVG 0.00 CMAX 0.00 361: LSD 0.00 361: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.016 s ] 361: CMIN -0.07 CAVG 0.01 CMAX 0.68 361: LSD 1.00 361: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.021 s ] 361: CMIN -0.35 CAVG 0.05 CMAX 3.40 361: LSD 5.00 361: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.020 s ] 361: CMIN -1.48 CAVG 0.20 CMAX 14.26 361: LSD 21.00 361: [ 1, 4] MSE 3098.536 NV 5455 GM 1176.092 GN 399 [ 0.016 s ] 361: CMIN -1.74 CAVG 0.44 CMAX 32.50 361: LSD 27.95 361: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.021 s ] 361: CMIN -1.73 CAVG 0.34 CMAX 23.99 361: LSD 13.11 361: [2] xf_out->m_type = 9, xf_in->m_type = 0 361: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 361: bspline_xform_initialize 361: rdims = (2,2,2) 361: vox_per_rgn = (22,22,22) 361: cdims = (5 5 5) 361: ** Registration worker thread finished. 361: Writing transformation ... 361: Warping... 361: Running: plm_warp_native 361: Converting input image... 361: Converting xform... 361: bspline_xform_initialize 361: rdims = (2,2,2) 361: vox_per_rgn = (22,22,22) 361: cdims = (5 5 5) 361: Creating output vf... 361: Creating output volume... 361: Running native warper... 361: bspline_warp complete. 361: Back convert to original type... 361: > Convert vf to itk 361: > Conversion complete. 361: plm_warp_native is complete. 361: Saving image... 361: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-img.mha 361: Saving vf... 361: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-vf.mha 361: Load: 0.248973 361: Run: 0.170827 361: Save: 0.105736 361: Total: 0.525536 361: Finished! 361: 361: STDERR: 361: Not an error 119/578 Test #361: plm-bsp-double ........................ Passed 1.58 sec test 406 Start 406: plm-bsp-dcos-f 406: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-f" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 406: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 406: Test timeout computed to be: 1500 403: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 403: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e.txt 403: EXPECTED_ERRNO is 406: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 406: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f.txt 406: EXPECTED_ERRNO is 369: RETVAL: 0 369: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha 369: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha 369: Launching registration worker thread 369: Inside registration worker thread 369: Doing registration stage 369: [1] xf_in->m_type = 0, xf_out->m_type = 0 369: RESAMPLE 1 1: (1 1 1), (1 1 1) 369: RESAMPLE 1 1: (1 1 1), (1 1 1) 369: volume_calc_grad complete. 369: bspline_xform_initialize 369: Warning: vox_per_rgn was less than 4. 369: Warning: vox_per_rgn was less than 4. 369: Warning: vox_per_rgn was less than 4. 369: rdims = (10,10,10) 369: vox_per_rgn = (4,4,4) 369: cdims = (13 13 13) 369: Algorithm flavor = g 369: Threading = 0 369: >> Checking JH allocation 369: BSPLINE PARMS 369: max_its = 5 369: max_feval = 5 369: BSPLINE XFORM HEADER 369: vox_per_rgn = 4 4 4 369: roi_offset = 0 0 0 369: roi_dim = 38 38 38 369: img_dc = 1 0 0 0 1 0 0 0 1 369: BST METRICS 369: MET 110100 MSE 1.000000 369: Setting nmax, mmax = 6591 83 369: >>> START 369: This problem is unconstrained. 369: [ 0, 0] MSE 5540.166 NV 54872 GM 0.000 GN 28.2 [ 0.088 s ] 369: CMIN 0.00 CAVG 0.00 CMAX 0.00 369: LSD 0.00 369: [ 0, 1] MSE 5484.124 NV 54872 GM 0.045 GN 27.8 [ 0.063 s ] 369: CMIN -0.16 CAVG -0.00 CMAX 0.22 369: LSD 1.00 369: [ 0, 2] MSE 5266.236 NV 54872 GM 0.224 GN 26.4 [ 0.048 s ] 369: CMIN -0.81 CAVG 0.00 CMAX 1.12 369: LSD 5.00 369: [ 0, 3] MSE 4484.536 NV 54872 GM 0.928 GN 20.9 [ 0.036 s ] 369: CMIN -3.39 CAVG 0.00 CMAX 4.70 369: LSD 21.00 369: [ 1, 4] MSE 2493.238 NV 54872 GM 0.677 GN 15.1 [ 0.049 s ] 369: CMIN -13.49 CAVG -0.00 CMAX 18.05 369: LSD 60.54 369: [ 2, 5] MSE 4765.919 NV 54872 GM 81.679 GN 34.3 [ 0.022 s ] 369: CMIN -43.65 CAVG -0.01 CMAX 57.84 369: LSD 218.24 369: [2] xf_out->m_type = 9, xf_in->m_type = 0 369: ** Registration worker thread finished. 369: Writing transformation ... 369: Warping... 369: Running: plm_warp_native 369: Converting input image... 369: Converting xform... 369: bspline_xform_initialize 369: rdims = (10,10,10) 369: vox_per_rgn = (4,4,4) 369: cdims = (13 13 13) 369: Creating output vf... 369: Creating output volume... 369: Running native warper... 369: bspline_warp complete. 369: Back convert to original type... 369: > Convert vf to itk 369: > Conversion complete. 369: plm_warp_native is complete. 369: Saving image... 369: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-img.mha 369: Saving vf... 369: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-vf.mha 369: Load: 0.287142 369: Run: 0.351823 369: Save: 0.131571 369: Total: 0.770536 369: Finished! 369: 369: STDERR: 369: Not an error 120/578 Test #369: plm-bsp-regularize-none ............... Passed 1.90 sec test 409 Start 409: plm-reg-multi-a 409: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 409: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 409: Test timeout computed to be: 1500 409: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 409: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a.txt 409: EXPECTED_ERRNO is 379: RETVAL: 0 379: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha 379: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha 379: Loading fixed landmarks: /build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv 379: Loading moving landmarks: /build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv 379: Launching registration worker thread 379: Inside registration worker thread 379: Doing registration stage 379: [1] xf_in->m_type = 0, xf_out->m_type = 0 379: RESAMPLE 1 1: (2 2 2), (2 2 2) 379: RESAMPLE 1 1: (2 2 2), (2 2 2) 379: volume_calc_grad complete. 379: bspline_xform_initialize 379: Warning: vox_per_rgn was less than 4. 379: Warning: vox_per_rgn was less than 4. 379: Warning: vox_per_rgn was less than 4. 379: rdims = (5,5,5) 379: vox_per_rgn = (4,4,4) 379: cdims = (8 8 8) 379: Algorithm flavor = h 379: Threading = 0 379: Landmarks: 8 fixed, 8 moving, lambda = 1.000000 379: >> Checking JH allocation 379: Computing landmark grid coordinates 379: image dc=-1 0 0 0 -1 0 0 0 1 379: image or=250 250 -236.842 379: image dm=19 19 19 379: [0], (-51.7821 -52.1629 46.0528) -> (11.467712 11.482183 10.750000) 379: [1], (52.5439 -52.1629 46.053) -> (7.503327 11.482183 10.750008) 379: [2], (53.3054 53.6862 46.053) -> (7.474390 7.459919 10.750008) 379: [3], (-52.5436 52.9247 46.053) -> (11.496650 7.488857 10.750008) 379: [4], (-52.5436 -52.1629 -46.0525) -> (11.496650 11.482183 7.250000) 379: [5], (53.3054 -51.7821 -46.053) -> (7.474390 11.467712 7.249981) 379: [6], (52.1632 53.3054 -46.053) -> (7.517794 7.474390 7.249981) 379: [7], (-52.9244 53.3054 -46.053) -> (11.511120 7.474390 7.249981) 379: BSPLINE PARMS 379: max_its = 5 379: max_feval = 5 379: BSPLINE XFORM HEADER 379: vox_per_rgn = 4 4 4 379: roi_offset = 0 0 0 379: roi_dim = 19 19 19 379: img_dc = -1 0 0 0 -1 0 0 0 1 379: BST METRICS 379: MET 110100 MSE 1.000000 379: Setting nmax, mmax = 1536 41 379: >>> START 379: This problem is unconstrained. 379: [ 0, 0] SCORE 1785.722 NV 6859 GM -104.585 GN 27.6 [ 0.025 s ] 379: MSE 1339.480 LM 446.242 379: CMIN 0.00 CAVG 0.00 CMAX 0.00 379: LSD 0.00 379: [ 0, 1] SCORE 1740.786 NV 6859 GM -103.163 GN 27.2 [ 0.028 s ] 379: MSE 1303.402 LM 437.384 379: CMIN -0.03 CAVG 0.00 CMAX 0.57 379: LSD 1.00 379: [ 0, 2] SCORE 1567.600 NV 6859 GM -97.477 GN 25.7 [ 0.021 s ] 379: MSE 1164.662 LM 402.938 379: CMIN -0.17 CAVG 0.01 CMAX 2.86 379: LSD 5.00 379: [ 0, 3] SCORE 979.240 NV 6859 GM -74.784 GN 19.7 [ 0.017 s ] 379: MSE 698.326 LM 280.914 379: CMIN -0.71 CAVG 0.05 CMAX 12.03 379: LSD 21.00 379: [ 1, 4] SCORE 118.835 NV 6859 GM 0.596 GN 3.68 [ 0.017 s ] 379: MSE 81.402 LM 37.433 379: CMIN -1.76 CAVG 0.19 CMAX 39.56 379: LSD 55.80 379: [ 2, 5] SCORE 69.736 NV 6859 GM 2.657 GN 2.64 [ 0.023 s ] 379: MSE 47.343 LM 22.393 379: CMIN -3.07 CAVG 0.19 CMAX 44.32 379: LSD 10.82 379: [2] xf_out->m_type = 9, xf_in->m_type = 0 379: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 379: bspline_xform_initialize 379: rdims = (5,5,5) 379: vox_per_rgn = (8,8,8) 379: cdims = (8 8 8) 379: ** Registration worker thread finished. 379: Writing transformation ... 379: Warping... 379: Running: plm_warp_native 379: Converting input image... 379: Converting xform... 379: bspline_xform_initialize 379: rdims = (5,5,5) 379: vox_per_rgn = (8,8,8) 379: cdims = (8 8 8) 379: Creating output vf... 379: Creating output volume... 379: Running native warper... 379: bspline_warp complete. 379: Back convert to original type... 379: > Convert vf to itk 379: > Conversion complete. 379: plm_warp_native is complete. 379: Saving image... 379: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-img.mha 379: Saving warped landmarks... 379: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-warped.fcsv 379: Saving vf... 379: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-vf.mha 379: Load: 0.352127 379: Run: 0.195635 379: Save: 0.135152 379: Total: 0.682914 379: Finished! 379: 379: STDERR: 379: Not an error 121/578 Test #379: plm-bsp-landmark-b .................... Passed 1.67 sec test 412 Start 412: plm-reg-multi-b 412: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 412: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 412: Test timeout computed to be: 1500 412: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 412: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b.txt 412: EXPECTED_ERRNO is 388: RETVAL: 0 388: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha 388: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha 388: Loading fixed landmarks: /build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.txt 388: Error parsing fcsv file: /build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.txt 388: Loading moving landmarks: /build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.txt 388: Error parsing fcsv file: /build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.txt 388: Launching registration worker thread 388: Inside registration worker thread 388: Doing registration stage 388: [1] xf_in->m_type = 0, xf_out->m_type = 0 388: RESAMPLE 1 1: (2 2 2), (2 2 2) 388: RESAMPLE 1 1: (2 2 2), (2 2 2) 388: volume_calc_grad complete. 388: bspline_xform_initialize 388: Warning: vox_per_rgn was less than 4. 388: Warning: vox_per_rgn was less than 4. 388: Warning: vox_per_rgn was less than 4. 388: rdims = (5,5,5) 388: vox_per_rgn = (4,4,4) 388: cdims = (8 8 8) 388: Algorithm flavor = h 388: Threading = 0 388: Landmarks: 0 fixed, 0 moving, lambda = 1.000000 388: >> Checking JH allocation 388: BSPLINE PARMS 388: max_its = 5 388: max_feval = 5 388: BSPLINE XFORM HEADER 388: vox_per_rgn = 4 4 4 388: roi_offset = 0 0 0 388: roi_dim = 19 19 19 388: img_dc = -1 0 0 0 -1 0 0 0 1 388: BST METRICS 388: MET 110100 MSE 1.000000 388: Setting nmax, mmax = 1536 41 388: >>> START 388: This problem is unconstrained. 388: [ 0, 0] MSE 1339.480 NV 6859 GM -84.834 GN 23.2 [ 0.013 s ] 388: CMIN 0.00 CAVG 0.00 CMAX 0.00 388: LSD 0.00 388: [ 0, 1] MSE 1303.294 NV 6859 GM -83.620 GN 22.8 [ 0.009 s ] 388: CMIN -0.04 CAVG 0.00 CMAX 0.59 388: LSD 1.00 388: [ 0, 2] MSE 1164.232 NV 6859 GM -78.768 GN 21.5 [ 0.013 s ] 388: CMIN -0.19 CAVG 0.01 CMAX 2.96 388: LSD 5.00 388: [ 0, 3] MSE 698.336 NV 6859 GM -59.420 GN 16.2 [ 0.009 s ] 388: CMIN -0.80 CAVG 0.05 CMAX 12.42 388: LSD 21.00 388: [ 1, 4] MSE 89.012 NV 6859 GM 0.171 GN 3.29 [ 0.017 s ] 388: CMIN -2.05 CAVG 0.17 CMAX 39.56 388: LSD 52.33 388: [ 2, 5] MSE 51.991 NV 6859 GM 2.502 GN 2.38 [ 0.012 s ] 388: CMIN -3.69 CAVG 0.18 CMAX 41.73 388: LSD 11.03 388: [2] xf_out->m_type = 9, xf_in->m_type = 0 388: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 388: bspline_xform_initialize 388: rdims = (5,5,5) 388: vox_per_rgn = (8,8,8) 388: cdims = (8 8 8) 388: ** Registration worker thread finished. 388: Writing transformation ... 388: Warping... 388: Running: plm_warp_native 388: Converting input image... 388: Converting xform... 388: bspline_xform_initialize 388: rdims = (5,5,5) 388: vox_per_rgn = (8,8,8) 388: cdims = (8 8 8) 388: Creating output vf... 388: Creating output volume... 388: Running native warper... 388: bspline_warp complete. 388: Back convert to original type... 388: > Convert vf to itk 388: > Conversion complete. 388: plm_warp_native is complete. 388: Saving image... 388: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-img.mha 388: Saving warped landmarks... 388: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-warped.fcsv 388: Saving vf... 388: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-vf.mha 388: Load: 0.189564 388: Run: 0.0993221 388: Save: 0.126219 388: Total: 0.415105 388: Finished! 388: 388: STDERR: 388: Not an error 122/578 Test #388: plm-bsp-landmark-e .................... Passed 1.36 sec test 415 Start 415: plm-reg-dv-itk-translation 415: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-dv-itk-translation" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 415: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 415: Test timeout computed to be: 1500 415: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 415: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation.txt 415: EXPECTED_ERRNO is 382: RETVAL: 0 382: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha 382: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha 382: Launching registration worker thread 382: Inside registration worker thread 382: Loading fixed landmarks: /build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv 382: Loading moving landmarks: /build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv 382: Doing registration stage 382: [1] xf_in->m_type = 0, xf_out->m_type = 0 382: RESAMPLE 1 1: (2 2 2), (2 2 2) 382: RESAMPLE 1 1: (2 2 2), (2 2 2) 382: volume_calc_grad complete. 382: bspline_xform_initialize 382: Warning: vox_per_rgn was less than 4. 382: Warning: vox_per_rgn was less than 4. 382: Warning: vox_per_rgn was less than 4. 382: rdims = (5,5,5) 382: vox_per_rgn = (4,4,4) 382: cdims = (8 8 8) 382: Algorithm flavor = h 382: Threading = 0 382: Landmarks: 8 fixed, 8 moving, lambda = 1.000000 382: >> Checking JH allocation 382: Computing landmark grid coordinates 382: image dc=-1 0 0 0 -1 0 0 0 1 382: image or=250 250 -236.842 382: image dm=19 19 19 382: [0], (-51.7821 -52.1629 46.0528) -> (11.467712 11.482183 10.750000) 382: [1], (52.5439 -52.1629 46.053) -> (7.503327 11.482183 10.750008) 382: [2], (53.3054 53.6862 46.053) -> (7.474390 7.459919 10.750008) 382: [3], (-52.5436 52.9247 46.053) -> (11.496650 7.488857 10.750008) 382: [4], (-52.5436 -52.1629 -46.0525) -> (11.496650 11.482183 7.250000) 382: [5], (53.3054 -51.7821 -46.053) -> (7.474390 11.467712 7.249981) 382: [6], (52.1632 53.3054 -46.053) -> (7.517794 7.474390 7.249981) 382: [7], (-52.9244 53.3054 -46.053) -> (11.511120 7.474390 7.249981) 382: BSPLINE PARMS 382: max_its = 5 382: max_feval = 5 382: BSPLINE XFORM HEADER 382: vox_per_rgn = 4 4 4 382: roi_offset = 0 0 0 382: roi_dim = 19 19 19 382: img_dc = -1 0 0 0 -1 0 0 0 1 382: BST METRICS 382: MET 110100 MSE 1.000000 382: Setting nmax, mmax = 1536 41 382: >>> START 382: This problem is unconstrained. 382: [ 0, 0] SCORE 1785.722 NV 6859 GM -104.585 GN 27.6 [ 0.033 s ] 382: MSE 1339.480 LM 446.242 382: CMIN 0.00 CAVG 0.00 CMAX 0.00 382: LSD 0.00 382: [ 0, 1] SCORE 1740.786 NV 6859 GM -103.163 GN 27.2 [ 0.021 s ] 382: MSE 1303.402 LM 437.384 382: CMIN -0.03 CAVG 0.00 CMAX 0.57 382: LSD 1.00 382: [ 0, 2] SCORE 1567.600 NV 6859 GM -97.477 GN 25.7 [ 0.021 s ] 382: MSE 1164.662 LM 402.938 382: CMIN -0.17 CAVG 0.01 CMAX 2.86 382: LSD 5.00 382: [ 0, 3] SCORE 979.240 NV 6859 GM -74.784 GN 19.7 [ 0.016 s ] 382: MSE 698.326 LM 280.914 382: CMIN -0.71 CAVG 0.05 CMAX 12.03 382: LSD 21.00 382: [ 1, 4] SCORE 118.835 NV 6859 GM 0.596 GN 3.68 [ 0.018 s ] 382: MSE 81.402 LM 37.433 382: CMIN -1.76 CAVG 0.19 CMAX 39.56 382: LSD 55.80 382: [ 2, 5] SCORE 69.736 NV 6859 GM 2.657 GN 2.64 [ 0.021 s ] 382: MSE 47.343 LM 22.393 382: CMIN -3.07 CAVG 0.19 CMAX 44.32 382: LSD 10.82 382: [2] xf_out->m_type = 9, xf_in->m_type = 0 382: Warping... 382: Running: plm_warp_native 382: Converting input image... 382: Converting xform... 382: bspline_xform_initialize 382: rdims = (5,5,5) 382: vox_per_rgn = (8,8,8) 382: cdims = (8 8 8) 382: Creating output vf... 382: Creating output volume... 382: Running native warper... 382: bspline_warp complete. 382: > Convert vf to itk 382: > Conversion complete. 382: plm_warp_native is complete. 382: Saving warped landmarks... 382: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-warped.fcsv 382: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 382: bspline_xform_initialize 382: rdims = (5,5,5) 382: vox_per_rgn = (8,8,8) 382: cdims = (8 8 8) 382: ** Registration worker thread finished. 382: Writing transformation ... 382: Warping... 382: Running: plm_warp_native 382: Converting input image... 382: Converting xform... 382: bspline_xform_initialize 382: rdims = (5,5,5) 382: vox_per_rgn = (8,8,8) 382: cdims = (8 8 8) 382: Creating output vf... 382: Creating output volume... 382: Running native warper... 382: bspline_warp complete. 382: Back convert to original type... 382: > Convert vf to itk 382: > Conversion complete. 382: plm_warp_native is complete. 382: Saving image... 382: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-img.mha 382: Saving vf... 382: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-vf.mha 382: Load: 0.320621 382: Run: 0.339941 382: Save: 0.119452 382: Total: 0.780014 382: Finished! 382: 382: STDERR: 382: Not an error 123/578 Test #382: plm-bsp-landmark-c .................... Passed 2.03 sec test 424 Start 424: plm-reg-process-a 424: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-process-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 424: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 424: Test timeout computed to be: 1500 385: RETVAL: 0 385: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha 385: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha 385: Launching registration worker thread 385: Inside registration worker thread 385: Doing registration stage 385: [1] xf_in->m_type = 0, xf_out->m_type = 0 385: RESAMPLE 1 1: (2 2 2), (2 2 2) 385: RESAMPLE 1 1: (2 2 2), (2 2 2) 385: volume_calc_grad complete. 385: bspline_xform_initialize 385: Warning: vox_per_rgn was less than 4. 385: Warning: vox_per_rgn was less than 4. 385: Warning: vox_per_rgn was less than 4. 385: rdims = (5,5,5) 385: vox_per_rgn = (4,4,4) 385: cdims = (8 8 8) 385: Algorithm flavor = h 385: Threading = 0 385: Landmarks: 8 fixed, 8 moving, lambda = 1.000000 385: >> Checking JH allocation 385: Computing landmark grid coordinates 385: image dc=-1 0 0 0 -1 0 0 0 1 385: image or=250 250 -236.842 385: image dm=19 19 19 385: [0], (-51.7821 -52.1629 46.0528) -> (11.467712 11.482183 10.750000) 385: [1], (52.5439 -52.1629 46.053) -> (7.503327 11.482183 10.750008) 385: [2], (53.3054 53.6862 46.053) -> (7.474390 7.459919 10.750008) 385: [3], (-52.5436 52.9247 46.053) -> (11.496650 7.488857 10.750008) 385: [4], (-52.5436 -52.1629 -46.0525) -> (11.496650 11.482183 7.250000) 385: [5], (53.3054 -51.7821 -46.053) -> (7.474390 11.467712 7.249981) 385: [6], (52.1632 53.3054 -46.053) -> (7.517794 7.474390 7.249981) 385: [7], (-52.9244 53.3054 -46.053) -> (11.511120 7.474390 7.249981) 385: BSPLINE PARMS 385: max_its = 5 385: max_feval = 5 385: BSPLINE XFORM HEADER 385: vox_per_rgn = 4 4 4 385: roi_offset = 0 0 0 385: roi_dim = 19 19 19 385: img_dc = -1 0 0 0 -1 0 0 0 1 385: BST METRICS 385: MET 110100 MSE 1.000000 385: Setting nmax, mmax = 1536 41 385: >>> START 385: This problem is unconstrained. 385: [ 0, 0] SCORE 1785.722 NV 6859 GM -104.585 GN 27.6 [ 0.041 s ] 385: MSE 1339.480 LM 446.242 385: CMIN 0.00 CAVG 0.00 CMAX 0.00 385: LSD 0.00 385: [ 0, 1] SCORE 1740.786 NV 6859 GM -103.163 GN 27.2 [ 0.024 s ] 385: MSE 1303.402 LM 437.384 385: CMIN -0.03 CAVG 0.00 CMAX 0.57 385: LSD 1.00 385: [ 0, 2] SCORE 1567.600 NV 6859 GM -97.477 GN 25.7 [ 0.024 s ] 385: MSE 1164.662 LM 402.938 385: CMIN -0.17 CAVG 0.01 CMAX 2.86 385: LSD 5.00 385: [ 0, 3] SCORE 979.240 NV 6859 GM -74.784 GN 19.7 [ 0.025 s ] 385: MSE 698.326 LM 280.914 385: CMIN -0.71 CAVG 0.05 CMAX 12.03 385: LSD 21.00 385: [ 1, 4] SCORE 118.835 NV 6859 GM 0.596 GN 3.68 [ 0.013 s ] 385: MSE 81.402 LM 37.433 385: CMIN -1.76 CAVG 0.19 CMAX 39.56 385: LSD 55.80 385: [ 2, 5] SCORE 69.736 NV 6859 GM 2.657 GN 2.64 [ 0.041 s ] 385: MSE 47.343 LM 22.393 385: CMIN -3.07 CAVG 0.19 CMAX 44.32 385: LSD 10.82 385: [2] xf_out->m_type = 9, xf_in->m_type = 0 385: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 385: bspline_xform_initialize 385: rdims = (5,5,5) 385: vox_per_rgn = (8,8,8) 385: cdims = (8 8 8) 385: ** Registration worker thread finished. 385: Writing transformation ... 385: Warping... 385: Running: plm_warp_native 385: Converting input image... 385: Converting xform... 385: bspline_xform_initialize 385: rdims = (5,5,5) 385: vox_per_rgn = (8,8,8) 385: cdims = (8 8 8) 385: Creating output vf... 385: Creating output volume... 385: Running native warper... 385: bspline_warp complete. 385: Back convert to original type... 385: > Convert vf to itk 385: > Conversion complete. 385: plm_warp_native is complete. 385: Saving image... 385: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-img.mha 385: Saving vf... 385: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-vf.mha 385: Load: 0.267662 385: Run: 0.228756 385: Save: 0.117974 385: Total: 0.614392 385: Finished! 385: 385: STDERR: 385: Not an error 124/578 Test #385: plm-bsp-landmark-d .................... Passed 1.77 sec test 427 Start 427: plm-reg-trans-a 427: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 427: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 427: Test timeout computed to be: 1500 424: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 424: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.txt 424: EXPECTED_ERRNO is 427: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 427: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.txt 427: EXPECTED_ERRNO is 372: RETVAL: 0 372: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha 372: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha 372: Launching registration worker thread 372: Inside registration worker thread 372: Doing registration stage 372: [1] xf_in->m_type = 0, xf_out->m_type = 0 372: RESAMPLE 1 1: (1 1 1), (1 1 1) 372: RESAMPLE 1 1: (1 1 1), (1 1 1) 372: volume_calc_grad complete. 372: bspline_xform_initialize 372: Warning: vox_per_rgn was less than 4. 372: Warning: vox_per_rgn was less than 4. 372: Warning: vox_per_rgn was less than 4. 372: rdims = (10,10,10) 372: vox_per_rgn = (4,4,4) 372: cdims = (13 13 13) 372: Algorithm flavor = g 372: Threading = 0 372: Regularization: flavor = c lambda = 1.000000 372: Regularizer initialized 372: >> Checking JH allocation 372: BSPLINE PARMS 372: max_its = 5 372: max_feval = 5 372: BSPLINE XFORM HEADER 372: vox_per_rgn = 4 4 4 372: roi_offset = 0 0 0 372: roi_dim = 38 38 38 372: img_dc = 1 0 0 0 1 0 0 0 1 372: BST METRICS 372: MET 110100 MSE 1.000000 372: Setting nmax, mmax = 6591 83 372: >>> START 372: This problem is unconstrained. 372: [ 0, 0] SCORE 5540.166 NV 54872 GM 0.000 GN 28.2 [ 0.287 s ] 372: MSE 5540.166 RM 0.000 [ 0.058 | 0.230 ] 372: CMIN 0.00 CAVG 0.00 CMAX 0.00 372: LSD 0.00 372: [ 0, 1] SCORE 5484.176 NV 54872 GM 0.045 GN 27.7 [ 0.307 s ] 372: MSE 5484.124 RM 0.052 [ 0.063 | 0.245 ] 372: CMIN -0.16 CAVG -0.00 CMAX 0.22 372: LSD 1.00 372: [ 0, 2] SCORE 5267.543 NV 54872 GM 0.224 GN 25.9 [ 0.261 s ] 372: MSE 5266.236 RM 1.307 [ 0.043 | 0.218 ] 372: CMIN -0.81 CAVG 0.00 CMAX 1.12 372: LSD 5.00 372: [ 0, 3] SCORE 4507.597 NV 54872 GM 0.928 GN 18.7 [ 0.250 s ] 372: MSE 4484.536 RM 23.060 [ 0.048 | 0.202 ] 372: CMIN -3.39 CAVG 0.00 CMAX 4.70 372: LSD 21.00 372: [ 1, 4] SCORE 3149.129 NV 54872 GM 4.968 GN 2.36 [ 0.303 s ] 372: MSE 2955.678 RM 193.451 [ 0.059 | 0.243 ] 372: CMIN -10.06 CAVG -0.00 CMAX 13.65 372: LSD 42.53 372: [ 2, 5] SCORE 3079.150 NV 54872 GM -1.061 GN 2.72 [ 0.309 s ] 372: MSE 2880.344 RM 198.806 [ 0.035 | 0.274 ] 372: CMIN -10.75 CAVG -0.00 CMAX 13.43 372: LSD 6.23 372: [2] xf_out->m_type = 9, xf_in->m_type = 0 372: ** Registration worker thread finished. 372: Writing transformation ... 372: Warping... 372: Running: plm_warp_native 372: Converting input image... 372: Converting xform... 372: bspline_xform_initialize 372: rdims = (10,10,10) 372: vox_per_rgn = (4,4,4) 372: cdims = (13 13 13) 372: Creating output vf... 372: Creating output volume... 372: Running native warper... 372: bspline_warp complete. 372: Back convert to original type... 372: > Convert vf to itk 372: > Conversion complete. 372: plm_warp_native is complete. 372: Saving image... 372: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-img.mha 372: Saving vf... 372: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-vf.mha 372: Load: 0.195891 372: Run: 1.75987 372: Save: 0.139565 372: Total: 2.09532 372: Finished! 372: 372: STDERR: 372: Not an error 125/578 Test #372: plm-bsp-regularize-analytic ........... Passed 2.76 sec test 430 Start 430: plm-reg-trans-b 430: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 430: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 430: Test timeout computed to be: 1500 397: RETVAL: 0 397: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha 397: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha 397: Launching registration worker thread 397: Inside registration worker thread 397: Doing registration stage 397: [1] xf_in->m_type = 0, xf_out->m_type = 0 397: RESAMPLE 1 1: (2 2 2), (2 2 2) 397: RESAMPLE 1 1: (2 2 2), (2 2 2) 397: volume_calc_grad complete. 397: bspline_xform_initialize 397: Warning: vox_per_rgn was less than 4. 397: Warning: vox_per_rgn was less than 4. 397: Warning: vox_per_rgn was less than 4. 397: rdims = (5,5,5) 397: vox_per_rgn = (4,4,4) 397: cdims = (8 8 8) 397: Algorithm flavor = c 397: Threading = 0 397: >> Checking JH allocation 397: BSPLINE PARMS 397: max_its = 5 397: max_feval = 5 397: BSPLINE XFORM HEADER 397: vox_per_rgn = 4 4 4 397: roi_offset = 0 0 0 397: roi_dim = 19 19 19 397: img_dc = 1 0 0 0 1 0 0 0 1 397: BST METRICS 397: MET 110100 MSE 1.000000 397: Setting nmax, mmax = 1536 41 397: >>> START 397: This problem is unconstrained. 397: [ 0, 0] MSE 1969.041 NV 5719 GM 151.518 GN 29 [ 0.024 s ] 397: CMIN 0.00 CAVG 0.00 CMAX 0.00 397: LSD 0.00 397: [ 0, 1] MSE 1948.894 NV 5719 GM 150.797 GN 28.8 [ 0.017 s ] 397: CMIN -0.42 CAVG -0.00 CMAX 0.04 397: LSD 1.00 397: [ 0, 2] MSE 1873.203 NV 5719 GM 152.313 GN 29.2 [ 0.036 s ] 397: CMIN -2.08 CAVG -0.02 CMAX 0.22 397: LSD 5.00 397: [ 0, 3] MSE 1636.132 NV 5719 GM 148.988 GN 28.8 [ 0.024 s ] 397: CMIN -8.76 CAVG -0.07 CMAX 0.93 397: LSD 21.00 397: [ 0, 4] MSE 1351.435 NV 5719 GM 79.113 GN 23.8 [ 0.016 s ] 397: CMIN -35.44 CAVG -0.29 CMAX 3.78 397: LSD 85.00 397: [ 1, 5] MSE 6291.440 NV 5719 GM -73.340 GN 33.2 [ 0.024 s ] 397: CMIN -126.28 CAVG -0.93 CMAX 14.98 397: LSD 199.65 397: [2] xf_out->m_type = 9, xf_in->m_type = 0 397: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 397: bspline_xform_initialize 397: rdims = (5,5,5) 397: vox_per_rgn = (8,8,8) 397: cdims = (8 8 8) 397: ** Registration worker thread finished. 397: Writing transformation ... 397: Warping... 397: Running: plm_warp_native 397: Converting input image... 397: Converting xform... 397: bspline_xform_initialize 397: rdims = (5,5,5) 397: vox_per_rgn = (8,8,8) 397: cdims = (8 8 8) 397: Creating output vf... 397: Creating output volume... 397: Running native warper... 397: bspline_warp complete. 397: Back convert to original type... 397: > Convert vf to itk 397: > Conversion complete. 397: plm_warp_native is complete. 397: Saving image... 397: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-img.nrrd 397: Saving vf... 397: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-vf.nrrd 397: Load: 0.28396 397: Run: 0.189609 397: Save: 0.405763 397: Total: 0.879332 397: Finished! 397: 397: STDERR: 397: Not an error 126/578 Test #397: plm-bsp-dcos-c ........................ Passed 1.95 sec test 433 Start 433: plm-reg-trans-mi-a 433: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-mi-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 433: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 433: Test timeout computed to be: 1500 430: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 430: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.txt 430: EXPECTED_ERRNO is 433: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 433: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.txt 433: EXPECTED_ERRNO is 403: RETVAL: 0 403: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha 403: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha 403: Launching registration worker thread 403: Inside registration worker thread 403: Doing registration stage 403: [1] xf_in->m_type = 0, xf_out->m_type = 0 403: RESAMPLE 1 1: (2 2 2), (2 2 2) 403: RESAMPLE 1 1: (2 2 2), (2 2 2) 403: volume_calc_grad complete. 403: bspline_xform_initialize 403: Warning: vox_per_rgn was less than 4. 403: Warning: vox_per_rgn was less than 4. 403: Warning: vox_per_rgn was less than 4. 403: rdims = (5,5,5) 403: vox_per_rgn = (4,4,4) 403: cdims = (8 8 8) 403: Algorithm flavor = h 403: Threading = 0 403: >> Checking JH allocation 403: BSPLINE PARMS 403: max_its = 5 403: max_feval = 5 403: BSPLINE XFORM HEADER 403: vox_per_rgn = 4 4 4 403: roi_offset = 0 0 0 403: roi_dim = 19 19 19 403: img_dc = 1 0 0 0 1 0 0 0 1 403: BST METRICS 403: MET 110100 MSE 1.000000 403: Setting nmax, mmax = 1536 41 403: >>> START 403: This problem is unconstrained. 403: [ 0, 0] MSE 1969.037 NV 5719 GM 151.518 GN 29 [ 0.028 s ] 403: CMIN 0.00 CAVG 0.00 CMAX 0.00 403: LSD 0.00 403: [ 0, 1] MSE 1948.891 NV 5719 GM 150.797 GN 28.8 [ 0.028 s ] 403: CMIN -0.42 CAVG -0.00 CMAX 0.04 403: LSD 1.00 403: [ 0, 2] MSE 1873.200 NV 5719 GM 152.313 GN 29.2 [ 0.036 s ] 403: CMIN -2.08 CAVG -0.02 CMAX 0.22 403: LSD 5.00 403: [ 0, 3] MSE 1636.130 NV 5719 GM 148.988 GN 28.8 [ 0.037 s ] 403: CMIN -8.76 CAVG -0.07 CMAX 0.93 403: LSD 21.00 403: [ 0, 4] MSE 1351.434 NV 5719 GM 79.112 GN 23.8 [ 0.010 s ] 403: CMIN -35.44 CAVG -0.29 CMAX 3.78 403: LSD 85.00 403: [ 1, 5] MSE 6291.438 NV 5719 GM -73.340 GN 33.2 [ 0.004 s ] 403: CMIN -126.28 CAVG -0.93 CMAX 14.98 403: LSD 199.65 403: [2] xf_out->m_type = 9, xf_in->m_type = 0 403: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 403: bspline_xform_initialize 403: rdims = (5,5,5) 403: vox_per_rgn = (8,8,8) 403: cdims = (8 8 8) 403: ** Registration worker thread finished. 403: Writing transformation ... 403: Warping... 403: Running: plm_warp_native 403: Converting input image... 403: Converting xform... 403: bspline_xform_initialize 403: rdims = (5,5,5) 403: vox_per_rgn = (8,8,8) 403: cdims = (8 8 8) 403: Creating output vf... 403: Creating output volume... 403: Running native warper... 403: bspline_warp complete. 403: Back convert to original type... 403: > Convert vf to itk 403: > Conversion complete. 403: plm_warp_native is complete. 403: Saving image... 403: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-img.nrrd 403: Saving vf... 403: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-vf.nrrd 403: Load: 0.197932 403: Run: 0.211479 403: Save: 0.235907 403: Total: 0.645318 403: Finished! 403: 403: STDERR: 403: Not an error 127/578 Test #403: plm-bsp-dcos-e ........................ Passed 1.80 sec test 436 Start 436: plm-reg-autores-a 436: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 436: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 436: Test timeout computed to be: 1500 394: RETVAL: 0 394: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha 394: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha 394: Launching registration worker thread 394: Inside registration worker thread 394: Doing registration stage 394: [1] xf_in->m_type = 0, xf_out->m_type = 0 394: RESAMPLE 1 1: (2 2 2), (2 2 2) 394: RESAMPLE 1 1: (2 2 2), (2 2 2) 394: volume_calc_grad complete. 394: bspline_xform_initialize 394: Warning: vox_per_rgn was less than 4. 394: Warning: vox_per_rgn was less than 4. 394: Warning: vox_per_rgn was less than 4. 394: rdims = (5,5,5) 394: vox_per_rgn = (4,4,4) 394: cdims = (8 8 8) 394: Algorithm flavor = g 394: Threading = 0 394: >> Checking JH allocation 394: BSPLINE PARMS 394: max_its = 5 394: max_feval = 5 394: BSPLINE XFORM HEADER 394: vox_per_rgn = 4 4 4 394: roi_offset = 0 0 0 394: roi_dim = 19 19 19 394: img_dc = 0.894427 0.447214 0 -0.447214 0.894427 0 0 0 1 394: BST METRICS 394: MET 110100 MSE 1.000000 394: Setting nmax, mmax = 1536 41 394: >>> START 394: This problem is unconstrained. 394: [ 0, 0] MSE 2326.657 NV 5814 GM -90.046 GN 30.1 [ 0.073 s ] 394: CMIN 0.00 CAVG 0.00 CMAX 0.00 394: LSD 0.00 394: [ 0, 1] MSE 2292.385 NV 5814 GM -88.991 GN 29.8 [ 0.055 s ] 394: CMIN -0.09 CAVG 0.00 CMAX 0.49 394: LSD 1.00 394: [ 0, 2] MSE 2160.182 NV 5814 GM -88.027 GN 29.4 [ 0.066 s ] 394: CMIN -0.46 CAVG 0.01 CMAX 2.46 394: LSD 5.00 394: [ 0, 3] MSE 1684.673 NV 5814 GM -70.229 GN 24.2 [ 0.046 s ] 394: CMIN -1.93 CAVG 0.04 CMAX 10.33 394: LSD 21.00 394: [ 1, 4] MSE 880.232 NV 5809 GM 22.704 GN 11.1 [ 0.024 s ] 394: CMIN -14.50 CAVG 0.20 CMAX 61.00 394: LSD 95.90 394: [ 2, 5] MSE 621.998 NV 5814 GM 5.047 GN 4.55 [ 0.063 s ] 394: CMIN -12.15 CAVG 0.16 CMAX 47.74 394: LSD 26.24 394: [2] xf_out->m_type = 9, xf_in->m_type = 0 394: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 394: bspline_xform_initialize 394: rdims = (5,5,5) 394: vox_per_rgn = (8,8,8) 394: cdims = (8 8 8) 394: ** Registration worker thread finished. 394: Writing transformation ... 394: Warping... 394: Running: plm_warp_native 394: Converting input image... 394: Converting xform... 394: bspline_xform_initialize 394: rdims = (5,5,5) 394: vox_per_rgn = (8,8,8) 394: cdims = (8 8 8) 394: Creating output vf... 394: Creating output volume... 394: Running native warper... 394: bspline_warp complete. 394: Back convert to original type... 394: > Convert vf to itk 394: > Conversion complete. 394: plm_warp_native is complete. 394: Saving image... 394: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-img.nrrd 394: Saving vf... 394: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-vf.nrrd 394: Load: 0.254555 394: Run: 0.36309 394: Save: 0.237542 394: Total: 0.855187 394: Finished! 394: 394: STDERR: 394: Not an error 128/578 Test #394: plm-bsp-dcos-b ........................ Passed 2.10 sec test 439 Start 439: plm-reg-autores-b 439: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 439: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 439: Test timeout computed to be: 1500 436: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 436: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.txt 436: EXPECTED_ERRNO is 391: RETVAL: 0 391: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha 391: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha 391: Launching registration worker thread 391: Inside registration worker thread 391: Doing registration stage 391: [1] xf_in->m_type = 0, xf_out->m_type = 0 391: RESAMPLE 1 1: (2 2 2), (2 2 2) 391: RESAMPLE 1 1: (2 2 2), (2 2 2) 391: volume_calc_grad complete. 391: bspline_xform_initialize 391: Warning: vox_per_rgn was less than 4. 391: Warning: vox_per_rgn was less than 4. 391: Warning: vox_per_rgn was less than 4. 391: rdims = (5,5,5) 391: vox_per_rgn = (4,4,4) 391: cdims = (8 8 8) 391: Algorithm flavor = g 391: Threading = 0 391: >> Checking JH allocation 391: BSPLINE PARMS 391: max_its = 5 391: max_feval = 5 391: BSPLINE XFORM HEADER 391: vox_per_rgn = 4 4 4 391: roi_offset = 0 0 0 391: roi_dim = 19 19 19 391: img_dc = 1 0 0 0 1 0 0 0 1 391: BST METRICS 391: MET 110100 MSE 1.000000 391: Setting nmax, mmax = 1536 41 391: >>> START 391: This problem is unconstrained. 391: [ 0, 0] MSE 1969.037 NV 5719 GM 151.518 GN 29 [ 0.092 s ] 391: CMIN 0.00 CAVG 0.00 CMAX 0.00 391: LSD 0.00 391: [ 0, 1] MSE 1948.891 NV 5719 GM 150.797 GN 28.8 [ 0.064 s ] 391: CMIN -0.42 CAVG -0.00 CMAX 0.04 391: LSD 1.00 391: [ 0, 2] MSE 1873.200 NV 5719 GM 152.313 GN 29.2 [ 0.048 s ] 391: CMIN -2.08 CAVG -0.02 CMAX 0.22 391: LSD 5.00 391: [ 0, 3] MSE 1636.130 NV 5719 GM 148.988 GN 28.8 [ 0.036 s ] 391: CMIN -8.76 CAVG -0.07 CMAX 0.93 391: LSD 21.00 391: [ 0, 4] MSE 1351.434 NV 5719 GM 79.112 GN 23.8 [ 0.072 s ] 391: CMIN -35.44 CAVG -0.29 CMAX 3.78 391: LSD 85.00 391: [ 1, 5] MSE 6291.438 NV 5719 GM -73.340 GN 33.2 [ 0.068 s ] 391: CMIN -126.28 CAVG -0.93 CMAX 14.98 391: LSD 199.65 391: [2] xf_out->m_type = 9, xf_in->m_type = 0 391: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 391: bspline_xform_initialize 391: rdims = (5,5,5) 391: vox_per_rgn = (8,8,8) 391: cdims = (8 8 8) 391: ** Registration worker thread finished. 391: Writing transformation ... 391: Warping... 391: Running: plm_warp_native 391: Converting input image... 391: Converting xform... 391: bspline_xform_initialize 391: rdims = (5,5,5) 391: vox_per_rgn = (8,8,8) 391: cdims = (8 8 8) 391: Creating output vf... 391: Creating output volume... 391: Running native warper... 391: bspline_warp complete. 391: Back convert to original type... 391: > Convert vf to itk 391: > Conversion complete. 391: plm_warp_native is complete. 391: Saving image... 391: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-img.nrrd 391: Saving vf... 391: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-vf.nrrd 391: Load: 0.293679 391: Run: 0.447398 391: Save: 0.352206 391: Total: 1.09328 391: Finished! 391: 391: STDERR: 391: Not an error 129/578 Test #391: plm-bsp-dcos-a ........................ Passed 2.20 sec test 444 Start 444: plm-compose-a 444: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-xf.txt;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 444: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 444: Test timeout computed to be: 1500 406: RETVAL: 0 406: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha 406: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha 406: Launching registration worker thread 406: Inside registration worker thread 406: Doing registration stage 406: [1] xf_in->m_type = 0, xf_out->m_type = 0 406: RESAMPLE 1 1: (2 2 2), (2 2 2) 406: RESAMPLE 1 1: (2 2 2), (2 2 2) 406: volume_calc_grad complete. 406: bspline_xform_initialize 406: Warning: vox_per_rgn was less than 4. 406: Warning: vox_per_rgn was less than 4. 406: Warning: vox_per_rgn was less than 4. 406: rdims = (5,5,5) 406: vox_per_rgn = (4,4,4) 406: cdims = (8 8 8) 406: Algorithm flavor = h 406: Threading = 0 406: >> Checking JH allocation 406: BSPLINE PARMS 406: max_its = 5 406: max_feval = 5 406: BSPLINE XFORM HEADER 406: vox_per_rgn = 4 4 4 406: roi_offset = 0 0 0 406: roi_dim = 19 19 19 406: img_dc = 0.894427 0.447214 0 -0.447214 0.894427 0 0 0 1 406: BST METRICS 406: MET 110100 MSE 1.000000 406: Setting nmax, mmax = 1536 41 406: >>> START 406: This problem is unconstrained. 406: [ 0, 0] MSE 2326.657 NV 5814 GM -90.046 GN 30.1 [ 0.033 s ] 406: CMIN 0.00 CAVG 0.00 CMAX 0.00 406: LSD 0.00 406: [ 0, 1] MSE 2292.385 NV 5814 GM -88.991 GN 29.8 [ 0.024 s ] 406: CMIN -0.09 CAVG 0.00 CMAX 0.49 406: LSD 1.00 406: [ 0, 2] MSE 2160.182 NV 5814 GM -88.027 GN 29.4 [ 0.032 s ] 406: CMIN -0.46 CAVG 0.01 CMAX 2.46 406: LSD 5.00 406: [ 0, 3] MSE 1684.673 NV 5814 GM -70.229 GN 24.2 [ 0.024 s ] 406: CMIN -1.93 CAVG 0.04 CMAX 10.33 406: LSD 21.00 406: [ 1, 4] MSE 880.232 NV 5809 GM 22.704 GN 11.1 [ 0.028 s ] 406: CMIN -14.50 CAVG 0.20 CMAX 61.00 406: LSD 95.90 406: [ 2, 5] MSE 621.998 NV 5814 GM 5.047 GN 4.55 [ 0.024 s ] 406: CMIN -12.15 CAVG 0.16 CMAX 47.74 406: LSD 26.24 406: [2] xf_out->m_type = 9, xf_in->m_type = 0 406: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 406: bspline_xform_initialize 406: rdims = (5,5,5) 406: vox_per_rgn = (8,8,8) 406: cdims = (8 8 8) 406: ** Registration worker thread finished. 406: Writing transformation ... 406: Warping... 406: Running: plm_warp_native 406: Converting input image... 406: Converting xform... 406: bspline_xform_initialize 406: rdims = (5,5,5) 406: vox_per_rgn = (8,8,8) 406: cdims = (8 8 8) 406: Creating output vf... 406: Creating output volume... 406: Running native warper... 406: bspline_warp complete. 406: Back convert to original type... 406: > Convert vf to itk 406: > Conversion complete. 406: plm_warp_native is complete. 406: Saving image... 406: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-img.nrrd 406: Saving vf... 406: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-vf.nrrd 406: Load: 0.273369 406: Run: 0.22791 406: Save: 0.165114 406: Total: 0.666393 406: Finished! 406: 406: STDERR: 406: Not an error 130/578 Test #406: plm-bsp-dcos-f ........................ Passed 1.79 sec test 448 Start 448: plm-compose-b 448: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-vf.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 448: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 448: Test timeout computed to be: 1500 439: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 439: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.txt 439: EXPECTED_ERRNO is 444: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 444: PARMS is compose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-xf.txt;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha 444: EXPECTED_ERRNO is 400: RETVAL: 0 400: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha 400: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha 400: Launching registration worker thread 400: Inside registration worker thread 400: Doing registration stage 400: [1] xf_in->m_type = 0, xf_out->m_type = 0 400: RESAMPLE 1 1: (2 2 2), (2 2 2) 400: RESAMPLE 1 1: (2 2 2), (2 2 2) 400: volume_calc_grad complete. 400: bspline_xform_initialize 400: Warning: vox_per_rgn was less than 4. 400: Warning: vox_per_rgn was less than 4. 400: Warning: vox_per_rgn was less than 4. 400: rdims = (5,5,5) 400: vox_per_rgn = (4,4,4) 400: cdims = (8 8 8) 400: Algorithm flavor = c 400: Threading = 0 400: >> Checking JH allocation 400: BSPLINE PARMS 400: max_its = 5 400: max_feval = 5 400: BSPLINE XFORM HEADER 400: vox_per_rgn = 4 4 4 400: roi_offset = 0 0 0 400: roi_dim = 19 19 19 400: img_dc = 0.894427 0.447214 0 -0.447214 0.894427 0 0 0 1 400: BST METRICS 400: MET 110100 MSE 1.000000 400: Setting nmax, mmax = 1536 41 400: >>> START 400: This problem is unconstrained. 400: [ 0, 0] MSE 2326.658 NV 5814 GM -90.046 GN 30.1 [ 0.017 s ] 400: CMIN 0.00 CAVG 0.00 CMAX 0.00 400: LSD 0.00 400: [ 0, 1] MSE 2292.385 NV 5814 GM -88.991 GN 29.8 [ 0.024 s ] 400: CMIN -0.09 CAVG 0.00 CMAX 0.49 400: LSD 1.00 400: [ 0, 2] MSE 2160.182 NV 5814 GM -88.027 GN 29.4 [ 0.020 s ] 400: CMIN -0.46 CAVG 0.01 CMAX 2.46 400: LSD 5.00 400: [ 0, 3] MSE 1684.673 NV 5814 GM -70.229 GN 24.2 [ 0.024 s ] 400: CMIN -1.93 CAVG 0.04 CMAX 10.33 400: LSD 21.00 400: [ 1, 4] MSE 880.230 NV 5809 GM 22.704 GN 11.1 [ 0.015 s ] 400: CMIN -14.50 CAVG 0.20 CMAX 61.00 400: LSD 95.90 400: [ 2, 5] MSE 621.998 NV 5814 GM 5.047 GN 4.55 [ 0.013 s ] 400: CMIN -12.15 CAVG 0.16 CMAX 47.74 400: LSD 26.24 400: [2] xf_out->m_type = 9, xf_in->m_type = 0 400: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 400: bspline_xform_initialize 400: rdims = (5,5,5) 400: vox_per_rgn = (8,8,8) 400: cdims = (8 8 8) 400: ** Registration worker thread finished. 400: Writing transformation ... 400: Warping... 400: Running: plm_warp_native 400: Converting input image... 400: Converting xform... 400: bspline_xform_initialize 400: rdims = (5,5,5) 400: vox_per_rgn = (8,8,8) 400: cdims = (8 8 8) 400: Creating output vf... 400: Creating output volume... 400: Running native warper... 400: bspline_warp complete. 400: Back convert to original type... 400: > Convert vf to itk 400: > Conversion complete. 400: plm_warp_native is complete. 400: Saving image... 400: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-img.nrrd 400: Saving vf... 400: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-vf.nrrd 400: Load: 0.356051 400: Run: 0.180444 400: Save: 0.204609 400: Total: 0.741104 400: Finished! 400: 400: STDERR: 400: Not an error 448: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 448: PARMS is compose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-vf.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha 448: EXPECTED_ERRNO is 131/578 Test #400: plm-bsp-dcos-d ........................ Passed 2.10 sec test 452 Start 452: plm-compose-c 452: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-xf.txt;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 452: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 452: Test timeout computed to be: 1500 452: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 452: PARMS is compose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-xf.txt;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha 452: EXPECTED_ERRNO is 415: RETVAL: 0 415: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 415: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 415: Launching registration worker thread 415: Inside registration worker thread 415: Doing registration stage 415: [1] xf_in->m_type = 0, xf_out->m_type = 0 415: Fixed image for this stage: 415: Dim = 19 19 19 415: Origin = -24.3421 -24.3421 -24.3421 415: Spacing = 2.63158 2.63158 2.63158 415: Direction Cosines = 415: 1 0 0 415: 0 1 0 415: 0 0 1 415: Moving image for this stage: 415: Dim = 19 19 19 415: Origin = -24.3421 -24.3421 -24.3421 415: Spacing = 2.63158 2.63158 2.63158 415: Direction Cosines = 415: 1 0 0 415: 0 1 0 415: 0 0 1 415: Initial Parameters = [0, 0, 0] 415: Starting ITK registration 415: StartEvent: [0, 0, 0] 415: MSE [ 0, 0,10.00] 18756.235 [9.999997615028182, -0.004883617032987221, -0.004883617032987353] 415: :: [0, 0, 0] 415: * 415: MSE [ 1, 1, 5.00] 1.116 [5.318441699151527, 1.2366948554205817, 1.2366948554205934] -18755.12 415: :: [9.999997615028182, -0.004883617032987221, -0.004883617032987353] 415: * 415: MSE [ 2, 2, 2.50] 5544.602 [7.61065194008583, 0.5310844064631239, 0.5310844064631283] 5543.49 415: MSE [ 3, 3, 2.50] 1453.699 [9.961460585442484, -0.07045474975050192, -0.07045474975050381] -4090.90 415: MSE [ 4, 4, 1.25] 4.252 [10.130622373667528, 0.8052975809356612, 0.8052975809356663] -1449.45 415: EndEvent: [10.130622373667528, 0.8052975809356612, 0.8052975809356663] 415: RegularStepGradientDescentOptimizer: Maximum number of iterations (5) exceeded. 415: ITK registration complete 415: [2] xf_out->m_type = 1, xf_in->m_type = 0 415: ** Registration worker thread finished. 415: Writing transformation ... 415: Warping... 415: plm_warp_itk: xform_to_itk_vf 415: plm_warp_itk: convert_to_itk 415: plm_warp_itk: warping... 415: Saving image... 415: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-img.nrrd 415: Saving vf... 415: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-vf.nrrd 415: Load: 0.130809 415: Run: 0.131888 415: Save: 0.074949 415: Total: 0.337646 415: Finished! 415: 415: STDERR: 415: Not an error 132/578 Test #415: plm-reg-dv-itk-translation ............ Passed 1.38 sec test 456 Start 456: plm-resample-a 456: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=resample;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha;--output-type;float;--subsample;2 2 2" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 456: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 456: Test timeout computed to be: 1500 298: RETVAL: 0 298: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 298: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 298: Launching registration worker thread 298: Inside registration worker thread 298: Doing registration stage 298: [1] xf_in->m_type = 0, xf_out->m_type = 0 298: Fixed image for this stage: 298: Dim = 38 38 38 298: Origin = -25 -25 -25 298: Spacing = 1.31579 1.31579 1.31579 298: Direction Cosines = 298: 1 0 0 298: 0 1 0 298: 0 0 1 298: Moving image for this stage: 298: Dim = 38 38 38 298: Origin = -25 -25 -25 298: Spacing = 1.31579 1.31579 1.31579 298: Direction Cosines = 298: 1 0 0 298: 0 1 0 298: 0 0 1 298: Starting ITK registration 298: StartEvent: 298: MSE [ 0, 0] 18945.891 [ 0.456 secs] 298: MSE [ 0, 1] 18140.496 [ 0.304 secs] 298: MSE [ 0, 2] 14979.440 [ 0.392 secs] 298: MSE [ 0, 3] 5390.861 [ 0.360 secs] 298: MSE [ 0, 4,319.84] 5390.861 * 298: MSE [ 1, 5] 4259.522 [ 0.360 secs] 298: MSE [ 1, 6,313.58] 4259.522 -1131.34 * 298: MSE [ 2, 7] 465.644 [ 0.296 secs] 298: MSE [ 2, 8,36.78] 465.644 -3793.88 * 298: MSE [ 3, 9] 382.530 [ 0.348 secs] 298: MSE [ 3, 10,21.77] 382.530 -83.11 * 298: MSE [ 4, 11] 289.494 [ 0.404 secs] 298: MSE [ 4, 12,13.35] 289.494 -93.04 * 298: MSE [ 5, 13] 226.103 [ 0.303 secs] 298: MSE [ 5, 14,21.50] 226.103 -63.39 * 298: EndEvent: 298: Too many iterations. Iterations = 6 298: LBFGSBOptimizer: 298: ITK registration complete 298: [2] xf_out->m_type = 6, xf_in->m_type = 0 298: ** Registration worker thread finished. 298: Writing transformation ... 298: Warping... 298: plm_warp_itk: xform_to_itk_vf 298: plm_warp_itk: convert_to_itk 298: plm_warp_itk: warping... 298: Saving image... 298: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-img.mha 298: Saving vf... 298: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-vf.mha 298: Load: 0.0884478 298: Run: 3.71532 298: Save: 0.510505 298: Total: 4.31427 298: Finished! 298: 298: STDERR: 298: Not an error 133/578 Test #298: plm-reg-itk-bspline ................... Passed 4.80 sec test 459 Start 459: plm-resample-b 459: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=resample;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha;--output-type;float;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 459: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 459: Test timeout computed to be: 1500 456: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 456: PARMS is resample;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha;--output-type;float;--subsample;2 2 2 456: EXPECTED_ERRNO is 444: RETVAL: 0 444: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha 444: Finished! 444: 444: STDERR: 444: Not an error 134/578 Test #444: plm-compose-a ......................... Passed 0.55 sec test 462 Start 462: plm-resample-c 462: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=resample;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-vf.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 462: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 462: Test timeout computed to be: 1500 459: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 459: PARMS is resample;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha;--output-type;float;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha 459: EXPECTED_ERRNO is 424: RETVAL: 0 424: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 424: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 424: Launching registration worker thread 424: Inside registration worker thread 424: *** Executing adjust process *** 424: ** Registration worker thread finished. 424: Warping... 424: plm_warp_itk: xform_to_itk_vf 424: plm_warp_itk: convert_to_itk 424: plm_warp_itk: warping... 424: Saving image... 424: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.mha 424: Load: 0.177724 424: Run: 0.0714319 424: Save: 0.0257299 424: Total: 0.274886 424: Finished! 424: 424: STDERR: 424: Not an error 135/578 Test #424: plm-reg-process-a ..................... Passed 1.26 sec test 465 Start 465: plm-scale-a 465: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-scale-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=scale;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd;--weight;0.4;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 465: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 465: Test timeout computed to be: 1500 462: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 462: PARMS is resample;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-vf.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha 462: EXPECTED_ERRNO is 465: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 465: PARMS is scale;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd;--weight;0.4;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha 465: EXPECTED_ERRNO is 439: RETVAL: 0 439: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 439: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 439: Launching registration worker thread 439: Inside registration worker thread 439: Doing registration stage 439: [1] xf_in->m_type = 0, xf_out->m_type = 0 439: RESAMPLE 3 1: (0.5 0.5 0.5), (0.5 0.5 0.5) 439: RESAMPLE 3 1: (0.5 0.5 0.5), (0.5 0.5 0.5) 439: volume_calc_grad complete. 439: Computing grid search extent. 439: Dimension 0, mo=0.8 F=(-25, 51.2465) M=(-25, 51.2465) 439: Dimension 1, mo=0.8 F=(-25, 51.2465) M=(-25, 51.2465) 439: Dimension 2, mo=0.8 F=(-25, 51.2465) M=(-25, 51.2465) 439: Native grid search extent: (-10.2493, 10.2493), (-10.2493, 10.2493), (-10.2493, 10.2493) 439: [0 0 0] 17568.3 * 439: Global grid search 439: [-10.2493 -10.2493 -10.2493] 102040 439: [-6.14958 -10.2493 -10.2493] 87035.1 439: [-2.04986 -10.2493 -10.2493] 73504.3 439: [2.04986 -10.2493 -10.2493] 61973.2 439: [6.14958 -10.2493 -10.2493] 57083.1 439: [10.2493 -10.2493 -10.2493] 60324.8 439: [-10.2493 -6.14958 -10.2493] 86358.6 439: [-6.14958 -6.14958 -10.2493] 71329.7 439: [-2.04986 -6.14958 -10.2493] 57402.6 439: [2.04986 -6.14958 -10.2493] 45155 439: [6.14958 -6.14958 -10.2493] 38807.6 439: [10.2493 -6.14958 -10.2493] 39786.3 439: [-10.2493 -2.04986 -10.2493] 79223.6 439: [-6.14958 -2.04986 -10.2493] 64102 439: [-2.04986 -2.04986 -10.2493] 49890.5 439: [2.04986 -2.04986 -10.2493] 37200.4 439: [6.14958 -2.04986 -10.2493] 30089.3 439: [10.2493 -2.04986 -10.2493] 29962.9 439: [-10.2493 2.04986 -10.2493] 79216.3 439: [-6.14958 2.04986 -10.2493] 64097.4 439: [-2.04986 2.04986 -10.2493] 49887.5 439: [2.04986 2.04986 -10.2493] 37198.2 439: [6.14958 2.04986 -10.2493] 30087.7 439: [10.2493 2.04986 -10.2493] 29961.4 439: [-10.2493 6.14958 -10.2493] 86370.3 439: [-6.14958 6.14958 -10.2493] 71349.9 439: [-2.04986 6.14958 -10.2493] 57424.9 439: [2.04986 6.14958 -10.2493] 45174.8 439: [6.14958 6.14958 -10.2493] 38826.9 439: [10.2493 6.14958 -10.2493] 39808.1 439: [-10.2493 10.2493 -10.2493] 101908 439: [-6.14958 10.2493 -10.2493] 86978.3 439: [-2.04986 10.2493 -10.2493] 73484.1 439: [2.04986 10.2493 -10.2493] 61959.1 439: [6.14958 10.2493 -10.2493] 57074.3 439: [10.2493 10.2493 -10.2493] 60322.2 439: [-10.2493 -10.2493 -6.14958] 86358.6 439: [-6.14958 -10.2493 -6.14958] 71329.7 439: [-2.04986 -10.2493 -6.14958] 57402.6 439: [2.04986 -10.2493 -6.14958] 45155 439: [6.14958 -10.2493 -6.14958] 38807.6 439: [10.2493 -10.2493 -6.14958] 39786.3 439: [-10.2493 -6.14958 -6.14958] 72037.7 439: [-6.14958 -6.14958 -6.14958] 56910.4 439: [-2.04986 -6.14958 -6.14958] 42538.4 439: [2.04986 -6.14958 -6.14958] 29552 439: [6.14958 -6.14958 -6.14958] 21798.9 439: [10.2493 -6.14958 -6.14958] 20651.8 439: [-10.2493 -2.04986 -6.14958] 65471 439: [-6.14958 -2.04986 -6.14958] 50210.2 439: [-2.04986 -2.04986 -6.14958] 35524.7 439: [2.04986 -2.04986 -6.14958] 22079 439: [6.14958 -2.04986 -6.14958] 13577.1 * 439: [10.2493 -2.04986 -6.14958] 11376 * 439: [-10.2493 2.04986 -6.14958] 65464.7 439: [-6.14958 2.04986 -6.14958] 50206.4 439: [-2.04986 2.04986 -6.14958] 35522.4 439: [2.04986 2.04986 -6.14958] 22077.6 439: [6.14958 2.04986 -6.14958] 13576.2 439: [10.2493 2.04986 -6.14958] 11375.4 * 439: [-10.2493 6.14958 -6.14958] 72046.3 439: [-6.14958 6.14958 -6.14958] 56926.2 439: [-2.04986 6.14958 -6.14958] 42555.4 439: [2.04986 6.14958 -6.14958] 29566.2 439: [6.14958 6.14958 -6.14958] 21812 439: [10.2493 6.14958 -6.14958] 20666.5 439: [-10.2493 10.2493 -6.14958] 86238.7 439: [-6.14958 10.2493 -6.14958] 71277.5 439: [-2.04986 10.2493 -6.14958] 57383.1 439: [2.04986 10.2493 -6.14958] 45141 439: [6.14958 10.2493 -6.14958] 38798.2 439: [10.2493 10.2493 -6.14958] 39782.4 439: [-10.2493 -10.2493 -2.04986] 79223.6 439: [-6.14958 -10.2493 -2.04986] 64102 439: [-2.04986 -10.2493 -2.04986] 49890.5 439: [2.04986 -10.2493 -2.04986] 37200.4 439: [6.14958 -10.2493 -2.04986] 30089.3 439: [10.2493 -10.2493 -2.04986] 29962.9 439: [-10.2493 -6.14958 -2.04986] 65471 439: [-6.14958 -6.14958 -2.04986] 50210.2 439: [-2.04986 -6.14958 -2.04986] 35524.7 439: [2.04986 -6.14958 -2.04986] 22079 439: [6.14958 -6.14958 -2.04986] 13577.1 439: [10.2493 -6.14958 -2.04986] 11376 439: [-10.2493 -2.04986 -2.04986] 59138.3 439: [-6.14958 -2.04986 -2.04986] 43721.4 439: [-2.04986 -2.04986 -2.04986] 28705.1 439: [2.04986 -2.04986 -2.04986] 14788.4 439: [6.14958 -2.04986 -2.04986] 5539.07 * 439: [10.2493 -2.04986 -2.04986] 2301.37 * 439: [-10.2493 2.04986 -2.04986] 59132.6 439: [-6.14958 2.04986 -2.04986] 43718 439: [-2.04986 2.04986 -2.04986] 28703.3 439: [2.04986 2.04986 -2.04986] 14787.4 439: [6.14958 2.04986 -2.04986] 5538.67 439: [10.2493 2.04986 -2.04986] 2301.27 * 439: [-10.2493 6.14958 -2.04986] 65478.6 439: [-6.14958 6.14958 -2.04986] 50224.3 439: [-2.04986 6.14958 -2.04986] 35539.7 439: [2.04986 6.14958 -2.04986] 22091 439: [6.14958 6.14958 -2.04986] 13587.7 439: [10.2493 6.14958 -2.04986] 11387.8 439: [-10.2493 10.2493 -2.04986] 79111.5 439: [-6.14958 10.2493 -2.04986] 64054.3 439: [-2.04986 10.2493 -2.04986] 49873.8 439: [2.04986 10.2493 -2.04986] 37188.9 439: [6.14958 10.2493 -2.04986] 30082.5 439: [10.2493 10.2493 -2.04986] 29961.4 439: [-10.2493 -10.2493 2.04986] 79216.3 439: [-6.14958 -10.2493 2.04986] 64097.4 439: [-2.04986 -10.2493 2.04986] 49887.5 439: [2.04986 -10.2493 2.04986] 37198.2 439: [6.14958 -10.2493 2.04986] 30087.7 439: [10.2493 -10.2493 2.04986] 29961.4 439: [-10.2493 -6.14958 2.04986] 65464.7 439: [-6.14958 -6.14958 2.04986] 50206.4 439: [-2.04986 -6.14958 2.04986] 35522.4 439: [2.04986 -6.14958 2.04986] 22077.6 439: [6.14958 -6.14958 2.04986] 13576.2 439: [10.2493 -6.14958 2.04986] 11375.4 439: [-10.2493 -2.04986 2.04986] 59132.6 439: [-6.14958 -2.04986 2.04986] 43718 439: [-2.04986 -2.04986 2.04986] 28703.3 439: [2.04986 -2.04986 2.04986] 14787.4 439: [6.14958 -2.04986 2.04986] 5538.67 439: [10.2493 -2.04986 2.04986] 2301.27 * 439: [-10.2493 2.04986 2.04986] 59126.8 439: [-6.14958 2.04986 2.04986] 43714.7 439: [-2.04986 2.04986 2.04986] 28701.5 439: [2.04986 2.04986 2.04986] 14786.4 439: [6.14958 2.04986 2.04986] 5538.27 439: [10.2493 2.04986 2.04986] 2301.18 * 439: [-10.2493 6.14958 2.04986] 65472.3 439: [-6.14958 6.14958 2.04986] 50220.5 439: [-2.04986 6.14958 2.04986] 35537.5 439: [2.04986 6.14958 2.04986] 22089.6 439: [6.14958 6.14958 2.04986] 13586.9 439: [10.2493 6.14958 2.04986] 11387.2 439: [-10.2493 10.2493 2.04986] 79104.4 439: [-6.14958 10.2493 2.04986] 64049.8 439: [-2.04986 10.2493 2.04986] 49870.9 439: [2.04986 10.2493 2.04986] 37186.9 439: [6.14958 10.2493 2.04986] 30080.9 439: [10.2493 10.2493 2.04986] 29960.1 439: [-10.2493 -10.2493 6.14958] 86370.3 439: [-6.14958 -10.2493 6.14958] 71349.9 439: [-2.04986 -10.2493 6.14958] 57424.9 439: [2.04986 -10.2493 6.14958] 45174.8 439: [6.14958 -10.2493 6.14958] 38826.9 439: [10.2493 -10.2493 6.14958] 39808.1 439: [-10.2493 -6.14958 6.14958] 72046.3 439: [-6.14958 -6.14958 6.14958] 56926.2 439: [-2.04986 -6.14958 6.14958] 42555.4 439: [2.04986 -6.14958 6.14958] 29566.2 439: [6.14958 -6.14958 6.14958] 21812 439: [10.2493 -6.14958 6.14958] 20666.5 439: [-10.2493 -2.04986 6.14958] 65478.6 439: [-6.14958 -2.04986 6.14958] 50224.3 439: [-2.04986 -2.04986 6.14958] 35539.7 439: [2.04986 -2.04986 6.14958] 22091 439: [6.14958 -2.04986 6.14958] 13587.7 439: [10.2493 -2.04986 6.14958] 11387.8 439: [-10.2493 2.04986 6.14958] 65472.4 439: [-6.14958 2.04986 6.14958] 50220.5 439: [-2.04986 2.04986 6.14958] 35537.5 439: [2.04986 2.04986 6.14958] 22089.6 439: [6.14958 2.04986 6.14958] 13586.9 439: [10.2493 2.04986 6.14958] 11387.2 439: [-10.2493 6.14958 6.14958] 72055.1 439: [-6.14958 6.14958 6.14958] 56942.1 439: [-2.04986 6.14958 6.14958] 42572.7 439: [2.04986 6.14958 6.14958] 29580.5 439: [6.14958 6.14958 6.14958] 21825.4 439: [10.2493 6.14958 6.14958] 20681.4 439: [-10.2493 10.2493 6.14958] 86251.4 439: [-6.14958 10.2493 6.14958] 71298.8 439: [-2.04986 10.2493 6.14958] 57406.5 439: [2.04986 10.2493 6.14958] 45161.9 439: [6.14958 10.2493 6.14958] 38818.7 439: [10.2493 10.2493 6.14958] 39805.5 439: [-10.2493 -10.2493 10.2493] 101908 439: [-6.14958 -10.2493 10.2493] 86978.3 439: [-2.04986 -10.2493 10.2493] 73484.1 439: [2.04986 -10.2493 10.2493] 61959.1 439: [6.14958 -10.2493 10.2493] 57074.3 439: [10.2493 -10.2493 10.2493] 60322.2 439: [-10.2493 -6.14958 10.2493] 86238.7 439: [-6.14958 -6.14958 10.2493] 71277.5 439: [-2.04986 -6.14958 10.2493] 57383.1 439: [2.04986 -6.14958 10.2493] 45141 439: [6.14958 -6.14958 10.2493] 38798.2 439: [10.2493 -6.14958 10.2493] 39782.4 439: [-10.2493 -2.04986 10.2493] 79111.5 439: [-6.14958 -2.04986 10.2493] 64054.3 439: [-2.04986 -2.04986 10.2493] 49873.8 439: [2.04986 -2.04986 10.2493] 37188.9 439: [6.14958 -2.04986 10.2493] 30082.5 439: [10.2493 -2.04986 10.2493] 29961.4 439: [-10.2493 2.04986 10.2493] 79104.4 439: [-6.14958 2.04986 10.2493] 64049.8 439: [-2.04986 2.04986 10.2493] 49870.9 439: [2.04986 2.04986 10.2493] 37186.9 439: [6.14958 2.04986 10.2493] 30081 439: [10.2493 2.04986 10.2493] 29960.1 439: [-10.2493 6.14958 10.2493] 86251.4 439: [-6.14958 6.14958 10.2493] 71298.8 439: [-2.04986 6.14958 10.2493] 57406.5 439: [2.04986 6.14958 10.2493] 45161.9 439: [6.14958 6.14958 10.2493] 38818.7 439: [10.2493 6.14958 10.2493] 39805.5 439: [-10.2493 10.2493 10.2493] 101782 439: [-6.14958 10.2493 10.2493] 86927.9 439: [-2.04986 10.2493 10.2493] 73469.9 439: [2.04986 10.2493 10.2493] 61951.1 439: [6.14958 10.2493 10.2493] 57072 439: [10.2493 10.2493 10.2493] 60327 439: [2] xf_out->m_type = 1, xf_in->m_type = 0 439: ** Registration worker thread finished. 439: Warping... 439: plm_warp_itk: xform_to_itk_vf 439: plm_warp_itk: convert_to_itk 439: plm_warp_itk: warping... 439: Saving image... 439: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.mha 439: Load: 0.055032 439: Run: 0.198956 439: Save: 0.0175719 439: Total: 0.27156 439: Finished! 439: 439: STDERR: 439: Not an error 136/578 Test #439: plm-reg-autores-b ..................... Passed 0.76 sec test 468 Start 468: plm-scale-vf-a 468: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-scale-vf-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=scale;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd;--weight;0.4;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 468: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 468: Test timeout computed to be: 1500 448: RETVAL: 0 448: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha 448: Finished! 448: 448: STDERR: 448: Not an error 137/578 Test #448: plm-compose-b ......................... Passed 0.76 sec test 474 Start 474: plm-thumbnail-a 474: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=thumbnail;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png;--spacing;2" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 474: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 474: Test timeout computed to be: 1500 468: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 468: PARMS is scale;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd;--weight;0.4;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha 468: EXPECTED_ERRNO is 474: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 474: PARMS is thumbnail;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png;--spacing;2 474: EXPECTED_ERRNO is 459: RETVAL: 0 459: STDOUT: Time = 0.007469 seconds 459: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha 459: 459: STDERR: 459: Not an error 138/578 Test #459: plm-resample-b ........................ Passed 0.57 sec test 477 Start 477: plm-thumbnail-b 477: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=thumbnail;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png;--spacing;2" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 477: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 477: Test timeout computed to be: 1500 452: RETVAL: 0 452: STDOUT: bspline_xform_initialize 452: rdims = (2,2,2) 452: vox_per_rgn = (22,22,22) 452: cdims = (5 5 5) 452: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha 452: Finished! 452: 452: STDERR: 452: Not an error 139/578 Test #452: plm-compose-c ......................... Passed 1.03 sec test 480 Start 480: plm-thumbnail-c 480: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=thumbnail;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png;--spacing;2;--auto-adjust" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 480: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 480: Test timeout computed to be: 1500 477: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 477: PARMS is thumbnail;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png;--spacing;2 477: EXPECTED_ERRNO is 480: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 480: PARMS is thumbnail;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png;--spacing;2;--auto-adjust 480: EXPECTED_ERRNO is 436: RETVAL: 0 436: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 436: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 436: Launching registration worker thread 436: Inside registration worker thread 436: Doing registration stage 436: [1] xf_in->m_type = 0, xf_out->m_type = 0 436: RESAMPLE 2 1: (3 3 3), (3 3 3) 436: RESAMPLE 2 1: (3 3 3), (3 3 3) 436: volume_calc_grad complete. 436: Computing grid search extent. 436: Dimension 0, mo=0.8 F=(-25, 51) M=(-25, 51) 436: Dimension 1, mo=0.8 F=(-25, 51) M=(-25, 51) 436: Dimension 2, mo=0.8 F=(-25, 51) M=(-25, 51) 436: Native grid search extent: (-10.2, 10.2), (-10.2, 10.2), (-10.2, 10.2) 436: [0 0 0] 17783.3 * 436: Global grid search 436: [-10.2 -10.2 -10.2] 92384.1 436: [-6.12 -10.2 -10.2] 83802.1 436: [-2.04 -10.2 -10.2] 69480.8 436: [2.04 -10.2 -10.2] 58333.1 436: [6.12 -10.2 -10.2] 54296.4 436: [10.2 -10.2 -10.2] 54999.5 436: [-10.2 -6.12 -10.2] 82405.6 436: [-6.12 -6.12 -10.2] 72624.1 436: [-2.04 -6.12 -10.2] 57400.6 436: [2.04 -6.12 -10.2] 44980.1 436: [6.12 -6.12 -10.2] 39080.6 436: [10.2 -6.12 -10.2] 38440 436: [-10.2 -2.04 -10.2] 74449.5 436: [-6.12 -2.04 -10.2] 64281.8 436: [-2.04 -2.04 -10.2] 49076.9 436: [2.04 -2.04 -10.2] 36415.9 436: [6.12 -2.04 -10.2] 29734.1 436: [10.2 -2.04 -10.2] 28403 436: [-10.2 2.04 -10.2] 74429.6 436: [-6.12 2.04 -10.2] 64267.5 436: [-2.04 2.04 -10.2] 49066.9 436: [2.04 2.04 -10.2] 36408.4 436: [6.12 2.04 -10.2] 29728.1 436: [10.2 2.04 -10.2] 28397.5 436: [-10.2 6.12 -10.2] 82364.6 436: [-6.12 6.12 -10.2] 72609.5 436: [-2.04 6.12 -10.2] 57395.9 436: [2.04 6.12 -10.2] 44976.1 436: [6.12 6.12 -10.2] 39078.9 436: [10.2 6.12 -10.2] 38440.1 436: [-10.2 10.2 -10.2] 92397.6 436: [-6.12 10.2 -10.2] 83916.7 436: [-2.04 10.2 -10.2] 69619.2 436: [2.04 10.2 -10.2] 58464.4 436: [6.12 10.2 -10.2] 54439.9 436: [10.2 10.2 -10.2] 55157.8 436: [-10.2 -10.2 -6.12] 82405.6 436: [-6.12 -10.2 -6.12] 72624.1 436: [-2.04 -10.2 -6.12] 57400.6 436: [2.04 -10.2 -6.12] 44980.1 436: [6.12 -10.2 -6.12] 39080.6 436: [10.2 -10.2 -6.12] 38440 436: [-10.2 -6.12 -6.12] 72448.6 436: [-6.12 -6.12 -6.12] 61337.3 436: [-2.04 -6.12 -6.12] 45076.3 436: [2.04 -6.12 -6.12] 31252.4 436: [6.12 -6.12 -6.12] 23367.4 436: [10.2 -6.12 -6.12] 21314.6 436: [-10.2 -2.04 -6.12] 64832.7 436: [-6.12 -2.04 -6.12] 53317.9 436: [-2.04 -2.04 -6.12] 37043.2 436: [2.04 -2.04 -6.12] 22959.6 436: [6.12 -2.04 -6.12] 14296.9 * 436: [10.2 -2.04 -6.12] 11566.7 * 436: [-10.2 2.04 -6.12] 64815.2 436: [-6.12 2.04 -6.12] 53306.1 436: [-2.04 2.04 -6.12] 37035.8 436: [2.04 2.04 -6.12] 22954.9 436: [6.12 2.04 -6.12] 14294.1 436: [10.2 2.04 -6.12] 11564.7 * 436: [-10.2 6.12 -6.12] 72412.3 436: [-6.12 6.12 -6.12] 61325.8 436: [-2.04 6.12 -6.12] 45074.1 436: [2.04 6.12 -6.12] 31250.7 436: [6.12 6.12 -6.12] 23367.9 436: [10.2 6.12 -6.12] 21317 436: [-10.2 10.2 -6.12] 82423.5 436: [-6.12 10.2 -6.12] 72736.2 436: [-2.04 10.2 -6.12] 57532.8 436: [2.04 10.2 -6.12] 45103.1 436: [6.12 10.2 -6.12] 39213.4 436: [10.2 10.2 -6.12] 38586 436: [-10.2 -10.2 -2.04] 74449.5 436: [-6.12 -10.2 -2.04] 64281.8 436: [-2.04 -10.2 -2.04] 49076.9 436: [2.04 -10.2 -2.04] 36415.9 436: [6.12 -10.2 -2.04] 29734.1 436: [10.2 -10.2 -2.04] 28403 436: [-10.2 -6.12 -2.04] 64832.7 436: [-6.12 -6.12 -2.04] 53317.9 436: [-2.04 -6.12 -2.04] 37043.2 436: [2.04 -6.12 -2.04] 22959.6 436: [6.12 -6.12 -2.04] 14296.9 436: [10.2 -6.12 -2.04] 11566.7 436: [-10.2 -2.04 -2.04] 57654.9 436: [-6.12 -2.04 -2.04] 45747.8 436: [-2.04 -2.04 -2.04] 29445.1 436: [2.04 -2.04 -2.04] 15101.1 436: [6.12 -2.04 -2.04] 5691.26 * 436: [10.2 -2.04 -2.04] 2314.87 * 436: [-10.2 2.04 -2.04] 57639 436: [-6.12 2.04 -2.04] 45737.4 436: [-2.04 2.04 -2.04] 29439 436: [2.04 2.04 -2.04] 15097.8 436: [6.12 2.04 -2.04] 5689.94 436: [10.2 2.04 -2.04] 2314.41 * 436: [-10.2 6.12 -2.04] 64797.7 436: [-6.12 6.12 -2.04] 53306.2 436: [-2.04 6.12 -2.04] 37040 436: [2.04 6.12 -2.04] 22956.8 436: [6.12 6.12 -2.04] 14296.1 436: [10.2 6.12 -2.04] 11567.5 436: [-10.2 10.2 -2.04] 74459.9 436: [-6.12 10.2 -2.04] 64378.9 436: [-2.04 10.2 -2.04] 49191.7 436: [2.04 10.2 -2.04] 36520.8 436: [6.12 10.2 -2.04] 29846.4 436: [10.2 10.2 -2.04] 28526.5 436: [-10.2 -10.2 2.04] 74429.6 436: [-6.12 -10.2 2.04] 64267.5 436: [-2.04 -10.2 2.04] 49066.9 436: [2.04 -10.2 2.04] 36408.4 436: [6.12 -10.2 2.04] 29728.1 436: [10.2 -10.2 2.04] 28397.6 436: [-10.2 -6.12 2.04] 64815.2 436: [-6.12 -6.12 2.04] 53306.1 436: [-2.04 -6.12 2.04] 37035.8 436: [2.04 -6.12 2.04] 22954.9 436: [6.12 -6.12 2.04] 14294.1 436: [10.2 -6.12 2.04] 11564.7 436: [-10.2 -2.04 2.04] 57639 436: [-6.12 -2.04 2.04] 45737.4 436: [-2.04 -2.04 2.04] 29439 436: [2.04 -2.04 2.04] 15097.8 436: [6.12 -2.04 2.04] 5689.94 436: [10.2 -2.04 2.04] 2314.41 436: [-10.2 2.04 2.04] 57623.1 436: [-6.12 2.04 2.04] 45727.1 436: [-2.04 2.04 2.04] 29432.9 436: [2.04 2.04 2.04] 15094.5 436: [6.12 2.04 2.04] 5688.65 436: [10.2 2.04 2.04] 2313.97 * 436: [-10.2 6.12 2.04] 64780.4 436: [-6.12 6.12 2.04] 53294.5 436: [-2.04 6.12 2.04] 37032.7 436: [2.04 6.12 2.04] 22952.3 436: [6.12 6.12 2.04] 14293.5 436: [10.2 6.12 2.04] 11565.7 436: [-10.2 10.2 2.04] 74440.3 436: [-6.12 10.2 2.04] 64365 436: [-2.04 10.2 2.04] 49182.1 436: [2.04 10.2 2.04] 36513.6 436: [6.12 10.2 2.04] 29840.9 436: [10.2 10.2 2.04] 28521.4 436: [-10.2 -10.2 6.12] 82364.6 436: [-6.12 -10.2 6.12] 72609.5 436: [-2.04 -10.2 6.12] 57395.9 436: [2.04 -10.2 6.12] 44976.1 436: [6.12 -10.2 6.12] 39078.9 436: [10.2 -10.2 6.12] 38440.1 436: [-10.2 -6.12 6.12] 72412.2 436: [-6.12 -6.12 6.12] 61325.8 436: [-2.04 -6.12 6.12] 45074.1 436: [2.04 -6.12 6.12] 31250.7 436: [6.12 -6.12 6.12] 23367.9 436: [10.2 -6.12 6.12] 21317 436: [-10.2 -2.04 6.12] 64797.7 436: [-6.12 -2.04 6.12] 53306.2 436: [-2.04 -2.04 6.12] 37040 436: [2.04 -2.04 6.12] 22956.8 436: [6.12 -2.04 6.12] 14296.1 436: [10.2 -2.04 6.12] 11567.5 436: [-10.2 2.04 6.12] 64780.3 436: [-6.12 2.04 6.12] 53294.5 436: [-2.04 2.04 6.12] 37032.7 436: [2.04 2.04 6.12] 22952.3 436: [6.12 2.04 6.12] 14293.5 436: [10.2 2.04 6.12] 11565.7 436: [-10.2 6.12 6.12] 72376.5 436: [-6.12 6.12 6.12] 61315 436: [-2.04 6.12 6.12] 45072.4 436: [2.04 6.12 6.12] 31249.7 436: [6.12 6.12 6.12] 23369.2 436: [10.2 6.12 6.12] 21320.2 436: [-10.2 10.2 6.12] 82385 436: [-6.12 10.2 6.12] 72724.1 436: [-2.04 10.2 6.12] 57530.6 436: [2.04 10.2 6.12] 45101.8 436: [6.12 10.2 6.12] 39214.6 436: [10.2 10.2 6.12] 38589.1 436: [-10.2 -10.2 10.2] 92397.6 436: [-6.12 -10.2 10.2] 83916.7 436: [-2.04 -10.2 10.2] 69619.2 436: [2.04 -10.2 10.2] 58464.4 436: [6.12 -10.2 10.2] 54439.9 436: [10.2 -10.2 10.2] 55157.8 436: [-10.2 -6.12 10.2] 82423.5 436: [-6.12 -6.12 10.2] 72736.1 436: [-2.04 -6.12 10.2] 57532.8 436: [2.04 -6.12 10.2] 45103.1 436: [6.12 -6.12 10.2] 39213.4 436: [10.2 -6.12 10.2] 38586 436: [-10.2 -2.04 10.2] 74459.9 436: [-6.12 -2.04 10.2] 64378.9 436: [-2.04 -2.04 10.2] 49191.7 436: [2.04 -2.04 10.2] 36520.8 436: [6.12 -2.04 10.2] 29846.4 436: [10.2 -2.04 10.2] 28526.5 436: [-10.2 2.04 10.2] 74440.3 436: [-6.12 2.04 10.2] 64365 436: [-2.04 2.04 10.2] 49182.1 436: [2.04 2.04 10.2] 36513.6 436: [6.12 2.04 10.2] 29840.9 436: [10.2 2.04 10.2] 28521.4 436: [-10.2 6.12 10.2] 82385 436: [-6.12 6.12 10.2] 72724.1 436: [-2.04 6.12 10.2] 57530.6 436: [2.04 6.12 10.2] 45101.8 436: [6.12 6.12 10.2] 39214.6 436: [10.2 6.12 10.2] 38589.1 436: [-10.2 10.2 10.2] 92421.5 436: [-6.12 10.2 10.2] 84042.5 436: [-2.04 10.2 10.2] 69768.6 436: [2.04 10.2 10.2] 58606.7 436: [6.12 10.2 10.2] 54595.3 436: [10.2 10.2 10.2] 55328.8 436: [2] xf_out->m_type = 1, xf_in->m_type = 0 436: ** Registration worker thread finished. 436: Warping... 436: plm_warp_itk: xform_to_itk_vf 436: plm_warp_itk: convert_to_itk 436: plm_warp_itk: warping... 436: Saving image... 436: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.mha 436: Load: 0.188146 436: Run: 0.258352 436: Save: 0.0229311 436: Total: 0.469429 436: Finished! 436: 436: STDERR: 436: Not an error 140/578 Test #436: plm-reg-autores-a ..................... Passed 1.26 sec test 483 Start 483: plm-intersect 483: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-intersect" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=intersect;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 483: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 483: Test timeout computed to be: 1500 483: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 483: PARMS is intersect;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha 483: EXPECTED_ERRNO is 462: RETVAL: 0 462: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha 462: 462: STDERR: 462: Not an error 456: RETVAL: 0 456: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha 456: 456: STDERR: 456: Not an error 141/578 Test #462: plm-resample-c ........................ Passed 0.82 sec test 486 Start 486: plm-union 486: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-union" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=union;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 486: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 486: Test timeout computed to be: 1500 142/578 Test #456: plm-resample-a ........................ Passed 0.93 sec test 489 Start 489: plm-threshold-a 489: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=threshold;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha;--above;-888" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 489: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 489: Test timeout computed to be: 1500 486: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 486: PARMS is union;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha 486: EXPECTED_ERRNO is 489: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 489: PARMS is threshold;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha;--above;-888 489: EXPECTED_ERRNO is 412: RETVAL: 0 412: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha 412: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha 412: Launching registration worker thread 412: Inside registration worker thread 412: Doing registration stage 412: [1] xf_in->m_type = 0, xf_out->m_type = 0 412: RESAMPLE 1 1: (4 4 4), (4 4 4) 412: RESAMPLE 1 1: (4 4 4), (4 4 4) 412: volume_calc_grad complete. 412: bspline_xform_initialize 412: Warning: vox_per_rgn was less than 4. 412: Warning: vox_per_rgn was less than 4. 412: Warning: vox_per_rgn was less than 4. 412: rdims = (3,3,3) 412: vox_per_rgn = (4,4,4) 412: cdims = (6 6 6) 412: Algorithm flavor = g 412: Threading = 0 412: >> Checking JH allocation 412: BSPLINE PARMS 412: max_its = 20 412: max_feval = 20 412: BSPLINE XFORM HEADER 412: vox_per_rgn = 4 4 4 412: roi_offset = 0 0 0 412: roi_dim = 9 9 9 412: img_dc = 1 0 0 0 1 0 0 0 1 412: BST METRICS 412: MET 110100 MSE 1.000000 412: Setting nmax, mmax = 648 27 412: >>> START 412: This problem is unconstrained. 412: [ 0, 0] MSE 1310.066 NV 729 GM 32.312 GN 10.8 [ 0.050 s ] 412: CMIN 0.00 CAVG 0.00 CMAX 0.00 412: LSD 0.00 412: [ 0, 1] MSE 1295.068 NV 729 GM 32.107 GN 10.8 [ 0.020 s ] 412: CMIN -0.80 CAVG -0.00 CMAX 0.03 412: LSD 1.00 412: [ 0, 2] MSE 1236.886 NV 729 GM 31.289 GN 10.5 [ 0.032 s ] 412: CMIN -3.98 CAVG -0.02 CMAX 0.14 412: LSD 5.00 412: [ 0, 3] MSE 1033.121 NV 729 GM 28.011 GN 9.4 [ 0.032 s ] 412: CMIN -16.73 CAVG -0.10 CMAX 0.57 412: LSD 21.00 412: [ 1, 4] MSE 1227.425 NV 729 GM -31.287 GN 10.6 [ 0.016 s ] 412: CMIN -130.39 CAVG -0.75 CMAX 15.78 412: LSD 145.43 412: [ 1, 5] MSE 666.262 NV 729 GM 16.009 GN 5.49 [ 0.032 s ] 412: CMIN -63.32 CAVG -0.36 CMAX 6.81 412: LSD 59.61 412: [ 2, 6] MSE 1232.974 NV 729 GM -31.573 GN 10.6 [ 0.016 s ] 412: CMIN -133.31 CAVG -0.76 CMAX 26.37 412: LSD 96.76 412: [ 2, 7] MSE 663.364 NV 729 GM -16.837 GN 5.81 [ 0.036 s ] 412: CMIN -74.19 CAVG -0.42 CMAX 9.85 412: LSD 15.03 412: [ 3, 8] MSE 654.961 NV 729 GM -10.617 GN 3.9 [ 0.028 s ] 412: CMIN -69.17 CAVG -0.40 CMAX 9.75 412: LSD 6.20 412: [ 4, 9] MSE 648.056 NV 729 GM 16.849 GN 5.74 [ 0.016 s ] 412: CMIN -59.17 CAVG -0.35 CMAX 12.07 412: LSD 13.05 412: [ 4, 10] MSE 648.518 NV 729 GM 6.481 GN 2.37 [ 0.032 s ] 412: CMIN -64.64 CAVG -0.37 CMAX 10.80 412: LSD 5.91 412: [ 5, 11] MSE 642.586 NV 729 GM -2.800 GN 1.61 [ 0.016 s ] 412: CMIN -65.72 CAVG -0.38 CMAX 12.16 412: LSD 3.39 412: [ 6, 12] MSE 621.446 NV 729 GM -3.050 GN 1.62 [ 0.032 s ] 412: CMIN -65.92 CAVG -0.39 CMAX 17.36 412: LSD 11.87 412: [ 6, 13] MSE 550.866 NV 729 GM -6.628 GN 2.45 [ 0.032 s ] 412: CMIN -66.69 CAVG -0.41 CMAX 38.13 412: LSD 59.33 412: [ 7, 14] MSE 512.605 NV 729 GM -3.857 GN 1.62 [ 0.016 s ] 412: CMIN -62.22 CAVG -0.42 CMAX 47.82 412: LSD 24.85 412: [ 7, 15] MSE 447.450 NV 729 GM 1.527 GN 1.38 [ 0.032 s ] 412: CMIN -86.57 CAVG -0.48 CMAX 86.57 412: LSD 124.23 412: [ 7, 16] MSE 464.351 NV 729 GM 2.120 GN 1.3 [ 0.032 s ] 412: CMIN -65.28 CAVG -0.45 CMAX 65.28 412: LSD 69.63 412: [ 8, 17] MSE 472.701 NV 729 GM -6.632 GN 2.42 [ 0.016 s ] 412: CMIN -65.88 CAVG -0.45 CMAX 65.88 412: LSD 10.76 412: [ 8, 18] MSE 465.428 NV 729 GM 2.619 GN 1.34 [ 0.032 s ] 412: CMIN -65.36 CAVG -0.45 CMAX 65.36 412: LSD 1.50 412: [ 8, 19] MSE 464.475 NV 729 GM 2.117 GN 1.3 [ 0.016 s ] 412: CMIN -65.29 CAVG -0.45 CMAX 65.29 412: LSD 0.17 412: [ 8, 20] MSE 464.365 NV 729 GM 2.120 GN 1.3 [ 0.032 s ] 412: CMIN -65.28 CAVG -0.45 CMAX 65.28 412: LSD 0.02 412: [2] xf_out->m_type = 9, xf_in->m_type = 0 412: Doing registration stage 412: [1] xf_in->m_type = 9, xf_out->m_type = 0 412: RESAMPLE 1 1: (1 1 1), (1 1 1) 412: RESAMPLE 1 1: (1 1 1), (1 1 1) 412: volume_calc_grad complete. 412: bspline_xform_initialize 412: Warning: vox_per_rgn was less than 4. 412: Warning: vox_per_rgn was less than 4. 412: Warning: vox_per_rgn was less than 4. 412: rdims = (10,10,10) 412: vox_per_rgn = (4,4,4) 412: cdims = (13 13 13) 412: Algorithm flavor = g 412: Threading = 0 412: >> Checking JH allocation 412: BSPLINE PARMS 412: max_its = 20 412: max_feval = 20 412: BSPLINE XFORM HEADER 412: vox_per_rgn = 4 4 4 412: roi_offset = 0 0 0 412: roi_dim = 38 38 38 412: img_dc = 1 0 0 0 1 0 0 0 1 412: BST METRICS 412: MET 110100 MSE 1.000000 412: Setting nmax, mmax = 6591 83 412: >>> START 412: This problem is unconstrained. 412: [ 0, 0] MSE 2187.416 NV 54548 GM -54.885 GN 20.1 [ 0.027 s ] 412: CMIN -34.32 CAVG -2.98 CMAX 34.99 412: LSD 0.00 412: [ 0, 1] MSE 2164.676 NV 54548 GM -53.547 GN 19.7 [ 0.045 s ] 412: CMIN -34.32 CAVG -2.98 CMAX 34.99 412: LSD 1.00 412: [ 0, 2] MSE 2077.643 NV 54548 GM -48.153 GN 18.1 [ 0.015 s ] 412: CMIN -34.32 CAVG -2.98 CMAX 34.99 412: LSD 5.00 412: [ 1, 3] MSE 1531.465 NV 54548 GM -5.028 GN 6.72 [ 0.032 s ] 412: CMIN -34.32 CAVG -2.97 CMAX 34.99 412: LSD 49.50 412: [ 2, 4] MSE 1454.329 NV 54548 GM 33.264 GN 9.36 [ 0.023 s ] 412: CMIN -34.74 CAVG -2.96 CMAX 34.99 412: LSD 27.82 412: [ 3, 5] MSE 1285.873 NV 54548 GM 41.621 GN 9.3 [ 0.013 s ] 412: CMIN -38.62 CAVG -2.96 CMAX 34.99 412: LSD 33.32 412: [ 4, 6] MSE 601.694 NV 54548 GM -58.120 GN 12.7 [ 0.024 s ] 412: CMIN -66.67 CAVG -3.01 CMAX 47.45 412: LSD 225.15 412: [ 5, 7] MSE 543.836 NV 54548 GM 31.901 GN 9.57 [ 0.025 s ] 412: CMIN -66.22 CAVG -2.99 CMAX 59.99 412: LSD 53.14 412: [ 6, 8] MSE 418.242 NV 54548 GM 12.804 GN 3.31 [ 0.014 s ] 412: CMIN -65.97 CAVG -3.00 CMAX 53.84 412: LSD 23.35 412: [ 7, 9] MSE 404.446 NV 54548 GM -9.046 GN 2.82 [ 0.015 s ] 412: CMIN -67.92 CAVG -3.00 CMAX 54.77 412: LSD 12.26 412: [ 8, 10] MSE 385.397 NV 54548 GM -5.940 GN 2.61 [ 0.013 s ] 412: CMIN -68.58 CAVG -3.00 CMAX 55.54 412: LSD 8.37 412: [ 9, 11] MSE 330.971 NV 54548 GM -28.234 GN 4.05 [ 0.024 s ] 412: CMIN -72.02 CAVG -3.01 CMAX 62.09 412: LSD 44.90 412: [10, 12] MSE 292.026 NV 54548 GM -5.908 GN 2.66 [ 0.036 s ] 412: CMIN -74.57 CAVG -3.00 CMAX 67.66 412: LSD 33.62 412: [11, 13] MSE 251.369 NV 54548 GM 4.024 GN 2.37 [ 0.022 s ] 412: CMIN -84.98 CAVG -2.99 CMAX 73.83 412: LSD 50.34 412: [12, 14] MSE 228.758 NV 54548 GM 11.643 GN 4.01 [ 0.022 s ] 412: CMIN -98.90 CAVG -2.97 CMAX 76.10 412: LSD 60.96 412: [13, 15] MSE 306.308 NV 54548 GM 49.796 GN 7.96 [ 0.025 s ] 412: CMIN -130.24 CAVG -2.94 CMAX 83.22 412: LSD 135.53 412: [13, 16] MSE 226.800 NV 54548 GM 20.941 GN 4.12 [ 0.033 s ] 412: CMIN -103.93 CAVG -2.96 CMAX 76.84 412: LSD 21.75 412: [14, 17] MSE 205.578 NV 54548 GM 24.444 GN 3.6 [ 0.025 s ] 412: CMIN -117.55 CAVG -2.96 CMAX 78.37 412: LSD 53.89 412: [15, 18] MSE 158.105 NV 54548 GM 6.383 GN 1.69 [ 0.021 s ] 412: CMIN -116.51 CAVG -2.96 CMAX 72.95 412: LSD 24.10 412: [16, 19] MSE 139.232 NV 54548 GM -1.923 GN 1.28 [ 0.021 s ] 412: CMIN -119.83 CAVG -2.96 CMAX 72.22 412: LSD 15.80 412: [17, 20] MSE 119.453 NV 54548 GM -6.009 GN 1.45 [ 0.022 s ] 412: CMIN -128.50 CAVG -2.96 CMAX 71.16 412: LSD 33.91 412: [2] xf_out->m_type = 9, xf_in->m_type = 9 412: ** Registration worker thread finished. 412: Warping... 412: Running: plm_warp_native 412: Converting input image... 412: Converting xform... 412: bspline_xform_initialize 412: rdims = (10,10,10) 412: vox_per_rgn = (4,4,4) 412: cdims = (13 13 13) 412: Creating output volume... 412: Running native warper... 412: bspline_warp complete. 412: Back convert to original type... 412: plm_warp_native is complete. 412: Saving image... 412: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-img.nrrd 412: Load: 0.23719 412: Run: 1.2074 412: Save: 0.0798609 412: Total: 1.52446 412: Finished! 412: 412: STDERR: 412: Not an error 143/578 Test #412: plm-reg-multi-b ....................... Passed 2.61 sec test 492 Start 492: plm-threshold-b 492: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=threshold;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha;--below;-900" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 492: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 492: Test timeout computed to be: 1500 492: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 492: PARMS is threshold;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha;--below;-900 492: EXPECTED_ERRNO is 465: RETVAL: 0 465: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd 465: 465: STDERR: 465: Not an error 144/578 Test #465: plm-scale-a ........................... Passed 0.96 sec test 495 Start 495: plm-threshold-c 495: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=threshold;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha;--range;-900,-888" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 495: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 495: Test timeout computed to be: 1500 474: RETVAL: 0 474: STDOUT: Time = 0.005968 seconds 474: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png 474: 474: STDERR: 474: Not an error 495: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 495: PARMS is threshold;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha;--range;-900,-888 495: EXPECTED_ERRNO is 145/578 Test #474: plm-thumbnail-a ....................... Passed 0.86 sec test 501 Start 501: plm-warp-a 501: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--algorithm;itk;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 501: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 501: Test timeout computed to be: 1500 501: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 501: PARMS is warp;--algorithm;itk;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha 501: EXPECTED_ERRNO is 468: RETVAL: 0 468: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd 468: 468: STDERR: 468: Not an error 146/578 Test #468: plm-scale-vf-a ........................ Passed 0.99 sec test 504 Start 504: plm-warp-b 504: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha;--default-value;0" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 504: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 504: Test timeout computed to be: 1500 477: RETVAL: 0 477: STDOUT: Time = 0.006310 seconds 477: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png 477: 477: STDERR: 477: Not an error 147/578 Test #477: plm-thumbnail-b ....................... Passed 0.68 sec test 509 Start 509: plm-warp-c 509: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--algorithm;itk;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-vf.mha;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha;--interpolation;nn;--default-value;0" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 509: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 509: Test timeout computed to be: 1500 504: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 504: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha;--default-value;0 504: EXPECTED_ERRNO is 509: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 509: PARMS is warp;--algorithm;itk;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-vf.mha;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha;--interpolation;nn;--default-value;0 509: EXPECTED_ERRNO is 489: RETVAL: 0 489: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha 489: 489: STDERR: 489: Not an error 148/578 Test #489: plm-threshold-a ....................... Passed 0.44 sec test 512 Start 512: plm-warp-d 512: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-vf.mha;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha;--interpolation;nn;--default-value;0" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 512: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 512: Test timeout computed to be: 1500 512: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 512: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-vf.mha;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha;--interpolation;nn;--default-value;0 512: EXPECTED_ERRNO is 483: RETVAL: 0 483: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha 483: 483: STDERR: 483: Not an error 149/578 Test #483: plm-intersect ......................... Passed 0.71 sec test 515 Start 515: plm-warp-f 515: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-f" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd;--default-value;0;--harden-linear-xf" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 515: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 515: Test timeout computed to be: 1500 515: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 515: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd;--default-value;0;--harden-linear-xf 515: EXPECTED_ERRNO is 486: RETVAL: 0 486: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha 486: 486: STDERR: 486: Not an error 150/578 Test #486: plm-union ............................. Passed 0.62 sec test 518 Start 518: plm-warp-g 518: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-g" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd;--default-value;0;--resample-linear-xf" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 518: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 518: Test timeout computed to be: 1500 480: RETVAL: 0 480: STDOUT: Time = 0.002674 seconds 480: Auto-adjusting intensities... 480: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png 480: 480: STDERR: 480: Not an error 151/578 Test #480: plm-thumbnail-c ....................... Passed 0.95 sec test 521 Start 521: plm-warp-h 521: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-h" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-img.nrrd;--default-value;0;--resample-linear-xf" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 521: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 521: Test timeout computed to be: 1500 492: RETVAL: 0 492: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha 492: 492: STDERR: 492: Not an error 152/578 Test #492: plm-threshold-b ....................... Passed 0.59 sec test 524 Start 524: plm-warp-i 524: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-i" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-img.nrrd;--default-value;0;--resample-linear-xf" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 524: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 524: Test timeout computed to be: 1500 518: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 518: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd;--default-value;0;--resample-linear-xf 518: EXPECTED_ERRNO is 521: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 521: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-img.nrrd;--default-value;0;--resample-linear-xf 521: EXPECTED_ERRNO is 524: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 524: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-img.nrrd;--default-value;0;--resample-linear-xf 524: EXPECTED_ERRNO is 495: RETVAL: 0 495: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha 495: 495: STDERR: 495: Not an error 153/578 Test #495: plm-threshold-c ....................... Passed 0.65 sec test 527 Start 527: plm-xf-convert-a 527: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-1.txt;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125;" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 527: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 527: Test timeout computed to be: 1500 512: RETVAL: 0 512: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt) 512: bspline_xform_initialize 512: rdims = (3,3,3) 512: vox_per_rgn = (15,15,15) 512: cdims = (6 6 6) 512: Setting PIH from XFORM 512: PIH is: 512: Origin = -25.0000 -25.0000 -25.0000 512: Size = 38 38 38 512: Spacing = 1.3158 1.3158 1.3158 512: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 512: Rt_study_warp: Warping m_img 512: Running: plm_warp_native 512: Converting input image... 512: Converting xform... 512: bspline_xform_initialize 512: rdims = (3,3,3) 512: vox_per_rgn = (15,15,15) 512: cdims = (6 6 6) 512: Creating output vf... 512: Creating output volume... 512: Running native warper... 512: bspline_warp complete. 512: Back convert to original type... 512: > Convert vf to itk 512: > Conversion complete. 512: plm_warp_native is complete. 512: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha) 512: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha 512: Rt_study_warp: Saving vf. 512: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-vf.mha 512: Rt_study_warp: warp and save ss. 512: Finished! 512: 512: STDERR: 512: Not an error 527: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 527: PARMS is xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-1.txt;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125; 527: EXPECTED_ERRNO is 154/578 Test #512: plm-warp-d ............................ Passed 0.58 sec test 531 Start 531: plm-xf-convert-d-warp-1 531: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-xf-convert.txt;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 531: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 531: Test timeout computed to be: 1500 515: RETVAL: 0 515: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm) 515: Setting PIH from M_IMG 515: PIH is: 515: Origin = -243.4211 -243.4211 -243.4211 515: Size = 38 38 38 515: Spacing = 13.1579 13.1579 13.1579 515: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 515: Rt_study_warp: Warping m_img 515: plm_warp_itk: xform_to_itk_vf 515: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd) 515: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd 515: Rt_study_warp: warp and save ss. 515: Finished! 515: 515: STDERR: 515: Not an error 504: RETVAL: 0 504: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt) 504: bspline_xform_initialize 504: rdims = (3,3,3) 504: vox_per_rgn = (15,15,15) 504: cdims = (6 6 6) 504: Setting PIH from XFORM 504: PIH is: 504: Origin = -25.0000 -25.0000 -25.0000 504: Size = 38 38 38 504: Spacing = 1.3158 1.3158 1.3158 504: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 504: Rt_study_warp: Warping m_img 504: Running: plm_warp_native 504: Converting input image... 504: Converting xform... 504: bspline_xform_initialize 504: rdims = (3,3,3) 504: vox_per_rgn = (15,15,15) 504: cdims = (6 6 6) 504: Creating output vf... 504: Creating output volume... 504: Running native warper... 504: bspline_warp complete. 504: Back convert to original type... 504: > Convert vf to itk 504: > Conversion complete. 504: plm_warp_native is complete. 504: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha) 504: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha 504: Rt_study_warp: Saving vf. 504: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha 504: Rt_study_warp: warp and save ss. 504: Finished! 504: 504: STDERR: 504: Not an error 531: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 531: PARMS is warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-xf-convert.txt;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd 531: EXPECTED_ERRNO is 155/578 Test #504: plm-warp-b ............................ Passed 0.76 sec test 534 Start 534: plm-xf-convert-d-warp-2 534: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 534: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 534: Test timeout computed to be: 1500 156/578 Test #515: plm-warp-f ............................ Passed 0.58 sec test 540 Start 540: plm-xf-convert-h 540: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-h" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-type;vf" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 540: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 540: Test timeout computed to be: 1500 534: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 534: PARMS is warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd 534: EXPECTED_ERRNO is 540: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 540: PARMS is xf-convert;--filenames-without-uids;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-type;vf 540: EXPECTED_ERRNO is 501: RETVAL: 0 501: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt) 501: bspline_xform_initialize 501: rdims = (3,3,3) 501: vox_per_rgn = (15,15,15) 501: cdims = (6 6 6) 501: Setting PIH from XFORM 501: PIH is: 501: Origin = -25.0000 -25.0000 -25.0000 501: Size = 38 38 38 501: Spacing = 1.3158 1.3158 1.3158 501: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 501: Rt_study_warp: Warping m_img 501: plm_warp_itk: xform_to_itk_vf 501: plm_warp_itk: convert_to_itk 501: plm_warp_itk: warping... 501: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha) 501: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha 501: Rt_study_warp: Saving vf. 501: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha 501: Rt_study_warp: warp and save ss. 501: Finished! 501: 501: STDERR: 501: Not an error 157/578 Test #501: plm-warp-a ............................ Passed 0.94 sec test 543 Start 543: plm-xf-convert-i 543: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-i" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-1.txt;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-vf.nrrd;--output-type;vf" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 543: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 543: Test timeout computed to be: 1500 521: RETVAL: 0 521: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt) 521: Setting PIH from M_IMG 521: PIH is: 521: Origin = -25.0000 -25.0000 -25.0000 521: Size = 38 38 38 521: Spacing = 1.3158 1.3158 1.3158 521: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 521: Rt_study_warp: Warping m_img 521: plm_warp_itk: xform_to_itk_vf 521: plm_warp_itk: convert_to_itk 521: plm_warp_itk: warping... 521: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-img.nrrd) 521: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-img.nrrd 521: Rt_study_warp: warp and save ss. 521: Finished! 521: 521: STDERR: 521: Not an error 158/578 Test #521: plm-warp-h ............................ Passed 0.59 sec test 546 Start 546: xf-invert-vf-zero-1 546: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-zero-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 546: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 546: Test timeout computed to be: 1500 543: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 543: PARMS is xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-1.txt;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-vf.nrrd;--output-type;vf 543: EXPECTED_ERRNO is 546: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 546: PARMS is xf-invert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha 546: EXPECTED_ERRNO is 527: RETVAL: 0 527: STDOUT: bspline_xform_initialize 527: rdims = (1,1,1) 527: vox_per_rgn = (4,4,4) 527: cdims = (4 4 4) 527: about to xform_convert 527: Converting to (itk) vector field 527: did xform_convert 527: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha 527: 527: STDERR: 518: RETVAL: 0 518: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm) 518: Setting PIH from M_IMG 518: PIH is: 518: Origin = -243.4211 -243.4211 -243.4211 518: Size = 38 38 38 518: Spacing = 13.1579 13.1579 13.1579 518: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 518: Rt_study_warp: Warping m_img 518: plm_warp_itk: xform_to_itk_vf 518: plm_warp_itk: convert_to_itk 518: plm_warp_itk: warping... 518: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd) 518: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd 518: Rt_study_warp: warp and save ss. 518: Finished! 518: 518: STDERR: 518: Not an error 527: Not an error 159/578 Test #518: plm-warp-g ............................ Passed 0.76 sec test 549 Start 549: xf-invert-vf-trans-1 549: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-trans-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha;--iterations;10" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 549: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 549: Test timeout computed to be: 1500 160/578 Test #527: plm-xf-convert-a ...................... Passed 0.54 sec test 556 Start 556: proton-dose-1 556: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 556: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 556: Test timeout computed to be: 1500 427: RETVAL: 0 427: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 427: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 427: Launching registration worker thread 427: Inside registration worker thread 427: Doing registration stage 427: [1] xf_in->m_type = 0, xf_out->m_type = 0 427: RESAMPLE 1 1: (1 1 1), (1 1 1) 427: RESAMPLE 1 1: (1 1 1), (1 1 1) 427: volume_calc_grad complete. 427: Computing grid search extent. 427: Dimension 0, mo=0.8 F=(-25, 50) M=(-25, 50) 427: Dimension 1, mo=0.8 F=(-25, 50) M=(-25, 50) 427: Dimension 2, mo=0.8 F=(-25, 50) M=(-25, 50) 427: Native grid search extent: (-10, 10), (-10, 10), (-10, 10) 427: [0 0 0] 18945.9 * 427: Global grid search 427: [-10 -10 -10] 109949 427: [-6 -10 -10] 96800 427: [-2 -10 -10] 79011.9 427: [2 -10 -10] 66244.1 427: [6 -10 -10] 61932.6 427: [10 -10 -10] 63642.7 427: [-10 -6 -10] 95633.9 427: [-6 -6 -10] 81703.4 427: [-2 -6 -10] 63642.4 427: [2 -6 -10] 49838.6 427: [6 -6 -10] 43366.8 427: [10 -6 -10] 43154 427: [-10 -2 -10] 84842.6 427: [-6 -2 -10] 71049.9 427: [-2 -2 -10] 53542.3 427: [2 -2 -10] 39751 427: [6 -2 -10] 32450.7 427: [10 -2 -10] 31286.8 427: [-10 2 -10] 84829.9 427: [-6 2 -10] 71041.2 427: [-2 2 -10] 53536.6 427: [2 2 -10] 39746.7 427: [6 2 -10] 32446.9 427: [10 2 -10] 31283.5 427: [-10 6 -10] 95561.4 427: [-6 6 -10] 81658.4 427: [-2 6 -10] 63613.3 427: [2 6 -10] 49813.8 427: [6 6 -10] 43342.5 427: [10 6 -10] 43131.5 427: [-10 10 -10] 109668 427: [-6 10 -10] 96633.8 427: [-2 10 -10] 78907 427: [2 10 -10] 66152.1 427: [6 10 -10] 61839.3 427: [10 10 -10] 63556.7 427: [-10 -10 -6] 95633.9 427: [-6 -10 -6] 81703.4 427: [-2 -10 -6] 63642.4 427: [2 -10 -6] 49838.6 427: [6 -10 -6] 43366.8 427: [10 -10 -6] 43154 427: [-10 -6 -6] 82028.8 427: [-6 -6 -6] 67247.9 427: [-2 -6 -6] 48818.3 427: [2 -6 -6] 33916.9 427: [6 -6 -6] 25278 427: [10 -6 -6] 23165.8 427: [-10 -2 -6] 72112.1 427: [-6 -2 -6] 57467.9 427: [-2 -2 -6] 39558.4 427: [2 -2 -6] 24681.2 427: [6 -2 -6] 15293.3 * 427: [10 -2 -6] 12314.7 * 427: [-10 2 -6] 72100.9 427: [-6 2 -6] 57460.6 427: [-2 2 -6] 39554 427: [2 2 -6] 24678.2 427: [6 2 -6] 15291.1 427: [10 2 -6] 12313 * 427: [-10 6 -6] 81963.5 427: [-6 6 -6] 67208.4 427: [-2 6 -6] 48793.6 427: [2 6 -6] 33896.7 427: [6 6 -6] 25258.7 427: [10 6 -6] 23148.6 427: [-10 10 -6] 95379.4 427: [-6 10 -6] 81554.8 427: [-2 10 -6] 63550.9 427: [2 10 -6] 49759.6 427: [6 10 -6] 43287.7 427: [10 10 -6] 43082.4 427: [-10 -10 -2] 84842.6 427: [-6 -10 -2] 71049.9 427: [-2 -10 -2] 53542.3 427: [2 -10 -2] 39751 427: [6 -10 -2] 32450.7 427: [10 -10 -2] 31286.8 427: [-10 -6 -2] 72112.1 427: [-6 -6 -2] 57467.9 427: [-2 -6 -2] 39558.4 427: [2 -6 -2] 24681.2 427: [6 -6 -2] 15293.3 427: [10 -6 -2] 12314.7 427: [-10 -2 -2] 63010.9 427: [-6 -2 -2] 48498.1 427: [-2 -2 -2] 31072.4 427: [2 -2 -2] 16224.1 427: [6 -2 -2] 6155.79 * 427: [10 -2 -2] 2386.22 * 427: [-10 2 -2] 63000.9 427: [-6 2 -2] 48491.8 427: [-2 2 -2] 31068.8 427: [2 2 -2] 16221.9 427: [6 2 -2] 6154.44 427: [10 2 -2] 2385.44 * 427: [-10 6 -2] 72052.8 427: [-6 6 -2] 57432.4 427: [-2 6 -2] 39536.8 427: [2 6 -2] 24663.8 427: [6 6 -2] 15277.1 427: [10 6 -2] 12300.5 427: [-10 10 -2] 84610.1 427: [-6 10 -2] 70915.1 427: [-2 10 -2] 53460.4 427: [2 10 -2] 39681 427: [6 10 -2] 32381 427: [10 10 -2] 31224.4 427: [-10 -10 2] 84829.9 427: [-6 -10 2] 71041.2 427: [-2 -10 2] 53536.6 427: [2 -10 2] 39746.7 427: [6 -10 2] 32446.9 427: [10 -10 2] 31283.5 427: [-10 -6 2] 72100.9 427: [-6 -6 2] 57460.6 427: [-2 -6 2] 39554 427: [2 -6 2] 24678.2 427: [6 -6 2] 15291.1 427: [10 -6 2] 12313 427: [-10 -2 2] 63000.9 427: [-6 -2 2] 48491.8 427: [-2 -2 2] 31068.8 427: [2 -2 2] 16221.9 427: [6 -2 2] 6154.44 427: [10 -2 2] 2385.44 427: [-10 2 2] 62990.9 427: [-6 2 2] 48485.5 427: [-2 2 2] 31065.2 427: [2 2 2] 16219.7 427: [6 2 2] 6153.1 427: [10 2 2] 2384.66 * 427: [-10 6 2] 72041.7 427: [-6 6 2] 57425.2 427: [-2 6 2] 39532.4 427: [2 6 2] 24660.8 427: [6 6 2] 15274.9 427: [10 6 2] 12298.9 427: [-10 10 2] 84597.7 427: [-6 10 2] 70906.7 427: [-2 10 2] 53454.9 427: [2 10 2] 39676.9 427: [6 10 2] 32377.5 427: [10 10 2] 31221.4 427: [-10 -10 6] 95561.4 427: [-6 -10 6] 81658.4 427: [-2 -10 6] 63613.3 427: [2 -10 6] 49813.8 427: [6 -10 6] 43342.5 427: [10 -10 6] 43131.5 427: [-10 -6 6] 81963.5 427: [-6 -6 6] 67208.4 427: [-2 -6 6] 48793.6 427: [2 -6 6] 33896.7 427: [6 -6 6] 25258.7 427: [10 -6 6] 23148.6 427: [-10 -2 6] 72052.8 427: [-6 -2 6] 57432.4 427: [-2 -2 6] 39536.8 427: [2 -2 6] 24663.8 427: [6 -2 6] 15277.1 427: [10 -2 6] 12300.5 427: [-10 2 6] 72041.7 427: [-6 2 6] 57425.2 427: [-2 2 6] 39532.4 427: [2 2 6] 24660.8 427: [6 2 6] 15274.9 427: [10 2 6] 12298.9 427: [-10 6 6] 81898.9 427: [-6 6 6] 67169.4 427: [-2 6 6] 48769.5 427: [2 6 6] 33876.9 427: [6 6 6] 25240 427: [10 6 6] 23132 427: [-10 10 6] 95309.5 427: [-6 10 6] 81512.3 427: [-2 10 6] 63524.1 427: [2 10 6] 49737.2 427: [6 10 6] 43266 427: [10 10 6] 43062.8 427: [-10 -10 10] 109668 427: [-6 -10 10] 96633.8 427: [-2 -10 10] 78907 427: [2 -10 10] 66152.1 427: [6 -10 10] 61839.3 427: [10 -10 10] 63556.7 427: [-10 -6 10] 95379.4 427: [-6 -6 10] 81554.8 427: [-2 -6 10] 63550.9 427: [2 -6 10] 49759.6 427: [6 -6 10] 43287.7 427: [10 -6 10] 43082.4 427: [-10 -2 10] 84610.1 427: [-6 -2 10] 70915.1 427: [-2 -2 10] 53460.4 427: [2 -2 10] 39681 427: [6 -2 10] 32381 427: [10 -2 10] 31224.4 427: [-10 2 10] 84597.7 427: [-6 2 10] 70906.7 427: [-2 2 10] 53454.9 427: [2 2 10] 39676.9 427: [6 2 10] 32377.5 427: [10 2 10] 31221.4 427: [-10 6 10] 95309.5 427: [-6 6 10] 81512.3 427: [-2 6 10] 63524.1 427: [2 6 10] 49737.2 427: [6 6 10] 43266 427: [10 6 10] 43062.8 427: [-10 10 10] 109399 427: [-6 10 10] 96478.4 427: [-2 10 10] 78812.5 427: [2 10 10] 66070.4 427: [6 10 10] 61757.4 427: [10 10 10] 63483 427: [2] xf_out->m_type = 1, xf_in->m_type = 0 427: [1] xf_in->m_type = 1, xf_out->m_type = 0 427: RESAMPLE 1 1: (1 1 1), (1 1 1) 427: RESAMPLE 1 1: (1 1 1), (1 1 1) 427: volume_calc_grad complete. 427: Computing grid search extent. 427: Dimension 0, mo=0.8 F=(-25, 50) M=(-25, 50) 427: Dimension 1, mo=0.8 F=(-25, 50) M=(-25, 50) 427: Dimension 2, mo=0.8 F=(-25, 50) M=(-25, 50) 427: Native grid search extent: (-10, 10), (-10, 10), (-10, 10) 427: [10 2 2] 2384.66 * 427: Local grid search 427: [6.4 -1.6 -1.6] 4439.65 427: [8.8 -1.6 -1.6] 1771.35 * 427: [11.2 -1.6 -1.6] 1856.67 427: [13.6 -1.6 -1.6] 4787.36 427: [6.4 0.8 -1.6] 3954.1 427: [8.8 0.8 -1.6] 1244.73 * 427: [11.2 0.8 -1.6] 1300.61 427: [13.6 0.8 -1.6] 4226.79 427: [6.4 3.2 -1.6] 6520.93 427: [8.8 3.2 -1.6] 3949.58 427: [11.2 3.2 -1.6] 4155.43 427: [13.6 3.2 -1.6] 7178.92 427: [6.4 5.6 -1.6] 12337.8 427: [8.8 5.6 -1.6] 10089.9 427: [11.2 5.6 -1.6] 10636.9 427: [13.6 5.6 -1.6] 13872 427: [6.4 -1.6 0.8] 3954.1 427: [8.8 -1.6 0.8] 1244.73 * 427: [11.2 -1.6 0.8] 1300.61 427: [13.6 -1.6 0.8] 4226.79 427: [6.4 0.8 0.8] 3466.53 427: [8.8 0.8 0.8] 715.907 * 427: [11.2 0.8 0.8] 742.224 427: [13.6 0.8 0.8] 3663.89 427: [6.4 3.2 0.8] 6031.02 427: [8.8 3.2 0.8] 3418.24 427: [11.2 3.2 0.8] 3594.38 427: [13.6 3.2 0.8] 6613.31 427: [6.4 5.6 0.8] 11844.3 427: [8.8 5.6 0.8] 9554.72 427: [11.2 5.6 0.8] 10071.8 427: [13.6 5.6 0.8] 13302.2 427: [6.4 -1.6 3.2] 6520.93 427: [8.8 -1.6 3.2] 3949.58 427: [11.2 -1.6 3.2] 4155.43 427: [13.6 -1.6 3.2] 7178.92 427: [6.4 0.8 3.2] 6031.02 427: [8.8 0.8 3.2] 3418.24 427: [11.2 0.8 3.2] 3594.38 427: [13.6 0.8 3.2] 6613.31 427: [6.4 3.2 3.2] 8673.76 427: [8.8 3.2 3.2] 6203.3 427: [11.2 3.2 3.2] 6533.85 427: [13.6 3.2 3.2] 9652.77 427: [6.4 5.6 3.2] 14655.7 427: [8.8 5.6 3.2] 12518.1 427: [11.2 5.6 3.2] 13199.5 427: [13.6 5.6 3.2] 16535.7 427: [6.4 -1.6 5.6] 12337.8 427: [8.8 -1.6 5.6] 10089.9 427: [11.2 -1.6 5.6] 10636.9 427: [13.6 -1.6 5.6] 13872 427: [6.4 0.8 5.6] 11844.3 427: [8.8 0.8 5.6] 9554.72 427: [11.2 0.8 5.6] 10071.8 427: [13.6 0.8 5.6] 13302.2 427: [6.4 3.2 5.6] 14655.7 427: [8.8 3.2 5.6] 12518.1 427: [11.2 3.2 5.6] 13199.5 427: [13.6 3.2 5.6] 16535.7 427: [6.4 5.6 5.6] 20999.9 427: [8.8 5.6 5.6] 19216 427: [11.2 5.6 5.6] 20269.6 427: [13.6 5.6 5.6] 23835.8 427: [2] xf_out->m_type = 1, xf_in->m_type = 1 427: ** Registration worker thread finished. 427: Warping... 427: plm_warp_itk: xform_to_itk_vf 427: plm_warp_itk: convert_to_itk 427: plm_warp_itk: warping... 427: Saving image... 427: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.mha 427: Load: 0.0573699 427: Run: 2.51671 427: Save: 0.0136561 427: Total: 2.58774 427: Finished! 427: 427: STDERR: 427: Not an error 549: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 549: PARMS is xf-invert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--fixed;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha;--iterations;10 549: EXPECTED_ERRNO is 524: RETVAL: 0 524: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt) 524: Setting PIH from M_IMG 524: PIH is: 524: Origin = -25.0000 -25.0000 -25.0000 524: Size = 38 38 38 524: Spacing = 1.3158 1.3158 1.3158 524: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 524: Rt_study_warp: Warping m_img 524: plm_warp_itk: xform_to_itk_vf 524: plm_warp_itk: convert_to_itk 524: plm_warp_itk: warping... 524: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-img.nrrd) 524: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-img.nrrd 524: Rt_study_warp: warp and save ss. 524: Finished! 524: 524: STDERR: 524: Not an error 161/578 Test #427: plm-reg-trans-a ....................... Passed 3.43 sec test 559 Start 559: proton-dose-4a 559: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 559: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 559: Test timeout computed to be: 1500 162/578 Test #524: plm-warp-i ............................ Passed 0.77 sec test 562 Start 562: proton-dose-4d 562: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 562: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 562: Test timeout computed to be: 1500 556: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 556: PARMS is dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.txt 556: EXPECTED_ERRNO is 111: RETVAL: 0 111: STDOUT: Reconstructing... 111: Processing image 0 111: Processing image 1 111: Processing image 2 111: Processing image 3 111: Processing image 4 111: Processing image 5 111: Processing image 6 111: Processing image 7 111: Processing image 8 111: Processing image 9 111: Processing image 10 111: Processing image 11 111: Processing image 12 111: Processing image 13 111: Processing image 14 111: Processing image 15 111: Processing image 16 111: Processing image 17 111: Processing image 18 111: Processing image 19 111: I/O time (total) = 0.0030911 111: I/O time (per image) = 0.000154555 111: Filter time = 0 111: Filter time (per image) = 0 111: Backprojection time = 9.6267 111: Backprojection time (per image) = 0.481335 111: Writing output volume(s)... 111: done. 111: 111: 111: STDERR: 111: Not an error 163/578 Test #111: fdk-cpu-d ............................. Passed 10.56 sec test 565 Start 565: proton-dose-5a 565: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-5a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 565: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 565: Test timeout computed to be: 1500 559: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 559: PARMS is dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.txt 559: EXPECTED_ERRNO is 562: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 562: PARMS is dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.txt 562: EXPECTED_ERRNO is 565: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 565: PARMS is dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.txt 565: EXPECTED_ERRNO is 509: RETVAL: 0 509: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt) 509: bspline_xform_initialize 509: rdims = (3,3,3) 509: vox_per_rgn = (15,15,15) 509: cdims = (6 6 6) 509: Setting PIH from XFORM 509: PIH is: 509: Origin = -25.0000 -25.0000 -25.0000 509: Size = 38 38 38 509: Spacing = 1.3158 1.3158 1.3158 509: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 509: Rt_study_warp: Warping m_img 509: plm_warp_itk: xform_to_itk_vf 509: plm_warp_itk: convert_to_itk 509: plm_warp_itk: warping... 509: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha) 509: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha 509: Rt_study_warp: Saving vf. 509: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-vf.mha 509: Rt_study_warp: warp and save ss. 509: Finished! 509: 509: STDERR: 509: Not an error 164/578 Test #509: plm-warp-c ............................ Passed 1.17 sec test 568 Start 568: proton-dose-5d 568: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-5d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 568: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 568: Test timeout computed to be: 1500 568: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 568: PARMS is dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.txt 568: EXPECTED_ERRNO is 543: RETVAL: 0 543: STDOUT: bspline_xform_initialize 543: rdims = (1,1,1) 543: vox_per_rgn = (4,4,4) 543: cdims = (4 4 4) 543: about to xform_convert 543: Converting to (itk) vector field 543: did xform_convert 543: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-vf.nrrd 543: 543: STDERR: 543: Not an error 165/578 Test #543: plm-xf-convert-i ...................... Passed 0.48 sec test 571 Start 571: proton-dose-6a 571: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-6a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 571: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 571: Test timeout computed to be: 1500 571: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 571: PARMS is dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.txt 571: EXPECTED_ERRNO is 540: RETVAL: 0 540: STDOUT: about to xform_convert 540: Converting to (itk) vector field 540: did xform_convert 540: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd 540: 540: STDERR: 540: Not an error 166/578 Test #540: plm-xf-convert-h ...................... Passed 0.63 sec test 39 Start 39: rect-10 39: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-10" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-200 50 -50 50 -50 50" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 39: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 39: Test timeout computed to be: 1500 39: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 39: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-200 50 -50 50 -50 50 39: EXPECTED_ERRNO is 430: RETVAL: 0 430: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 430: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 430: Launching registration worker thread 430: Inside registration worker thread 430: Doing registration stage 430: [1] xf_in->m_type = 0, xf_out->m_type = 0 430: RESAMPLE 1 1: (1 1 1), (1 1 1) 430: RESAMPLE 1 1: (1 1 1), (1 1 1) 430: volume_calc_grad complete. 430: Computing grid search extent. 430: Dimension 0, mo=0.8 F=(-25, 50) M=(-25, 50) 430: Dimension 1, mo=0.8 F=(-25, 50) M=(-25, 50) 430: Dimension 2, mo=0.8 F=(-25, 50) M=(-25, 50) 430: Native grid search extent: (-10, 10), (-10, 10), (-10, 10) 430: [0 0 0] 18945.9 * 430: Global grid search 430: [-10 -10 -10] 109949 430: [-6 -10 -10] 96800 430: [-2 -10 -10] 79011.9 430: [2 -10 -10] 66244.1 430: [6 -10 -10] 61932.6 430: [10 -10 -10] 63642.7 430: [-10 -6 -10] 95633.9 430: [-6 -6 -10] 81703.4 430: [-2 -6 -10] 63642.4 430: [2 -6 -10] 49838.6 430: [6 -6 -10] 43366.8 430: [10 -6 -10] 43154 430: [-10 -2 -10] 84842.6 430: [-6 -2 -10] 71049.9 430: [-2 -2 -10] 53542.3 430: [2 -2 -10] 39751 430: [6 -2 -10] 32450.7 430: [10 -2 -10] 31286.8 430: [-10 2 -10] 84829.9 430: [-6 2 -10] 71041.2 430: [-2 2 -10] 53536.6 430: [2 2 -10] 39746.7 430: [6 2 -10] 32446.9 430: [10 2 -10] 31283.5 430: [-10 6 -10] 95561.4 430: [-6 6 -10] 81658.4 430: [-2 6 -10] 63613.3 430: [2 6 -10] 49813.8 430: [6 6 -10] 43342.5 430: [10 6 -10] 43131.5 430: [-10 10 -10] 109668 430: [-6 10 -10] 96633.8 430: [-2 10 -10] 78907 430: [2 10 -10] 66152.1 430: [6 10 -10] 61839.3 430: [10 10 -10] 63556.7 430: [-10 -10 -6] 95633.9 430: [-6 -10 -6] 81703.4 430: [-2 -10 -6] 63642.4 430: [2 -10 -6] 49838.6 430: [6 -10 -6] 43366.8 430: [10 -10 -6] 43154 430: [-10 -6 -6] 82028.8 430: [-6 -6 -6] 67247.9 430: [-2 -6 -6] 48818.3 430: [2 -6 -6] 33916.9 430: [6 -6 -6] 25278 430: [10 -6 -6] 23165.8 430: [-10 -2 -6] 72112.1 430: [-6 -2 -6] 57467.9 430: [-2 -2 -6] 39558.4 430: [2 -2 -6] 24681.2 430: [6 -2 -6] 15293.3 * 430: [10 -2 -6] 12314.7 * 430: [-10 2 -6] 72100.9 430: [-6 2 -6] 57460.6 430: [-2 2 -6] 39554 430: [2 2 -6] 24678.2 430: [6 2 -6] 15291.1 430: [10 2 -6] 12313 * 430: [-10 6 -6] 81963.5 430: [-6 6 -6] 67208.4 430: [-2 6 -6] 48793.6 430: [2 6 -6] 33896.7 430: [6 6 -6] 25258.7 430: [10 6 -6] 23148.6 430: [-10 10 -6] 95379.4 430: [-6 10 -6] 81554.8 430: [-2 10 -6] 63550.9 430: [2 10 -6] 49759.6 430: [6 10 -6] 43287.7 430: [10 10 -6] 43082.4 430: [-10 -10 -2] 84842.6 430: [-6 -10 -2] 71049.9 430: [-2 -10 -2] 53542.3 430: [2 -10 -2] 39751 430: [6 -10 -2] 32450.7 430: [10 -10 -2] 31286.8 430: [-10 -6 -2] 72112.1 430: [-6 -6 -2] 57467.9 430: [-2 -6 -2] 39558.4 430: [2 -6 -2] 24681.2 430: [6 -6 -2] 15293.3 430: [10 -6 -2] 12314.7 430: [-10 -2 -2] 63010.9 430: [-6 -2 -2] 48498.1 430: [-2 -2 -2] 31072.4 430: [2 -2 -2] 16224.1 430: [6 -2 -2] 6155.79 * 430: [10 -2 -2] 2386.22 * 430: [-10 2 -2] 63000.9 430: [-6 2 -2] 48491.8 430: [-2 2 -2] 31068.8 430: [2 2 -2] 16221.9 430: [6 2 -2] 6154.44 430: [10 2 -2] 2385.44 * 430: [-10 6 -2] 72052.8 430: [-6 6 -2] 57432.4 430: [-2 6 -2] 39536.8 430: [2 6 -2] 24663.8 430: [6 6 -2] 15277.1 430: [10 6 -2] 12300.5 430: [-10 10 -2] 84610.1 430: [-6 10 -2] 70915.1 430: [-2 10 -2] 53460.4 430: [2 10 -2] 39681 430: [6 10 -2] 32381 430: [10 10 -2] 31224.4 430: [-10 -10 2] 84829.9 430: [-6 -10 2] 71041.2 430: [-2 -10 2] 53536.6 430: [2 -10 2] 39746.7 430: [6 -10 2] 32446.9 430: [10 -10 2] 31283.5 430: [-10 -6 2] 72100.9 430: [-6 -6 2] 57460.6 430: [-2 -6 2] 39554 430: [2 -6 2] 24678.2 430: [6 -6 2] 15291.1 430: [10 -6 2] 12313 430: [-10 -2 2] 63000.9 430: [-6 -2 2] 48491.8 430: [-2 -2 2] 31068.8 430: [2 -2 2] 16221.9 430: [6 -2 2] 6154.44 430: [10 -2 2] 2385.44 430: [-10 2 2] 62990.9 430: [-6 2 2] 48485.5 430: [-2 2 2] 31065.2 430: [2 2 2] 16219.7 430: [6 2 2] 6153.1 430: [10 2 2] 2384.66 * 430: [-10 6 2] 72041.7 430: [-6 6 2] 57425.2 430: [-2 6 2] 39532.4 430: [2 6 2] 24660.8 430: [6 6 2] 15274.9 430: [10 6 2] 12298.9 430: [-10 10 2] 84597.7 430: [-6 10 2] 70906.7 430: [-2 10 2] 53454.9 430: [2 10 2] 39676.9 430: [6 10 2] 32377.5 430: [10 10 2] 31221.4 430: [-10 -10 6] 95561.4 430: [-6 -10 6] 81658.4 430: [-2 -10 6] 63613.3 430: [2 -10 6] 49813.8 430: [6 -10 6] 43342.5 430: [10 -10 6] 43131.5 430: [-10 -6 6] 81963.5 430: [-6 -6 6] 67208.4 430: [-2 -6 6] 48793.6 430: [2 -6 6] 33896.7 430: [6 -6 6] 25258.7 430: [10 -6 6] 23148.6 430: [-10 -2 6] 72052.8 430: [-6 -2 6] 57432.4 430: [-2 -2 6] 39536.8 430: [2 -2 6] 24663.8 430: [6 -2 6] 15277.1 430: [10 -2 6] 12300.5 430: [-10 2 6] 72041.7 430: [-6 2 6] 57425.2 430: [-2 2 6] 39532.4 430: [2 2 6] 24660.8 430: [6 2 6] 15274.9 430: [10 2 6] 12298.9 430: [-10 6 6] 81898.9 430: [-6 6 6] 67169.4 430: [-2 6 6] 48769.5 430: [2 6 6] 33876.9 430: [6 6 6] 25240 430: [10 6 6] 23132 430: [-10 10 6] 95309.5 430: [-6 10 6] 81512.3 430: [-2 10 6] 63524.1 430: [2 10 6] 49737.2 430: [6 10 6] 43266 430: [10 10 6] 43062.8 430: [-10 -10 10] 109668 430: [-6 -10 10] 96633.8 430: [-2 -10 10] 78907 430: [2 -10 10] 66152.1 430: [6 -10 10] 61839.3 430: [10 -10 10] 63556.7 430: [-10 -6 10] 95379.4 430: [-6 -6 10] 81554.8 430: [-2 -6 10] 63550.9 430: [2 -6 10] 49759.6 430: [6 -6 10] 43287.7 430: [10 -6 10] 43082.4 430: [-10 -2 10] 84610.1 430: [-6 -2 10] 70915.1 430: [-2 -2 10] 53460.4 430: [2 -2 10] 39681 430: [6 -2 10] 32381 430: [10 -2 10] 31224.4 430: [-10 2 10] 84597.7 430: [-6 2 10] 70906.7 430: [-2 2 10] 53454.9 430: [2 2 10] 39676.9 430: [6 2 10] 32377.5 430: [10 2 10] 31221.4 430: [-10 6 10] 95309.5 430: [-6 6 10] 81512.3 430: [-2 6 10] 63524.1 430: [2 6 10] 49737.2 430: [6 6 10] 43266 430: [10 6 10] 43062.8 430: [-10 10 10] 109399 430: [-6 10 10] 96478.4 430: [-2 10 10] 78812.5 430: [2 10 10] 66070.4 430: [6 10 10] 61757.4 430: [10 10 10] 63483 430: [2] xf_out->m_type = 1, xf_in->m_type = 0 430: Doing registration stage 430: [1] xf_in->m_type = 1, xf_out->m_type = 0 430: RESAMPLE 1 1: (1 1 1), (1 1 1) 430: RESAMPLE 1 1: (1 1 1), (1 1 1) 430: volume_calc_grad complete. 430: Computing grid search extent. 430: Dimension 0, mo=0.8 F=(-25, 50) M=(-25, 50) 430: Dimension 1, mo=0.8 F=(-25, 50) M=(-25, 50) 430: Dimension 2, mo=0.8 F=(-25, 50) M=(-25, 50) 430: Native grid search extent: (-10, 10), (-10, 10), (-10, 10) 430: [10 2 2] 2384.66 * 430: Local grid search 430: [6.4 -1.6 -1.6] 4439.65 430: [8.8 -1.6 -1.6] 1771.35 * 430: [11.2 -1.6 -1.6] 1856.67 430: [13.6 -1.6 -1.6] 4787.36 430: [6.4 0.8 -1.6] 3954.1 430: [8.8 0.8 -1.6] 1244.73 * 430: [11.2 0.8 -1.6] 1300.61 430: [13.6 0.8 -1.6] 4226.79 430: [6.4 3.2 -1.6] 6520.93 430: [8.8 3.2 -1.6] 3949.58 430: [11.2 3.2 -1.6] 4155.43 430: [13.6 3.2 -1.6] 7178.92 430: [6.4 5.6 -1.6] 12337.8 430: [8.8 5.6 -1.6] 10089.9 430: [11.2 5.6 -1.6] 10636.9 430: [13.6 5.6 -1.6] 13872 430: [6.4 -1.6 0.8] 3954.1 430: [8.8 -1.6 0.8] 1244.73 * 430: [11.2 -1.6 0.8] 1300.61 430: [13.6 -1.6 0.8] 4226.79 430: [6.4 0.8 0.8] 3466.53 430: [8.8 0.8 0.8] 715.907 * 430: [11.2 0.8 0.8] 742.224 430: [13.6 0.8 0.8] 3663.89 430: [6.4 3.2 0.8] 6031.02 430: [8.8 3.2 0.8] 3418.24 430: [11.2 3.2 0.8] 3594.38 430: [13.6 3.2 0.8] 6613.31 430: [6.4 5.6 0.8] 11844.3 430: [8.8 5.6 0.8] 9554.72 430: [11.2 5.6 0.8] 10071.8 430: [13.6 5.6 0.8] 13302.2 430: [6.4 -1.6 3.2] 6520.93 430: [8.8 -1.6 3.2] 3949.58 430: [11.2 -1.6 3.2] 4155.43 430: [13.6 -1.6 3.2] 7178.92 430: [6.4 0.8 3.2] 6031.02 430: [8.8 0.8 3.2] 3418.24 430: [11.2 0.8 3.2] 3594.38 430: [13.6 0.8 3.2] 6613.31 430: [6.4 3.2 3.2] 8673.76 430: [8.8 3.2 3.2] 6203.3 430: [11.2 3.2 3.2] 6533.85 430: [13.6 3.2 3.2] 9652.77 430: [6.4 5.6 3.2] 14655.7 430: [8.8 5.6 3.2] 12518.1 430: [11.2 5.6 3.2] 13199.5 430: [13.6 5.6 3.2] 16535.7 430: [6.4 -1.6 5.6] 12337.8 430: [8.8 -1.6 5.6] 10089.9 430: [11.2 -1.6 5.6] 10636.9 430: [13.6 -1.6 5.6] 13872 430: [6.4 0.8 5.6] 11844.3 430: [8.8 0.8 5.6] 9554.72 430: [11.2 0.8 5.6] 10071.8 430: [13.6 0.8 5.6] 13302.2 430: [6.4 3.2 5.6] 14655.7 430: [8.8 3.2 5.6] 12518.1 430: [11.2 3.2 5.6] 13199.5 430: [13.6 3.2 5.6] 16535.7 430: [6.4 5.6 5.6] 20999.9 430: [8.8 5.6 5.6] 19216 430: [11.2 5.6 5.6] 20269.6 430: [13.6 5.6 5.6] 23835.8 430: [2] xf_out->m_type = 1, xf_in->m_type = 1 430: ** Registration worker thread finished. 430: Warping... 430: plm_warp_itk: xform_to_itk_vf 430: plm_warp_itk: convert_to_itk 430: plm_warp_itk: warping... 430: Saving image... 430: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.mha 430: Load: 0.141932 430: Run: 2.46007 430: Save: 0.034543 430: Total: 2.63654 430: Finished! 430: 430: STDERR: 430: Not an error 549: RETVAL: 0 549: STDOUT: Paste and smooth loop 549: Iteration 0/10 549: Convolving 549: Iteration 1/10 549: Convolving 549: Iteration 2/10 549: Convolving 549: Iteration 3/10 549: Convolving 549: Iteration 4/10 549: Convolving 549: Iteration 5/10 549: Convolving 549: Iteration 6/10 549: Convolving 549: Iteration 7/10 549: Convolving 549: Iteration 8/10 549: Convolving 549: Iteration 9/10 549: Convolving 549: Done. 549: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha 549: 549: STDERR: 549: Not an error 531: RETVAL: 0 531: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-xf-convert.txt) 531: bspline_xform_initialize 531: rdims = (2,2,2) 531: vox_per_rgn = (11,11,11) 531: cdims = (5 5 5) 531: Setting PIH from XFORM 531: PIH is: 531: Origin = -24.3421 -24.3421 -24.3421 531: Size = 19 19 19 531: Spacing = 2.6316 2.6316 2.6316 531: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 531: Rt_study_warp: Warping m_img 531: Running: plm_warp_native 531: Converting input image... 531: Converting xform... 531: bspline_xform_initialize 531: rdims = (2,2,2) 531: vox_per_rgn = (11,11,11) 531: cdims = (5 5 5) 531: Creating output vf... 531: Creating output volume... 531: Running native warper... 531: bspline_warp complete. 531: Back convert to original type... 531: > Convert vf to itk 531: > Conversion complete. 531: plm_warp_native is complete. 531: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd) 531: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd 531: Rt_study_warp: warp and save ss. 531: Finished! 531: 531: STDERR: 167/578 Test #430: plm-reg-trans-b ....................... Passed 3.37 sec test 42 Start 42: rect-11 42: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-11" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;0;--foreground;-1000;--rect-size;-40 60 -40 60 -40 60" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 42: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 42: Test timeout computed to be: 1500 531: Not an error 168/578 Test #531: plm-xf-convert-d-warp-1 ............... Passed 0.81 sec test 51 Start 51: rect-19 51: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-19" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-19.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-150 150 -150 150 -150 150" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 51: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 51: Test timeout computed to be: 1500 169/578 Test #549: xf-invert-vf-trans-1 .................. Passed 0.50 sec test 53 Start 53: rectarr-01 53: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-01" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-5 5 5 15 -5 5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 53: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 53: Test timeout computed to be: 1500 546: RETVAL: 0 546: STDOUT: Paste and smooth loop 546: Iteration 0/20 546: Convolving 546: Iteration 1/20 546: Convolving 546: Iteration 2/20 546: Convolving 546: Iteration 3/20 546: Convolving 546: Iteration 4/20 546: Convolving 546: Iteration 5/20 546: Convolving 546: Iteration 6/20 546: Convolving 546: Iteration 7/20 546: Convolving 546: Iteration 8/20 546: Convolving 546: Iteration 9/20 546: Convolving 546: Iteration 10/20 546: Convolving 546: Iteration 11/20 546: Convolving 546: Iteration 12/20 546: Convolving 546: Iteration 13/20 546: Convolving 546: Iteration 14/20 546: Convolving 546: Iteration 15/20 546: Convolving 546: Iteration 16/20 546: Convolving 546: Iteration 17/20 546: Convolving 546: Iteration 18/20 546: Convolving 546: Iteration 19/20 546: Convolving 546: Done. 546: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha 546: 546: STDERR: 546: Not an error 42: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 42: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;0;--foreground;-1000;--rect-size;-40 60 -40 60 -40 60 42: EXPECTED_ERRNO is 170/578 Test #546: xf-invert-vf-zero-1 ................... Passed 0.65 sec test 54 Start 54: rectarr-02 54: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-02" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-10 0 5 15 -5 5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 54: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 54: Test timeout computed to be: 1500 51: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 51: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-19.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-150 150 -150 150 -150 150 51: EXPECTED_ERRNO is 54: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 54: PARMS is synth;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-10 0 5 15 -5 5 54: EXPECTED_ERRNO is 409: RETVAL: 0 409: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha 409: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha 409: Launching registration worker thread 409: Inside registration worker thread 409: Doing registration stage 409: [1] xf_in->m_type = 0, xf_out->m_type = 0 409: Fixed image for this stage: 409: Dim = 19 19 19 409: Origin = -236.842 -236.842 -236.842 409: Spacing = 26.3158 26.3158 26.3158 409: Direction Cosines = 409: 1 0 0 409: 0 1 0 409: 0 0 1 409: Moving image for this stage: 409: Dim = 19 19 19 409: Origin = -236.842 -236.842 -236.842 409: Spacing = 26.3158 26.3158 26.3158 409: Direction Cosines = 409: 1 0 0 409: 0 1 0 409: 0 0 1 409: Initial Parameters = [0, 0, 0, 0, 0, 0] 409: Starting ITK registration 409: StartEvent: [0, 0, 0, 0, 0, 0] 409: MSE [ 0, 0,10.00] 2961.438 [0, -8.106231689300783e-8, 8.106231689440044e-8, -9.999999999999998, -4.351980104194578e-15, -4.526059308362361e-15] 409: :: [0, 0, 0, 0, 0, 0] 409: * 409: MSE [ 1, 1,10.00] 2086.091 [-2.220551443958773e-18, -3.349986047566596e-7, 3.3499860572590214e-7, -19.999999999999872, -9.942357122250369e-7, -9.942357133705733e-7] -875.35 409: :: [0, -8.106231689300783e-8, 8.106231689440044e-8, -9.999999999999998, -4.351980104194578e-15, -4.526059308362361e-15] 409: * 409: MSE [ 2, 2, 5.00] 1944.674 [-1.8497462815408412e-17, -0.0000020387763678231676, 0.000002038776387402911, -15.000000000094076, -0.00002242796102608393, -0.000022427960967426466] -141.42 409: :: [-2.220551443958773e-18, -3.349986047566596e-7, 3.3499860572590214e-7, -19.999999999999872, -9.942357122250369e-7, -9.942357133705733e-7] 409: * 409: MSE [ 3, 3, 2.50] 1989.993 [-7.843423609559688e-17, -0.000008253984619629492, 0.000008253984726215031, -17.499999999592845, -0.00005557255691122543, -0.00005557255639912923] 45.32 409: MSE [ 4, 4, 2.50] 1946.484 [-1.448950225512847e-14, -0.0010533617729250892, 0.0010533617928090062, -19.999966305224685, -0.008992370045635845, -0.008992369921077301] -43.51 409: EndEvent: [-1.448950225512847e-14, -0.0010533617729250892, 0.0010533617928090062, -19.999966305224685, -0.008992370045635845, -0.008992369921077301] 409: VersorRigid3DTransformOptimizer: Maximum number of iterations (5) exceeded. 409: ITK registration complete 409: [2] xf_out->m_type = 2, xf_in->m_type = 0 409: Warping... 409: plm_warp_itk: xform_to_itk_vf 409: plm_warp_itk: convert_to_itk 409: plm_warp_itk: warping... 409: Saving image... 409: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-stage-1.mha 409: Doing registration stage 409: [1] xf_in->m_type = 2, xf_out->m_type = 0 409: SUBSAMPLE: (1 1 1), (1 1 1) 409: volume_calc_grad complete. 409: kerx: 0.0000000000 1.0000000000 0.0000000000 409: kery: 0.0000000000 1.0000000000 0.0000000000 409: kerz: 0.0000000000 1.0000000000 0.0000000000 409: MSE [ 0] 4770.7 (0.947) [ 0.971 secs] 409: MSE [ 1] 4770.7 (0.947) [ 0.632 secs] 409: MSE [ 2] 4770.7 (0.947) [ 0.324 secs] 409: MSE [ 3] 4770.7 (0.947) [ 0.425 secs] 409: MSE [ 4] 4770.7 (0.947) [ 0.559 secs] 409: Time for 5 iterations = 2.910735 (0.582147 sec / it) 409: [2] xf_out->m_type = 10, xf_in->m_type = 2 409: ** Registration worker thread finished. 409: Warping... 409: plm_warp_itk: xform_to_itk_vf 409: plm_warp_itk: convert_to_itk 409: plm_warp_itk: warping... 409: Saving image... 409: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-img.nrrd 409: Saving vf... 409: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-vf.nrrd 409: Load: 0.184194 409: Run: 3.11153 409: Save: 0.039763 409: Total: 3.33549 409: Finished! 409: 409: STDERR: 409: Not an error 53: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 53: PARMS is synth;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-5 5 5 15 -5 5 53: EXPECTED_ERRNO is 171/578 Test #409: plm-reg-multi-a ....................... Passed 4.71 sec test 55 Start 55: rectarr-m-01 55: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-m-01" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--fixed;rectarr-01-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha;--output-type;uchar;--pattern;rect;--background;0;--foreground;1;--rect-size;-13 13 -20 0 -13 13" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 55: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 55: Test timeout computed to be: 1500 55: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 55: PARMS is synth;--fixed;rectarr-01-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha;--output-type;uchar;--pattern;rect;--background;0;--foreground;1;--rect-size;-13 13 -20 0 -13 13 55: EXPECTED_ERRNO is 39: RETVAL: 0 39: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10.mha 39: 39: STDERR: 39: Not an error 172/578 Test #39: rect-10 ............................... Passed 0.38 sec test 56 Start 56: rectarr-m-02 56: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-m-02" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--fixed;rectarr-01-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-02.mha;--output-type;uchar;--pattern;rect;--background;0;--foreground;1;--rect-size;-13 13 0 20 -13 13" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 56: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 56: Test timeout computed to be: 1500 375: RETVAL: 0 375: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha 375: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha 375: Launching registration worker thread 375: Inside registration worker thread 375: Doing registration stage 375: [1] xf_in->m_type = 0, xf_out->m_type = 0 375: RESAMPLE 1 1: (1 1 1), (1 1 1) 375: RESAMPLE 1 1: (1 1 1), (1 1 1) 375: volume_calc_grad complete. 375: bspline_xform_initialize 375: Warning: vox_per_rgn was less than 4. 375: Warning: vox_per_rgn was less than 4. 375: Warning: vox_per_rgn was less than 4. 375: rdims = (10,10,10) 375: vox_per_rgn = (4,4,4) 375: cdims = (13 13 13) 375: Algorithm flavor = g 375: Threading = 0 375: Regularization: flavor = a lambda = 1.000000 375: >> Checking JH allocation 375: BSPLINE PARMS 375: max_its = 5 375: max_feval = 5 375: BSPLINE XFORM HEADER 375: vox_per_rgn = 4 4 4 375: roi_offset = 0 0 0 375: roi_dim = 38 38 38 375: img_dc = 1 0 0 0 1 0 0 0 1 375: BST METRICS 375: MET 110100 MSE 1.000000 375: Setting nmax, mmax = 6591 83 375: >>> START 375: This problem is unconstrained. 375: [ 0, 0] SCORE 5540.166 NV 54872 GM 0.000 GN 28.2 [ 1.510 s ] 375: MSE 5540.166 RM 0.000 [ 0.088 | 1.422 ] 375: CMIN 0.00 CAVG 0.00 CMAX 0.00 375: LSD 0.00 375: [ 0, 1] SCORE 5484.185 NV 54872 GM 0.045 GN 27.7 [ 1.212 s ] 375: MSE 5484.124 RM 0.061 [ 0.058 | 1.153 ] 375: CMIN -0.16 CAVG -0.00 CMAX 0.22 375: LSD 1.00 375: [ 0, 2] SCORE 5267.761 NV 54872 GM 0.224 GN 25.8 [ 0.470 s ] 375: MSE 5266.236 RM 1.525 [ 0.029 | 0.441 ] 375: CMIN -0.81 CAVG 0.00 CMAX 1.12 375: LSD 5.00 375: [ 0, 3] SCORE 4511.430 NV 54872 GM 0.928 GN 18.4 [ 0.425 s ] 375: MSE 4484.536 RM 26.894 [ 0.023 | 0.401 ] 375: CMIN -3.39 CAVG 0.00 CMAX 4.70 375: LSD 21.00 375: [ 1, 4] SCORE 3229.400 NV 54872 GM 1.898 GN 2.39 [ 0.459 s ] 375: MSE 3018.981 RM 210.419 [ 0.022 | 0.438 ] 375: CMIN -9.73 CAVG -0.00 CMAX 13.18 375: LSD 40.25 375: [ 2, 5] SCORE 3185.099 NV 54872 GM 4.098 GN 2.08 [ 0.626 s ] 375: MSE 2976.101 RM 208.998 [ 0.021 | 0.604 ] 375: CMIN -9.60 CAVG -0.00 CMAX 13.44 375: LSD 5.50 375: [2] xf_out->m_type = 9, xf_in->m_type = 0 375: ** Registration worker thread finished. 375: Writing transformation ... 375: Warping... 375: Running: plm_warp_native 375: Converting input image... 375: Converting xform... 375: bspline_xform_initialize 375: rdims = (10,10,10) 375: vox_per_rgn = (4,4,4) 375: cdims = (13 13 13) 375: Creating output vf... 375: Creating output volume... 375: Running native warper... 375: bspline_warp complete. 375: Back convert to original type... 375: > Convert vf to itk 375: > Conversion complete. 375: plm_warp_native is complete. 375: Saving image... 375: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-img.mha 375: Saving vf... 375: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-vf.mha 375: Load: 0.278676 375: Run: 4.98448 375: Save: 0.104934 375: Total: 5.36809 375: Finished! 375: 375: STDERR: 375: Not an error 173/578 Test #375: plm-bsp-regularize-numeric ............ Passed 6.43 sec test 61 Start 61: roi-1 61: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=roi-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/roi-1.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;0 300 -300 300 -300 300" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 61: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 61: Test timeout computed to be: 1500 56: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 56: PARMS is synth;--fixed;rectarr-01-a.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-02.mha;--output-type;uchar;--pattern;rect;--background;0;--foreground;1;--rect-size;-13 13 0 20 -13 13 56: EXPECTED_ERRNO is 61: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 61: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/roi-1.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;0 300 -300 300 -300 300 61: EXPECTED_ERRNO is 42: RETVAL: 0 42: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11.mha 42: 42: STDERR: 42: Not an error 174/578 Test #42: rect-11 ............................... Passed 0.40 sec test 65 Start 65: sphere-4 65: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-4" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-4.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;150 150 150" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 65: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 65: Test timeout computed to be: 1500 534: RETVAL: 0 534: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm) 534: BSplineDeformableTransform (0x55d8e449cf00) 534: RTTI typeinfo: itk::BSplineDeformableTransform 534: Reference Count: 3 534: Modified Time: 1488 534: Debug: Off 534: Object Name: 534: Observers: 534: none 534: CoefficientImage: [ 0x55d8e44982d0, 0x55d8e44992f0, 0x55d8e4497550 ] 534: ValidRegion: ImageRegion (0x55d8e449d050) 534: Dimension: 3 534: Index: [1, 1, 1] 534: Size: [3, 3, 3] 534: 534: BulkTransform: 0x55d8e427a9b0 534: WeightsFunction: 0x55d8e42f3630 534: BulkTransformType: IdentityTransform 534: GridOrigin: [-53.2895, -53.2895, -53.2895] 534: GridSpacing: [28.9474, 28.9474, 28.9474] 534: GridDirection: 1 0 0 534: 0 1 0 534: 0 0 1 534: 534: GridRegion: ImageRegion (0x55d8e44984d8) 534: Dimension: 3 534: Index: [0, 0, 0] 534: Size: [5, 5, 5] 534: 534: Setting PIH from M_IMG 534: PIH is: 534: Origin = -25.0000 -25.0000 -25.0000 534: Size = 38 38 38 534: Spacing = 1.3158 1.3158 1.3158 534: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 534: Rt_study_warp: Warping m_img 534: plm_warp_itk: xform_to_itk_vf 534: plm_warp_itk: convert_to_itk 534: plm_warp_itk: warping... 534: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd) 534: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd 534: Rt_study_warp: warp and save ss. 534: Finished! 534: 534: STDERR: 534: Not an error 175/578 Test #534: plm-xf-convert-d-warp-2 ............... Passed 1.15 sec test 77 Start 77: vf-zero-stats 77: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-zero-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 77: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 77: Test timeout computed to be: 1500 65: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 65: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-4.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;150 150 150 65: EXPECTED_ERRNO is 77: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 77: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha 77: EXPECTED_ERRNO is 51: RETVAL: 0 51: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-19.mha 51: 51: STDERR: 51: Not an error 176/578 Test #51: rect-19 ............................... Passed 0.52 sec test 79 Start 79: vf-trans-1-stats 79: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-trans-1-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 79: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 79: Test timeout computed to be: 1500 54: RETVAL: 0 54: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha 54: 54: STDERR: 54: Not an error 177/578 Test #54: rectarr-02 ............................ Passed 0.48 sec test 81 Start 81: vf-trans-2-stats 81: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-trans-2-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 81: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 81: Test timeout computed to be: 1500 79: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 79: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha 79: EXPECTED_ERRNO is 81: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 81: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha 81: EXPECTED_ERRNO is 61: RETVAL: 0 61: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/roi-1.mha 61: 61: STDERR: 61: Not an error 53: RETVAL: 0 53: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha 53: 53: STDERR: 178/578 Test #61: roi-1 ................................. Passed 0.37 sec test 83 Start 83: vf-radial-1-stats 83: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-radial-1-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 83: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 83: Test timeout computed to be: 1500 53: Not an error 55: RETVAL: 0 55: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha 55: 55: STDERR: 55: Not an error 179/578 Test #53: rectarr-01 ............................ Passed 0.63 sec test 85 Start 85: plm-compare-a 85: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compare-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 85: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 85: Test timeout computed to be: 1500 180/578 Test #55: rectarr-m-01 .......................... Passed 0.57 sec test 87 Start 87: plm-compare-b 87: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compare-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 87: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 87: Test timeout computed to be: 1500 83: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 83: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha 83: EXPECTED_ERRNO is 85: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 85: PARMS is compare;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 85: EXPECTED_ERRNO is 87: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 87: PARMS is compare;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha 87: EXPECTED_ERRNO is 77: RETVAL: 0 77: STDOUT: Min: 0.000 0.000 0.000 77: Mean: 0.000 0.000 0.000 77: Max: 0.000 0.000 0.000 77: Mean abs: 0.000 0.000 0.000 77: Ave len: 0.000 77: Jacobian: MINJAC 1 MAXJAC 1 77: Energy: MINDIL 0 MAXDIL 0 77: MAXSTRAIN 0 TOTSTRAIN 0 77: Second derivatives: MINSECDER 0 MAXSECDER 0 77: AVESECDER 0 INTSECDER 0 77: Max second derivative at: (1 1 1) 77: 77: STDERR: 77: Not an error 181/578 Test #77: vf-zero-stats ......................... Passed 0.47 sec test 89 Start 89: plm-compare-c 89: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compare-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 89: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 89: Test timeout computed to be: 1500 89: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 89: PARMS is compare;--mask;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha 89: EXPECTED_ERRNO is 56: RETVAL: 0 56: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-02.mha 56: 56: STDERR: 56: Not an error 182/578 Test #56: rectarr-m-02 .......................... Passed 0.69 sec test 92 Start 92: plm-diff-a-stats 92: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-diff-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 92: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 92: Test timeout computed to be: 1500 65: RETVAL: 0 65: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-4.mha 65: 65: STDERR: 65: Not an error 92: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 92: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha 92: EXPECTED_ERRNO is 183/578 Test #65: sphere-4 .............................. Passed 0.65 sec test 95 Start 95: plm-diff-b-stats 95: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-diff-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 95: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 95: Test timeout computed to be: 1500 95: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 95: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha 95: EXPECTED_ERRNO is 81: RETVAL: 0 81: STDOUT: Min: 0.000 10.000 0.000 81: Mean: 0.000 10.000 0.000 81: Max: 0.000 10.000 0.000 81: Mean abs: 0.000 10.000 0.000 81: Ave len: 10.000 81: Jacobian: MINJAC 1 MAXJAC 1 81: Energy: MINDIL 0 MAXDIL 0 81: MAXSTRAIN 0 TOTSTRAIN 0 81: Second derivatives: MINSECDER 0 MAXSECDER 0 81: AVESECDER 0 INTSECDER 0 81: Max second derivative at: (1 1 1) 81: 81: STDERR: 81: Not an error 184/578 Test #81: vf-trans-2-stats ...................... Passed 0.62 sec test 97 Start 97: demons-a 97: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=demons-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/demons" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=-m;50;-s;3;-f;5 5 5;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/demons-a.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 97: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 97: Test timeout computed to be: 1500 97: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/demons 97: PARMS is -m;50;-s;3;-f;5 5 5;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/demons-a.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 97: EXPECTED_ERRNO is 83: RETVAL: 0 83: STDOUT: Min: -9.993 -9.993 -9.993 83: Mean: 0.000 0.000 0.000 83: Max: 9.993 9.993 9.993 83: Mean abs: 5.157 5.157 5.157 83: Ave len: 9.998 83: Jacobian: MINJAC 1.05079 MAXJAC 2.37037 83: Energy: MINDIL 0.0502 MAXDIL 1 83: MAXSTRAIN 1.5 TOTSTRAIN 5055.08 83: Second derivatives: MINSECDER 0 MAXSECDER 0.114 83: AVESECDER 0.000227 INTSECDER 2.84e+04 83: Max second derivative at: (20 19 17) 83: 83: STDERR: 83: Not an error 185/578 Test #83: vf-radial-1-stats ..................... Passed 0.56 sec test 100 Start 100: drr-a-stats 100: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a/out_0010.pfm" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 100: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 100: Test timeout computed to be: 1500 79: RETVAL: 0 79: STDOUT: Min: 10.000 0.000 0.000 79: Mean: 10.000 0.000 0.000 79: Max: 10.000 0.000 0.000 79: Mean abs: 10.000 0.000 0.000 79: Ave len: 10.000 79: Jacobian: MINJAC 1 MAXJAC 1 79: Energy: MINDIL 0 MAXDIL 0 79: MAXSTRAIN 0 TOTSTRAIN 0 79: Second derivatives: MINSECDER 0 MAXSECDER 0 79: AVESECDER 0 INTSECDER 0 79: Max second derivative at: (1 1 1) 79: 79: STDERR: 79: Not an error 186/578 Test #79: vf-trans-1-stats ...................... Passed 0.71 sec test 103 Start 103: drr-b-stats 103: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;drr-b/out_0010.pfm" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 103: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 103: Test timeout computed to be: 1500 100: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 100: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a/out_0010.pfm 100: EXPECTED_ERRNO is 85: RETVAL: 0 85: STDOUT: MIN -558.201904 AVE 7.769665 MAX 558.680786 85: MAE 85.100204 MSE 18945.890625 85: DIF 54872 NUM 54872 85: 85: STDERR: 85: Not an error 187/578 Test #85: plm-compare-a ......................... Passed 0.59 sec test 106 Start 106: drr-c-stats 106: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;drr-c/out_0010.pfm" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 106: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 106: Test timeout computed to be: 1500 103: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 103: PARMS is stats;drr-b/out_0010.pfm 103: EXPECTED_ERRNO is 106: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 106: PARMS is stats;drr-c/out_0010.pfm 106: EXPECTED_ERRNO is 89: RETVAL: 0 89: STDOUT: Mask enabled. 512 / 54872 voxels inside mask 89: Min: 10.000 -10.000 0.000 89: Mean: 10.000 -10.000 0.000 89: Max: 10.000 -10.000 0.000 89: Mean abs: 10.000 10.000 0.000 89: Ave len: 14.142 89: Min (mask): 10.000 -10.000 0.000 89: Mean (mask): 10.000 -10.000 0.000 89: Max (mask): 10.000 -10.000 0.000 89: Mean abs (mask): 10.000 10.000 0.000 89: Ave len (mask): 14.142 89: 89: STDERR: 89: Not an error 188/578 Test #89: plm-compare-c ......................... Passed 0.43 sec test 109 Start 109: fdk-cpu-a-stats 109: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 109: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 109: Test timeout computed to be: 1500 87: RETVAL: 0 87: STDOUT: Min: 10.000 -10.000 0.000 87: Mean: 10.000 -10.000 0.000 87: Max: 10.000 -10.000 0.000 87: Mean abs: 10.000 10.000 0.000 87: Ave len: 14.142 87: 87: STDERR: 87: Not an error 189/578 Test #87: plm-compare-b ......................... Passed 0.67 sec test 112 Start 112: fdk-cpu-d-stats 112: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 112: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 112: Test timeout computed to be: 1500 109: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 109: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha 109: EXPECTED_ERRNO is 112: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 112: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha 112: EXPECTED_ERRNO is 92: RETVAL: 0 92: STDOUT: MIN -558.201904 AVE 7.769665 MAX 558.680786 NONZERO 54872 NUMVOX 54872 92: 92: STDERR: 92: Not an error 190/578 Test #92: plm-diff-a-stats ...................... Passed 0.49 sec test 115 Start 115: landmark-warp-a-stats-1 115: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-a-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 115: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 115: Test timeout computed to be: 1500 106: RETVAL: 0 106: STDOUT: Image center: 63.5 63.5 106: Projection matrix: -1.86502e-08 -0.213333 0 0 0 0 -0.213333 0 0.000666667 -5.82819e-11 0 0.666667 106: MIN 0.000000 AVE 0.000125 MAX 0.050494 NUM 16384 106: 106: STDERR: 106: Not an error 191/578 Test #106: drr-c-stats ........................... Passed 0.24 sec test 117 Start 117: landmark-warp-a-stats-2 117: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-a-stats-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 117: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 117: Test timeout computed to be: 1500 100: RETVAL: 0 100: STDOUT: Image center: 63.5 63.5 100: Projection matrix: -1.86502e-08 -0.213333 0 0 0 0 -0.213333 0 0.000666667 -5.82819e-11 0 0.666667 100: MIN 0.000000 AVE 0.000135 MAX 0.050109 NUM 16384 100: 100: STDERR: 100: Not an error 115: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 115: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha 115: EXPECTED_ERRNO is 192/578 Test #100: drr-a-stats ........................... Passed 0.30 sec test 120 Start 120: landmark-warp-b-stats-1 120: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-b-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 120: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 120: Test timeout computed to be: 1500 117: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 117: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha 117: EXPECTED_ERRNO is 120: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 120: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha 120: EXPECTED_ERRNO is 95: RETVAL: 0 95: STDOUT: Min: 10.000 -10.000 0.000 95: Mean: 10.000 -10.000 0.000 95: Max: 10.000 -10.000 0.000 95: Mean abs: 10.000 10.000 0.000 95: Ave len: 14.142 95: Jacobian: MINJAC 1 MAXJAC 1 95: Energy: MINDIL 0 MAXDIL 0 95: MAXSTRAIN 0 TOTSTRAIN 0 95: Second derivatives: MINSECDER 0 MAXSECDER 0 95: AVESECDER 0 INTSECDER 0 95: Max second derivative at: (1 1 1) 95: 95: STDERR: 95: Not an error 193/578 Test #95: plm-diff-b-stats ...................... Passed 0.59 sec test 122 Start 122: landmark-warp-b-stats-2 122: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-b-stats-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 122: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 122: Test timeout computed to be: 1500 122: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 122: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha 122: EXPECTED_ERRNO is 103: RETVAL: 0 103: STDOUT: Image center: 63.5 63.5 103: Projection matrix: -1.86502e-08 -0.213333 0 0 0 0 -0.213333 0 0.000666667 -5.82819e-11 0 0.666667 103: MIN 0.000000 AVE 0.000138 MAX 0.049634 NUM 16384 103: 103: STDERR: 103: Not an error 194/578 Test #103: drr-b-stats ........................... Passed 0.46 sec test 125 Start 125: landmark-warp-c-stats-1 125: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-c-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 125: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 125: Test timeout computed to be: 1500 125: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 125: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha 125: EXPECTED_ERRNO is 115: RETVAL: 0 115: STDOUT: MIN -1000.000000 AVE -991.799744 MAX 0.000000 NONZERO 54494 NUMVOX 54872 115: 115: STDERR: 115: Not an error 195/578 Test #115: landmark-warp-a-stats-1 ............... Passed 0.39 sec test 127 Start 127: landmark-warp-c-stats-2 127: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-c-stats-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 127: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 127: Test timeout computed to be: 1500 127: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 127: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha 127: EXPECTED_ERRNO is 109: RETVAL: 0 109: STDOUT: MIN -1000.000000 AVE -999.859619 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600 109: 109: STDERR: 109: Not an error 196/578 Test #109: fdk-cpu-a-stats ....................... Passed 0.60 sec test 131 Start 131: plm-add-a-stats 131: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 131: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 131: Test timeout computed to be: 1500 131: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 131: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd 131: EXPECTED_ERRNO is 117: RETVAL: 0 117: STDOUT: Min: -62.465 -4.112 -0.000 117: Mean: -22.960 0.011 0.000 117: Max: 16.278 4.199 0.000 117: Mean abs: 25.589 1.505 0.000 117: Ave len: 25.766 117: Jacobian: MINJAC 1.12686 MAXJAC 1.15895 117: Energy: MINDIL 0.128 MAXDIL 0.157995 117: MAXSTRAIN 0.171 TOTSTRAIN 7133.92 117: Second derivatives: MINSECDER 2.92e-10 MAXSECDER 0.000557 117: AVESECDER 7.93e-07 INTSECDER 99.2 117: Max second derivative at: (24 15 22) 117: 117: STDERR: 117: Not an error 197/578 Test #117: landmark-warp-a-stats-2 ............... Passed 0.55 sec test 134 Start 134: plm-add-b-stats 134: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 134: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 134: Test timeout computed to be: 1500 134: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 134: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd 134: EXPECTED_ERRNO is 112: RETVAL: 0 112: STDOUT: MIN -1000.000000 AVE -999.848633 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600 112: 112: STDERR: 112: Not an error 198/578 Test #112: fdk-cpu-d-stats ....................... Passed 0.76 sec test 137 Start 137: plm-add-vf-a-stats 137: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-vf-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 137: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 137: Test timeout computed to be: 1500 137: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 137: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd 137: EXPECTED_ERRNO is 127: RETVAL: 0 127: STDOUT: Min: -27.760 -0.518 -0.000 127: Mean: -1.562 0.019 0.000 127: Max: -0.000 1.063 0.000 127: Mean abs: 1.562 0.037 0.000 127: Ave len: 1.563 127: Jacobian: MINJAC 0.698803 MAXJAC 1.18578 127: Energy: MINDIL -0.302 MAXDIL 0.186636 127: MAXSTRAIN 0.205 TOTSTRAIN 143.999 127: Second derivatives: MINSECDER 2.31e-17 MAXSECDER 0.0141 127: AVESECDER 0.000315 INTSECDER 3.94e+04 127: Max second derivative at: (17 22 16) 127: 127: STDERR: 127: Not an error 199/578 Test #127: landmark-warp-c-stats-2 ............... Passed 0.36 sec test 140 Start 140: plm-add-vf-b-stats 140: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-vf-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 140: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 140: Test timeout computed to be: 1500 120: RETVAL: 0 120: STDOUT: MIN -1000.000122 AVE -992.005493 MAX 0.000000 NONZERO 54512 NUMVOX 54872 120: 120: STDERR: 120: Not an error 122: RETVAL: 0 122: STDOUT: Min: -30.672 -0.800 -0.000 122: Mean: -1.500 0.018 0.000 122: Max: 0.000 1.506 0.000 122: Mean abs: 1.500 0.042 0.000 122: Ave len: 1.502 122: Jacobian: MINJAC 0.647844 MAXJAC 1.23013 122: Energy: MINDIL -0.353 MAXDIL 0.231386 122: MAXSTRAIN 0.259 TOTSTRAIN 179.715 122: Second derivatives: MINSECDER 0 MAXSECDER 0.0443 122: AVESECDER 0.000472 INTSECDER 5.89e+04 122: Max second derivative at: (17 23 15) 122: 122: STDERR: 122: Not an error 200/578 Test #120: landmark-warp-b-stats-1 ............... Passed 0.72 sec test 143 Start 143: plm-adjust-a-stats 143: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 143: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 143: Test timeout computed to be: 1500 201/578 Test #122: landmark-warp-b-stats-2 ............... Passed 0.62 sec test 146 Start 146: plm-adjust-b-stats 146: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 146: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 146: Test timeout computed to be: 1500 125: RETVAL: 0 125: STDOUT: MIN -1000.000122 AVE -991.665894 MAX 0.000000 NONZERO 54484 NUMVOX 54872 125: 125: STDERR: 125: Not an error 202/578 Test #125: landmark-warp-c-stats-1 ............... Passed 0.59 sec test 149 Start 149: plm-adjust-c-stats 149: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 149: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 149: Test timeout computed to be: 1500 140: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 140: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd 140: EXPECTED_ERRNO is 143: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 143: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd 143: EXPECTED_ERRNO is 146: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 146: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd 146: EXPECTED_ERRNO is 149: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 149: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd 149: EXPECTED_ERRNO is 131: RETVAL: 0 131: STDOUT: MIN -1000.000000 AVE -1000.000000 MAX -1000.000000 NONZERO 54872 NUMVOX 54872 131: 131: STDERR: 131: Not an error 134: RETVAL: 0 134: STDOUT: MIN -500.000000 AVE -500.000000 MAX -500.000000 NONZERO 54872 NUMVOX 54872 134: 134: STDERR: 134: Not an error 203/578 Test #134: plm-add-b-stats ....................... Passed 0.47 sec test 152 Start 152: plm-adjust-d-stats 152: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 152: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 152: Test timeout computed to be: 1500 204/578 Test #131: plm-add-a-stats ....................... Passed 0.61 sec test 155 Start 155: plm-adjust-e-stats 155: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-e-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 155: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 155: Test timeout computed to be: 1500 152: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 152: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd 152: EXPECTED_ERRNO is 155: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 155: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd 155: EXPECTED_ERRNO is 140: RETVAL: 0 140: STDOUT: Min: 5.000 5.000 0.000 140: Mean: 5.000 5.000 0.000 140: Max: 5.000 5.000 0.000 140: Mean abs: 5.000 5.000 0.000 140: Ave len: 7.071 140: Jacobian: MINJAC 1 MAXJAC 1 140: Energy: MINDIL 0 MAXDIL 0 140: MAXSTRAIN 0 TOTSTRAIN 0 140: Second derivatives: MINSECDER 0 MAXSECDER 0 140: AVESECDER 0 INTSECDER 0 140: Max second derivative at: (1 1 1) 140: 140: STDERR: 140: Not an error 205/578 Test #140: plm-add-vf-b-stats .................... Passed 0.41 sec test 158 Start 158: plm-adjust-f-stats 158: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-f-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 158: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 158: Test timeout computed to be: 1500 158: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 158: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd 158: EXPECTED_ERRNO is 137: RETVAL: 0 137: STDOUT: Min: 20.000 0.000 0.000 137: Mean: 20.000 0.000 0.000 137: Max: 20.000 0.000 0.000 137: Mean abs: 20.000 0.000 0.000 137: Ave len: 20.000 137: Jacobian: MINJAC 1 MAXJAC 1 137: Energy: MINDIL 0 MAXDIL 0 137: MAXSTRAIN 0 TOTSTRAIN 0 137: Second derivatives: MINSECDER 0 MAXSECDER 0 137: AVESECDER 0 INTSECDER 0 137: Max second derivative at: (1 1 1) 137: 137: STDERR: 137: Not an error 206/578 Test #137: plm-add-vf-a-stats .................... Passed 0.61 sec test 161 Start 161: plm-adjust-g-stats 161: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-g-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 161: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 161: Test timeout computed to be: 1500 143: RETVAL: 0 143: STDOUT: MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872 143: 143: STDERR: 143: Not an error 207/578 Test #143: plm-adjust-a-stats .................... Passed 0.53 sec test 164 Start 164: plm-adjust-h-stats 164: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-h-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 164: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 164: Test timeout computed to be: 1500 161: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 161: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd 161: EXPECTED_ERRNO is 149: RETVAL: 0 149: STDOUT: MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872 149: 149: STDERR: 149: Not an error 164: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 164: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd 164: EXPECTED_ERRNO is 208/578 Test #149: plm-adjust-c-stats .................... Passed 0.55 sec test 167 Start 167: plm-adjust-i-stats 167: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-i-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 167: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 167: Test timeout computed to be: 1500 146: RETVAL: 0 146: STDOUT: MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872 146: 146: STDERR: 146: Not an error 209/578 Test #146: plm-adjust-b-stats .................... Passed 0.60 sec test 170 Start 170: plm-adjust-j-stats 170: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-j-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 170: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 170: Test timeout computed to be: 1500 167: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 167: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd 167: EXPECTED_ERRNO is 170: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 170: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd 170: EXPECTED_ERRNO is 556: RETVAL: 0 556: STDOUT: 556: [PLAN] 556: patient : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha 556: target : 556: dose_out : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha 556: debug : 0 556: dose norm : 70 556: 556: [SETTINGS] 556: flavor: a ** 556: homo_approx: n ** 556: ray_step: 1 ** 556: aperture_out: ** 556: proj_dose_out: ** 556: proj_img_out: ** 556: range_comp_out: ** 556: sigma_out: ** 556: wed_out: ** 556: beam_weight: 1 ** 556: 556: [GEOMETRY & APERTURE] 556: source: 0 -2000 0 ** 556: isocenter: 0 0 0 ** 556: vup: 0 0 1 ** 556: offset: 1500 ** 556: ap_center in pixels: 10 10 ** 556: i_res: 21 21 ** 556: spacing: 1 1 ** 556: source_size: 0 ** 556: ap_file_in: ** 556: rc_file_in: ** 556: smearing: 0 ** 556: 556: [PEAK] 556: E0: P0 556: spread: P0 556: weight: P0 556: 556: Start dose calculation Beam 1 556: Plan_calc::compute_beam_dose(beam) entry -- 556: Setting RVRTS = 1 556: FPD = 347.500001, BPD = 647.528776 556: 21 21 301 556: Setting RVRTS = 1 556: FPD = 347.500001, BPD = 647.528776 556: 21 21 301 556: Priority 4. Prescription depths detected. Any target depth will not be considered. 556: prescription min/max: 70 mm, 90 mm. 556: 556: 16 Mono-energetic BP used: 556: 111 110 109 108 107 106 105 104 103 102 101 100 99 98 97 96 556: Adding peak to sobp (111.000000, 1.000000, 0.892866) [0.010000, 111.000000] 556: Adding peak to sobp (110.000000, 1.000000, 0.199040) [0.010000, 111.000000] 556: Adding peak to sobp (109.000000, 1.000000, 0.226753) [0.010000, 111.000000] 556: Adding peak to sobp (108.000000, 1.000000, 0.173442) [0.010000, 111.000000] 556: Adding peak to sobp (107.000000, 1.000000, 0.151005) [0.010000, 111.000000] 556: Adding peak to sobp (106.000000, 1.000000, 0.133983) [0.010000, 111.000000] 556: Adding peak to sobp (105.000000, 1.000000, 0.120333) [0.010000, 111.000000] 556: Adding peak to sobp (104.000000, 1.000000, 0.111431) [0.010000, 111.000000] 556: Adding peak to sobp (103.000000, 1.000000, 0.102203) [0.010000, 111.000000] 556: Adding peak to sobp (102.000000, 1.000000, 0.095667) [0.010000, 111.000000] 556: Adding peak to sobp (101.000000, 1.000000, 0.089522) [0.010000, 111.000000] 556: Adding peak to sobp (100.000000, 1.000000, 0.084473) [0.010000, 111.000000] 556: Adding peak to sobp (99.000000, 1.000000, 0.079452) [0.010000, 111.000000] 556: Adding peak to sobp (98.000000, 1.000000, 0.078322) [0.010000, 111.000000] 556: Adding peak to sobp (97.000000, 1.000000, 0.063062) [0.010000, 111.000000] 556: Adding peak to sobp (96.000000, 1.000000, 0.099306) [0.010000, 111.000000] 556: **** (1) 556: Raw dose at the maximum (0, -30, 0) : 0.999508 A.U. 556: Dose normalized at the maximum to 1 x 70 Gy. 556: Primary PB num. x, y: 21, 21, primary PB res. x, y: 1 PB/mm, 1 PB/mm 556: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha 556: Sigma: 0.000000 seconds 556: Calc: 2.733370 seconds 556: IO: 0.131168 seconds 556: Reformat: 0.000000 seconds 556: Misc: 0.010425 seconds 556: done. 556: 556: Total execution time : 2.951236 seconds. 556: 556: STDERR: 556: Not an error 210/578 Test #556: proton-dose-1 ......................... Passed 3.40 sec test 173 Start 173: plm-boundary-a-stats 173: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 173: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 173: Test timeout computed to be: 1500 155: RETVAL: 0 155: STDOUT: MIN -1500.000000 AVE -1298.865601 MAX 987.531189 NONZERO 54872 NUMVOX 54872 155: 155: STDERR: 155: Not an error 211/578 Test #155: plm-adjust-e-stats .................... Passed 0.43 sec test 176 Start 176: plm-boundary-b-stats 176: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 176: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 176: Test timeout computed to be: 1500 173: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 173: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd 173: EXPECTED_ERRNO is 176: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 176: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd 176: EXPECTED_ERRNO is 97: RETVAL: 0 97: STDOUT: Fixed = /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 97: Moving = /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 97: 97: Reading the static/reference image 97: reading /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 97: 97: Reading the moving image 97: reading /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 97: volume_calc_grad complete. 97: kerx: 0.1629140526 0.2174074054 0.2393570840 0.2174074054 0.1629140526 97: kery: 0.1629140526 0.2174074054 0.2393570840 0.2174074054 0.1629140526 97: kerz: 0.1629140526 0.2174074054 0.2393570840 0.2174074054 0.1629140526 97: MSE [ 0] 18945.6 (1.000) [ 0.044 secs] 97: MSE [ 1] 18945.6 (1.000) [ 0.043 secs] 97: MSE [ 2] 18980.9 (0.995) [ 0.039 secs] 97: MSE [ 3] 18885.4 (0.970) [ 0.044 secs] 97: MSE [ 4] 18084.9 (0.966) [ 0.044 secs] 97: MSE [ 5] 17034.7 (0.966) [ 0.040 secs] 97: MSE [ 6] 15346.9 (0.946) [ 0.040 secs] 97: MSE [ 7] 14427.2 (0.940) [ 0.039 secs] 97: MSE [ 8] 13561.7 (0.935) [ 0.040 secs] 97: MSE [ 9] 12732.2 (0.928) [ 0.039 secs] 97: MSE [ 10] 12276.6 (0.923) [ 0.040 secs] 97: MSE [ 11] 11827.4 (0.920) [ 0.036 secs] 97: MSE [ 12] 11399.6 (0.920) [ 0.039 secs] 97: MSE [ 13] 11078.4 (0.919) [ 0.040 secs] 97: MSE [ 14] 10787.4 (0.918) [ 0.040 secs] 97: MSE [ 15] 10317.6 (0.915) [ 0.040 secs] 97: MSE [ 16] 9735.2 (0.913) [ 0.028 secs] 97: MSE [ 17] 9362.8 (0.911) [ 0.022 secs] 97: MSE [ 18] 8947.5 (0.909) [ 0.021 secs] 97: MSE [ 19] 8534.4 (0.899) [ 0.022 secs] 97: MSE [ 20] 7953.5 (0.895) [ 0.021 secs] 97: MSE [ 21] 7656.6 (0.893) [ 0.020 secs] 97: MSE [ 22] 7364.0 (0.892) [ 0.021 secs] 97: MSE [ 23] 7174.2 (0.892) [ 0.021 secs] 97: MSE [ 24] 6956.3 (0.891) [ 0.021 secs] 97: MSE [ 25] 6512.1 (0.890) [ 0.021 secs] 97: MSE [ 26] 6079.0 (0.890) [ 0.021 secs] 97: MSE [ 27] 5716.1 (0.889) [ 0.021 secs] 97: MSE [ 28] 5454.8 (0.889) [ 0.021 secs] 97: MSE [ 29] 5201.5 (0.889) [ 0.021 secs] 97: MSE [ 30] 5013.3 (0.888) [ 0.020 secs] 97: MSE [ 31] 4840.3 (0.888) [ 0.022 secs] 97: MSE [ 32] 4652.0 (0.887) [ 0.022 secs] 97: MSE [ 33] 4400.6 (0.886) [ 0.021 secs] 97: MSE [ 34] 4085.1 (0.883) [ 0.021 secs] 97: MSE [ 35] 3778.0 (0.882) [ 0.021 secs] 97: MSE [ 36] 3521.6 (0.882) [ 0.021 secs] 97: MSE [ 37] 3308.2 (0.882) [ 0.021 secs] 97: MSE [ 38] 3126.2 (0.881) [ 0.021 secs] 97: MSE [ 39] 2988.9 (0.881) [ 0.023 secs] 97: MSE [ 40] 2836.4 (0.880) [ 0.021 secs] 97: MSE [ 41] 2736.6 (0.881) [ 0.021 secs] 97: MSE [ 42] 2623.3 (0.880) [ 0.023 secs] 97: MSE [ 43] 2426.1 (0.880) [ 0.022 secs] 97: MSE [ 44] 2271.4 (0.879) [ 0.020 secs] 97: MSE [ 45] 2112.0 (0.880) [ 0.023 secs] 97: MSE [ 46] 1926.2 (0.879) [ 0.022 secs] 97: MSE [ 47] 1775.3 (0.880) [ 0.020 secs] 97: MSE [ 48] 1621.0 (0.878) [ 0.024 secs] 97: MSE [ 49] 1504.3 (0.878) [ 0.029 secs] 97: Time for 50 iterations = 1.389740 (0.027795 sec / it) 97: Min: 1.248 -5.701 -5.701 97: Mean: 3.443 0.016 0.016 97: Max: 7.379 5.617 5.617 97: Mean abs: 3.443 1.874 1.874 97: Ave len: 4.646 97: Direction cosines: vin = 1.000000 0.000000 0.000000 ... 97: vf = 1.000000 0.000000 0.000000 ... 97: spac: vin = 1.315789 1.315789 1.315789 ... 97: vf = 1.315789 1.315789 1.315789 ... 97: proj: vin = 0.760000 -0.000000 0.000000 ... 97: vf = 0.760000 -0.000000 0.000000 ... 97: step: vin = 1.315789 0.000000 0.000000 ... 97: vf = 1.315789 0.000000 0.000000 ... 97: 97: STDERR: 97: Not an error 212/578 Test #97: demons-a .............................. Passed 1.85 sec test 179 Start 179: plm-boundary-c-stats 179: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 179: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 179: Test timeout computed to be: 1500 152: RETVAL: 0 152: STDOUT: MIN -800.000000 AVE -782.961060 MAX -600.000000 NONZERO 54872 NUMVOX 54872 152: 152: STDERR: 152: Not an error 213/578 Test #152: plm-adjust-d-stats .................... Passed 0.53 sec test 182 Start 182: plm-boundary-d-stats 182: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 182: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 182: Test timeout computed to be: 1500 179: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 179: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd 179: EXPECTED_ERRNO is 182: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 182: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd 182: EXPECTED_ERRNO is 158: RETVAL: 0 158: STDOUT: MIN -0.107574 AVE -0.019504 MAX 0.207060 NONZERO 54872 NUMVOX 54872 158: 158: STDERR: 158: Not an error 214/578 Test #158: plm-adjust-f-stats .................... Passed 0.54 sec test 185 Start 185: plm-boundary-e-stats 185: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-e-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 185: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 185: Test timeout computed to be: 1500 161: RETVAL: 0 161: STDOUT: MIN -0.025301 AVE -0.000000 MAX 0.287606 NONZERO 54872 NUMVOX 54872 161: 161: STDERR: 161: Not an error 215/578 Test #161: plm-adjust-g-stats .................... Passed 0.47 sec test 188 Start 188: plm-convert-dicom-a-stats 188: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 188: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 188: Test timeout computed to be: 1500 185: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 185: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd 185: EXPECTED_ERRNO is 188: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 188: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha 188: EXPECTED_ERRNO is 170: RETVAL: 0 170: STDOUT: MIN -1000.000000 AVE -921.627502 MAX -4.987521 NONZERO 54872 NUMVOX 54872 170: 170: STDERR: 170: Not an error 216/578 Test #170: plm-adjust-j-stats .................... Passed 0.49 sec test 191 Start 191: plm-convert-dicom-b-stats 191: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/dicom_info" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom/image0000.dcm" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 191: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 191: Test timeout computed to be: 1500 164: RETVAL: 0 164: STDOUT: MIN -0.283680 AVE -0.248078 MAX 0.156631 NONZERO 54872 NUMVOX 54872 164: 164: STDERR: 164: Not an error 217/578 Test #164: plm-adjust-h-stats .................... Passed 0.58 sec test 194 Start 194: plm-convert-dicom-c-stats 194: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Tumor.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 194: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 194: Test timeout computed to be: 1500 179: RETVAL: 0 179: STDOUT: MIN 0.000000 AVE 0.105000 MAX 1.000000 NONZERO 840 NUMVOX 8000 179: 179: STDERR: 179: Not an error 167: RETVAL: 0 167: STDOUT: MIN -1000.000000 AVE -921.594055 MAX -4.987521 NONZERO 54872 NUMVOX 54872 167: 167: STDERR: 167: Not an error 218/578 Test #167: plm-adjust-i-stats .................... Passed 0.54 sec test 200 Start 200: plm-convert-dicom-donut-a-stats 200: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 200: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 200: Test timeout computed to be: 1500 219/578 Test #179: plm-boundary-c-stats .................. Passed 0.38 sec test 203 Start 203: plm-convert-dicom-donut-b-stats 203: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 203: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 203: Test timeout computed to be: 1500 191: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/dicom_info 191: PARMS is --input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom/image0000.dcm 191: EXPECTED_ERRNO is 194: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 194: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Tumor.mha 194: EXPECTED_ERRNO is 200: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 200: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd 200: EXPECTED_ERRNO is 203: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 203: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd 203: EXPECTED_ERRNO is 176: RETVAL: 0 176: STDOUT: MIN 0.000000 AVE 0.132000 MAX 1.000000 NONZERO 1056 NUMVOX 8000 176: 176: STDERR: 176: Not an error 220/578 Test #176: plm-boundary-b-stats .................. Passed 0.59 sec test 207 Start 207: plm-convert-cxt-stats 207: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-cxt-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 207: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 207: Test timeout computed to be: 1500 173: RETVAL: 0 173: STDOUT: MIN 0.000000 AVE 0.132000 MAX 1.000000 NONZERO 1056 NUMVOX 8000 173: 173: STDERR: 173: Not an error 182: RETVAL: 0 182: STDOUT: MIN 0.000000 AVE 2.614500 MAX 56.000000 NONZERO 1056 NUMVOX 8000 182: 182: STDERR: 182: Not an error 221/578 Test #173: plm-boundary-a-stats .................. Passed 0.62 sec test 209 Start 209: plm-convert-prefix-fcsv 209: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-prefix-fcsv" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--input-ss-list;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7-list.txt;--output-prefix-fcsv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv;--simplify-perc;0.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 209: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 209: Test timeout computed to be: 1500 222/578 Test #182: plm-boundary-d-stats .................. Passed 0.54 sec test 211 Start 211: plm-convert-dose-scale-stats 211: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dose-scale-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 211: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 211: Test timeout computed to be: 1500 188: RETVAL: 0 188: STDOUT: SS_IMAGE: At most 16 structures 188: S 0 NVOX 1648003 188: S 1 NVOX 0 188: S 2 NVOX 0 188: S 3 NVOX 0 188: S 4 NVOX 0 188: S 5 NVOX 0 188: S 6 NVOX 0 188: S 7 NVOX 0 188: S 8 NVOX 0 188: S 9 NVOX 0 188: S 10 NVOX 0 188: S 11 NVOX 0 188: S 12 NVOX 0 188: S 13 NVOX 0 188: S 14 NVOX 0 188: S 15 NVOX 0 188: 188: STDERR: 188: Not an error 207: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 207: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha 207: EXPECTED_ERRNO is 223/578 Test #188: plm-convert-dicom-a-stats ............. Passed 0.40 sec test 214 Start 214: plm-crop-a-stats 214: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-crop-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 214: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 214: Test timeout computed to be: 1500 209: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 209: PARMS is convert;--input-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--input-ss-list;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7-list.txt;--output-prefix-fcsv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv;--simplify-perc;0.5 209: EXPECTED_ERRNO is 211: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 211: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha 211: EXPECTED_ERRNO is 185: RETVAL: 0 185: STDOUT: MIN 0.000000 AVE 2.142000 MAX 56.000000 NONZERO 840 NUMVOX 8000 185: 185: STDERR: 185: Not an error 214: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 214: PARMS is header;plm-crop-a.mha 214: EXPECTED_ERRNO is 224/578 Test #185: plm-boundary-e-stats .................. Passed 0.49 sec test 217 Start 217: plm-crop-b-stats 217: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-crop-b.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 217: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 217: Test timeout computed to be: 1500 191: RETVAL: 0 191: STDOUT: Reading input file: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom/image0000.dcm 191: Specific Character Set = ISO_IR 100 191: Image Type = DERIVED\SECONDARY\AXIAL 191: Instance Creation Date = 20230502 191: Instance Creation Time = 231057 191: SOP Class UID = 1.2.840.10008.5.1.4.1.1.2 191: SOP Instance UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.3544421.1683112263.893293 191: Study Date = 20230502 191: Series Date = 191: Study Time = 231057 191: Series Time = 191: Accession Number = 191: Modality = CT 191: Manufacturer = Plastimatch 191: Referring Physician's Name = 191: Station Name = 191: Study Description = 191: Series Description = 191: Operators' Name = 191: Manufacturer's Model Name = Plastimatch 191: Patient's Name = ANONYMOUS 191: Patient ID = PL616837151897465 191: Patient's Birth Date = 191: Patient's Sex = O 191: Slice Thickness = 13.157895 191: KVP = 191: Device Serial Number = 191: Software Version(s) = 1.9.4 191: Patient Position = FFS 191: Study Instance UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.3544421.1683112263.893273 191: Series Instance UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.3544421.1683112263.893290 191: Study ID = 191: Series Number = 191: Acquisition Number = 191: Instance Number = 0 191: Image Position (Patient) = -243.421051\-243.421051\-243.421051 191: Image Orientation (Patient) = 1.000000\0.000000\0.000000\0.000000\1.000000\0.000000 191: Frame of Reference UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.3544421.1683112263.893274 191: Position Reference Indicator = SP 191: Slice Location = -243.421051 191: Samples per Pixel = 1 191: Photometric Interpretation = MONOCHROME2 191: Rows = 38 191: Columns = 38 191: Pixel Spacing = 13.157895\13.157895 191: Bits Allocated = 16 191: Bits Stored = 16 191: High Bit = 15 191: Pixel Representation = 1 191: Window Center = 40 191: Window Width = 400 191: Rescale Intercept = -1000.000000 191: Rescale Slope = 1.000000 191: Rescale Type = HU 191: 191: STDERR: 191: Not an error 225/578 Test #191: plm-convert-dicom-b-stats ............. Passed 0.37 sec test 220 Start 220: plm-crop-c-stats 220: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-crop-c.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 220: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 220: Test timeout computed to be: 1500 217: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 217: PARMS is header;plm-crop-b.mha 217: EXPECTED_ERRNO is 194: RETVAL: 0 194: STDOUT: MIN 0.000000 AVE 0.000280 MAX 1.000000 NONZERO 280 NUMVOX 1000000 194: 194: STDERR: 194: Not an error 226/578 Test #194: plm-convert-dicom-c-stats ............. Passed 0.38 sec test 222 Start 222: plm-dice-a 222: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 222: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 222: Test timeout computed to be: 1500 220: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 220: PARMS is header;plm-crop-c.mha 220: EXPECTED_ERRNO is 222: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 222: PARMS is dice;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha 222: EXPECTED_ERRNO is 200: RETVAL: 0 200: STDOUT: SS_IMAGE: At most 16 structures 200: S 0 NVOX 2623 200: S 1 NVOX 0 200: S 2 NVOX 0 200: S 3 NVOX 0 200: S 4 NVOX 0 200: S 5 NVOX 0 200: S 6 NVOX 0 200: S 7 NVOX 0 200: S 8 NVOX 0 200: S 9 NVOX 0 200: S 10 NVOX 0 200: S 11 NVOX 0 200: S 12 NVOX 0 200: S 13 NVOX 0 200: S 14 NVOX 0 200: S 15 NVOX 0 200: 200: STDERR: 200: Not an error 227/578 Test #200: plm-convert-dicom-donut-a-stats ....... Passed 0.47 sec test 224 Start 224: plm-dice-b 224: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 224: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 224: Test timeout computed to be: 1500 203: RETVAL: 0 203: STDOUT: SS_IMAGE: At most 16 structures 203: S 0 NVOX 1924 203: S 1 NVOX 0 203: S 2 NVOX 0 203: S 3 NVOX 0 203: S 4 NVOX 0 203: S 5 NVOX 0 203: S 6 NVOX 0 203: S 7 NVOX 0 203: S 8 NVOX 0 203: S 9 NVOX 0 203: S 10 NVOX 0 203: S 11 NVOX 0 203: S 12 NVOX 0 203: S 13 NVOX 0 203: S 14 NVOX 0 203: S 15 NVOX 0 203: 203: STDERR: 203: Not an error 228/578 Test #203: plm-convert-dicom-donut-b-stats ....... Passed 0.47 sec test 226 Start 226: plm-dice-c 226: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;--hausdorff;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 226: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 226: Test timeout computed to be: 1500 224: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 224: PARMS is dice;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha 224: EXPECTED_ERRNO is 226: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 226: PARMS is dice;--hausdorff;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha 226: EXPECTED_ERRNO is 559: RETVAL: 0 559: STDOUT: 559: [PLAN] 559: patient : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha 559: target : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha 559: dose_out : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha 559: debug : 0 559: dose norm : 100 559: 559: [SETTINGS] 559: flavor: a ** 559: homo_approx: n ** 559: ray_step: 1 ** 559: aperture_out: ** 559: proj_dose_out: ** 559: proj_img_out: ** 559: range_comp_out: ** 559: sigma_out: ** 559: wed_out: ** 559: beam_weight: 1 ** 559: 559: [GEOMETRY & APERTURE] 559: source: 0 -2000 0 ** 559: isocenter: 0 0 0 ** 559: vup: 0 0 1 ** 559: offset: 1500 ** 559: ap_center in pixels: 20 20 ** 559: i_res: 41 41 ** 559: spacing: 3.75 3.75 ** 559: source_size: 0 ** 559: ap_file_in: ** 559: rc_file_in: ** 559: smearing: 5 ** 559: 559: [PEAK] 559: E0: P0 559: spread: P0 559: weight: P0 559: 559: Start dose calculation Beam 1 559: Plan_calc::compute_beam_dose(beam) entry -- 559: Setting RVRTS = 1 559: FPD = 347.500001, BPD = 649.116731 559: 41 41 302 559: Setting RVRTS = 1 559: FPD = 347.500001, BPD = 649.116731 559: 41 41 302 559: Setting RVRTS = 1 559: FPD = 347.500001, BPD = 649.116731 559: 41 41 302 559: Priority 5. Target detected. 559: Computing beam modifiers for passive target 559: Compute target wepl_min_max... 559: Apply lateral smearing to the target... 559: Smearing = 5.000000, Smearing_ap = 3.750000 559: Strel size = (1,1), (3,3) 559: 0 1 0 559: 1 1 1 559: 0 1 0 559: Apply proximal and distal ... 559: Compute max wed... 559: Compute the aperture... 559: Compute range compensator... 559: Max wed in the target is 117.554 mm. 559: Min wed in the target is 88.5526 mm. 559: ires = 41 41 559: proj_vol dim = 41 41 302 559: prescription min/max: 88.5526 mm, 117.554 mm. 559: 559: 22 Mono-energetic BP used: 559: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 559: Adding peak to sobp (130.000000, 1.000000, 0.895612) [0.010000, 140.000000] 559: Adding peak to sobp (129.000000, 1.000000, 0.143334) [0.010000, 140.000000] 559: Adding peak to sobp (128.000000, 1.000000, 0.216499) [0.010000, 140.000000] 559: Adding peak to sobp (127.000000, 1.000000, 0.160917) [0.010000, 140.000000] 559: Adding peak to sobp (126.000000, 1.000000, 0.140926) [0.010000, 140.000000] 559: Adding peak to sobp (125.000000, 1.000000, 0.124814) [0.010000, 140.000000] 559: Adding peak to sobp (124.000000, 1.000000, 0.113261) [0.010000, 140.000000] 559: Adding peak to sobp (123.000000, 1.000000, 0.102876) [0.010000, 140.000000] 559: Adding peak to sobp (122.000000, 1.000000, 0.096644) [0.010000, 140.000000] 559: Adding peak to sobp (121.000000, 1.000000, 0.089393) [0.010000, 140.000000] 559: Adding peak to sobp (120.000000, 1.000000, 0.083935) [0.010000, 140.000000] 559: Adding peak to sobp (119.000000, 1.000000, 0.078956) [0.010000, 140.000000] 559: Adding peak to sobp (118.000000, 1.000000, 0.074957) [0.010000, 140.000000] 559: Adding peak to sobp (117.000000, 1.000000, 0.071067) [0.010000, 140.000000] 559: Adding peak to sobp (116.000000, 1.000000, 0.067803) [0.010000, 140.000000] 559: Adding peak to sobp (115.000000, 1.000000, 0.064859) [0.010000, 140.000000] 559: Adding peak to sobp (114.000000, 1.000000, 0.062045) [0.010000, 140.000000] 559: Adding peak to sobp (113.000000, 1.000000, 0.059730) [0.010000, 140.000000] 559: Adding peak to sobp (112.000000, 1.000000, 0.057228) [0.010000, 140.000000] 559: Adding peak to sobp (111.000000, 1.000000, 0.056709) [0.010000, 140.000000] 559: Adding peak to sobp (110.000000, 1.000000, 0.045556) [0.010000, 140.000000] 559: Adding peak to sobp (109.000000, 1.000000, 0.079095) [0.010000, 140.000000] 559: **** (1) 559: Raw dose at the maximum (15, 15, 10) : 1.016 A.U. 559: Dose normalized at the maximum to 1 x 100%. 559: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm 559: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha 559: Sigma: 0.000000 seconds 559: Calc: 3.648324 seconds 559: IO: 0.089478 seconds 559: Reformat: 0.000000 seconds 559: Misc: 0.029104 seconds 559: done. 559: 559: Total execution time : 3.859140 seconds. 559: 559: STDERR: 559: Not an error 229/578 Test #559: proton-dose-4a ........................ Passed 4.35 sec test 232 Start 232: plm-dice-d 232: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;--hausdorff;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 232: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 232: Test timeout computed to be: 1500 232: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 232: PARMS is dice;--hausdorff;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha 232: EXPECTED_ERRNO is 207: RETVAL: 0 207: STDOUT: SS_IMAGE: At most 16 structures 207: S 0 NVOX 1648003 207: S 1 NVOX 0 207: S 2 NVOX 0 207: S 3 NVOX 0 207: S 4 NVOX 0 207: S 5 NVOX 0 207: S 6 NVOX 0 207: S 7 NVOX 0 207: S 8 NVOX 0 207: S 9 NVOX 0 207: S 10 NVOX 0 207: S 11 NVOX 0 207: S 12 NVOX 0 207: S 13 NVOX 0 207: S 14 NVOX 0 207: S 15 NVOX 0 207: 207: STDERR: 207: Not an error 230/578 Test #207: plm-convert-cxt-stats ................. Passed 0.44 sec test 238 Start 238: plm-dice-e 238: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-e" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;--all;--zcrop;0 0;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 238: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 238: Test timeout computed to be: 1500 238: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 238: PARMS is dice;--all;--zcrop;0 0;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd 238: EXPECTED_ERRNO is 217: RETVAL: 0 217: STDOUT: Type = float 217: Planes = 1 217: Origin = -14.4737 3.9474 -11.8421 217: Size = 19 11 4 217: Spacing = 1.3158 1.3158 1.3158 217: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 217: 217: STDERR: 217: Not an error 231/578 Test #217: plm-crop-b-stats ...................... Passed 0.48 sec test 241 Start 241: plm-dice-f 241: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-f" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;--all;--zcrop;10 10;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 241: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 241: Test timeout computed to be: 1500 222: RETVAL: 0 222: STDOUT: CENTER_OF_MASS 222: ref 4.18425e-05 7.62939e-06 7.62939e-06 222: cmp 19.7369 7.62939e-06 7.62939e-06 222: TP: 384 222: TN: 54296 222: FN: 128 222: FP: 64 222: DICE: 0.800000 222: SE: 0.750000 222: SP: 0.998823 222: 222: STDERR: 222: Not an error 433: RETVAL: 0 433: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 433: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 433: Launching registration worker thread 433: Inside registration worker thread 433: Doing registration stage 433: [1] xf_in->m_type = 0, xf_out->m_type = 0 433: RESAMPLE 1 1: (1 1 1), (1 1 1) 433: RESAMPLE 1 1: (1 1 1), (1 1 1) 433: volume_calc_grad complete. 433: Computing grid search extent. 433: Dimension 0, mo=0.8 F=(-25, 50) M=(-25, 50) 433: Dimension 1, mo=0.8 F=(-25, 50) M=(-25, 50) 433: Dimension 2, mo=0.8 F=(-25, 50) M=(-25, 50) 433: Native grid search extent: (-10, 10), (-10, 10), (-10, 10) 433: [0 0 0] -0.366001 * 433: Global grid search 433: [-10 -10 -10] -0.0657023 433: [-6 -10 -10] -0.0463935 433: [-2 -10 -10] -0.0578569 433: [2 -10 -10] -0.104587 433: [6 -10 -10] -0.134745 433: [10 -10 -10] -0.132346 433: [-10 -6 -10] -0.0447641 433: [-6 -6 -10] -0.0444838 433: [-2 -6 -10] -0.0804107 433: [2 -6 -10] -0.157649 433: [6 -6 -10] -0.217923 433: [10 -6 -10] -0.228427 433: [-10 -2 -10] -0.0363824 433: [-6 -2 -10] -0.0510381 433: [-2 -2 -10] -0.105651 433: [2 -2 -10] -0.207715 433: [6 -2 -10] -0.301396 433: [10 -2 -10] -0.331995 433: [-10 2 -10] -0.0360564 433: [-6 2 -10] -0.0510835 433: [-2 2 -10] -0.105603 433: [2 2 -10] -0.207349 433: [6 2 -10] -0.301597 433: [10 2 -10] -0.333546 433: [-10 6 -10] -0.043624 433: [-6 6 -10] -0.0435673 433: [-2 6 -10] -0.0792328 433: [2 6 -10] -0.15537 433: [6 6 -10] -0.21609 433: [10 6 -10] -0.229483 433: [-10 10 -10] -0.0625422 433: [-6 10 -10] -0.044456 433: [-2 10 -10] -0.0566679 433: [2 10 -10] -0.102753 433: [6 10 -10] -0.133354 433: [10 10 -10] -0.133022 433: [-10 -10 -6] -0.0447641 433: [-6 -10 -6] -0.0444838 433: [-2 -10 -6] -0.0804107 433: [2 -10 -6] -0.157649 433: [6 -10 -6] -0.217923 433: [10 -10 -6] -0.228427 433: [-10 -6 -6] -0.0419245 433: [-6 -6 -6] -0.0616512 433: [-2 -6 -6] -0.125976 433: [2 -6 -6] -0.24928 433: [6 -6 -6] -0.370675 * 433: [10 -6 -6] -0.41107 * 433: [-10 -2 -6] -0.0458151 433: [-6 -2 -6] -0.0813895 433: [-2 -2 -6] -0.168343 433: [2 -2 -6] -0.331623 433: [6 -2 -6] -0.520659 * 433: [10 -2 -6] -0.60981 * 433: [-10 2 -6] -0.0460451 433: [-6 2 -6] -0.0818015 433: [-2 2 -6] -0.168558 433: [2 2 -6] -0.330972 433: [6 2 -6] -0.519715 433: [10 2 -6] -0.610965 * 433: [-10 6 -6] -0.0416946 433: [-6 6 -6] -0.0613956 433: [-2 6 -6] -0.125047 433: [2 6 -6] -0.246207 433: [6 6 -6] -0.366747 433: [10 6 -6] -0.41144 433: [-10 10 -6] -0.043562 433: [-6 10 -6] -0.0440007 433: [-2 10 -6] -0.0795809 433: [2 10 -6] -0.155169 433: [6 10 -6] -0.215936 433: [10 10 -6] -0.22921 433: [-10 -10 -2] -0.0363824 433: [-6 -10 -2] -0.0510381 433: [-2 -10 -2] -0.105651 433: [2 -10 -2] -0.207715 433: [6 -10 -2] -0.301396 433: [10 -10 -2] -0.331995 433: [-10 -6 -2] -0.0458151 433: [-6 -6 -2] -0.0813895 433: [-2 -6 -2] -0.168343 433: [2 -6 -2] -0.331623 433: [6 -6 -2] -0.520659 433: [10 -6 -2] -0.60981 433: [-10 -2 -2] -0.0623074 433: [-6 -2 -2] -0.114225 433: [-2 -2 -2] -0.227442 433: [2 -2 -2] -0.450611 433: [6 -2 -2] -0.79525 * 433: [10 -2 -2] -1.06281 * 433: [-10 2 -2] -0.0628058 433: [-6 2 -2] -0.114854 433: [-2 2 -2] -0.227853 433: [2 2 -2] -0.45011 433: [6 2 -2] -0.79301 433: [10 2 -2] -1.06302 * 433: [-10 6 -2] -0.0464919 433: [-6 6 -2] -0.0817851 433: [-2 6 -2] -0.167859 433: [2 6 -2] -0.328807 433: [6 6 -2] -0.516135 433: [10 6 -2] -0.60998 433: [-10 10 -2] -0.036042 433: [-6 10 -2] -0.0508055 433: [-2 10 -2] -0.104874 433: [2 10 -2] -0.205278 433: [6 10 -2] -0.299375 433: [10 10 -2] -0.332915 433: [-10 -10 2] -0.0360564 433: [-6 -10 2] -0.0510835 433: [-2 -10 2] -0.105603 433: [2 -10 2] -0.207349 433: [6 -10 2] -0.301597 433: [10 -10 2] -0.333546 433: [-10 -6 2] -0.0460451 433: [-6 -6 2] -0.0818015 433: [-2 -6 2] -0.168558 433: [2 -6 2] -0.330972 433: [6 -6 2] -0.519715 433: [10 -6 2] -0.610965 433: [-10 -2 2] -0.0628058 433: [-6 -2 2] -0.114854 433: [-2 -2 2] -0.227853 433: [2 -2 2] -0.45011 433: [6 -2 2] -0.79301 433: [10 -2 2] -1.06302 433: [-10 2 2] -0.0634055 433: [-6 2 2] -0.115563 433: [-2 2 2] -0.228352 433: [2 2 2] -0.449777 433: [6 2 2] -0.791187 433: [10 2 2] -1.06397 * 433: [-10 6 2] -0.0467633 433: [-6 6 2] -0.0822511 433: [-2 6 2] -0.168209 433: [2 6 2] -0.328525 433: [6 6 2] -0.515825 433: [10 6 2] -0.611858 433: [-10 10 2] -0.0358199 433: [-6 10 2] -0.0509452 433: [-2 10 2] -0.104965 433: [2 10 2] -0.205182 433: [6 10 2] -0.299823 433: [10 10 2] -0.334637 433: [-10 -10 6] -0.043624 433: [-6 -10 6] -0.0435673 433: [-2 -10 6] -0.0792328 433: [2 -10 6] -0.15537 433: [6 -10 6] -0.21609 433: [10 -10 6] -0.229483 433: [-10 -6 6] -0.0416946 433: [-6 -6 6] -0.0613956 433: [-2 -6 6] -0.125047 433: [2 -6 6] -0.246207 433: [6 -6 6] -0.366747 433: [10 -6 6] -0.41144 433: [-10 -2 6] -0.0464919 433: [-6 -2 6] -0.0817851 433: [-2 -2 6] -0.167859 433: [2 -2 6] -0.328807 433: [6 -2 6] -0.516135 433: [10 -2 6] -0.60998 433: [-10 2 6] -0.0467633 433: [-6 2 6] -0.0822511 433: [-2 2 6] -0.168209 433: [2 2 6] -0.328525 433: [6 2 6] -0.515825 433: [10 2 6] -0.611858 433: [-10 6 6] -0.0420716 433: [-6 6 6] -0.0616282 433: [-2 6 6] -0.124622 433: [2 6 6] -0.244167 433: [6 6 6] -0.364463 433: [10 6 6] -0.413552 433: [-10 10 6] -0.042919 433: [-6 10 6] -0.0432268 433: [-2 10 6] -0.078484 433: [2 10 6] -0.153286 433: [6 10 6] -0.214701 433: [10 10 6] -0.230766 433: [-10 -10 10] -0.0625422 433: [-6 -10 10] -0.044456 433: [-2 -10 10] -0.0566679 433: [2 -10 10] -0.102753 433: [6 -10 10] -0.133354 433: [10 -10 10] -0.133022 433: [-10 -6 10] -0.043562 433: [-6 -6 10] -0.0440007 433: [-2 -6 10] -0.0795809 433: [2 -6 10] -0.155169 433: [6 -6 10] -0.215936 433: [10 -6 10] -0.22921 433: [-10 -2 10] -0.036042 433: [-6 -2 10] -0.0508055 433: [-2 -2 10] -0.104874 433: [2 -2 10] -0.205278 433: [6 -2 10] -0.299375 433: [10 -2 10] -0.332915 433: [-10 2 10] -0.0358199 433: [-6 2 10] -0.0509452 433: [-2 2 10] -0.104965 433: [2 2 10] -0.205182 433: [6 2 10] -0.299823 433: [10 2 10] -0.334637 433: [-10 6 10] -0.042919 433: [-6 6 10] -0.0432268 433: [-2 6 10] -0.078484 433: [2 6 10] -0.153286 433: [6 6 10] -0.214701 433: [10 6 10] -0.230766 433: [-10 10 10] -0.0609081 433: [-6 10 10] -0.0434493 433: [-2 10 10] -0.0559197 433: [2 10 10] -0.101407 433: [6 10 10] -0.132652 433: [10 10 10] -0.134325 433: [2] xf_out->m_type = 1, xf_in->m_type = 0 433: Doing registration stage 433: [1] xf_in->m_type = 1, xf_out->m_type = 0 433: RESAMPLE 1 1: (1 1 1), (1 1 1) 433: RESAMPLE 1 1: (1 1 1), (1 1 1) 433: volume_calc_grad complete. 433: Computing grid search extent. 433: Dimension 0, mo=0.8 F=(-25, 50) M=(-25, 50) 433: Dimension 1, mo=0.8 F=(-25, 50) M=(-25, 50) 433: Dimension 2, mo=0.8 F=(-25, 50) M=(-25, 50) 433: Native grid search extent: (-10, 10), (-10, 10), (-10, 10) 433: [10 2 2] -1.06397 * 433: Local grid search 433: [6.4 -1.6 -1.6] -0.883407 433: [8.8 -1.6 -1.6] -1.12376 * 433: [11.2 -1.6 -1.6] -1.12967 * 433: [13.6 -1.6 -1.6] -0.914496 433: [6.4 0.8 -1.6] -0.913773 433: [8.8 0.8 -1.6] -1.19876 * 433: [11.2 0.8 -1.6] -1.20812 * 433: [13.6 0.8 -1.6] -0.955547 433: [6.4 3.2 -1.6] -0.766583 433: [8.8 3.2 -1.6] -0.916579 433: [11.2 3.2 -1.6] -0.920988 433: [13.6 3.2 -1.6] -0.784372 433: [6.4 5.6 -1.6] -0.576245 433: [8.8 5.6 -1.6] -0.655686 433: [11.2 5.6 -1.6] -0.653953 433: [13.6 5.6 -1.6] -0.574785 433: [6.4 -1.6 0.8] -0.913773 433: [8.8 -1.6 0.8] -1.19876 433: [11.2 -1.6 0.8] -1.20812 433: [13.6 -1.6 0.8] -0.955547 433: [6.4 0.8 0.8] -0.948114 433: [8.8 0.8 0.8] -1.30327 * 433: [11.2 0.8 0.8] -1.3196 * 433: [13.6 0.8 0.8] -1.00372 433: [6.4 3.2 0.8] -0.788348 433: [8.8 3.2 0.8] -0.951558 433: [11.2 3.2 0.8] -0.958168 433: [13.6 3.2 0.8] -0.812303 433: [6.4 5.6 0.8] -0.588765 433: [8.8 5.6 0.8] -0.673812 433: [11.2 5.6 0.8] -0.67344 433: [13.6 5.6 0.8] -0.591068 433: [6.4 -1.6 3.2] -0.766583 433: [8.8 -1.6 3.2] -0.916579 433: [11.2 -1.6 3.2] -0.920988 433: [13.6 -1.6 3.2] -0.784372 433: [6.4 0.8 3.2] -0.788348 433: [8.8 0.8 3.2] -0.951558 433: [11.2 0.8 3.2] -0.958168 433: [13.6 0.8 3.2] -0.812303 433: [6.4 3.2 3.2] -0.677918 433: [8.8 3.2 3.2] -0.791729 433: [11.2 3.2 3.2] -0.794915 433: [13.6 3.2 3.2] -0.688998 433: [6.4 5.6 3.2] -0.520489 433: [8.8 5.6 3.2] -0.585515 433: [11.2 5.6 3.2] -0.583462 433: [13.6 5.6 3.2] -0.515484 433: [6.4 -1.6 5.6] -0.576245 433: [8.8 -1.6 5.6] -0.655686 433: [11.2 -1.6 5.6] -0.653953 433: [13.6 -1.6 5.6] -0.574785 433: [6.4 0.8 5.6] -0.588765 433: [8.8 0.8 5.6] -0.673812 433: [11.2 0.8 5.6] -0.67344 433: [13.6 0.8 5.6] -0.591068 433: [6.4 3.2 5.6] -0.520489 433: [8.8 3.2 5.6] -0.585515 433: [11.2 3.2 5.6] -0.583462 433: [13.6 3.2 5.6] -0.515484 433: [6.4 5.6 5.6] -0.412801 433: [8.8 5.6 5.6] -0.455339 433: [11.2 5.6 5.6] -0.451028 433: [13.6 5.6 5.6] -0.399458 433: [2] xf_out->m_type = 1, xf_in->m_type = 1 433: ** Registration worker thread finished. 433: Warping... 433: plm_warp_itk: xform_to_itk_vf 433: plm_warp_itk: convert_to_itk 433: plm_warp_itk: warping... 433: Saving image... 433: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.mha 433: Load: 0.208318 433: Run: 6.46675 433: Save: 0.0302131 433: Total: 6.70528 433: Finished! 433: 433: STDERR: 433: Not an error 232/578 Test #433: plm-reg-trans-mi-a .................... Passed 7.53 sec test 245 Start 245: plm-dmap-b 245: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dmap-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dmap;--algorithm;danielsson;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha;--absolute-distance" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 245: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 245: Test timeout computed to be: 1500 233/578 Test #222: plm-dice-a ............................ Passed 0.44 sec test 247 Start 247: plm-dvh-a 247: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dvh-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dvh;--input-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--input-dose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-csv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 247: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 247: Test timeout computed to be: 1500 245: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 245: PARMS is dmap;--algorithm;danielsson;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha;--absolute-distance 245: EXPECTED_ERRNO is 220: RETVAL: 0 220: STDOUT: Type = float 220: Planes = 1 220: Origin = -9.2105 -9.2105 -9.2105 220: Size = 15 15 15 220: Spacing = 1.3158 1.3158 1.3158 220: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 220: 220: STDERR: 220: Not an error 241: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 241: PARMS is dice;--all;--zcrop;10 10;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd 241: EXPECTED_ERRNO is 211: RETVAL: 0 211: STDOUT: MIN 0.000000 AVE 0.294533 MAX 77.699997 NONZERO 208 NUMVOX 54872 211: 211: STDERR: 211: Not an error 234/578 Test #220: plm-crop-c-stats ...................... Passed 0.50 sec test 250 Start 250: plm-dvh-b 250: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dvh-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dvh;--input-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--input-ss-list;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss-list.txt;--input-dose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-csv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 250: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 250: Test timeout computed to be: 1500 235/578 Test #211: plm-convert-dose-scale-stats .......... Passed 0.65 sec test 253 Start 253: plm-dvh-c 253: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dvh-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dvh;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--output-csv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-c.csv" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 253: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 253: Test timeout computed to be: 1500 250: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 250: PARMS is dvh;--input-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--input-ss-list;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss-list.txt;--input-dose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-csv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv 250: EXPECTED_ERRNO is 247: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 247: PARMS is dvh;--input-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--input-dose;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-csv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv 247: EXPECTED_ERRNO is 214: RETVAL: 0 214: STDOUT: Type = float 214: Planes = 1 214: Origin = -18.4211 -21.0526 -15.7895 214: Size = 11 16 3 214: Spacing = 1.3158 1.3158 1.3158 214: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 214: 214: STDERR: 214: Not an error 224: RETVAL: 0 224: STDOUT: Time = 0.005502 seconds 224: Time = 0.004340 seconds 224: CENTER_OF_MASS 224: ref 8.39233e-05 8.47711e-06 8.47711e-06 224: cmp 8.39233e-05 8.47711e-06 8.47711e-06 224: TP: 729 224: TN: 103094 224: FN: 0 224: FP: 0 224: DICE: 1.000000 224: SE: 1.000000 224: SP: 1.000000 224: 224: STDERR: 224: Not an error 236/578 Test #214: plm-crop-a-stats ...................... Passed 0.67 sec test 257 Start 257: plm-fill-a-stats 257: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-fill-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 257: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 257: Test timeout computed to be: 1500 253: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 253: PARMS is dvh;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--output-csv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-c.csv 253: EXPECTED_ERRNO is 237/578 Test #224: plm-dice-b ............................ Passed 0.44 sec test 260 Start 260: plm-mask-a-stats 260: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-mask-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 260: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 260: Test timeout computed to be: 1500 226: RETVAL: 0 226: STDOUT: Hausdorff distance = 26.315790 226: Avg average Hausdorff distance = 3.406955 226: Max average Hausdorff distance = 4.934211 226: Percent (0.95) Hausdorff distance = 19.736843 226: Hausdorff distance (boundary) = 26.315790 226: Avg average Hausdorff distance (boundary) = 7.115030 226: Max average Hausdorff distance (boundary) = 8.534851 226: Percent (0.95) Hausdorff distance (boundary) = 26.315790 226: 226: STDERR: 226: Not an error 238/578 Test #226: plm-dice-c ............................ Passed 0.43 sec test 263 Start 263: plm-gamma-a-stats 263: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 263: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 263: Test timeout computed to be: 1500 257: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 257: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha 257: EXPECTED_ERRNO is 260: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 260: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha 260: EXPECTED_ERRNO is 263: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 263: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha 263: EXPECTED_ERRNO is 232: RETVAL: 0 232: STDOUT: Hausdorff distance = 45.580288 232: Avg average Hausdorff distance = 7.072703 232: Max average Hausdorff distance = 12.121115 232: Percent (0.95) Hausdorff distance = 22.694012 232: Hausdorff distance (boundary) = 45.580288 232: Avg average Hausdorff distance (boundary) = 14.894061 232: Max average Hausdorff distance (boundary) = 18.384613 232: Percent (0.95) Hausdorff distance (boundary) = 32.894737 232: 232: STDERR: 232: Not an error 239/578 Test #232: plm-dice-d ............................ Passed 0.52 sec test 266 Start 266: plm-gamma-b-stats 266: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 266: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 266: Test timeout computed to be: 1500 266: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 266: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha 266: EXPECTED_ERRNO is 238: RETVAL: 0 238: STDOUT: CENTER_OF_MASS 238: ref 0 0 7.5 238: cmp 0 0 5 238: TP: 22120 238: TN: 6300 238: FN: 1580 238: FP: 0 238: DICE: 0.965517 238: SE: 0.933333 238: SP: 1.000000 238: Hausdorff distance = 4.000000 238: Avg average Hausdorff distance = 0.067568 238: Max average Hausdorff distance = 0.135135 238: Percent (0.95) Hausdorff distance = 0.500000 238: Hausdorff distance (boundary) = 4.000000 238: Avg average Hausdorff distance (boundary) = 0.244043 238: Max average Hausdorff distance (boundary) = 0.334483 238: Percent (0.95) Hausdorff distance (boundary) = 2.500000 238: 238: STDERR: 238: Not an error 240/578 Test #238: plm-dice-e ............................ Passed 0.63 sec test 268 Start 268: plm-gamma-c 268: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=gamma;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 268: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 268: Test timeout computed to be: 1500 247: RETVAL: 0 247: STDOUT: Creating Histogram... 247: Your Histogram will have 256 bins and will be 0.500000 Gy large 247: checking voxel size... 247: 13.1579 13.1579 13.1579 247: 13.1579 13.1579 13.1579 247: Dose and ss-img have the same size. Resample not necessary. 247: 247: STDERR: 247: Not an error 268: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 268: PARMS is gamma;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha 268: EXPECTED_ERRNO is 241/578 Test #247: plm-dvh-a ............................. Passed 0.50 sec test 270 Start 270: plm-gamma-d 270: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=gamma;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.mha;--ref-only-threshold;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 270: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 270: Test timeout computed to be: 1500 250: RETVAL: 0 250: STDOUT: Trying to load ss_list: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss-list.txt 250: Creating Histogram... 250: Your Histogram will have 256 bins and will be 0.500000 Gy large 250: checking voxel size... 250: 13.1579 13.1579 13.1579 250: 13.1579 13.1579 13.1579 250: Dose and ss-img have the same size. Resample not necessary. 250: 250: STDERR: 250: Not an error 242/578 Test #250: plm-dvh-b ............................. Passed 0.48 sec test 273 Start 273: plm-maximum-a-stats 273: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-maximum-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 273: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 273: Test timeout computed to be: 1500 209: RETVAL: 0 209: STDOUT: Trying to load ss_list: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7-list.txt 209: Setting PIH from M_SS_IMG 209: PIH is: 209: Origin = -243.4211 -243.4211 -243.4211 209: Size = 38 38 38 209: Spacing = 13.1579 13.1579 13.1579 209: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 209: Rt_study_warp: Convert ss_img to cxt. 209: Doing extraction 209: Rt_study_warp: Apply dicom_dir. 209: Rt_study_warp: Set geometry from PIH. 209: Rt_study_warp: Set rasterization geometry. 209: rast_dim = 512 512 7 209: rast_offset = -55.2632 -55.2632 -46.0526 209: rast_spacing = 0.215872 0.215872 13.1579 209: Rt_study_warp: warp and save ss. 209: Warp_and_save_ss: save_ss_img 209: save_ss_img: save_prefix_fcsv 209: save_ss_img: save_prefix_fcsv (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv) 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/sphere-7.fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (1).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (2).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (3).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (4).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (5).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (6).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (7).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (8).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (9).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (10).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (11).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (12).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (13).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (14).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (15).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (16).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (17).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (18).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (19).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (20).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (21).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (22).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (23).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (24).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (25).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (26).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (27).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (28).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (29).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (30).fcsv 209: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/Unknown structure (31).fcsv 209: Finished! 209: 209: STDERR: 209: Not an error 270: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 270: PARMS is gamma;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.mha;--ref-only-threshold;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha 270: EXPECTED_ERRNO is 273: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 273: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd 273: EXPECTED_ERRNO is 243/578 Test #209: plm-convert-prefix-fcsv ............... Passed 1.19 sec test 276 Start 276: plm-multiply-a-stats 276: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 276: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 276: Test timeout computed to be: 1500 245: RETVAL: 0 245: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha 245: 245: STDERR: 245: Not an error 244/578 Test #245: plm-dmap-b ............................ Passed 0.63 sec test 279 Start 279: plm-multiply-vf-a-stats 279: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-vf-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 279: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 279: Test timeout computed to be: 1500 276: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 276: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd 276: EXPECTED_ERRNO is 241: RETVAL: 0 241: STDOUT: CENTER_OF_MASS 241: ref 0 0 7.5 241: cmp 0 0 7.5 241: TP: 17380 241: TN: 4620 241: FN: 0 241: FP: 0 241: DICE: 1.000000 241: SE: 1.000000 241: SP: 1.000000 241: Hausdorff distance = 0.000000 241: Avg average Hausdorff distance = 0.000000 241: Max average Hausdorff distance = 0.000000 241: Percent (0.95) Hausdorff distance = 0.000000 241: Hausdorff distance (boundary) = 0.000000 241: Avg average Hausdorff distance (boundary) = 0.000000 241: Max average Hausdorff distance (boundary) = 0.000000 241: Percent (0.95) Hausdorff distance (boundary) = 0.000000 241: 241: STDERR: 241: Not an error 266: RETVAL: 0 266: STDOUT: MIN 0.000000 AVE 0.250000 MAX 2.000000 NONZERO 1000 NUMVOX 8000 266: 266: STDERR: 266: Not an error 245/578 Test #266: plm-gamma-b-stats ..................... Passed 0.38 sec test 283 Start 283: plm-reg-align-center-stats 283: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-align-center-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 283: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 283: Test timeout computed to be: 1500 279: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 279: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd 279: EXPECTED_ERRNO is 246/578 Test #241: plm-dice-f ............................ Passed 0.71 sec test 286 Start 286: plm-reg-itk-translation-stats 286: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-translation-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 286: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 286: Test timeout computed to be: 1500 260: RETVAL: 0 260: STDOUT: MIN -1000.000000 AVE -1000.000000 MAX -1000.000000 NONZERO 54872 NUMVOX 54872 260: 260: STDERR: 260: Not an error 247/578 Test #260: plm-mask-a-stats ...................... Passed 0.59 sec test 289 Start 289: plm-reg-itk-rigid-a-stats-1 289: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-rigid-a-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-intermediate-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 289: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 289: Test timeout computed to be: 1500 283: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 283: PARMS is compare;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-img.mha 283: EXPECTED_ERRNO is 286: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 286: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-img.mha 286: EXPECTED_ERRNO is 263: RETVAL: 0 263: STDOUT: MIN 0.000000 AVE 0.023500 MAX 0.666667 NONZERO 400 NUMVOX 8000 263: 263: STDERR: 263: Not an error 289: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 289: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-intermediate-img.mha 289: EXPECTED_ERRNO is 248/578 Test #263: plm-gamma-a-stats ..................... Passed 0.63 sec test 291 Start 291: plm-reg-itk-rigid-a-stats-2 291: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-rigid-a-stats-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 291: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 291: Test timeout computed to be: 1500 257: RETVAL: 0 257: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872 257: 257: STDERR: 257: Not an error 249/578 Test #257: plm-fill-a-stats ...................... Passed 0.70 sec test 294 Start 294: plm-reg-itk-similarity-stats-1 294: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-similarity-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-intermediate-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 294: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 294: Test timeout computed to be: 1500 291: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 291: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-img.mha 291: EXPECTED_ERRNO is 294: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 294: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-intermediate-img.mha 294: EXPECTED_ERRNO is 253: RETVAL: 0 253: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542141.1683112258.256388RTDOSE 253: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542141.1683112258.256389RTSTRUCT 253: Found DCM_ReferencedFrameOfReferenceSequence! 253: Found DCM_RTReferencedStudySequence! 253: Trying to load rt dose. 253: Load: DoseGridScaling = 0.000000 253: RTDOSE: dim = 38 38 38 253: ipp = -243.421005 -243.421005 -243.421005 253: spc = 13.157900 13.157900 13.157900 253: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 253: Bits_alloc: 32 253: Bits_stored: 32 253: High_bit: 31 253: Pixel_rep: 0 253: rc = 1, length = 109744, npix = 54872 253: Trying to load rt structure set. 253: Adding structure (1), Foreground 253: Structure 1 has color 255\0\0 253: Rasterizing... 253: Converting... 253: Finished rasterization. 253: Time = 0.053827 seconds 253: Creating Histogram... 253: Your Histogram will have 256 bins and will be 0.500000 Gy large 253: checking voxel size... 253: 0.215872 0.215872 13.1579 253: 0.215872 0.215872 13.1579 253: Dose and ss-img have the same size. Resample not necessary. 253: 253: STDERR: 253: Not an error 250/578 Test #253: plm-dvh-c ............................. Passed 0.83 sec test 296 Start 296: plm-reg-itk-similarity-stats-2 296: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-similarity-stats-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 296: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 296: Test timeout computed to be: 1500 565: RETVAL: 0 565: STDOUT: 565: [PLAN] 565: patient : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha 565: target : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha 565: dose_out : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.mha 565: debug : 0 565: dose norm : 100 565: 565: [SETTINGS] 565: flavor: a ** 565: homo_approx: n ** 565: ray_step: 1 ** 565: aperture_out: ** 565: proj_dose_out: ** 565: proj_img_out: ** 565: range_comp_out: ** 565: sigma_out: ** 565: wed_out: ** 565: beam_weight: 1 ** 565: 565: [GEOMETRY & APERTURE] 565: source: 0 -2000 0 ** 565: isocenter: 0 0 0 ** 565: vup: 0 0 1 ** 565: offset: 1500 ** 565: ap_center in pixels: 20 20 ** 565: i_res: 41 41 ** 565: spacing: 3.75 3.75 ** 565: source_size: 0 ** 565: ap_file_in: ** 565: rc_file_in: ** 565: smearing: 5 ** 565: 565: [PEAK] 565: E0: P0 565: spread: P0 565: weight: P0 565: 565: Start dose calculation Beam 1 565: Plan_calc::compute_beam_dose(beam) entry -- 565: Setting RVRTS = 1 565: FPD = 347.500001, BPD = 649.116731 565: 41 41 302 565: Setting RVRTS = 1 565: FPD = 347.500001, BPD = 649.116731 565: 41 41 302 565: Setting RVRTS = 1 565: FPD = 347.500001, BPD = 649.116731 565: 41 41 302 565: Priority 5. Target detected. 565: Compute target wepl_min_max... 565: Apply lateral smearing to the target... 565: Smearing = 5.000000, Smearing_ap = 3.750000 565: Strel size = (1,1), (3,3) 565: 0 1 0 565: 1 1 1 565: 0 1 0 565: Apply proximal and distal ... 565: Compute max wed... 565: Compute the aperture... 565: Max wed in the target is 117.554 mm. 565: Min wed in the target is 88.5523 mm. 565: Min and max depths in the PTV (target + margins): 88.5523 mm and 117.554 mm. 565: Min and max energies for treating the PTV: 109 MeV and 130 MeV. 565: 565: 22 Mono-energetic BP used: 565: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 565: Optimization of the particle number map for any mono-energetic slice in progress... 565: Adding peak to sobp (130.000000, 1.000000, 1.000000) [0.010000, 140.000000] 565: Adding peak to sobp (129.000000, 1.000000, 1.000000) [0.010000, 140.000000] 565: Adding peak to sobp (128.000000, 1.000000, 1.000000) [0.010000, 140.000000] 565: Adding peak to sobp (127.000000, 1.000000, 1.000000) [0.010000, 140.000000] 565: Adding peak to sobp (126.000000, 1.000000, 1.000000) [0.010000, 140.000000] 565: Adding peak to sobp (125.000000, 1.000000, 1.000000) [0.010000, 140.000000] 565: Adding peak to sobp (124.000000, 1.000000, 1.000000) [0.010000, 140.000000] 565: Adding peak to sobp (123.000000, 1.000000, 1.000000) [0.010000, 140.000000] 565: Adding peak to sobp (122.000000, 1.000000, 1.000000) [0.010000, 140.000000] 565: Adding peak to sobp (121.000000, 1.000000, 1.000000) [0.010000, 140.000000] 565: Adding peak to sobp (120.000000, 1.000000, 1.000000) [0.010000, 140.000000] 565: Adding peak to sobp (119.000000, 1.000000, 1.000000) [0.010000, 140.000000] 565: Adding peak to sobp (118.000000, 1.000000, 1.000000) [0.010000, 140.000000] 565: Adding peak to sobp (117.000000, 1.000000, 1.000000) [0.010000, 140.000000] 565: Adding peak to sobp (116.000000, 1.000000, 1.000000) [0.010000, 140.000000] 565: Adding peak to sobp (115.000000, 1.000000, 1.000000) [0.010000, 140.000000] 565: Adding peak to sobp (114.000000, 1.000000, 1.000000) [0.010000, 140.000000] 565: Adding peak to sobp (113.000000, 1.000000, 1.000000) [0.010000, 140.000000] 565: Adding peak to sobp (112.000000, 1.000000, 1.000000) [0.010000, 140.000000] 565: Adding peak to sobp (111.000000, 1.000000, 1.000000) [0.010000, 140.000000] 565: Adding peak to sobp (110.000000, 1.000000, 1.000000) [0.010000, 140.000000] 565: Adding peak to sobp (109.000000, 1.000000, 1.000000) [0.010000, 140.000000] 565: Raw dose at the maximum (-15, 15, -10) : 1.01597 A.U. 565: Dose normalized at the maximum to 1 x 100%. 565: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm 565: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.mha 565: Sigma: 0.000000 seconds 565: Calc: 4.678075 seconds 565: IO: 0.148506 seconds 565: Reformat: 0.000000 seconds 565: Misc: 0.043993 seconds 565: done. 565: 565: Total execution time : 4.930599 seconds. 565: 565: STDERR: 565: Not an error 251/578 Test #565: proton-dose-5a ........................ Passed 5.47 sec test 299 Start 299: plm-reg-itk-bspline-stats-1 299: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-bspline-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 299: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 299: Test timeout computed to be: 1500 296: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 296: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-img.mha 296: EXPECTED_ERRNO is 299: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 299: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-img.mha 299: EXPECTED_ERRNO is 268: RETVAL: 0 268: STDOUT: Gamma dose max is 70.000000 268: Time = 0.007669 seconds 268: Gamma calculation is under progress... 268: analysis threshold = 7.00 Gy 268: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.mha 268: Pass rate = 90.719998 % 268: 268: STDERR: 268: Not an error 252/578 Test #268: plm-gamma-c ........................... Passed 0.60 sec test 303 Start 303: plm-reg-itk-demons-stats-2 303: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-stats-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 303: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 303: Test timeout computed to be: 1500 279: RETVAL: 0 279: STDOUT: Min: 100.000 100.000 100.000 279: Mean: 100.000 100.000 100.000 279: Max: 100.000 100.000 100.000 279: Mean abs: 100.000 100.000 100.000 279: Ave len: 173.205 279: Jacobian: MINJAC 1 MAXJAC 1 279: Energy: MINDIL 0 MAXDIL 0 279: MAXSTRAIN 0 TOTSTRAIN 0 279: Second derivatives: MINSECDER 0 MAXSECDER 0 279: AVESECDER 0 INTSECDER 0 279: Max second derivative at: (1 1 1) 279: 279: STDERR: 279: Not an error 253/578 Test #279: plm-multiply-vf-a-stats ............... Passed 0.44 sec test 305 Start 305: plm-reg-itk-demons-diff 305: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-diff" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 305: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 305: Test timeout computed to be: 1500 276: RETVAL: 0 276: STDOUT: MIN -0.000000 AVE 0.000000 MAX -0.000000 NONZERO 0 NUMVOX 54872 276: 276: STDERR: 276: Not an error 254/578 Test #276: plm-multiply-a-stats .................. Passed 0.51 sec test 307 Start 307: plm-reg-itk-demons-logd 307: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-logd" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 307: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 307: Test timeout computed to be: 1500 273: RETVAL: 0 273: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872 273: 273: STDERR: 273: Not an error 255/578 Test #273: plm-maximum-a-stats ................... Passed 0.58 sec test 309 Start 309: plm-reg-itk-demons-sym-logd 309: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-sym-logd" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 309: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 309: Test timeout computed to be: 1500 303: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 303: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-img.mha 303: EXPECTED_ERRNO is 305: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 305: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.txt 305: EXPECTED_ERRNO is 270: RETVAL: 0 270: STDOUT: Gamma dose max is 70.000000 270: Time = 0.008566 seconds 270: Gamma calculation is under progress... 270: analysis threshold = 7.00 Gy 270: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.mha 270: Pass rate = 89.999998 % 270: 270: STDERR: 270: Not an error 307: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 307: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.txt 307: EXPECTED_ERRNO is 256/578 Test #270: plm-gamma-d ........................... Passed 0.65 sec test 312 Start 312: plm-bsp-mse-c-stats 312: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 312: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 312: Test timeout computed to be: 1500 309: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 309: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.txt 309: EXPECTED_ERRNO is 312: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 312: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-img.mha 312: EXPECTED_ERRNO is 283: RETVAL: 0 283: STDOUT: MIN -0.000061 AVE 0.000001 MAX 0.000061 283: MAE 0.000002 MSE 0.000000 283: DIF 2274 NUM 54872 283: 283: STDERR: 283: Not an error 257/578 Test #283: plm-reg-align-center-stats ............ Passed 0.57 sec test 315 Start 315: plm-bsp-mse-g-stats 315: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-g-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 315: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 315: Test timeout computed to be: 1500 291: RETVAL: 0 291: STDOUT: MIN -1000.000000 AVE -939.203979 MAX 0.000000 NONZERO 51690 NUMVOX 54872 291: 291: STDERR: 291: Not an error 258/578 Test #291: plm-reg-itk-rigid-a-stats-2 ........... Passed 0.48 sec test 318 Start 318: plm-bsp-mse-h-stats 318: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-h-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 318: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 318: Test timeout computed to be: 1500 315: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 315: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-img.mha 315: EXPECTED_ERRNO is 318: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 318: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-img.mha 318: EXPECTED_ERRNO is 286: RETVAL: 0 286: STDOUT: MIN -999.914246 AVE -677.557922 MAX 0.000000 NONZERO 43320 NUMVOX 54872 286: 286: STDERR: 286: Not an error 259/578 Test #286: plm-reg-itk-translation-stats ......... Passed 0.65 sec test 321 Start 321: plm-bsp-mse-i-stats 321: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-i-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 321: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 321: Test timeout computed to be: 1500 289: RETVAL: 0 289: STDOUT: MIN -1000.000000 AVE -939.203979 MAX 0.000000 NONZERO 51690 NUMVOX 54872 289: 289: STDERR: 289: Not an error 260/578 Test #289: plm-reg-itk-rigid-a-stats-1 ........... Passed 0.66 sec test 324 Start 324: plm-bsp-mse-k-stats 324: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-k-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 324: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 324: Test timeout computed to be: 1500 299: RETVAL: 0 299: STDOUT: MIN -999.992249 AVE -763.817810 MAX 0.000000 NONZERO 48346 NUMVOX 54872 299: 299: STDERR: 299: Not an error 321: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 321: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-img.mha 321: EXPECTED_ERRNO is 261/578 Test #299: plm-reg-itk-bspline-stats-1 ........... Passed 0.47 sec test 327 Start 327: plm-bsp-mse-l-stats 327: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-l-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 327: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 327: Test timeout computed to be: 1500 324: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 324: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-img.mha 324: EXPECTED_ERRNO is 294: RETVAL: 0 294: STDOUT: MIN -1000.000000 AVE -981.187012 MAX 0.000000 NONZERO 54152 NUMVOX 54872 294: 294: STDERR: 294: Not an error 262/578 Test #294: plm-reg-itk-similarity-stats-1 ........ Passed 0.62 sec test 329 Start 329: plm-bsp-mse-o 329: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-o" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 329: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 329: Test timeout computed to be: 1500 327: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 327: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-img.mha 327: EXPECTED_ERRNO is 571: RETVAL: 0 571: STDOUT: 571: [PLAN] 571: patient : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha 571: target : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-2.mha 571: dose_out : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha 571: debug : 0 571: dose norm : 100 571: 571: [SETTINGS] 571: flavor: a ** 571: homo_approx: n ** 571: ray_step: 1 ** 571: aperture_out: ** 571: proj_dose_out: ** 571: proj_img_out: ** 571: range_comp_out: ** 571: sigma_out: ** 571: wed_out: ** 571: beam_weight: 1 ** 571: 571: [GEOMETRY & APERTURE] 571: source: 0 -2000 0 ** 571: isocenter: 0 0 0 ** 571: vup: 0 0 1 ** 571: offset: 1500 ** 571: ap_center in pixels: 20 20 ** 571: i_res: 41 41 ** 571: spacing: 3.75 3.75 ** 571: source_size: 0 ** 571: ap_file_in: ** 571: rc_file_in: ** 571: smearing: 5 ** 571: 571: [PEAK] 571: E0: P0 571: spread: P0 571: weight: P0 571: 571: Start dose calculation Beam 1 571: Plan_calc::compute_beam_dose(beam) entry -- 571: Setting RVRTS = 1 571: FPD = 347.500001, BPD = 649.116731 571: 41 41 302 571: Setting RVRTS = 1 571: FPD = 347.500001, BPD = 649.116731 571: 41 41 302 571: Setting RVRTS = 1 571: FPD = 347.500001, BPD = 649.116731 571: 41 41 302 571: Priority 5. Target detected. 571: Compute target wepl_min_max... 571: Apply lateral smearing to the target... 571: Smearing = 5.000000, Smearing_ap = 3.750000 571: Strel size = (1,1), (3,3) 571: 0 1 0 571: 1 1 1 571: 0 1 0 571: Apply proximal and distal ... 571: Compute max wed... 571: Compute the aperture... 571: Max wed in the target is 117.554 mm. 571: Min wed in the target is 88.5523 mm. 571: Min and max depths in the PTV (target + margins): 88.5523 mm and 117.554 mm. 571: Min and max energies for treating the PTV: 109 MeV and 130 MeV. 571: 571: 22 Mono-energetic BP used: 571: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 571: Optimization of the particle number map for any mono-energetic slice in progress... 571: Adding peak to sobp (130.000000, 1.000000, 1.000000) [0.010000, 140.000000] 571: Adding peak to sobp (129.000000, 1.000000, 1.000000) [0.010000, 140.000000] 571: Adding peak to sobp (128.000000, 1.000000, 1.000000) [0.010000, 140.000000] 571: Adding peak to sobp (127.000000, 1.000000, 1.000000) [0.010000, 140.000000] 571: Adding peak to sobp (126.000000, 1.000000, 1.000000) [0.010000, 140.000000] 571: Adding peak to sobp (125.000000, 1.000000, 1.000000) [0.010000, 140.000000] 571: Adding peak to sobp (124.000000, 1.000000, 1.000000) [0.010000, 140.000000] 571: Adding peak to sobp (123.000000, 1.000000, 1.000000) [0.010000, 140.000000] 571: Adding peak to sobp (122.000000, 1.000000, 1.000000) [0.010000, 140.000000] 571: Adding peak to sobp (121.000000, 1.000000, 1.000000) [0.010000, 140.000000] 571: Adding peak to sobp (120.000000, 1.000000, 1.000000) [0.010000, 140.000000] 571: Adding peak to sobp (119.000000, 1.000000, 1.000000) [0.010000, 140.000000] 571: Adding peak to sobp (118.000000, 1.000000, 1.000000) [0.010000, 140.000000] 571: Adding peak to sobp (117.000000, 1.000000, 1.000000) [0.010000, 140.000000] 571: Adding peak to sobp (116.000000, 1.000000, 1.000000) [0.010000, 140.000000] 571: Adding peak to sobp (115.000000, 1.000000, 1.000000) [0.010000, 140.000000] 571: Adding peak to sobp (114.000000, 1.000000, 1.000000) [0.010000, 140.000000] 571: Adding peak to sobp (113.000000, 1.000000, 1.000000) [0.010000, 140.000000] 571: Adding peak to sobp (112.000000, 1.000000, 1.000000) [0.010000, 140.000000] 571: Adding peak to sobp (111.000000, 1.000000, 1.000000) [0.010000, 140.000000] 571: Adding peak to sobp (110.000000, 1.000000, 1.000000) [0.010000, 140.000000] 571: Adding peak to sobp (109.000000, 1.000000, 1.000000) [0.010000, 140.000000] 571: Raw dose at the maximum (-15, 15, -10) : 1.01597 A.U. 571: Dose normalized at the maximum to 1 x 100%. 571: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm 571: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha 571: Sigma: 0.000000 seconds 571: Calc: 5.188952 seconds 571: IO: 0.070795 seconds 571: Reformat: 0.000000 seconds 571: Misc: 0.015082 seconds 571: done. 571: 571: Total execution time : 5.330631 seconds. 571: 571: STDERR: 571: Not an error 263/578 Test #571: proton-dose-6a ........................ Passed 5.80 sec test 331 Start 331: plm-bsp-mse-p 331: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-p" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 331: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 331: Test timeout computed to be: 1500 329: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 329: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o.txt 329: EXPECTED_ERRNO is 296: RETVAL: 0 296: STDOUT: MIN -1000.000000 AVE -940.684265 MAX 0.000000 NONZERO 52716 NUMVOX 54872 296: 296: STDERR: 296: Not an error 264/578 Test #296: plm-reg-itk-similarity-stats-2 ........ Passed 0.58 sec test 333 Start 333: plm-bsp-mse-q 333: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-q" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 333: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 333: Test timeout computed to be: 1500 331: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 331: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p.txt 331: EXPECTED_ERRNO is 333: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 333: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q.txt 333: EXPECTED_ERRNO is 315: RETVAL: 0 315: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 315: 315: STDERR: 315: Not an error 265/578 Test #315: plm-bsp-mse-g-stats ................... Passed 0.42 sec test 335 Start 335: plm-bsp-mse-r 335: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-r" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 335: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 335: Test timeout computed to be: 1500 335: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 335: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r.txt 335: EXPECTED_ERRNO is 318: RETVAL: 0 318: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 318: 318: STDERR: 318: Not an error 303: RETVAL: 0 303: STDOUT: MIN -999.914856 AVE -754.915161 MAX 0.000000 NONZERO 47950 NUMVOX 54872 303: 303: STDERR: 266/578 Test #318: plm-bsp-mse-h-stats ................... Passed 0.46 sec test 338 Start 338: plm-bsp-mi-c-stats 338: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 338: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 338: Test timeout computed to be: 1500 303: Not an error 267/578 Test #303: plm-reg-itk-demons-stats-2 ............ Passed 0.66 sec test 341 Start 341: plm-bsp-mi-c-2-stats 341: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-c-2-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 341: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 341: Test timeout computed to be: 1500 338: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 338: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-img.mha 338: EXPECTED_ERRNO is 312: RETVAL: 0 312: STDOUT: MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 312: 312: STDERR: 312: Not an error 268/578 Test #312: plm-bsp-mse-c-stats ................... Passed 0.62 sec test 344 Start 344: plm-bsp-mi-k-stats 344: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-k-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 344: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 344: Test timeout computed to be: 1500 341: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 341: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-img.mha 341: EXPECTED_ERRNO is 321: RETVAL: 0 321: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 321: 321: STDERR: 321: Not an error 327: RETVAL: 0 327: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 327: 327: STDERR: 269/578 Test #321: plm-bsp-mse-i-stats ................... Passed 0.47 sec test 347 Start 347: plm-bsp-gm-k-stats 347: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-gm-k-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 347: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 347: Test timeout computed to be: 1500 327: Not an error 270/578 Test #327: plm-bsp-mse-l-stats ................... Passed 0.42 sec test 349 Start 349: plm-bsp-sm-multi-a 349: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-sm-multi-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 349: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 349: Test timeout computed to be: 1500 347: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 347: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-img.mha 347: EXPECTED_ERRNO is 349: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 349: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a.txt 349: EXPECTED_ERRNO is 344: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 344: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-img.mha 344: EXPECTED_ERRNO is 329: RETVAL: 0 329: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 329: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 329: Launching registration worker thread 329: Inside registration worker thread 329: Doing registration stage 329: [1] xf_in->m_type = 0, xf_out->m_type = 0 329: RESAMPLE 1 1: (2 2 2), (2 2 2) 329: RESAMPLE 1 1: (2 2 2), (2 2 2) 329: volume_calc_grad complete. 329: bspline_xform_initialize 329: rdims = (2,2,2) 329: vox_per_rgn = (11,11,11) 329: cdims = (5 5 5) 329: Algorithm flavor = o 329: Threading = 0 329: >> Checking JH allocation 329: BSPLINE PARMS 329: max_its = 5 329: max_feval = 5 329: BSPLINE XFORM HEADER 329: vox_per_rgn = 11 11 11 329: roi_offset = 0 0 0 329: roi_dim = 19 19 19 329: img_dc = 1 0 0 0 1 0 0 0 1 329: BST METRICS 329: MET 110100 MSE 1.000000 329: Setting nmax, mmax = 375 21 329: >>> START 329: This problem is unconstrained. 329: [ 0, 0] MSE 18756.248 NV 6859 GM -2992.626 GN 812 [ 0.005 s ] 329: CMIN 0.00 CAVG 0.00 CMAX 0.00 329: LSD 0.00 329: [ 0, 1] MSE 17839.281 NV 6859 GM -3669.916 GN 971 [ 0.005 s ] 329: CMIN -0.06 CAVG 0.01 CMAX 0.67 329: LSD 1.00 329: [ 0, 2] MSE 14291.201 NV 6844 GM -3069.703 GN 827 [ 0.005 s ] 329: CMIN -0.32 CAVG 0.05 CMAX 3.36 329: LSD 5.00 329: [ 0, 3] MSE 3942.469 NV 6280 GM -1514.267 GN 474 [ 0.007 s ] 329: CMIN -1.35 CAVG 0.21 CMAX 14.12 329: LSD 21.00 329: [ 1, 4] MSE 6518.217 NV 5156 GM 1242.011 GN 628 [ 0.007 s ] 329: CMIN -2.29 CAVG 0.47 CMAX 37.57 329: LSD 35.84 329: [ 1, 5] MSE 347.073 NV 5829 GM -219.984 GN 76.6 [ 0.006 s ] 329: CMIN -1.44 CAVG 0.32 CMAX 24.31 329: LSD 15.58 329: [2] xf_out->m_type = 9, xf_in->m_type = 0 329: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 329: bspline_xform_initialize 329: rdims = (2,2,2) 329: vox_per_rgn = (22,22,22) 329: cdims = (5 5 5) 329: ** Registration worker thread finished. 329: Writing transformation ... 329: Warping... 329: Running: plm_warp_native 329: Converting input image... 329: Converting xform... 329: bspline_xform_initialize 329: rdims = (2,2,2) 329: vox_per_rgn = (22,22,22) 329: cdims = (5 5 5) 329: Creating output vf... 329: Creating output volume... 329: Running native warper... 329: bspline_warp complete. 329: Back convert to original type... 329: > Convert vf to itk 329: > Conversion complete. 329: plm_warp_native is complete. 329: Saving image... 329: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o-img.mha 329: Saving vf... 329: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o-vf.mha 329: Load: 0.0991039 329: Run: 0.050056 329: Save: 0.058064 329: Total: 0.207224 329: Finished! 329: 329: STDERR: 329: Not an error 271/578 Test #329: plm-bsp-mse-o ......................... Passed 0.56 sec test 352 Start 352: plm-bsp-openmp-stats 352: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-openmp-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-openmp-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 352: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 352: Test timeout computed to be: 1500 352: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 352: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-openmp-img.mha 352: EXPECTED_ERRNO is 568: RETVAL: 0 568: STDOUT: 568: [PLAN] 568: patient : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha 568: target : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha 568: dose_out : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.mha 568: debug : 0 568: dose norm : 100 568: 568: [SETTINGS] 568: flavor: d ** 568: homo_approx: n ** 568: ray_step: 1 ** 568: aperture_out: ** 568: proj_dose_out: ** 568: proj_img_out: ** 568: range_comp_out: ** 568: sigma_out: ** 568: wed_out: ** 568: beam_weight: 1 ** 568: 568: [GEOMETRY & APERTURE] 568: source: 0 -2000 0 ** 568: isocenter: 0 0 0 ** 568: vup: 0 0 1 ** 568: offset: 1500 ** 568: ap_center in pixels: 20 20 ** 568: i_res: 41 41 ** 568: spacing: 3.75 3.75 ** 568: source_size: 0 ** 568: ap_file_in: ** 568: rc_file_in: ** 568: smearing: 5 ** 568: 568: [PEAK] 568: E0: P0 568: spread: P0 568: weight: P0 568: 568: Start dose calculation Beam 1 568: Plan_calc::compute_beam_dose(beam) entry -- 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: Priority 5. Target detected. 568: Compute target wepl_min_max... 568: Apply lateral smearing to the target... 568: Smearing = 5.000000, Smearing_ap = 3.750000 568: Strel size = (1,1), (3,3) 568: 0 1 0 568: 1 1 1 568: 0 1 0 568: Apply proximal and distal ... 568: Compute max wed... 568: Compute the aperture... 568: Max wed in the target is 117.554 mm. 568: Min wed in the target is 88.5523 mm. 568: Min and max depths in the PTV (target + margins): 88.5523 mm and 117.554 mm. 568: Min and max energies for treating the PTV: 109 MeV and 130 MeV. 568: 568: 22 Mono-energetic BP used: 568: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 568: Optimization of the particle number map for any mono-energetic slice in progress... 568: Adding peak to sobp (130.000000, 1.000000, 1.000000) [0.010000, 140.000000] 568: Adding peak to sobp (129.000000, 1.000000, 1.000000) [0.010000, 140.000000] 568: Adding peak to sobp (128.000000, 1.000000, 1.000000) [0.010000, 140.000000] 568: Adding peak to sobp (127.000000, 1.000000, 1.000000) [0.010000, 140.000000] 568: Adding peak to sobp (126.000000, 1.000000, 1.000000) [0.010000, 140.000000] 568: Adding peak to sobp (125.000000, 1.000000, 1.000000) [0.010000, 140.000000] 568: Adding peak to sobp (124.000000, 1.000000, 1.000000) [0.010000, 140.000000] 568: Adding peak to sobp (123.000000, 1.000000, 1.000000) [0.010000, 140.000000] 568: Adding peak to sobp (122.000000, 1.000000, 1.000000) [0.010000, 140.000000] 568: Adding peak to sobp (121.000000, 1.000000, 1.000000) [0.010000, 140.000000] 568: Adding peak to sobp (120.000000, 1.000000, 1.000000) [0.010000, 140.000000] 568: Adding peak to sobp (119.000000, 1.000000, 1.000000) [0.010000, 140.000000] 568: Adding peak to sobp (118.000000, 1.000000, 1.000000) [0.010000, 140.000000] 568: Adding peak to sobp (117.000000, 1.000000, 1.000000) [0.010000, 140.000000] 568: Adding peak to sobp (116.000000, 1.000000, 1.000000) [0.010000, 140.000000] 568: Adding peak to sobp (115.000000, 1.000000, 1.000000) [0.010000, 140.000000] 568: Adding peak to sobp (114.000000, 1.000000, 1.000000) [0.010000, 140.000000] 568: Adding peak to sobp (113.000000, 1.000000, 1.000000) [0.010000, 140.000000] 568: Adding peak to sobp (112.000000, 1.000000, 1.000000) [0.010000, 140.000000] 568: Adding peak to sobp (111.000000, 1.000000, 1.000000) [0.010000, 140.000000] 568: Adding peak to sobp (110.000000, 1.000000, 1.000000) [0.010000, 140.000000] 568: Adding peak to sobp (109.000000, 1.000000, 1.000000) [0.010000, 140.000000] 568: sigma_img: 41 41 302 568: dim: 41 41 302 568: Sigma patient computed - sigma_pt_max = 2.87445 mm. 568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 568: Sigma range compensator computed - sigma_rc_max = 0 mm. 568: Global sigma computed - Global sigma_max = 2.87445 mm. 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: sigma_img: 41 41 302 568: dim: 41 41 302 568: Sigma patient computed - sigma_pt_max = 2.86823 mm. 568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 568: Sigma range compensator computed - sigma_rc_max = 0 mm. 568: Global sigma computed - Global sigma_max = 2.86823 mm. 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: sigma_img: 41 41 302 568: dim: 41 41 302 568: Sigma patient computed - sigma_pt_max = 2.81247 mm. 568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 568: Sigma range compensator computed - sigma_rc_max = 0 mm. 568: Global sigma computed - Global sigma_max = 2.81247 mm. 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: sigma_img: 41 41 302 568: dim: 41 41 302 568: Sigma patient computed - sigma_pt_max = 2.80639 mm. 568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 568: Sigma range compensator computed - sigma_rc_max = 0 mm. 568: Global sigma computed - Global sigma_max = 2.80639 mm. 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: sigma_img: 41 41 302 568: dim: 41 41 302 568: Sigma patient computed - sigma_pt_max = 2.74919 mm. 568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 568: Sigma range compensator computed - sigma_rc_max = 0 mm. 568: Global sigma computed - Global sigma_max = 2.74919 mm. 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: sigma_img: 41 41 302 568: dim: 41 41 302 568: Sigma patient computed - sigma_pt_max = 2.69289 mm. 568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 568: Sigma range compensator computed - sigma_rc_max = 0 mm. 568: Global sigma computed - Global sigma_max = 2.69289 mm. 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: sigma_img: 41 41 302 568: dim: 41 41 302 568: Sigma patient computed - sigma_pt_max = 2.68596 mm. 568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 568: Sigma range compensator computed - sigma_rc_max = 0 mm. 568: Global sigma computed - Global sigma_max = 2.68596 mm. 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: sigma_img: 41 41 302 568: dim: 41 41 302 568: Sigma patient computed - sigma_pt_max = 2.62886 mm. 568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 568: Sigma range compensator computed - sigma_rc_max = 0 mm. 568: Global sigma computed - Global sigma_max = 2.62886 mm. 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: sigma_img: 41 41 302 568: dim: 41 41 302 568: Sigma patient computed - sigma_pt_max = 2.57127 mm. 568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 568: Sigma range compensator computed - sigma_rc_max = 0 mm. 568: Global sigma computed - Global sigma_max = 2.57127 mm. 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: sigma_img: 41 41 302 568: dim: 41 41 302 568: Sigma patient computed - sigma_pt_max = 2.56307 mm. 568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 568: Sigma range compensator computed - sigma_rc_max = 0 mm. 568: Global sigma computed - Global sigma_max = 2.56307 mm. 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: sigma_img: 41 41 302 568: dim: 41 41 302 568: Sigma patient computed - sigma_pt_max = 2.50537 mm. 568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 568: Sigma range compensator computed - sigma_rc_max = 0 mm. 568: Global sigma computed - Global sigma_max = 2.50537 mm. 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: sigma_img: 41 41 302 568: dim: 41 41 302 568: Sigma patient computed - sigma_pt_max = 2.49685 mm. 568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 568: Sigma range compensator computed - sigma_rc_max = 0 mm. 568: Global sigma computed - Global sigma_max = 2.49685 mm. 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: sigma_img: 41 41 302 568: dim: 41 41 302 568: Sigma patient computed - sigma_pt_max = 2.4384 mm. 568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 568: Sigma range compensator computed - sigma_rc_max = 0 mm. 568: Global sigma computed - Global sigma_max = 2.4384 mm. 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: sigma_img: 41 41 302 568: dim: 41 41 302 568: Sigma patient computed - sigma_pt_max = 2.42949 mm. 568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 568: Sigma range compensator computed - sigma_rc_max = 0 mm. 568: Global sigma computed - Global sigma_max = 2.42949 mm. 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: sigma_img: 41 41 302 568: dim: 41 41 302 568: Sigma patient computed - sigma_pt_max = 2.37035 mm. 568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 568: Sigma range compensator computed - sigma_rc_max = 0 mm. 568: Global sigma computed - Global sigma_max = 2.37035 mm. 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: sigma_img: 41 41 302 568: dim: 41 41 302 568: Sigma patient computed - sigma_pt_max = 2.36098 mm. 568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 568: Sigma range compensator computed - sigma_rc_max = 0 mm. 568: Global sigma computed - Global sigma_max = 2.36098 mm. 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: sigma_img: 41 41 302 568: dim: 41 41 302 568: Sigma patient computed - sigma_pt_max = 2.30119 mm. 568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 568: Sigma range compensator computed - sigma_rc_max = 0 mm. 568: Global sigma computed - Global sigma_max = 2.30119 mm. 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: sigma_img: 41 41 302 568: dim: 41 41 302 568: Sigma patient computed - sigma_pt_max = 2.29132 mm. 568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 568: Sigma range compensator computed - sigma_rc_max = 0 mm. 568: Global sigma computed - Global sigma_max = 2.29132 mm. 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: sigma_img: 41 41 302 568: dim: 41 41 302 568: Sigma patient computed - sigma_pt_max = 2.23096 mm. 568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 568: Sigma range compensator computed - sigma_rc_max = 0 mm. 568: Global sigma computed - Global sigma_max = 2.23096 mm. 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: sigma_img: 41 41 302 568: dim: 41 41 302 568: Sigma patient computed - sigma_pt_max = 2.22053 mm. 568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 568: Sigma range compensator computed - sigma_rc_max = 0 mm. 568: Global sigma computed - Global sigma_max = 2.22053 mm. 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: sigma_img: 41 41 302 568: dim: 41 41 302 568: Sigma patient computed - sigma_pt_max = 2.15969 mm. 568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 568: Sigma range compensator computed - sigma_rc_max = 0 mm. 568: Global sigma computed - Global sigma_max = 2.15969 mm. 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: sigma_img: 41 41 302 568: dim: 41 41 302 568: Sigma patient computed - sigma_pt_max = 2.14863 mm. 568: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 568: Sigma range compensator computed - sigma_rc_max = 0 mm. 568: Global sigma computed - Global sigma_max = 2.14863 mm. 568: Setting RVRTS = 1 568: FPD = 347.500001, BPD = 649.116731 568: 41 41 302 568: Raw dose at the maximum (0, 5, 0) : 10.689 A.U. 568: Dose normalized at the maximum to 1 x 100%. 568: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm 568: Trying to write mebs in /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d-pn.txt 568: Ap 41 41 568: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.mha 568: Sigma: 0.401744 seconds 568: Calc: 5.424487 seconds 568: IO: 0.169268 seconds 568: Reformat: 0.048943 seconds 568: Misc: 0.038905 seconds 568: done. 568: 568: Total execution time : 6.084324 seconds. 568: 568: STDERR: 568: Not an error 272/578 Test #568: proton-dose-5d ........................ Passed 6.52 sec test 354 Start 354: plm-bsp-resume 354: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-resume" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 354: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 354: Test timeout computed to be: 1500 333: RETVAL: 0 333: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 333: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 333: Launching registration worker thread 333: Inside registration worker thread 333: Doing registration stage 333: [1] xf_in->m_type = 0, xf_out->m_type = 0 333: RESAMPLE 1 1: (2 2 2), (2 2 2) 333: RESAMPLE 1 1: (2 2 2), (2 2 2) 333: volume_calc_grad complete. 333: bspline_xform_initialize 333: rdims = (2,2,2) 333: vox_per_rgn = (11,11,11) 333: cdims = (5 5 5) 333: Algorithm flavor = q 333: Threading = 0 333: >> Checking JH allocation 333: BSPLINE PARMS 333: max_its = 5 333: max_feval = 5 333: BSPLINE XFORM HEADER 333: vox_per_rgn = 11 11 11 333: roi_offset = 0 0 0 333: roi_dim = 19 19 19 333: img_dc = 1 0 0 0 1 0 0 0 1 333: BST METRICS 333: MET 110100 MSE 1.000000 333: Setting nmax, mmax = 375 21 333: >>> START 333: This problem is unconstrained. 333: [ 0, 0] MSE 18756.236 NV 6859 GM -3516.347 GN 958 [ 0.007 s ] 333: CMIN 0.00 CAVG 0.00 CMAX 0.00 333: LSD 0.00 333: [ 0, 1] MSE 17837.807 NV 6859 GM -3671.469 GN 971 [ 0.007 s ] 333: CMIN -0.05 CAVG 0.01 CMAX 0.68 333: LSD 1.00 333: [ 0, 2] MSE 14356.300 NV 6850 GM -3106.959 GN 834 [ 0.008 s ] 333: CMIN -0.27 CAVG 0.05 CMAX 3.40 333: LSD 5.00 333: [ 1, 3] MSE 822.836 NV 5638 GM 866.827 GN 180 [ 0.010 s ] 333: CMIN -2.31 CAVG 0.43 CMAX 26.12 333: LSD 35.51 333: [ 2, 4] MSE 332.350 NV 5821 GM -189.482 GN 52.6 [ 0.004 s ] 333: CMIN -2.36 CAVG 0.35 CMAX 22.13 333: LSD 6.00 333: [ 3, 5] MSE 268.170 NV 5826 GM -99.417 GN 39.3 [ 0.011 s ] 333: CMIN -2.20 CAVG 0.36 CMAX 21.85 333: LSD 1.43 333: [2] xf_out->m_type = 9, xf_in->m_type = 0 333: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 333: bspline_xform_initialize 333: rdims = (2,2,2) 333: vox_per_rgn = (22,22,22) 333: cdims = (5 5 5) 333: ** Registration worker thread finished. 333: Writing transformation ... 333: Warping... 333: Running: plm_warp_native 333: Converting input image... 333: Converting xform... 333: bspline_xform_initialize 333: rdims = (2,2,2) 333: vox_per_rgn = (22,22,22) 333: cdims = (5 5 5) 333: Creating output vf... 333: Creating output volume... 333: Running native warper... 333: bspline_warp complete. 333: Back convert to original type... 333: > Convert vf to itk 333: > Conversion complete. 333: plm_warp_native is complete. 333: Saving image... 333: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q-img.mha 333: Saving vf... 333: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q-vf.mha 333: Load: 0.0778549 333: Run: 0.072247 333: Save: 0.092989 333: Total: 0.243091 333: Finished! 333: 333: STDERR: 333: Not an error 273/578 Test #333: plm-bsp-mse-q ......................... Passed 0.58 sec test 356 Start 356: plm-bsp-logfile 356: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-logfile" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 356: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 356: Test timeout computed to be: 1500 354: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 354: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume.txt 354: EXPECTED_ERRNO is 324: RETVAL: 0 324: STDOUT: MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 324: 324: STDERR: 324: Not an error 356: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 356: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile.txt 356: EXPECTED_ERRNO is 274/578 Test #324: plm-bsp-mse-k-stats ................... Passed 0.74 sec test 359 Start 359: plm-bsp-ushort-stats 359: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-ushort-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 359: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 359: Test timeout computed to be: 1500 359: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 359: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-img.mha 359: EXPECTED_ERRNO is 338: RETVAL: 0 338: STDOUT: MIN -998.614563 AVE -113.473007 MAX -0.004266 NONZERO 54872 NUMVOX 54872 338: 338: STDERR: 338: Not an error 275/578 Test #338: plm-bsp-mi-c-stats .................... Passed 0.45 sec test 362 Start 362: plm-bsp-double-stats 362: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-double-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 362: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 362: Test timeout computed to be: 1500 362: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 362: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-img.mha 362: EXPECTED_ERRNO is 305: RETVAL: 0 305: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 305: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 305: Launching registration worker thread 305: Inside registration worker thread 305: Doing registration stage 305: [1] xf_in->m_type = 0, xf_out->m_type = 0 305: Ready to start registration. 305: MSE [ 0] 18945.891 [ 0.161 secs] 305: MSE [ 1] 9795.787 [ 0.140 secs] 305: MSE [ 2] 3911.273 [ 0.121 secs] 305: MSE [ 3] 1186.045 [ 0.148 secs] 305: MSE [ 4] 314.763 [ 0.159 secs] 305: Done with registration. Writing output... 305: Deformation stats (out) 305: VF_MAX = 102.433 VF_AVG = 31.2783 305: [2] xf_out->m_type = 8, xf_in->m_type = 0 305: ** Registration worker thread finished. 305: Warping... 305: plm_warp_itk: xform_to_itk_vf 305: plm_warp_itk: convert_to_itk 305: plm_warp_itk: warping... 305: Saving image... 305: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff-img.mha 305: Saving vf... 305: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff-vf.mha 305: Load: 0.135431 305: Run: 0.739903 305: Save: 0.0149331 305: Total: 0.890267 305: Finished! 305: 305: STDERR: 305: Not an error 276/578 Test #305: plm-reg-itk-demons-diff ............... Passed 1.43 sec test 366 Start 366: plm-bsp-char-output-stats 366: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-char-output-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 366: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 366: Test timeout computed to be: 1500 341: RETVAL: 0 341: STDOUT: MIN -991.894104 AVE -128.919357 MAX 0.000000 NONZERO 48385 NUMVOX 54872 341: 341: STDERR: 341: Not an error 331: RETVAL: 0 331: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 331: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 331: Launching registration worker thread 331: Inside registration worker thread 331: Doing registration stage 331: [1] xf_in->m_type = 0, xf_out->m_type = 0 331: RESAMPLE 1 1: (2 2 2), (2 2 2) 331: RESAMPLE 1 1: (2 2 2), (2 2 2) 331: volume_calc_grad complete. 331: bspline_xform_initialize 331: rdims = (2,2,2) 331: vox_per_rgn = (11,11,11) 331: cdims = (5 5 5) 331: Algorithm flavor = p 331: Threading = 0 331: >> Checking JH allocation 331: BSPLINE PARMS 331: max_its = 5 331: max_feval = 5 331: BSPLINE XFORM HEADER 331: vox_per_rgn = 11 11 11 331: roi_offset = 0 0 0 331: roi_dim = 19 19 19 331: img_dc = 1 0 0 0 1 0 0 0 1 331: BST METRICS 331: MET 110100 MSE 1.000000 331: Setting nmax, mmax = 375 21 331: >>> START 331: This problem is unconstrained. 331: [ 0, 0] MSE 18756.236 NV 6859 GM -3516.347 GN 958 [ 0.042 s ] 331: CMIN 0.00 CAVG 0.00 CMAX 0.00 331: LSD 0.00 331: [ 0, 1] MSE 17837.807 NV 6859 GM -3671.469 GN 971 [ 0.052 s ] 331: CMIN -0.05 CAVG 0.01 CMAX 0.68 331: LSD 1.00 331: [ 0, 2] MSE 14356.300 NV 6850 GM -3106.959 GN 834 [ 0.031 s ] 331: CMIN -0.27 CAVG 0.05 CMAX 3.40 331: LSD 5.00 331: [ 1, 3] MSE 822.836 NV 5638 GM 866.827 GN 180 [ 0.035 s ] 331: CMIN -2.31 CAVG 0.43 CMAX 26.12 331: LSD 35.51 331: [ 2, 4] MSE 332.350 NV 5821 GM -189.482 GN 52.6 [ 0.041 s ] 331: CMIN -2.36 CAVG 0.35 CMAX 22.13 331: LSD 6.00 331: [ 3, 5] MSE 268.170 NV 5826 GM -99.417 GN 39.3 [ 0.027 s ] 331: CMIN -2.20 CAVG 0.36 CMAX 21.85 331: LSD 1.43 331: [2] xf_out->m_type = 9, xf_in->m_type = 0 331: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 331: bspline_xform_initialize 331: rdims = (2,2,2) 331: vox_per_rgn = (22,22,22) 331: cdims = (5 5 5) 331: ** Registration worker thread finished. 331: Writing transformation ... 331: Warping... 331: Running: plm_warp_native 331: Converting input image... 331: Converting xform... 331: bspline_xform_initialize 331: rdims = (2,2,2) 331: vox_per_rgn = (22,22,22) 331: cdims = (5 5 5) 331: Creating output vf... 331: Creating output volume... 331: Running native warper... 331: bspline_warp complete. 331: Back convert to original type... 331: > Convert vf to itk 331: > Conversion complete. 331: plm_warp_native is complete. 331: Saving image... 331: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p-img.mha 331: Saving vf... 331: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p-vf.mha 331: Load: 0.119769 331: Run: 0.269736 331: Save: 0.0760951 331: Total: 0.4656 331: Finished! 331: 331: STDERR: 331: Not an error 366: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 366: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output.mha 366: EXPECTED_ERRNO is 277/578 Test #331: plm-bsp-mse-p ......................... Passed 1.09 sec test 368 Start 368: plm-bsp-rect 368: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-rect" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 368: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 368: Test timeout computed to be: 1500 278/578 Test #341: plm-bsp-mi-c-2-stats .................. Passed 0.84 sec test 370 Start 370: plm-bsp-regularize-none-stats 370: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-none-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 370: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 370: Test timeout computed to be: 1500 335: RETVAL: 0 335: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 335: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 335: Launching registration worker thread 335: Inside registration worker thread 335: Doing registration stage 335: [1] xf_in->m_type = 0, xf_out->m_type = 0 335: RESAMPLE 1 1: (2 2 2), (2 2 2) 335: RESAMPLE 1 1: (2 2 2), (2 2 2) 335: volume_calc_grad complete. 335: bspline_xform_initialize 335: rdims = (2,2,2) 335: vox_per_rgn = (11,11,11) 335: cdims = (5 5 5) 335: Algorithm flavor = r 335: Threading = 0 335: >> Checking JH allocation 335: BSPLINE PARMS 335: max_its = 5 335: max_feval = 5 335: BSPLINE XFORM HEADER 335: vox_per_rgn = 11 11 11 335: roi_offset = 0 0 0 335: roi_dim = 19 19 19 335: img_dc = 1 0 0 0 1 0 0 0 1 335: BST METRICS 335: MET 110100 MSE 1.000000 335: Setting nmax, mmax = 375 21 335: >>> START 335: This problem is unconstrained. 335: [ 0, 0] MSE 18756.236 NV 6859 GM -3516.347 GN 958 [ 0.057 s ] 335: CMIN 0.00 CAVG 0.00 CMAX 0.00 335: LSD 0.00 335: [ 0, 1] MSE 17837.807 NV 6859 GM -3671.469 GN 971 [ 0.024 s ] 335: CMIN -0.05 CAVG 0.01 CMAX 0.68 335: LSD 1.00 335: [ 0, 2] MSE 14356.300 NV 6850 GM -3106.959 GN 834 [ 0.047 s ] 335: CMIN -0.27 CAVG 0.05 CMAX 3.40 335: LSD 5.00 335: [ 1, 3] MSE 822.836 NV 5638 GM 866.827 GN 180 [ 0.044 s ] 335: CMIN -2.31 CAVG 0.43 CMAX 26.12 335: LSD 35.51 335: [ 2, 4] MSE 332.350 NV 5821 GM -189.482 GN 52.6 [ 0.032 s ] 335: CMIN -2.36 CAVG 0.35 CMAX 22.13 335: LSD 6.00 335: [ 3, 5] MSE 268.170 NV 5826 GM -99.417 GN 39.3 [ 0.044 s ] 335: CMIN -2.20 CAVG 0.36 CMAX 21.85 335: LSD 1.43 335: [2] xf_out->m_type = 9, xf_in->m_type = 0 335: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 335: bspline_xform_initialize 335: rdims = (2,2,2) 335: vox_per_rgn = (22,22,22) 335: cdims = (5 5 5) 335: ** Registration worker thread finished. 335: Writing transformation ... 335: Warping... 335: Running: plm_warp_native 335: Converting input image... 335: Converting xform... 335: bspline_xform_initialize 335: rdims = (2,2,2) 335: vox_per_rgn = (22,22,22) 335: cdims = (5 5 5) 335: Creating output vf... 335: Creating output volume... 335: Running native warper... 335: bspline_warp complete. 335: Back convert to original type... 335: > Convert vf to itk 335: > Conversion complete. 335: plm_warp_native is complete. 335: Saving image... 335: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r-img.mha 335: Saving vf... 335: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r-vf.mha 335: Load: 0.100695 335: Run: 0.283836 335: Save: 0.0636401 335: Total: 0.448171 335: Finished! 335: 335: STDERR: 335: Not an error 279/578 Test #335: plm-bsp-mse-r ......................... Passed 0.92 sec test 373 Start 373: plm-bsp-regularize-analytic-stats 373: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-analytic-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 373: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 373: Test timeout computed to be: 1500 347: RETVAL: 0 347: STDOUT: MIN -997.631409 AVE -121.961853 MAX 0.000000 NONZERO 49452 NUMVOX 54872 347: 347: STDERR: 347: Not an error 280/578 Test #347: plm-bsp-gm-k-stats .................... Passed 0.78 sec test 376 Start 376: plm-bsp-regularize-numeric-stats 376: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-numeric-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 376: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 376: Test timeout computed to be: 1500 368: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 368: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect.txt 368: EXPECTED_ERRNO is 370: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 370: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-vf.mha 370: EXPECTED_ERRNO is 373: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 373: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-vf.mha 373: EXPECTED_ERRNO is 307: RETVAL: 0 307: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 307: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 307: Launching registration worker thread 307: Inside registration worker thread 307: Doing registration stage 307: [1] xf_in->m_type = 0, xf_out->m_type = 0 307: Ready to start registration. 307: MSE [ 0] 18945.891 [ 0.139 secs] 307: MSE [ 1] 9788.487 [ 0.143 secs] 307: MSE [ 2] 4038.212 [ 0.162 secs] 307: MSE [ 3] 1283.245 [ 0.177 secs] 307: MSE [ 4] 392.878 [ 0.216 secs] 307: Done with registration. Writing output... 307: Deformation stats (out) 307: VF_MAX = 112.668 VF_AVG = 32.7138 307: [2] xf_out->m_type = 8, xf_in->m_type = 0 307: ** Registration worker thread finished. 307: Warping... 307: plm_warp_itk: xform_to_itk_vf 307: plm_warp_itk: convert_to_itk 307: plm_warp_itk: warping... 307: Saving image... 307: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd-img.mha 307: Saving vf... 307: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd-vf.mha 307: Load: 0.0888159 307: Run: 0.854699 307: Save: 0.0166299 307: Total: 0.960145 307: Finished! 307: 307: STDERR: 307: Not an error 281/578 Test #307: plm-reg-itk-demons-logd ............... Passed 1.53 sec test 380 Start 380: plm-bsp-landmark-b-stats 380: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 380: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 380: Test timeout computed to be: 1500 344: RETVAL: 0 344: STDOUT: MIN -998.614563 AVE -113.473007 MAX -0.004266 NONZERO 54872 NUMVOX 54872 344: 344: STDERR: 344: Not an error 376: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 376: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-vf.mha 376: EXPECTED_ERRNO is 282/578 Test #344: plm-bsp-mi-k-stats .................... Passed 0.86 sec test 383 Start 383: plm-bsp-landmark-c-stats 383: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 383: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 383: Test timeout computed to be: 1500 380: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 380: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-img.mha 380: EXPECTED_ERRNO is 383: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 383: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-img.mha 383: EXPECTED_ERRNO is 352: RETVAL: 0 352: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 352: 352: STDERR: 352: Not an error 283/578 Test #352: plm-bsp-openmp-stats .................. Passed 0.72 sec test 386 Start 386: plm-bsp-landmark-d-stats 386: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 386: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 386: Test timeout computed to be: 1500 359: RETVAL: 0 359: STDOUT: MIN 0.000000 AVE 107.313034 MAX 997.000000 NONZERO 44294 NUMVOX 54872 359: 359: STDERR: 359: Not an error 284/578 Test #359: plm-bsp-ushort-stats .................. Passed 0.65 sec test 389 Start 389: plm-bsp-landmark-e-stats 389: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-e-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 389: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 389: Test timeout computed to be: 1500 309: RETVAL: 0 309: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 309: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 309: Launching registration worker thread 309: Inside registration worker thread 309: Doing registration stage 309: [1] xf_in->m_type = 0, xf_out->m_type = 0 309: Ready to start registration. 309: MSE [ 0] 18945.891 [ 0.102 secs] 309: MSE [ 1] 9778.825 [ 0.185 secs] 309: MSE [ 2] 3980.165 [ 0.229 secs] 309: MSE [ 3] 1233.515 [ 0.298 secs] 309: MSE [ 4] 374.936 [ 0.320 secs] 309: Done with registration. Writing output... 309: Deformation stats (out) 309: VF_MAX = 109.365 VF_AVG = 31.9237 309: [2] xf_out->m_type = 8, xf_in->m_type = 0 309: ** Registration worker thread finished. 309: Warping... 309: plm_warp_itk: xform_to_itk_vf 309: plm_warp_itk: convert_to_itk 309: plm_warp_itk: warping... 309: Saving image... 309: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd-img.mha 309: Saving vf... 309: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd-vf.mha 309: Load: 0.126233 309: Run: 1.13742 309: Save: 0.011874 309: Total: 1.27553 309: Finished! 309: 309: STDERR: 309: Not an error 386: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 386: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-img.mha 386: EXPECTED_ERRNO is 389: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 389: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-img.mha 389: EXPECTED_ERRNO is 285/578 Test #309: plm-reg-itk-demons-sym-logd ........... Passed 1.68 sec test 392 Start 392: plm-bsp-dcos-a-stats 392: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 392: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 392: Test timeout computed to be: 1500 392: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 392: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-img.nrrd 392: EXPECTED_ERRNO is 354: RETVAL: 0 354: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 354: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 354: Launching registration worker thread 354: Inside registration worker thread 354: Doing registration stage 354: [1] xf_in->m_type = 0, xf_out->m_type = 0 354: RESAMPLE 1 1: (2 2 2), (2 2 2) 354: RESAMPLE 1 1: (2 2 2), (2 2 2) 354: volume_calc_grad complete. 354: bspline_xform_initialize 354: rdims = (2,2,2) 354: vox_per_rgn = (11,11,11) 354: cdims = (5 5 5) 354: Algorithm flavor = c 354: Threading = 0 354: >> Checking JH allocation 354: BSPLINE PARMS 354: max_its = 5 354: max_feval = 5 354: BSPLINE XFORM HEADER 354: vox_per_rgn = 11 11 11 354: roi_offset = 0 0 0 354: roi_dim = 19 19 19 354: img_dc = 1 0 0 0 1 0 0 0 1 354: BST METRICS 354: MET 110100 MSE 1.000000 354: Setting nmax, mmax = 375 21 354: >>> START 354: This problem is unconstrained. 354: [ 0, 0] MSE 18756.248 NV 6859 GM -2980.062 GN 852 [ 0.005 s ] 354: CMIN 0.00 CAVG 0.00 CMAX 0.00 354: LSD 0.00 354: [ 0, 1] MSE 17838.643 NV 6859 GM -2882.390 GN 824 [ 0.009 s ] 354: CMIN -0.07 CAVG 0.01 CMAX 0.68 354: LSD 1.00 354: [ 0, 2] MSE 14464.868 NV 6858 GM -2822.145 GN 824 [ 0.005 s ] 354: CMIN -0.35 CAVG 0.05 CMAX 3.40 354: LSD 5.00 354: [ 0, 3] MSE 3829.069 NV 6286 GM -1585.570 GN 459 [ 0.004 s ] 354: CMIN -1.48 CAVG 0.20 CMAX 14.26 354: LSD 21.00 354: [ 1, 4] MSE 3098.610 NV 5455 GM 1176.112 GN 399 [ 0.004 s ] 354: CMIN -1.74 CAVG 0.44 CMAX 32.50 354: LSD 27.95 354: [ 2, 5] MSE 282.038 NV 5851 GM 54.493 GN 43.4 [ 0.005 s ] 354: CMIN -1.73 CAVG 0.34 CMAX 23.99 354: LSD 13.11 354: [2] xf_out->m_type = 9, xf_in->m_type = 0 354: Doing registration stage 354: [1] xf_in->m_type = 9, xf_out->m_type = 0 354: RESAMPLE 1 1: (2 2 2), (2 2 2) 354: RESAMPLE 1 1: (2 2 2), (2 2 2) 354: volume_calc_grad complete. 354: bspline_xform_initialize 354: rdims = (2,2,2) 354: vox_per_rgn = (11,11,11) 354: cdims = (5 5 5) 354: Algorithm flavor = c 354: Threading = 0 354: >> Checking JH allocation 354: BSPLINE PARMS 354: max_its = 5 354: max_feval = 5 354: BSPLINE XFORM HEADER 354: vox_per_rgn = 11 11 11 354: roi_offset = 0 0 0 354: roi_dim = 19 19 19 354: img_dc = 1 0 0 0 1 0 0 0 1 354: BST METRICS 354: MET 110100 MSE 1.000000 354: Setting nmax, mmax = 375 21 354: >>> START 354: This problem is unconstrained. 354: [ 0, 0] MSE 282.038 NV 5851 GM 54.493 GN 43.4 [ 0.004 s ] 354: CMIN -1.73 CAVG 0.34 CMAX 23.99 354: LSD 0.00 354: [ 0, 1] MSE 245.572 NV 5873 GM -24.090 GN 31.6 [ 0.004 s ] 354: CMIN -1.74 CAVG 0.33 CMAX 23.36 354: LSD 1.00 354: [ 1, 2] MSE 184.553 NV 5937 GM -53.657 GN 19.1 [ 0.004 s ] 354: CMIN -1.91 CAVG 0.35 CMAX 21.57 354: LSD 3.72 354: [ 2, 3] MSE 169.679 NV 5953 GM -95.518 GN 19.6 [ 0.005 s ] 354: CMIN -2.31 CAVG 0.35 CMAX 20.63 354: LSD 2.11 354: [ 3, 4] MSE 160.980 NV 5975 GM -14.478 GN 20.7 [ 0.005 s ] 354: CMIN -3.42 CAVG 0.39 CMAX 17.80 354: LSD 5.62 354: [ 4, 5] MSE 133.675 NV 5940 GM -9.965 GN 18.9 [ 0.005 s ] 354: CMIN -3.93 CAVG 0.41 CMAX 17.38 354: LSD 2.38 354: [2] xf_out->m_type = 9, xf_in->m_type = 9 354: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 354: bspline_xform_initialize 354: rdims = (2,2,2) 354: vox_per_rgn = (22,22,22) 354: cdims = (5 5 5) 354: ** Registration worker thread finished. 354: Writing transformation ... 354: Warping... 354: Running: plm_warp_native 354: Converting input image... 354: Converting xform... 354: bspline_xform_initialize 354: rdims = (2,2,2) 354: vox_per_rgn = (22,22,22) 354: cdims = (5 5 5) 354: Creating output vf... 354: Creating output volume... 354: Running native warper... 354: bspline_warp complete. 354: Back convert to original type... 354: > Convert vf to itk 354: > Conversion complete. 354: plm_warp_native is complete. 354: Saving image... 354: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume-img.mha 354: Saving vf... 354: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume-vf.mha 354: Load: 0.05985 354: Run: 0.0839489 354: Save: 0.0808792 354: Total: 0.224678 354: Finished! 354: 354: STDERR: 354: Not an error 286/578 Test #354: plm-bsp-resume ........................ Passed 0.81 sec test 395 Start 395: plm-bsp-dcos-b-stats 395: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 395: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 395: Test timeout computed to be: 1500 395: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 395: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-img.nrrd 395: EXPECTED_ERRNO is 349: RETVAL: 0 349: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 349: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 349: Loading fixed image [1]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 349: Loading moving image [1]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 349: Launching registration worker thread 349: Inside registration worker thread 349: Doing registration stage 349: [1] xf_in->m_type = 0, xf_out->m_type = 0 349: RESAMPLE 1 1: (2 2 2), (2 2 2) 349: RESAMPLE 1 1: (2 2 2), (2 2 2) 349: volume_calc_grad_mag complete. 349: volume_calc_grad_mag complete. 349: volume_calc_grad complete. 349: RESAMPLE 1 1: (2 2 2), (2 2 2) 349: RESAMPLE 1 1: (2 2 2), (2 2 2) 349: volume_calc_grad complete. 349: bspline_xform_initialize 349: rdims = (2,2,2) 349: vox_per_rgn = (11,11,11) 349: cdims = (5 5 5) 349: Algorithm flavor = c 349: Threading = 0 349: >> Checking JH allocation 349: >> Performing JH allocation 349: BSPLINE PARMS 349: max_its = 5 349: max_feval = 5 349: BSPLINE XFORM HEADER 349: vox_per_rgn = 11 11 11 349: roi_offset = 0 0 0 349: roi_dim = 19 19 19 349: img_dc = 1 0 0 0 1 0 0 0 1 349: BST METRICS 349: MET 110100 GM 0.100000 349: MET 110100 MI 100.000000 349: >> Performing JH initialization 349: Setting nmax, mmax = 375 21 349: >>> START 349: This problem is unconstrained. 349: [ 0, 0] SCORE -23.086 NV 6859 GM 11.933 GN 2.8 [ 0.027 s ] 349: GM 172.276 MI -0.4031359 CMIN 0.01 CAVG 0.01 CMAX 0.01 349: LSD 0.00 349: [ 0, 1] SCORE -21.366 NV 6859 GM -20.848 GN 4.05 [ 0.028 s ] 349: GM 172.158 MI -0.3858200 CMIN -0.49 CAVG -0.00 CMAX 0.08 349: LSD 1.00 349: [ 0, 2] SCORE -22.915 NV 6859 GM -12.881 GN 2.54 [ 0.031 s ] 349: GM 172.298 MI -0.4014443 CMIN -0.08 CAVG 0.01 CMAX 0.02 349: LSD 0.18 349: [ 0, 3] SCORE -23.222 NV 6859 GM -1.121 GN 1.07 [ 0.031 s ] 349: GM 172.313 MI -0.4045370 CMIN -0.01 CAVG 0.01 CMAX 0.01 349: LSD 0.05 349: [ 1, 4] SCORE -23.229 NV 6859 GM 16.621 GN 3.63 [ 0.059 s ] 349: GM 172.348 MI -0.4046354 CMIN -0.01 CAVG 0.01 CMAX 0.01 349: LSD 0.01 349: [ 2, 5] SCORE -22.889 NV 6859 GM -16.998 GN 4.96 [ 0.035 s ] 349: GM 172.750 MI -0.4016393 CMIN -0.14 CAVG 0.01 CMAX 0.04 349: LSD 0.20 349: [2] xf_out->m_type = 9, xf_in->m_type = 0 349: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 349: bspline_xform_initialize 349: rdims = (2,2,2) 349: vox_per_rgn = (22,22,22) 349: cdims = (5 5 5) 349: ** Registration worker thread finished. 349: Writing transformation ... 349: Warping... 349: Running: plm_warp_native 349: Converting input image... 349: Converting xform... 349: bspline_xform_initialize 349: rdims = (2,2,2) 349: vox_per_rgn = (22,22,22) 349: cdims = (5 5 5) 349: Creating output vf... 349: Creating output volume... 349: Running native warper... 349: bspline_warp complete. 349: Back convert to original type... 349: > Convert vf to itk 349: > Conversion complete. 349: plm_warp_native is complete. 349: Saving image... 349: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a-img.mha 349: Saving vf... 349: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a-vf.mha 349: Load: 0.130703 349: Run: 0.269177 349: Save: 0.0649168 349: Total: 0.464797 349: Finished! 349: 349: STDERR: 349: Not an error 287/578 Test #349: plm-bsp-sm-multi-a .................... Passed 1.17 sec test 398 Start 398: plm-bsp-dcos-c-stats 398: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 398: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 398: Test timeout computed to be: 1500 362: RETVAL: 0 362: STDOUT: MIN 0.000000 AVE 108.147682 MAX 998.045227 NONZERO 46833 NUMVOX 54872 362: 362: STDERR: 362: Not an error 288/578 Test #362: plm-bsp-double-stats .................. Passed 0.85 sec test 401 Start 401: plm-bsp-dcos-d-stats 401: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 401: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 401: Test timeout computed to be: 1500 398: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 398: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-img.nrrd 398: EXPECTED_ERRNO is 373: RETVAL: 0 373: STDOUT: Min: -7.802 -7.802 -7.802 373: Mean: -0.007 -0.007 -0.007 373: Max: 7.755 7.755 7.755 373: Mean abs: 0.234 0.234 0.234 373: Ave len: 0.474 373: Jacobian: MINJAC 0.419027 MAXJAC 1.04996 373: Energy: MINDIL -0.755 MAXDIL 0.0517541 373: MAXSTRAIN 0.0532 TOTSTRAIN 83.3434 373: Second derivatives: MINSECDER 2.4e-12 MAXSECDER 0.0192 373: AVESECDER 0.000198 INTSECDER 2.47e+04 373: Max second derivative at: (20 16 20) 373: 373: STDERR: 373: Not an error 289/578 Test #373: plm-bsp-regularize-analytic-stats ..... Passed 0.51 sec test 404 Start 404: plm-bsp-dcos-e-stats 404: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-e-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 404: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 404: Test timeout computed to be: 1500 401: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 401: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-img.nrrd 401: EXPECTED_ERRNO is 356: RETVAL: 0 356: STDOUT: Plastimatch 1.9.4 356: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 356: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 356: Launching registration worker thread 356: Inside registration worker thread 356: Doing registration stage 356: [1] xf_in->m_type = 0, xf_out->m_type = 0 356: RESAMPLE 1 1: (2 2 2), (2 2 2) 356: RESAMPLE 1 1: (2 2 2), (2 2 2) 356: volume_calc_grad complete. 356: bspline_xform_initialize 356: rdims = (2,2,2) 356: vox_per_rgn = (11,11,11) 356: cdims = (5 5 5) 356: Algorithm flavor = g 356: Threading = 0 356: >> Checking JH allocation 356: BSPLINE PARMS 356: max_its = 5 356: max_feval = 5 356: BSPLINE XFORM HEADER 356: vox_per_rgn = 11 11 11 356: roi_offset = 0 0 0 356: roi_dim = 19 19 19 356: img_dc = 1 0 0 0 1 0 0 0 1 356: BST METRICS 356: MET 110100 MSE 1.000000 356: Setting nmax, mmax = 375 21 356: >>> START 356: This problem is unconstrained. 356: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.040 s ] 356: CMIN 0.00 CAVG 0.00 CMAX 0.00 356: LSD 0.00 356: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.016 s ] 356: CMIN -0.07 CAVG 0.01 CMAX 0.68 356: LSD 1.00 356: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.032 s ] 356: CMIN -0.35 CAVG 0.05 CMAX 3.40 356: LSD 5.00 356: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.020 s ] 356: CMIN -1.48 CAVG 0.20 CMAX 14.26 356: LSD 21.00 356: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.025 s ] 356: CMIN -1.74 CAVG 0.44 CMAX 32.50 356: LSD 27.95 356: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.023 s ] 356: CMIN -1.73 CAVG 0.34 CMAX 23.99 356: LSD 13.11 356: [2] xf_out->m_type = 9, xf_in->m_type = 0 356: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 356: bspline_xform_initialize 356: rdims = (2,2,2) 356: vox_per_rgn = (22,22,22) 356: cdims = (5 5 5) 356: ** Registration worker thread finished. 356: Writing transformation ... 356: Warping... 356: Running: plm_warp_native 356: Converting input image... 356: Converting xform... 356: bspline_xform_initialize 356: rdims = (2,2,2) 356: vox_per_rgn = (22,22,22) 356: cdims = (5 5 5) 356: Creating output vf... 356: Creating output volume... 356: Running native warper... 356: bspline_warp complete. 356: Back convert to original type... 356: > Convert vf to itk 356: > Conversion complete. 356: plm_warp_native is complete. 356: Saving image... 356: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile-img.nrrd 356: Saving vf... 356: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile-vf.nrrd 356: Plastimatch 1.9.4 356: Load: 0.0594451 356: Run: 0.193996 356: Save: 0.162523 356: Total: 0.415964 356: Finished! 356: 356: STDERR: 356: Not an error 290/578 Test #356: plm-bsp-logfile ....................... Passed 1.05 sec test 407 Start 407: plm-bsp-dcos-f-stats 407: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-f-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 407: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 407: Test timeout computed to be: 1500 404: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 404: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-img.nrrd 404: EXPECTED_ERRNO is 407: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 407: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-img.nrrd 407: EXPECTED_ERRNO is 376: RETVAL: 0 376: STDOUT: Min: -7.243 -7.243 -7.243 376: Mean: -0.004 -0.004 -0.004 376: Max: 7.465 7.465 7.465 376: Mean abs: 0.231 0.231 0.231 376: Ave len: 0.460 376: Jacobian: MINJAC 0.443734 MAXJAC 1.03502 376: Energy: MINDIL -0.712 MAXDIL 0.0370853 376: MAXSTRAIN 0.0397 TOTSTRAIN 73.6175 376: Second derivatives: MINSECDER 9.85e-12 MAXSECDER 0.0182 376: AVESECDER 0.00018 INTSECDER 2.24e+04 376: Max second derivative at: (20 20 16) 376: 376: STDERR: 376: Not an error 291/578 Test #376: plm-bsp-regularize-numeric-stats ...... Passed 0.60 sec test 410 Start 410: plm-reg-multi-a-stats 410: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-vf.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 410: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 410: Test timeout computed to be: 1500 370: RETVAL: 0 370: STDOUT: Min: -9.485 -9.485 -9.485 370: Mean: -0.004 -0.004 -0.004 370: Max: 9.819 9.819 9.819 370: Mean abs: 0.215 0.215 0.215 370: Ave len: 0.425 370: Jacobian: MINJAC 0.315393 MAXJAC 1.06557 370: Energy: MINDIL -0.958 MAXDIL 0.0701264 370: MAXSTRAIN 0.0879 TOTSTRAIN 112.949 370: Second derivatives: MINSECDER 0 MAXSECDER 0.0362 370: AVESECDER 0.000354 INTSECDER 4.42e+04 370: Max second derivative at: (20 20 16) 370: 370: STDERR: 383: RETVAL: 0 383: STDOUT: MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872 383: 383: STDERR: 366: RETVAL: 0 366: STDOUT: MIN -128.000000 AVE -127.132690 MAX 0.000000 NONZERO 54608 NUMVOX 54872 366: 366: STDERR: 370: Not an error 292/578 Test #370: plm-bsp-regularize-none-stats ......... Passed 0.69 sec test 413 Start 413: plm-reg-multi-b-stats 413: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 413: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 413: Test timeout computed to be: 1500 366: Not an error 293/578 Test #366: plm-bsp-char-output-stats ............. Passed 0.77 sec test 416 Start 416: plm-reg-dv-itk-translation-stats 416: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-dv-itk-translation-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 416: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 416: Test timeout computed to be: 1500 383: Not an error 294/578 Test #383: plm-bsp-landmark-c-stats .............. Passed 0.65 sec test 425 Start 425: plm-reg-process-a-stats 425: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-process-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 425: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 425: Test timeout computed to be: 1500 425: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 425: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.mha 425: EXPECTED_ERRNO is 410: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 410: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-vf.nrrd 410: EXPECTED_ERRNO is 413: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 413: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-img.nrrd 413: EXPECTED_ERRNO is 368: RETVAL: 0 368: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha 368: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha 368: Launching registration worker thread 368: Inside registration worker thread 368: Doing registration stage 368: [1] xf_in->m_type = 0, xf_out->m_type = 0 368: RESAMPLE 1 1: (2 2 2), (2 2 2) 368: RESAMPLE 1 1: (2 2 2), (2 2 2) 368: volume_calc_grad complete. 368: bspline_xform_initialize 368: Warning: vox_per_rgn was less than 4. 368: Warning: vox_per_rgn was less than 4. 368: Warning: vox_per_rgn was less than 4. 368: rdims = (5,5,5) 368: vox_per_rgn = (4,4,4) 368: cdims = (8 8 8) 368: Algorithm flavor = g 368: Threading = 0 368: >> Checking JH allocation 368: BSPLINE PARMS 368: max_its = 5 368: max_feval = 5 368: BSPLINE XFORM HEADER 368: vox_per_rgn = 4 4 4 368: roi_offset = 0 0 0 368: roi_dim = 19 19 19 368: img_dc = 1 0 0 0 1 0 0 0 1 368: BST METRICS 368: MET 110100 MSE 1.000000 368: Setting nmax, mmax = 1536 41 368: >>> START 368: This problem is unconstrained. 368: [ 0, 0] MSE 1339.481 NV 6859 GM 84.834 GN 23.1 [ 0.031 s ] 368: CMIN 0.00 CAVG 0.00 CMAX 0.00 368: LSD 0.00 368: [ 0, 1] MSE 1311.345 NV 6859 GM 83.820 GN 22.8 [ 0.023 s ] 368: CMIN -0.60 CAVG -0.00 CMAX 0.08 368: LSD 1.00 368: [ 0, 2] MSE 1202.580 NV 6859 GM 79.773 GN 21.8 [ 0.032 s ] 368: CMIN -2.99 CAVG -0.01 CMAX 0.42 368: LSD 5.00 368: [ 0, 3] MSE 827.300 NV 6859 GM 63.686 GN 17.5 [ 0.020 s ] 368: CMIN -12.56 CAVG -0.05 CMAX 1.74 368: LSD 21.00 368: [ 1, 4] MSE 213.043 NV 6859 GM -16.873 GN 5.84 [ 0.012 s ] 368: CMIN -54.37 CAVG -0.20 CMAX 6.52 368: LSD 67.10 368: [ 2, 5] MSE 175.936 NV 6859 GM -0.450 GN 2.34 [ 0.023 s ] 368: CMIN -51.91 CAVG -0.18 CMAX 5.91 368: LSD 13.48 368: [2] xf_out->m_type = 9, xf_in->m_type = 0 368: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 368: bspline_xform_initialize 368: rdims = (5,5,5) 368: vox_per_rgn = (8,8,8) 368: cdims = (8 8 8) 368: ** Registration worker thread finished. 368: Writing transformation ... 368: Warping... 368: Running: plm_warp_native 368: Converting input image... 368: Converting xform... 368: bspline_xform_initialize 368: rdims = (5,5,5) 368: vox_per_rgn = (8,8,8) 368: cdims = (8 8 8) 368: Creating output vf... 368: Creating output volume... 368: Running native warper... 368: bspline_warp complete. 368: Back convert to original type... 368: > Convert vf to itk 368: > Conversion complete. 368: plm_warp_native is complete. 368: Saving image... 368: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-img.mha 368: Saving vf... 368: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-vf.nrrd 368: Load: 0.061883 368: Run: 0.161633 368: Save: 0.09658 368: Total: 0.320096 368: Finished! 368: 368: STDERR: 368: Not an error 295/578 Test #368: plm-bsp-rect .......................... Passed 0.80 sec test 428 Start 428: plm-reg-trans-a-stats 428: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 428: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 428: Test timeout computed to be: 1500 416: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 416: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-img.nrrd 416: EXPECTED_ERRNO is 380: RETVAL: 0 380: STDOUT: MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872 380: 380: STDERR: 380: Not an error 386: RETVAL: 0 296/578 Test #380: plm-bsp-landmark-b-stats .............. Passed 0.75 sec test 431 Start 431: plm-reg-trans-b-stats 431: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 431: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 431: Test timeout computed to be: 1500 386: STDOUT: MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872 386: 386: STDERR: 386: Not an error 297/578 Test #386: plm-bsp-landmark-d-stats .............. Passed 0.68 sec test 434 Start 434: plm-reg-trans-mi-a-stats 434: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-mi-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 434: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 434: Test timeout computed to be: 1500 389: RETVAL: 0 389: STDOUT: MIN -1000.000183 AVE -991.396057 MAX 0.000000 NONZERO 54488 NUMVOX 54872 389: 389: STDERR: 389: Not an error 398: RETVAL: 0 398: STDOUT: MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872 398: 398: STDERR: 398: Not an error 298/578 Test #389: plm-bsp-landmark-e-stats .............. Passed 0.64 sec test 437 Start 437: plm-reg-autores-a-stats 437: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 437: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 437: Test timeout computed to be: 1500 299/578 Test #398: plm-bsp-dcos-c-stats .................. Passed 0.43 sec test 440 Start 440: plm-reg-autores-b-stats 440: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 440: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 440: Test timeout computed to be: 1500 428: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 428: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.mha 428: EXPECTED_ERRNO is 395: RETVAL: 0 395: STDOUT: MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872 395: 395: STDERR: 395: Not an error 300/578 Test #395: plm-bsp-dcos-b-stats .................. Passed 0.57 sec test 446 Start 446: plm-compose-a-stats 446: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 446: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 446: Test timeout computed to be: 1500 392: RETVAL: 0 392: STDOUT: MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872 392: 392: STDERR: 392: Not an error 301/578 Test #392: plm-bsp-dcos-a-stats .................. Passed 0.65 sec test 450 Start 450: plm-compose-b-stats 450: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 450: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 450: Test timeout computed to be: 1500 431: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 431: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.mha 431: EXPECTED_ERRNO is 434: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 434: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.mha 434: EXPECTED_ERRNO is 437: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 437: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.mha 437: EXPECTED_ERRNO is 440: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 440: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.mha 440: EXPECTED_ERRNO is 446: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 446: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha 446: EXPECTED_ERRNO is 401: RETVAL: 0 401: STDOUT: MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872 401: 401: STDERR: 401: Not an error 450: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 450: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha 450: EXPECTED_ERRNO is 302/578 Test #401: plm-bsp-dcos-d-stats .................. Passed 0.49 sec test 454 Start 454: plm-compose-c-stats 454: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 454: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 454: Test timeout computed to be: 1500 454: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 454: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha 454: EXPECTED_ERRNO is 407: RETVAL: 0 407: STDOUT: MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872 407: 407: STDERR: 407: Not an error 303/578 Test #407: plm-bsp-dcos-f-stats .................. Passed 0.53 sec test 457 Start 457: plm-resample-a-stats 457: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 457: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 457: Test timeout computed to be: 1500 404: RETVAL: 0 404: STDOUT: MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872 404: 404: STDERR: 404: Not an error 304/578 Test #404: plm-bsp-dcos-e-stats .................. Passed 0.58 sec test 460 Start 460: plm-resample-b-stats 460: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 460: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 460: Test timeout computed to be: 1500 457: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 457: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha 457: EXPECTED_ERRNO is 410: RETVAL: 0 410: STDOUT: Min: -20.189 -0.190 -0.190 410: Mean: -20.000 -0.000 -0.000 410: Max: -19.810 0.190 0.190 410: Mean abs: 20.000 0.000 0.000 410: Ave len: 20.000 410: Jacobian: MINJAC 0.978516 MAXJAC 1.02157 410: Energy: MINDIL -0.0216 MAXDIL 0.0215666 410: MAXSTRAIN 0.0221 TOTSTRAIN 0.0501571 410: Second derivatives: MINSECDER 0 MAXSECDER 0.00749 410: AVESECDER 1.12e-05 INTSECDER 1.4e+03 410: Max second derivative at: (18 20 16) 410: 410: STDERR: 410: Not an error 305/578 Test #410: plm-reg-multi-a-stats ................. Passed 0.51 sec test 463 Start 463: plm-resample-c-stats 463: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 463: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 463: Test timeout computed to be: 1500 460: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 460: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha 460: EXPECTED_ERRNO is 440: RETVAL: 0 440: STDOUT: MIN -999.769348 AVE -597.450806 MAX 0.000000 NONZERO 38880 NUMVOX 54872 440: 440: STDERR: 440: Not an error 434: RETVAL: 0 434: STDOUT: MIN -999.826416 AVE -612.681030 MAX 0.000000 NONZERO 39701 NUMVOX 54872 434: 434: STDERR: 434: Not an error 306/578 Test #440: plm-reg-autores-b-stats ............... Passed 0.31 sec test 466 Start 466: plm-scale-a-stats 466: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-scale-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 466: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 466: Test timeout computed to be: 1500 463: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 463: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha 463: EXPECTED_ERRNO is 307/578 Test #434: plm-reg-trans-mi-a-stats .............. Passed 0.36 sec test 469 Start 469: plm-scale-vf-a-stats 469: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-scale-vf-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 469: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 469: Test timeout computed to be: 1500 413: RETVAL: 0 413: STDOUT: MIN -1000.000183 AVE -985.762146 MAX 0.000000 NONZERO 54224 NUMVOX 54872 413: 413: STDERR: 413: Not an error 308/578 Test #413: plm-reg-multi-b-stats ................. Passed 0.50 sec test 471 Start 471: plm-sift-a 471: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-sift-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=sift;--output-ps-1;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-1.fcsv;--output-ps-2;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-2.fcsv;--output-match-1;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-1.fcsv;--output-match-2;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-2.fcsv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 471: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 471: Test timeout computed to be: 1500 416: RETVAL: 0 416: STDOUT: MIN -999.914246 AVE -467.031616 MAX 1000.000000 NONZERO 54872 NUMVOX 54872 416: 416: STDERR: 416: Not an error 309/578 Test #416: plm-reg-dv-itk-translation-stats ...... Passed 0.50 sec test 475 Start 475: plm-thumbnail-a-stats 475: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 475: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 475: Test timeout computed to be: 1500 466: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 466: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd 466: EXPECTED_ERRNO is 469: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 469: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd 469: EXPECTED_ERRNO is 471: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 471: PARMS is sift;--output-ps-1;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-1.fcsv;--output-ps-2;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-2.fcsv;--output-match-1;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-1.fcsv;--output-match-2;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-2.fcsv;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha 471: EXPECTED_ERRNO is 428: RETVAL: 0 428: STDOUT: MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872 428: 428: STDERR: 428: Not an error 310/578 Test #428: plm-reg-trans-a-stats ................. Passed 0.47 sec test 478 Start 478: plm-thumbnail-b-stats 478: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 478: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 478: Test timeout computed to be: 1500 475: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 475: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png 475: EXPECTED_ERRNO is 437: RETVAL: 0 437: STDOUT: MIN -999.770874 AVE -597.535889 MAX 0.000000 NONZERO 38880 NUMVOX 54872 437: 437: STDERR: 437: Not an error 311/578 Test #437: plm-reg-autores-a-stats ............... Passed 0.44 sec test 481 Start 481: plm-thumbnail-c-stats 481: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 481: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 481: Test timeout computed to be: 1500 478: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 478: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png 478: EXPECTED_ERRNO is 431: RETVAL: 0 431: STDOUT: MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872 431: 431: STDERR: 431: Not an error 312/578 Test #431: plm-reg-trans-b-stats ................. Passed 0.48 sec test 484 Start 484: plm-intersect-stats 484: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-intersect-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 484: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 484: Test timeout computed to be: 1500 450: RETVAL: 0 450: STDOUT: Min: 0.000 -1.573 -1.573 450: Mean: 13.794 -0.035 -0.034 450: Max: 20.615 1.329 1.329 450: Mean abs: 13.794 0.281 0.281 450: Ave len: 13.805 450: Jacobian: MINJAC -6.27693 MAXJAC 1.08247 450: Energy: MINDIL -6.41 MAXDIL 0.0798482 450: MAXSTRAIN 14.2 TOTSTRAIN 28436.8 450: Second derivatives: MINSECDER 0 MAXSECDER 165 450: AVESECDER 6.5 INTSECDER 8.13e+05 450: Max second derivative at: (30 18 18) 450: 450: STDERR: 450: Not an error 313/578 Test #450: plm-compose-b-stats ................... Passed 0.42 sec test 487 Start 487: plm-union-stats 487: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-union-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 487: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 487: Test timeout computed to be: 1500 481: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 481: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png 481: EXPECTED_ERRNO is 425: RETVAL: 0 425: STDOUT: MIN -500.000000 AVE -490.647552 MAX 0.000000 NONZERO 54871 NUMVOX 54872 425: 425: STDERR: 425: Not an error 314/578 Test #425: plm-reg-process-a-stats ............... Passed 0.60 sec test 490 Start 490: plm-threshold-a-stats 490: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 490: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 490: Test timeout computed to be: 1500 484: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 484: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha 484: EXPECTED_ERRNO is 487: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 487: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha 487: EXPECTED_ERRNO is 490: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 490: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha 490: EXPECTED_ERRNO is 457: RETVAL: 0 457: STDOUT: MIN -999.857544 AVE -878.686035 MAX -12.873093 NONZERO 6859 NUMVOX 6859 457: 457: STDERR: 457: Not an error 315/578 Test #457: plm-resample-a-stats .................. Passed 0.32 sec test 493 Start 493: plm-threshold-b-stats 493: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-b-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 493: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 493: Test timeout computed to be: 1500 454: RETVAL: 0 454: STDOUT: Min: 0.000 -2.171 -2.171 454: Mean: 12.523 -0.008 -0.008 454: Max: 21.615 1.811 1.811 454: Mean abs: 12.523 0.418 0.418 454: Ave len: 12.552 454: Jacobian: MINJAC -6.97561 MAXJAC 1.2529 454: Energy: MINDIL -6.7 MAXDIL 0.315048 454: MAXSTRAIN 47 TOTSTRAIN 30590.5 454: Second derivatives: MINSECDER 0 MAXSECDER 1.27e+03 454: AVESECDER 7.37 INTSECDER 9.21e+05 454: Max second derivative at: (30 20 27) 454: 454: STDERR: 454: Not an error 316/578 Test #454: plm-compose-c-stats ................... Passed 0.48 sec test 496 Start 496: plm-threshold-c-stats 496: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 496: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 496: Test timeout computed to be: 1500 493: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 493: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha 493: EXPECTED_ERRNO is 496: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 496: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha 496: EXPECTED_ERRNO is 446: RETVAL: 0 446: STDOUT: Min: 0.000 -1.573 -1.573 446: Mean: 13.794 -0.035 -0.034 446: Max: 20.615 1.329 1.329 446: Mean abs: 13.794 0.281 0.281 446: Ave len: 13.805 446: Jacobian: MINJAC -6.27693 MAXJAC 1.08247 446: Energy: MINDIL -6.41 MAXDIL 0.0798482 446: MAXSTRAIN 14.2 TOTSTRAIN 28436.8 446: Second derivatives: MINSECDER 0 MAXSECDER 165 446: AVESECDER 6.5 INTSECDER 8.13e+05 446: Max second derivative at: (30 18 18) 446: 446: STDERR: 446: Not an error 317/578 Test #446: plm-compose-a-stats ................... Passed 0.63 sec test 502 Start 502: plm-warp-a-stats 502: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 502: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 502: Test timeout computed to be: 1500 460: RETVAL: 0 460: STDOUT: MIN -999.915161 AVE -878.621277 MAX -0.000005 NONZERO 64000 NUMVOX 64000 460: 460: STDERR: 460: Not an error 318/578 Test #460: plm-resample-b-stats .................. Passed 0.42 sec test 505 Start 505: plm-warp-b-stats-1 505: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-b-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 505: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 505: Test timeout computed to be: 1500 502: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 502: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha 502: EXPECTED_ERRNO is 505: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 505: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha 505: EXPECTED_ERRNO is 463: RETVAL: 0 463: STDOUT: Min: 1.219 -2.075 -2.075 463: Mean: 6.707 -0.405 -0.405 463: Max: 13.751 1.148 1.148 463: Mean abs: 6.707 0.706 0.706 463: Ave len: 6.825 463: Jacobian: MINJAC 0.718591 MAXJAC 1.16208 463: Energy: MINDIL -0.304 MAXDIL 0.195159 463: MAXSTRAIN 0.277 TOTSTRAIN -132.025 463: Second derivatives: MINSECDER 0.000246 MAXSECDER 0.00708 463: AVESECDER 0.00129 INTSECDER 161 463: Max second derivative at: (16 16 16) 463: 463: STDERR: 463: Not an error 319/578 Test #463: plm-resample-c-stats .................. Passed 0.44 sec test 507 Start 507: plm-warp-b-stats-2 507: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-b-stats-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 507: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 507: Test timeout computed to be: 1500 466: RETVAL: 0 466: STDOUT: MIN -400.000000 AVE -3.732322 MAX 0.000000 NONZERO 512 NUMVOX 54872 466: 466: STDERR: 466: Not an error 320/578 Test #466: plm-scale-a-stats ..................... Passed 0.44 sec test 510 Start 510: plm-warp-c-stats 510: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-c-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 510: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 510: Test timeout computed to be: 1500 481: RETVAL: 0 481: STDOUT: MIN 0.000000 AVE 8.203125 MAX 119.000000 NONZERO 32 NUMVOX 256 481: 481: STDERR: 481: Not an error 507: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 507: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha 507: EXPECTED_ERRNO is 487: RETVAL: 0 487: STDOUT: MIN 0.000000 AVE 0.023163 MAX 1.000000 NONZERO 1271 NUMVOX 54872 487: 487: STDERR: 487: Not an error 321/578 Test #481: plm-thumbnail-c-stats ................. Passed 0.35 sec test 513 Start 513: plm-warp-d-stats 513: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 513: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 513: Test timeout computed to be: 1500 322/578 Test #487: plm-union-stats ....................... Passed 0.34 sec test 516 Start 516: plm-warp-f-stats-1 516: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-f-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-warp-f-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 516: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 516: Test timeout computed to be: 1500 510: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 510: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha 510: EXPECTED_ERRNO is 513: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 513: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha 513: EXPECTED_ERRNO is 478: RETVAL: 0 478: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 256 478: 478: STDERR: 478: Not an error 323/578 Test #478: plm-thumbnail-b-stats ................. Passed 0.42 sec test 519 Start 519: plm-warp-g-stats-1 519: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-g-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 519: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 519: Test timeout computed to be: 1500 490: RETVAL: 0 490: STDOUT: MIN 0.000000 AVE 0.306732 MAX 1.000000 NONZERO 16831 NUMVOX 54872 490: 490: STDERR: 490: Not an error 324/578 Test #490: plm-threshold-a-stats ................. Passed 0.35 sec test 522 Start 522: plm-warp-h-stats-1 522: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-h-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;plm-warp-h-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 522: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 522: Test timeout computed to be: 1500 516: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 516: PARMS is header;plm-warp-f-img.nrrd 516: EXPECTED_ERRNO is 519: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 519: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd 519: EXPECTED_ERRNO is 522: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 522: PARMS is stats;plm-warp-h-img.nrrd 522: EXPECTED_ERRNO is 475: RETVAL: 0 475: STDOUT: MIN 0.000000 AVE 76.906250 MAX 255.000000 NONZERO 88 NUMVOX 256 475: 475: STDERR: 475: Not an error 484: RETVAL: 0 484: STDOUT: MIN 0.000000 AVE 0.013285 MAX 1.000000 NONZERO 729 NUMVOX 54872 484: 484: STDERR: 484: Not an error 325/578 Test #475: plm-thumbnail-a-stats ................. Passed 0.57 sec test 525 Start 525: plm-warp-i-stats-1 525: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-i-stats-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;plm-warp-i-img.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 525: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 525: Test timeout computed to be: 1500 326/578 Test #484: plm-intersect-stats ................... Passed 0.50 sec test 528 Start 528: plm-xf-convert-b 528: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output-type;bspline;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125;--grid-spacing;10 10 10" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 528: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 528: Test timeout computed to be: 1500 469: RETVAL: 0 469: STDOUT: Min: 4.000 0.000 0.000 469: Mean: 4.000 0.000 0.000 469: Max: 4.000 0.000 0.000 469: Mean abs: 4.000 0.000 0.000 469: Ave len: 4.000 469: Jacobian: MINJAC 1 MAXJAC 1 469: Energy: MINDIL 0 MAXDIL 0 469: MAXSTRAIN 0 TOTSTRAIN 0 469: Second derivatives: MINSECDER 0 MAXSECDER 0 469: AVESECDER 0 INTSECDER 0 469: Max second derivative at: (1 1 1) 469: 469: STDERR: 469: Not an error 327/578 Test #469: plm-scale-vf-a-stats .................. Passed 0.65 sec test 532 Start 532: plm-xf-convert-d-warp-1-stats 532: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-1-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 532: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 532: Test timeout computed to be: 1500 525: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 525: PARMS is stats;plm-warp-i-img.nrrd 525: EXPECTED_ERRNO is 528: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 528: PARMS is xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output-type;bspline;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125;--grid-spacing;10 10 10 528: EXPECTED_ERRNO is 532: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 532: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd 532: EXPECTED_ERRNO is 496: RETVAL: 0 496: STDOUT: MIN 0.000000 AVE 0.021978 MAX 1.000000 NONZERO 1206 NUMVOX 54872 496: 496: STDERR: 496: Not an error 328/578 Test #496: plm-threshold-c-stats ................. Passed 0.48 sec test 535 Start 535: plm-xf-convert-d-warp-2-stats 535: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-2-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 535: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 535: Test timeout computed to be: 1500 493: RETVAL: 0 493: STDOUT: MIN 0.000000 AVE 0.671290 MAX 1.000000 NONZERO 36835 NUMVOX 54872 493: 493: STDERR: 493: Not an error 329/578 Test #493: plm-threshold-b-stats ................. Passed 0.52 sec test 541 Start 541: plm-xf-convert-h-stats 541: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-h-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 541: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 541: Test timeout computed to be: 1500 535: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 535: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd 535: EXPECTED_ERRNO is 541: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 541: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd 541: EXPECTED_ERRNO is 519: RETVAL: 0 519: STDOUT: MIN -1000.000000 AVE -763.820862 MAX 0.000000 NONZERO 42085 NUMVOX 54872 519: 519: STDERR: 519: Not an error 505: RETVAL: 0 505: STDOUT: Min: 0.875 -1.519 -1.519 505: Mean: 5.773 0.002 0.002 505: Max: 12.239 1.255 1.255 505: Mean abs: 5.773 0.518 0.518 505: Ave len: 5.853 505: Jacobian: MINJAC 0.815198 MAXJAC 1.18104 505: Energy: MINDIL -0.184 MAXDIL 0.216011 505: MAXSTRAIN 0.267 TOTSTRAIN 1114.81 505: Second derivatives: MINSECDER 0.00025 MAXSECDER 0.00723 505: AVESECDER 0.00122 INTSECDER 152 505: Max second derivative at: (15 15 15) 505: 505: STDERR: 505: Not an error 330/578 Test #519: plm-warp-g-stats-1 .................... Passed 0.31 sec test 544 Start 544: plm-xf-convert-i-stats 544: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-i-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-vf.nrrd" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 544: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 544: Test timeout computed to be: 1500 507: RETVAL: 0 507: STDOUT: MIN -999.876892 AVE -775.668274 MAX 0.000000 NONZERO 49099 NUMVOX 54872 507: 507: STDERR: 507: Not an error 331/578 Test #505: plm-warp-b-stats-1 .................... Passed 0.49 sec test 547 Start 547: xf-invert-vf-zero-1-stats 547: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-zero-1-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 547: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 547: Test timeout computed to be: 1500 332/578 Test #507: plm-warp-b-stats-2 .................... Passed 0.44 sec test 550 Start 550: xf-invert-vf-trans-1-stats 550: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-trans-1-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 550: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 550: Test timeout computed to be: 1500 544: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 544: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-vf.nrrd 544: EXPECTED_ERRNO is 513: RETVAL: 0 513: STDOUT: MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872 513: 513: STDERR: 513: Not an error 333/578 Test #513: plm-warp-d-stats ...................... Passed 0.42 sec test 552 Start 552: xf-invert-vrs-a 552: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vrs-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 552: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 552: Test timeout computed to be: 1500 510: RETVAL: 0 510: STDOUT: MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872 510: 510: STDERR: 510: Not an error 547: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 547: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha 547: EXPECTED_ERRNO is 334/578 Test #510: plm-warp-c-stats ...................... Passed 0.46 sec test 554 Start 554: xf-invert-vrs-b 554: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vrs-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-b.tfm;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 554: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 554: Test timeout computed to be: 1500 516: RETVAL: 0 516: STDOUT: Type = float 516: Planes = 1 516: Origin = -147.5140 -381.8964 -136.9799 516: Size = 38 38 38 516: Spacing = 13.1579 13.1579 13.1579 516: Direction = 0.9254 0.0180 -0.3785 0.1632 0.8826 0.4410 0.3420 -0.4698 0.8138 516: 516: STDERR: 516: Not an error 550: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 550: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha 550: EXPECTED_ERRNO is 335/578 Test #516: plm-warp-f-stats-1 .................... Passed 0.45 sec test 557 Start 557: proton-dose-1-stats 557: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-1-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 557: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 557: Test timeout computed to be: 1500 552: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 552: PARMS is xf-invert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm 552: EXPECTED_ERRNO is 554: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 554: PARMS is xf-invert;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-b.tfm;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm 554: EXPECTED_ERRNO is 502: RETVAL: 0 502: STDOUT: Min: 0.875 -1.519 -1.519 502: Mean: 5.773 0.002 0.002 502: Max: 12.239 1.255 1.255 502: Mean abs: 5.773 0.518 0.518 502: Ave len: 5.853 502: Jacobian: MINJAC 0.815198 MAXJAC 1.18104 502: Energy: MINDIL -0.184 MAXDIL 0.216011 502: MAXSTRAIN 0.267 TOTSTRAIN 1114.81 502: Second derivatives: MINSECDER 0.00025 MAXSECDER 0.00723 502: AVESECDER 0.00122 INTSECDER 152 502: Max second derivative at: (15 15 15) 502: 502: STDERR: 502: Not an error 336/578 Test #502: plm-warp-a-stats ...................... Passed 0.67 sec test 560 Start 560: proton-dose-4a-stats 560: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 560: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 560: Test timeout computed to be: 1500 557: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 557: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha 557: EXPECTED_ERRNO is 560: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 560: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha 560: EXPECTED_ERRNO is 528: RETVAL: 0 528: STDOUT: about to xform_convert 528: bspline_xform_initialize 528: Warning: vox_per_rgn was less than 4. 528: Warning: vox_per_rgn was less than 4. 528: Warning: vox_per_rgn was less than 4. 528: rdims = (1,1,1) 528: vox_per_rgn = (4,4,4) 528: cdims = (4 4 4) 528: did xform_convert 528: 528: STDERR: 528: Not an error 337/578 Test #528: plm-xf-convert-b ...................... Passed 0.45 sec test 566 Start 566: proton-dose-5a-stats 566: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-5a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 566: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 566: Test timeout computed to be: 1500 522: RETVAL: 0 522: STDOUT: MIN 0.000000 AVE 113.750511 MAX 996.000000 NONZERO 42867 NUMVOX 54872 522: 522: STDERR: 522: Not an error 541: RETVAL: 0 541: STDOUT: Min: 20.000 0.000 0.000 541: Mean: 20.000 0.000 0.000 541: Max: 20.000 0.000 0.000 541: Mean abs: 20.000 0.000 0.000 541: Ave len: 20.000 541: Jacobian: MINJAC 1 MAXJAC 1 541: Energy: MINDIL 0 MAXDIL 0 541: MAXSTRAIN 0 TOTSTRAIN 0 541: Second derivatives: MINSECDER 0 MAXSECDER 0 541: AVESECDER 0 INTSECDER 0 541: Max second derivative at: (1 1 1) 541: 541: STDERR: 338/578 Test #522: plm-warp-h-stats-1 .................... Passed 0.60 sec test 569 Start 569: proton-dose-5d-stats 569: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-5d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 569: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 569: Test timeout computed to be: 1500 541: Not an error 339/578 Test #541: plm-xf-convert-h-stats ................ Passed 0.36 sec test 572 Start 572: proton-dose-6a-stats 572: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-6a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 572: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 572: Test timeout computed to be: 1500 566: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 566: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.mha 566: EXPECTED_ERRNO is 569: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 569: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.mha 569: EXPECTED_ERRNO is 532: RETVAL: 0 532: STDOUT: MIN -999.979248 AVE -745.231567 MAX 0.000000 NONZERO 5851 NUMVOX 6859 532: 532: STDERR: 532: Not an error 340/578 Test #532: plm-xf-convert-d-warp-1-stats ......... Passed 0.51 sec test 574 Start 574: proton-dose-8d 574: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-8d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 574: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 574: Test timeout computed to be: 1500 572: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 572: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha 572: EXPECTED_ERRNO is 574: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 574: PARMS is dose;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.txt 574: EXPECTED_ERRNO is 535: RETVAL: 0 535: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 535: 535: STDERR: 535: Not an error 341/578 Test #535: plm-xf-convert-d-warp-2-stats ......... Passed 0.51 sec test 576 Start 576: wed-a 576: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=wed-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=wed;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 576: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 576: Test timeout computed to be: 1500 576: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 576: PARMS is wed;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a.txt 576: EXPECTED_ERRNO is 554: RETVAL: 0 554: STDOUT: 554: STDERR: 554: Not an error 342/578 Test #554: xf-invert-vrs-b ....................... Passed 0.43 sec test 16 Start 16: gauss-7 16: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-7" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-7.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;20 20 20" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 16: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 16: Test timeout computed to be: 1500 550: RETVAL: 0 550: STDOUT: Min: -10.000 0.000 0.000 550: Mean: -9.999 0.000 0.000 550: Max: -9.963 0.000 0.000 550: Mean abs: 9.999 0.000 0.000 550: Ave len: 9.999 550: Jacobian: MINJAC 0.998589 MAXJAC 1 550: Energy: MINDIL -0.00141 MAXDIL 3.62396e-08 550: MAXSTRAIN 3.62e-08 TOTSTRAIN -2.78625 550: Second derivatives: MINSECDER 0 MAXSECDER 2.19e-06 550: AVESECDER 5.23e-08 INTSECDER 6.54 550: Max second derivative at: (2 1 1) 550: 550: STDERR: 550: Not an error 343/578 Test #550: xf-invert-vf-trans-1-stats ............ Passed 0.49 sec test 23 Start 23: gw-lung-a 23: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gw-lung-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-a.mha;--pattern;lung;--lung-tumor-pos;-5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 23: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 23: Test timeout computed to be: 1500 16: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 16: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-7.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;20 20 20 16: EXPECTED_ERRNO is 525: RETVAL: 0 525: STDOUT: MIN 0.000000 AVE 114.545189 MAX 996.552368 NONZERO 43320 NUMVOX 54872 525: 525: STDERR: 525: Not an error 344/578 Test #525: plm-warp-i-stats-1 .................... Passed 0.76 sec test 24 Start 24: gw-lung-b 24: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gw-lung-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-b.mha;--pattern;lung;--lung-tumor-pos;0" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 24: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 24: Test timeout computed to be: 1500 547: RETVAL: 0 547: STDOUT: Min: 0.000 0.000 0.000 547: Mean: 0.000 0.000 0.000 547: Max: 0.000 0.000 0.000 547: Mean abs: 0.000 0.000 0.000 547: Ave len: 0.000 547: Jacobian: MINJAC 1 MAXJAC 1 547: Energy: MINDIL 0 MAXDIL 0 547: MAXSTRAIN 0 TOTSTRAIN 0 547: Second derivatives: MINSECDER 0 MAXSECDER 0 547: AVESECDER 0 INTSECDER 0 547: Max second derivative at: (1 1 1) 547: 547: STDERR: 547: Not an error 23: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 23: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-a.mha;--pattern;lung;--lung-tumor-pos;-5 23: EXPECTED_ERRNO is 552: RETVAL: 0 552: STDOUT: 552: STDERR: 345/578 Test #547: xf-invert-vf-zero-1-stats ............. Passed 0.56 sec test 25 Start 25: gw-lung-c 25: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gw-lung-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-c.mha;--pattern;lung;--lung-tumor-pos;5" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 25: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 25: Test timeout computed to be: 1500 552: Not an error 346/578 Test #552: xf-invert-vrs-a ....................... Passed 0.53 sec test 26 Start 26: pat-1 26: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=pat-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--pattern;rect;--dim;30 30 30;--background;-1000;--foreground;0;--rect-size;20 20 20;--origin;-150 -150 -150;--spacing;10 10 10;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/pat-1-dicom;--filenames-without-uids;--patient-id;PATIENT-ID;--patient-name;NAME^PATIENT;--series-description;Series Description Here" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 26: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 26: Test timeout computed to be: 1500 24: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 24: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-b.mha;--pattern;lung;--lung-tumor-pos;0 24: EXPECTED_ERRNO is 26: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 26: PARMS is synth;--pattern;rect;--dim;30 30 30;--background;-1000;--foreground;0;--rect-size;20 20 20;--origin;-150 -150 -150;--spacing;10 10 10;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/pat-1-dicom;--filenames-without-uids;--patient-id;PATIENT-ID;--patient-name;NAME^PATIENT;--series-description;Series Description Here 26: EXPECTED_ERRNO is 25: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 25: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-c.mha;--pattern;lung;--lung-tumor-pos;5 25: EXPECTED_ERRNO is 557: RETVAL: 0 557: STDOUT: MIN 0.000000 AVE 0.143515 MAX 70.000000 NONZERO 775 NUMVOX 216000 557: 557: STDERR: 557: Not an error 347/578 Test #557: proton-dose-1-stats ................... Passed 0.54 sec test 35 Start 35: rect-6 35: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-6" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-6.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;0 -300 -200;--direction-cosines;rotated-2" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 35: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 35: Test timeout computed to be: 1500 544: RETVAL: 0 544: STDOUT: Min: 7.161 -0.245 -0.245 544: Mean: 8.546 0.041 0.041 544: Max: 9.698 0.313 0.313 544: Mean abs: 8.546 0.144 0.144 544: Ave len: 8.549 544: Jacobian: MINJAC 0.996419 MAXJAC 1.00089 544: Energy: MINDIL -0.00359 MAXDIL 0.00089729 544: MAXSTRAIN 0.000899 TOTSTRAIN -0.0111365 544: Second derivatives: MINSECDER 6.15e-05 MAXSECDER 8.87e-05 544: AVESECDER 9.37e-06 INTSECDER 1.17e+03 544: Max second derivative at: (1 1 1) 544: 544: STDERR: 544: Not an error 348/578 Test #544: plm-xf-convert-i-stats ................ Passed 0.68 sec test 36 Start 36: rect-7 36: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-7" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-7.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;100 300 -100;--direction-cosines;rotated-3" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 36: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 36: Test timeout computed to be: 1500 569: RETVAL: 0 569: STDOUT: MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000 569: 569: STDERR: 569: Not an error 349/578 Test #569: proton-dose-5d-stats .................. Passed 0.42 sec test 41 Start 41: rect-10-roi-2 41: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-10-roi-2" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-2.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-220 60 -60 60 -60 60" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 41: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 41: Test timeout computed to be: 1500 35: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 35: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-6.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;0 -300 -200;--direction-cosines;rotated-2 35: EXPECTED_ERRNO is 36: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 36: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-7.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;100 300 -100;--direction-cosines;rotated-3 36: EXPECTED_ERRNO is 41: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 41: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-2.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-220 60 -60 60 -60 60 41: EXPECTED_ERRNO is 566: RETVAL: 0 566: STDOUT: MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000 566: 566: STDERR: 566: Not an error 350/578 Test #566: proton-dose-5a-stats .................. Passed 0.50 sec test 50 Start 50: rect-18 50: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-18" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-18.mha;--pattern;rect;--dim;15 15 15;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;20 20 20" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 50: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 50: Test timeout computed to be: 1500 50: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 50: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-18.mha;--pattern;rect;--dim;15 15 15;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;20 20 20 50: EXPECTED_ERRNO is 572: RETVAL: 0 572: STDOUT: MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000 572: 572: STDERR: 572: Not an error 351/578 Test #572: proton-dose-6a-stats .................. Passed 0.51 sec test 60 Start 60: rgc-1 60: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rgc-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rgc-1.mha;--output-type;float;--pattern;rect;--dim;10 10 1;--background;0;--foreground;30;--rect-size;0 10 0 5 0 0;--origin;0 0 0;--spacing;1 1 1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 60: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 60: Test timeout computed to be: 1500 560: RETVAL: 0 560: STDOUT: MIN 0.000000 AVE 0.266114 MAX 100.000000 NONZERO 932 NUMVOX 216000 560: 560: STDERR: 560: Not an error 352/578 Test #560: proton-dose-4a-stats .................. Passed 0.64 sec test 69 Start 69: xramp-1 69: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xramp-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xramp-1.mha;--output-type;float;--pattern;xramp;--dim;38 38 38" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 69: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 69: Test timeout computed to be: 1500 60: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 60: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rgc-1.mha;--output-type;float;--pattern;rect;--dim;10 10 1;--background;0;--foreground;30;--rect-size;0 10 0 5 0 0;--origin;0 0 0;--spacing;1 1 1 60: EXPECTED_ERRNO is 69: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 69: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xramp-1.mha;--output-type;float;--pattern;xramp;--dim;38 38 38 69: EXPECTED_ERRNO is 25: RETVAL: 0 25: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-c.mha 25: 25: STDERR: 25: Not an error 353/578 Test #25: gw-lung-c ............................. Passed 0.39 sec test 70 Start 70: yramp-1 70: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=yramp-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/yramp-1.mha;--output-type;float;--pattern;yramp;--dim;38 38 38" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 70: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 70: Test timeout computed to be: 1500 23: RETVAL: 0 23: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-a.mha 23: 23: STDERR: 23: Not an error 24: RETVAL: 0 24: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-b.mha 24: 24: STDERR: 24: Not an error 354/578 Test #23: gw-lung-a ............................. Passed 0.46 sec test 71 Start 71: zramp-1 71: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=zramp-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/zramp-1.mha;--output-type;float;--pattern;zramp;--dim;38 38 38" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 71: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 71: Test timeout computed to be: 1500 355/578 Test #24: gw-lung-b ............................. Passed 0.45 sec test 76 Start 76: vf-gaussian-1 76: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-gaussian-1" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-gaussian-1.mha;--xf-gauss;--gauss-center;0 0 0;--gauss-mag;10 20 0;--gauss-std;100 100 100;--dim;38 38 38" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 76: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 76: Test timeout computed to be: 1500 70: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 70: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/yramp-1.mha;--output-type;float;--pattern;yramp;--dim;38 38 38 70: EXPECTED_ERRNO is 71: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 71: PARMS is synth;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/zramp-1.mha;--output-type;float;--pattern;zramp;--dim;38 38 38 71: EXPECTED_ERRNO is 76: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 76: PARMS is synth-vf;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-gaussian-1.mha;--xf-gauss;--gauss-center;0 0 0;--gauss-mag;10 20 0;--gauss-std;100 100 100;--dim;38 38 38 76: EXPECTED_ERRNO is 36: RETVAL: 0 36: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-7.mha 36: 36: STDERR: 36: Not an error 356/578 Test #36: rect-7 ................................ Passed 0.40 sec test 78 Start 78: vf-zero-check 78: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero-stats.stdout.txt" "-DREGEX=Mean abs: *([-0-9.]*)" "-DLOWER_THRESH=0.000" "-DUPPER_THRESH=0.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 78: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 78: Test timeout computed to be: 1500 16: RETVAL: 0 16: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-7.mha 16: 16: STDERR: 16: Not an error 357/578 Test #16: gauss-7 ............................... Passed 0.59 sec test 80 Start 80: vf-trans-1-check 80: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=10.000" "-DUPPER_THRESH=10.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 80: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 80: Test timeout computed to be: 1500 78: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero-stats.stdout.txt 78: -- REGEX is Mean abs: *([-0-9.]*) 78: -- LOWER_THRESH is 0.000 78: -- UPPER_THRESH is 0.000 78: -- PARSED VALUE=|Mean abs: 0.000 0.000 0.000| 78: -- PARSED_VALUE=|0.000| 78: Not an error 80: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1-stats.stdout.txt 80: -- REGEX is Mean: *([-0-9.]*) 80: -- LOWER_THRESH is 10.000 80: -- UPPER_THRESH is 10.000 80: -- PARSED VALUE=|Mean: 10.000 0.000 0.000| 80: -- PARSED_VALUE=|10.000| 80: Not an error 358/578 Test #78: vf-zero-check ......................... Passed 0.07 sec test 82 Start 82: vf-trans-2-check 82: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2-stats.stdout.txt" "-DREGEX=Mean: *[-0-9.]* *([-0-9.]*)" "-DLOWER_THRESH=10.000" "-DUPPER_THRESH=10.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 82: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 82: Test timeout computed to be: 1500 50: RETVAL: 0 50: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-18.mha 50: 50: STDERR: 359/578 Test #80: vf-trans-1-check ...................... Passed 0.07 sec test 84 Start 84: vf-radial-1-check 84: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1-stats.stdout.txt" "-DREGEX=Mean abs: *([-0-9.]*)" "-DLOWER_THRESH=5.15" "-DUPPER_THRESH=5.16" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 84: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 84: Test timeout computed to be: 1500 50: Not an error 41: RETVAL: 0 41: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-2.mha 41: 41: STDERR: 41: Not an error 69: RETVAL: 0 69: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xramp-1.mha 69: 69: STDERR: 69: Not an error 360/578 Test #41: rect-10-roi-2 ......................... Passed 0.50 sec test 86 Start 86: plm-compare-a-check 86: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-a.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=7.76" "-DUPPER_THRESH=7.78" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 86: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 86: Test timeout computed to be: 1500 361/578 Test #50: rect-18 ............................... Passed 0.46 sec test 88 Start 88: plm-compare-b-check 88: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-b.stdout.txt" "-DREGEX=Ave len: *([-0-9.]*)" "-DLOWER_THRESH=14.141" "-DUPPER_THRESH=14.143" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 88: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 88: Test timeout computed to be: 1500 362/578 Test #69: xramp-1 ............................... Passed 0.42 sec test 90 Start 90: plm-compare-c-check 90: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-c.stdout.txt" "-DREGEX=Ave len: *([-0-9.]*)" "-DLOWER_THRESH=14.141" "-DUPPER_THRESH=14.143" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 90: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 90: Test timeout computed to be: 1500 82: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2-stats.stdout.txt 82: -- REGEX is Mean: *[-0-9.]* *([-0-9.]*) 82: -- LOWER_THRESH is 10.000 82: -- UPPER_THRESH is 10.000 82: -- PARSED VALUE=|Mean: 0.000 10.000 0.000| 82: -- PARSED_VALUE=|10.000| 82: Not an error 363/578 Test #82: vf-trans-2-check ...................... Passed 0.10 sec test 93 Start 93: plm-diff-a-check 93: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=7.76" "-DUPPER_THRESH=7.78" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 93: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 93: Test timeout computed to be: 1500 60: RETVAL: 0 60: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rgc-1.mha 60: 60: STDERR: 60: Not an error 364/578 Test #60: rgc-1 ................................. Passed 0.46 sec test 96 Start 96: plm-diff-b-check 96: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-stats.stdout.txt" "-DREGEX=Ave len: *([-0-9.]*)" "-DLOWER_THRESH=14.141" "-DUPPER_THRESH=14.143" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 96: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 96: Test timeout computed to be: 1500 84: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1-stats.stdout.txt 84: -- REGEX is Mean abs: *([-0-9.]*) 84: -- LOWER_THRESH is 5.15 84: -- UPPER_THRESH is 5.16 84: -- PARSED VALUE=|Mean abs: 5.157 5.157 5.157| 84: -- PARSED_VALUE=|5.157| 84: Not an error 365/578 Test #84: vf-radial-1-check ..................... Passed 0.11 sec test 98 Start 98: demons-a-check 98: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/demons-a.stdout.txt" "-DREGEX=^Mean: *([0-9.]*)" "-DLOWER_THRESH=3.4" "-DUPPER_THRESH=3.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 98: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 98: Test timeout computed to be: 1500 35: RETVAL: 0 35: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-6.mha 35: 35: STDERR: 35: Not an error 366/578 Test #35: rect-6 ................................ Passed 0.65 sec test 101 Start 101: drr-a-check 101: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=0.045" "-DUPPER_THRESH=0.055" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 101: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 101: Test timeout computed to be: 1500 574: RETVAL: 0 574: STDOUT: 574: [PLAN] 574: patient : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha 574: target : 574: dose_out : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha 574: debug : 0 574: dose norm : 100 574: 574: [SETTINGS] 574: flavor: d ** 574: homo_approx: n ** 574: ray_step: 1 ** 574: aperture_out: ** 574: proj_dose_out: ** 574: proj_img_out: ** 574: range_comp_out: ** 574: sigma_out: ** 574: wed_out: ** 574: beam_weight: 1 ** 574: 574: [GEOMETRY & APERTURE] 574: source: 0 -2000 0 ** 574: isocenter: 0 0 0 ** 574: vup: 0 0 1 ** 574: offset: 1500 ** 574: ap_center in pixels: 20 20 ** 574: i_res: 41 41 ** 574: spacing: 3.75 3.75 ** 574: source_size: 0 ** 574: ap_file_in: ** 574: rc_file_in: ** 574: smearing: 5 ** 574: 574: [PEAK] 574: E0: P0 574: spread: P0 574: weight: P0 574: 574: Start dose calculation Beam 1 574: Plan_calc::compute_beam_dose(beam) entry -- 574: Setting RVRTS = 1 574: FPD = 347.500001, BPD = 649.116731 574: 41 41 302 574: Setting RVRTS = 1 574: FPD = 347.500001, BPD = 649.116731 574: 41 41 302 574: FPD = 347.500001, BPD = 649.116731 574: 41 41 302 574: Setting RVRTS = 1 574: FPD = 347.500001, BPD = 649.116731 574: 41 41 302 574: Priority 1. Beamlet map file detected: Any manual peaks set, depth prescription, target or range compensator will not be considered. 574: Dose is null in the entire volume. Please check your input conditions. 574: 1 x 100%. 574: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm 574: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha 574: Sigma: 0.000000 seconds 574: Calc: 0.192929 seconds 574: IO: 0.137075 seconds 574: Reformat: 0.038194 seconds 574: Misc: 0.013162 seconds 574: done. 574: 574: Total execution time : 0.381695 seconds. 574: 574: STDERR: 574: Not an error 367/578 Test #574: proton-dose-8d ........................ Passed 0.97 sec test 104 Start 104: drr-b-check 104: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-b-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=0.045" "-DUPPER_THRESH=0.055" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 104: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 104: Test timeout computed to be: 1500 86: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-a.stdout.txt 86: -- REGEX is AVE *([-0-9.]*) 86: -- LOWER_THRESH is 7.76 86: -- UPPER_THRESH is 7.78 86: -- PARSED VALUE=|MIN -558.201904 AVE 7.769665 MAX 558.680786| 86: -- PARSED_VALUE=|7.769665| 86: Not an error 368/578 Test #86: plm-compare-a-check ................... Passed 0.11 sec test 107 Start 107: drr-c-check 107: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-c-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=0.045" "-DUPPER_THRESH=0.055" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 107: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 107: Test timeout computed to be: 1500 88: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-b.stdout.txt 88: -- REGEX is Ave len: *([-0-9.]*) 88: -- LOWER_THRESH is 14.141 88: -- UPPER_THRESH is 14.143 88: -- PARSED VALUE=|Ave len: 14.142| 88: -- PARSED_VALUE=|14.142| 88: Not an error 369/578 Test #88: plm-compare-b-check ................... Passed 0.11 sec test 110 Start 110: fdk-cpu-a-check 110: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=-987.5" "-DUPPER_THRESH=-986.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 110: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 110: Test timeout computed to be: 1500 70: RETVAL: 0 70: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/yramp-1.mha 70: 70: STDERR: 70: Not an error 90: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-c.stdout.txt 90: -- REGEX is Ave len: *([-0-9.]*) 90: -- LOWER_THRESH is 14.141 90: -- UPPER_THRESH is 14.143 90: -- PARSED VALUE=|Ave len: 14.142| 90: -- PARSED_VALUE=|14.142| 90: Not an error 93: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-stats.stdout.txt 93: -- REGEX is AVE *([-0-9.]*) 93: -- LOWER_THRESH is 7.76 93: -- UPPER_THRESH is 7.78 93: -- PARSED VALUE=|MIN -558.201904 AVE 7.769665 MAX 558.680786 NONZERO 54872 NUMVOX 54872| 93: -- PARSED_VALUE=|7.769665| 93: Not an error 98: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/demons-a.stdout.txt 98: -- REGEX is ^Mean: *([0-9.]*) 98: -- LOWER_THRESH is 3.4 98: -- UPPER_THRESH is 3.5 98: -- PARSED VALUE=|Mean: 3.443 0.016 0.016| 98: -- PARSED_VALUE=|3.443| 98: Not an error 26: RETVAL: 0 26: STDOUT: Doing extraction 26: Keyholizing structure 0. 26: Write: DoseGridScaling = 0.000000 26: 26: STDERR: 26: Not an error 96: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-stats.stdout.txt 96: -- REGEX is Ave len: *([-0-9.]*) 96: -- LOWER_THRESH is 14.141 96: -- UPPER_THRESH is 14.143 96: -- PARSED VALUE=|Ave len: 14.142| 96: -- PARSED_VALUE=|14.142| 96: Not an error 101: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a-stats.stdout.txt 101: -- REGEX is MAX *([-0-9.]*) 101: -- LOWER_THRESH is 0.045 101: -- UPPER_THRESH is 0.055 101: -- PARSED VALUE=|MIN 0.000000 AVE 0.000135 MAX 0.050109 NUM 16384| 101: -- PARSED_VALUE=|0.050109| 101: Not an error 104: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-b-stats.stdout.txt 104: -- REGEX is MAX *([-0-9.]*) 104: -- LOWER_THRESH is 0.045 104: -- UPPER_THRESH is 0.055 104: -- PARSED VALUE=|MIN 0.000000 AVE 0.000138 MAX 0.049634 NUM 16384| 104: -- PARSED_VALUE=|0.049634| 104: Not an error 107: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-c-stats.stdout.txt 107: -- REGEX is MAX *([-0-9.]*) 107: -- LOWER_THRESH is 0.045 107: -- UPPER_THRESH is 0.055 107: -- PARSED VALUE=|MIN 0.000000 AVE 0.000125 MAX 0.050494 NUM 16384| 107: -- PARSED_VALUE=|0.050494| 107: Not an error 370/578 Test #26: pat-1 ................................. Passed 0.76 sec test 113 Start 113: fdk-cpu-d-check 113: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=-987.5" "-DUPPER_THRESH=-986.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 113: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 113: Test timeout computed to be: 1500 371/578 Test #70: yramp-1 ............................... Passed 0.39 sec test 116 Start 116: landmark-warp-a-check-1 116: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-992.0" "-DUPPER_THRESH=-991.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 116: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 116: Test timeout computed to be: 1500 372/578 Test #90: plm-compare-c-check ................... Passed 0.12 sec test 118 Start 118: landmark-warp-a-check-2 118: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-stats-2.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-23.2" "-DUPPER_THRESH=-22.7" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 118: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 118: Test timeout computed to be: 1500 373/578 Test #93: plm-diff-a-check ...................... Passed 0.12 sec test 121 Start 121: landmark-warp-b-check-1 121: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-992.2" "-DUPPER_THRESH=-991.8" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 121: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 121: Test timeout computed to be: 1500 374/578 Test #96: plm-diff-b-check ...................... Passed 0.11 sec test 123 Start 123: landmark-warp-b-check-2 123: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-stats-2.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-1.55" "-DUPPER_THRESH=-1.4" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 123: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 123: Test timeout computed to be: 1500 375/578 Test #98: demons-a-check ........................ Passed 0.12 sec test 126 Start 126: landmark-warp-c-check-1 126: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-992.0" "-DUPPER_THRESH=-991.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 126: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 126: Test timeout computed to be: 1500 376/578 Test #104: drr-b-check ........................... Passed 0.09 sec test 128 Start 128: landmark-warp-c-check-2 128: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-stats-2.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-1.6" "-DUPPER_THRESH=-1.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 128: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 128: Test timeout computed to be: 1500 377/578 Test #101: drr-a-check ........................... Passed 0.12 sec test 129 Start 129: landmark-warp-d 129: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;tps;-f;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-img.mha;-V;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-vf.mha;-L;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d.fcsv" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 129: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 129: Test timeout computed to be: 1500 378/578 Test #107: drr-c-check ........................... Passed 0.10 sec test 132 Start 132: plm-add-a-check 132: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-1000.1" "-DUPPER_THRESH=-999.9" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 132: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 132: Test timeout computed to be: 1500 76: RETVAL: 0 76: STDOUT: Setting header 76: Origin = -243.4211 -243.4211 -243.4211 76: Size = 38 38 38 76: Spacing = 13.1579 13.1579 13.1579 76: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 76: Header was set 76: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-gaussian-1.mha 76: 76: STDERR: 76: Not an error 379/578 Test #76: vf-gaussian-1 ......................... Passed 0.42 sec test 135 Start 135: plm-add-b-check 135: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-500.1" "-DUPPER_THRESH=-499.9" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 135: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 135: Test timeout computed to be: 1500 110: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a-stats.stdout.txt 110: -- REGEX is MAX *([-0-9.]*) 110: -- LOWER_THRESH is -987.5 110: -- UPPER_THRESH is -986.5 110: -- PARSED VALUE=|MIN -1000.000000 AVE -999.859619 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600| 110: -- PARSED_VALUE=|-987.021973| 110: Not an error 380/578 Test #110: fdk-cpu-a-check ....................... Passed 0.12 sec test 138 Start 138: plm-add-vf-a-check 138: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=20.000" "-DUPPER_THRESH=20.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 138: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 138: Test timeout computed to be: 1500 71: RETVAL: 0 71: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/zramp-1.mha 71: 71: STDERR: 71: Not an error 381/578 Test #71: zramp-1 ............................... Passed 0.47 sec test 141 Start 141: plm-add-vf-b-check 141: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=5.000" "-DUPPER_THRESH=5.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 141: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 141: Test timeout computed to be: 1500 113: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d-stats.stdout.txt 113: -- REGEX is MAX *([-0-9.]*) 113: -- LOWER_THRESH is -987.5 113: -- UPPER_THRESH is -986.5 113: -- PARSED VALUE=|MIN -1000.000000 AVE -999.848633 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600| 113: -- PARSED_VALUE=|-987.021973| 113: Not an error 382/578 Test #113: fdk-cpu-d-check ....................... Passed 0.12 sec test 144 Start 144: plm-adjust-a-check 144: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-819.55" "-DUPPER_THRESH=-819.54" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 144: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 144: Test timeout computed to be: 1500 116: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-stats-1.stdout.txt 116: -- REGEX is AVE *([-0-9.]*) 116: -- LOWER_THRESH is -992.0 116: -- UPPER_THRESH is -991.5 116: -- PARSED VALUE=|MIN -1000.000000 AVE -991.799744 MAX 0.000000 NONZERO 54494 NUMVOX 54872| 116: -- PARSED_VALUE=|-991.799744| 116: Not an error 383/578 Test #116: landmark-warp-a-check-1 ............... Passed 0.12 sec test 147 Start 147: plm-adjust-b-check 147: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-819.55" "-DUPPER_THRESH=-819.54" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 147: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 147: Test timeout computed to be: 1500 118: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-stats-2.stdout.txt 118: -- REGEX is Mean: *([-0-9.]*) 118: -- LOWER_THRESH is -23.2 118: -- UPPER_THRESH is -22.7 118: -- PARSED VALUE=|Mean: -22.960 0.011 0.000| 118: -- PARSED_VALUE=|-22.960| 118: Not an error 384/578 Test #118: landmark-warp-a-check-2 ............... Passed 0.12 sec test 150 Start 150: plm-adjust-c-check 150: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-819.55" "-DUPPER_THRESH=-819.54" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 150: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 150: Test timeout computed to be: 1500 121: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-stats-1.stdout.txt 121: -- REGEX is AVE *([-0-9.]*) 121: -- LOWER_THRESH is -992.2 121: -- UPPER_THRESH is -991.8 121: -- PARSED VALUE=|MIN -1000.000122 AVE -992.005493 MAX 0.000000 NONZERO 54512 NUMVOX 54872| 121: -- PARSED_VALUE=|-992.005493| 121: Not an error 385/578 Test #121: landmark-warp-b-check-1 ............... Passed 0.11 sec test 153 Start 153: plm-adjust-d-check 153: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-782.97" "-DUPPER_THRESH=-782.96" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 153: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 153: Test timeout computed to be: 1500 126: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-stats-1.stdout.txt 126: -- REGEX is AVE *([-0-9.]*) 126: -- LOWER_THRESH is -992.0 126: -- UPPER_THRESH is -991.5 126: -- PARSED VALUE=|MIN -1000.000122 AVE -991.665894 MAX 0.000000 NONZERO 54484 NUMVOX 54872| 126: -- PARSED_VALUE=|-991.665894| 126: Not an error 386/578 Test #126: landmark-warp-c-check-1 ............... Passed 0.09 sec test 156 Start 156: plm-adjust-e-check 156: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-1298.87" "-DUPPER_THRESH=-1298.86" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 156: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 156: Test timeout computed to be: 1500 123: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-stats-2.stdout.txt 123: -- REGEX is Mean: *([-0-9.]*) 123: -- LOWER_THRESH is -1.55 123: -- UPPER_THRESH is -1.4 123: -- PARSED VALUE=|Mean: -1.500 0.018 0.000| 123: -- PARSED_VALUE=|-1.500| 123: Not an error 387/578 Test #123: landmark-warp-b-check-2 ............... Passed 0.12 sec test 159 Start 159: plm-adjust-f-check 159: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-0.0196" "-DUPPER_THRESH=-0.0195" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 159: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 159: Test timeout computed to be: 1500 128: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-stats-2.stdout.txt 128: -- REGEX is Mean: *([-0-9.]*) 128: -- LOWER_THRESH is -1.6 128: -- UPPER_THRESH is -1.5 128: -- PARSED VALUE=|Mean: -1.562 0.019 0.000| 128: -- PARSED_VALUE=|-1.562| 128: Not an error 388/578 Test #128: landmark-warp-c-check-2 ............... Passed 0.11 sec test 162 Start 162: plm-adjust-g-check 162: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-0.0001" "-DUPPER_THRESH=0.0001" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 162: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 162: Test timeout computed to be: 1500 129: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 129: PARMS is lm-warp;-a;tps;-f;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-img.mha;-V;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-vf.mha;-L;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d.fcsv 129: EXPECTED_ERRNO is 132: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a-stats.stdout.txt 132: -- REGEX is AVE *([-0-9.]*) 132: -- LOWER_THRESH is -1000.1 132: -- UPPER_THRESH is -999.9 132: -- PARSED VALUE=|MIN -1000.000000 AVE -1000.000000 MAX -1000.000000 NONZERO 54872 NUMVOX 54872| 132: -- PARSED_VALUE=|-1000.000000| 132: Not an error 389/578 Test #132: plm-add-a-check ....................... Passed 0.09 sec test 165 Start 165: plm-adjust-h-check 165: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-0.2481" "-DUPPER_THRESH=-0.248" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 165: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 165: Test timeout computed to be: 1500 135: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b-stats.stdout.txt 135: -- REGEX is AVE *([-0-9.]*) 135: -- LOWER_THRESH is -500.1 135: -- UPPER_THRESH is -499.9 135: -- PARSED VALUE=|MIN -500.000000 AVE -500.000000 MAX -500.000000 NONZERO 54872 NUMVOX 54872| 135: -- PARSED_VALUE=|-500.000000| 135: Not an error 390/578 Test #135: plm-add-b-check ....................... Passed 0.10 sec test 168 Start 168: plm-adjust-i-check 168: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-921.5941" "-DUPPER_THRESH=-921.5940" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 168: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 168: Test timeout computed to be: 1500 138: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a-stats.stdout.txt 138: -- REGEX is Mean: *([-0-9.]*) 138: -- LOWER_THRESH is 20.000 138: -- UPPER_THRESH is 20.000 138: -- PARSED VALUE=|Mean: 20.000 0.000 0.000| 138: -- PARSED_VALUE=|20.000| 138: Not an error 391/578 Test #138: plm-add-vf-a-check .................... Passed 0.09 sec test 171 Start 171: plm-adjust-j-check 171: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-921.6276" "-DUPPER_THRESH=-921.6274" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 171: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 171: Test timeout computed to be: 1500 141: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b-stats.stdout.txt 141: -- REGEX is Mean: *([-0-9.]*) 141: -- LOWER_THRESH is 5.000 141: -- UPPER_THRESH is 5.000 141: -- PARSED VALUE=|Mean: 5.000 5.000 0.000| 141: -- PARSED_VALUE=|5.000| 141: Not an error 392/578 Test #141: plm-add-vf-b-check .................... Passed 0.08 sec test 174 Start 174: plm-boundary-a-check 174: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1056" "-DUPPER_THRESH=1056" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 174: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 174: Test timeout computed to be: 1500 144: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a-stats.stdout.txt 144: -- REGEX is AVE *([-0-9.]*) 144: -- LOWER_THRESH is -819.55 144: -- UPPER_THRESH is -819.54 144: -- PARSED VALUE=|MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872| 144: -- PARSED_VALUE=|-819.546265| 144: Not an error 147: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b-stats.stdout.txt 147: -- REGEX is AVE *([-0-9.]*) 147: -- LOWER_THRESH is -819.55 147: -- UPPER_THRESH is -819.54 147: -- PARSED VALUE=|MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872| 147: -- PARSED_VALUE=|-819.546265| 147: Not an error 150: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c-stats.stdout.txt 150: -- REGEX is AVE *([-0-9.]*) 150: -- LOWER_THRESH is -819.55 150: -- UPPER_THRESH is -819.54 150: -- PARSED VALUE=|MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872| 150: -- PARSED_VALUE=|-819.546265| 150: Not an error 153: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d-stats.stdout.txt 153: -- REGEX is AVE *([-0-9.]*) 153: -- LOWER_THRESH is -782.97 153: -- UPPER_THRESH is -782.96 153: -- PARSED VALUE=|MIN -800.000000 AVE -782.961060 MAX -600.000000 NONZERO 54872 NUMVOX 54872| 153: -- PARSED_VALUE=|-782.961060| 153: Not an error 156: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e-stats.stdout.txt 156: -- REGEX is AVE *([-0-9.]*) 156: -- LOWER_THRESH is -1298.87 156: -- UPPER_THRESH is -1298.86 156: -- PARSED VALUE=|MIN -1500.000000 AVE -1298.865601 MAX 987.531189 NONZERO 54872 NUMVOX 54872| 156: -- PARSED_VALUE=|-1298.865601| 156: Not an error 159: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f-stats.stdout.txt 159: -- REGEX is AVE *([-0-9.]*) 159: -- LOWER_THRESH is -0.0196 159: -- UPPER_THRESH is -0.0195 159: -- PARSED VALUE=|MIN -0.107574 AVE -0.019504 MAX 0.207060 NONZERO 54872 NUMVOX 54872| 159: -- PARSED_VALUE=|-0.019504| 159: Not an error 162: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g-stats.stdout.txt 162: -- REGEX is AVE *([-0-9.]*) 162: -- LOWER_THRESH is -0.0001 162: -- UPPER_THRESH is 0.0001 162: -- PARSED VALUE=|MIN -0.025301 AVE -0.000000 MAX 0.287606 NONZERO 54872 NUMVOX 54872| 162: -- PARSED_VALUE=|-0.000000| 162: Not an error 393/578 Test #144: plm-adjust-a-check .................... Passed 0.08 sec test 177 Start 177: plm-boundary-b-check 177: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1056" "-DUPPER_THRESH=1056" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 177: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 177: Test timeout computed to be: 1500 394/578 Test #147: plm-adjust-b-check .................... Passed 0.07 sec test 180 Start 180: plm-boundary-c-check 180: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=840" "-DUPPER_THRESH=840" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 180: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 180: Test timeout computed to be: 1500 395/578 Test #150: plm-adjust-c-check .................... Passed 0.08 sec test 183 Start 183: plm-boundary-d-check 183: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=2.614" "-DUPPER_THRESH=2.615" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 183: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 183: Test timeout computed to be: 1500 396/578 Test #153: plm-adjust-d-check .................... Passed 0.08 sec test 186 Start 186: plm-boundary-e-check 186: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=2.141" "-DUPPER_THRESH=2.143" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 186: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 186: Test timeout computed to be: 1500 397/578 Test #156: plm-adjust-e-check .................... Passed 0.09 sec test 189 Start 189: plm-convert-dicom-a-check 189: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-stats.stdout.txt" "-DREGEX= 0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=1648003" "-DUPPER_THRESH=1648003" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 189: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 189: Test timeout computed to be: 1500 398/578 Test #159: plm-adjust-f-check .................... Passed 0.08 sec test 192 Start 192: plm-convert-dicom-b-check 192: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-stats.stdout.txt" "-DREGEX=Patient Position . (.*[^ ]) *$" "-DMATCH_STRING=FFS" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckString.cmake" 192: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 192: Test timeout computed to be: 1500 399/578 Test #162: plm-adjust-g-check .................... Passed 0.08 sec test 195 Start 195: plm-convert-dicom-c-check 195: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=280" "-DUPPER_THRESH=280" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 195: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 195: Test timeout computed to be: 1500 165: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h-stats.stdout.txt 165: -- REGEX is AVE *([-0-9.]*) 165: -- LOWER_THRESH is -0.2481 165: -- UPPER_THRESH is -0.248 165: -- PARSED VALUE=|MIN -0.283680 AVE -0.248078 MAX 0.156631 NONZERO 54872 NUMVOX 54872| 165: -- PARSED_VALUE=|-0.248078| 165: Not an error 400/578 Test #165: plm-adjust-h-check .................... Passed 0.09 sec test 196 Start 196: plm-convert-dicom-d 196: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/non-existant-directory/;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-d.nrrd" "-DEXPECTED_ERRNO=1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 196: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 196: Test timeout computed to be: 1500 168: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-stats.stdout.txt 168: -- REGEX is AVE *([-0-9.]*) 168: -- LOWER_THRESH is -921.5941 168: -- UPPER_THRESH is -921.5940 168: -- PARSED VALUE=|MIN -1000.000000 AVE -921.594055 MAX -4.987521 NONZERO 54872 NUMVOX 54872| 168: -- PARSED_VALUE=|-921.594055| 168: Not an error 401/578 Test #168: plm-adjust-i-check .................... Passed 0.08 sec test 197 Start 197: plm-convert-dicom-e 197: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-e" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/tmp/;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-e.nrrd" "-DEXPECTED_ERRNO=1" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 197: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 197: Test timeout computed to be: 1500 171: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-stats.stdout.txt 171: -- REGEX is AVE *([-0-9.]*) 171: -- LOWER_THRESH is -921.6276 171: -- UPPER_THRESH is -921.6274 171: -- PARSED VALUE=|MIN -1000.000000 AVE -921.627502 MAX -4.987521 NONZERO 54872 NUMVOX 54872| 171: -- PARSED_VALUE=|-921.627502| 171: Not an error 402/578 Test #171: plm-adjust-j-check .................... Passed 0.09 sec test 198 Start 198: plm-convert-dicom-f 198: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-f" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom/rtss.dcm;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-f-dicom;--referenced-ct;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 198: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 198: Test timeout computed to be: 1500 174: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a-stats.stdout.txt 174: -- REGEX is NONZERO *([-0-9.]*) 174: -- LOWER_THRESH is 1056 174: -- UPPER_THRESH is 1056 174: -- PARSED VALUE=|MIN 0.000000 AVE 0.132000 MAX 1.000000 NONZERO 1056 NUMVOX 8000| 174: -- PARSED_VALUE=|1056| 174: Not an error 403/578 Test #174: plm-boundary-a-check .................. Passed 0.09 sec test 201 Start 201: plm-convert-dicom-donut-a-check 201: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-stats.stdout.txt" "-DREGEX=S *0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=2623" "-DUPPER_THRESH=2623" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 201: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 201: Test timeout computed to be: 1500 177: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b-stats.stdout.txt 177: -- REGEX is NONZERO *([-0-9.]*) 177: -- LOWER_THRESH is 1056 177: -- UPPER_THRESH is 1056 177: -- PARSED VALUE=|MIN 0.000000 AVE 0.132000 MAX 1.000000 NONZERO 1056 NUMVOX 8000| 177: -- PARSED_VALUE=|1056| 177: Not an error 404/578 Test #177: plm-boundary-b-check .................. Passed 0.10 sec test 204 Start 204: plm-convert-dicom-donut-b-check 204: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-stats.stdout.txt" "-DREGEX=S *0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=1924" "-DUPPER_THRESH=1924" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 204: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 204: Test timeout computed to be: 1500 180: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c-stats.stdout.txt 180: -- REGEX is NONZERO *([-0-9.]*) 180: -- LOWER_THRESH is 840 180: -- UPPER_THRESH is 840 180: -- PARSED VALUE=|MIN 0.000000 AVE 0.105000 MAX 1.000000 NONZERO 840 NUMVOX 8000| 180: -- PARSED_VALUE=|840| 180: Not an error 405/578 Test #180: plm-boundary-c-check .................. Passed 0.11 sec test 205 Start 205: plm-convert-dicom-donut-c 205: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1.mha;--input-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha;--input-ss-list;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt;--filenames-without-uids;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-c" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 205: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 205: Test timeout computed to be: 1500 186: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e-stats.stdout.txt 186: -- REGEX is AVE *([-0-9.]*) 186: -- LOWER_THRESH is 2.141 186: -- UPPER_THRESH is 2.143 186: -- PARSED VALUE=|MIN 0.000000 AVE 2.142000 MAX 56.000000 NONZERO 840 NUMVOX 8000| 186: -- PARSED_VALUE=|2.142000| 186: Not an error 406/578 Test #186: plm-boundary-e-check .................. Passed 0.11 sec test 208 Start 208: plm-convert-cxt-check 208: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt-stats.stdout.txt" "-DREGEX=S *0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=1648003" "-DUPPER_THRESH=1648003" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 208: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 208: Test timeout computed to be: 1500 189: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-stats.stdout.txt 189: -- REGEX is 0 *NVOX *([-0-9.]*) 189: -- LOWER_THRESH is 1648003 189: -- UPPER_THRESH is 1648003 189: -- PARSED VALUE=|S 0 NVOX 1648003| 189: -- PARSED_VALUE=|1648003| 189: Not an error 407/578 Test #189: plm-convert-dicom-a-check ............. Passed 0.12 sec test 212 Start 212: plm-convert-dose-scale-check 212: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=77.699" "-DUPPER_THRESH=77.7" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 212: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 212: Test timeout computed to be: 1500 183: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d-stats.stdout.txt 183: -- REGEX is AVE *([-0-9.]*) 183: -- LOWER_THRESH is 2.614 183: -- UPPER_THRESH is 2.615 183: -- PARSED VALUE=|MIN 0.000000 AVE 2.614500 MAX 56.000000 NONZERO 1056 NUMVOX 8000| 183: -- PARSED_VALUE=|2.614500| 183: Not an error 408/578 Test #183: plm-boundary-d-check .................. Passed 0.14 sec test 215 Start 215: plm-crop-a-check-1 215: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a-stats.stdout.txt" "-DREGEX=^Size = (.*)$" "-DMATCH_STRING=11 16 3" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckString.cmake" 215: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 215: Test timeout computed to be: 1500 192: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-stats.stdout.txt 192: -- REGEX is Patient Position . (.*[^ ]) *$ 192: -- MATCH_STRING is FFS 192: -- PARSED VALUE=|Patient Position = FFS | 192: -- PARSED_VALUE=|FFS| 192: -- LENGTH=3 192: -- |FFS|FFS| 192: Not an error 409/578 Test #192: plm-convert-dicom-b-check ............. Passed 0.14 sec test 218 Start 218: plm-crop-b-check-1 218: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b-stats.stdout.txt" "-DREGEX=^Size = (.*)$" "-DMATCH_STRING=19 11 4" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckString.cmake" 218: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 218: Test timeout computed to be: 1500 195: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-stats.stdout.txt 195: -- REGEX is NONZERO *([-0-9.]*) 195: -- LOWER_THRESH is 280 195: -- UPPER_THRESH is 280 195: -- PARSED VALUE=|MIN 0.000000 AVE 0.000280 MAX 1.000000 NONZERO 280 NUMVOX 1000000| 195: -- PARSED_VALUE=|280| 195: Not an error 410/578 Test #195: plm-convert-dicom-c-check ............. Passed 0.14 sec test 221 Start 221: plm-crop-c-check-1 221: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c-stats.stdout.txt" "-DREGEX=^Size = (.*)$" "-DMATCH_STRING=15 15 15" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckString.cmake" 221: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 221: Test timeout computed to be: 1500 196: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 196: PARMS is convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/non-existant-directory/;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-d.nrrd 196: EXPECTED_ERRNO is 1 197: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 197: PARMS is convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/tmp/;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-e.nrrd 197: EXPECTED_ERRNO is 1 198: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 198: PARMS is convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom/rtss.dcm;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-f-dicom;--referenced-ct;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom 198: EXPECTED_ERRNO is 201: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-stats.stdout.txt 201: -- REGEX is S *0 *NVOX *([-0-9.]*) 201: -- LOWER_THRESH is 2623 201: -- UPPER_THRESH is 2623 201: -- PARSED VALUE=|S 0 NVOX 2623| 201: -- PARSED_VALUE=|2623| 201: Not an error 411/578 Test #201: plm-convert-dicom-donut-a-check ....... Passed 0.12 sec test 223 Start 223: plm-dice-a-check-1 223: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-a.stdout.txt" "-DREGEX=^DICE: *([-0-9.]*)" "-DLOWER_THRESH=0.799" "-DUPPER_THRESH=0.801" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 223: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 223: Test timeout computed to be: 1500 204: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-stats.stdout.txt 204: -- REGEX is S *0 *NVOX *([-0-9.]*) 204: -- LOWER_THRESH is 1924 204: -- UPPER_THRESH is 1924 204: -- PARSED VALUE=|S 0 NVOX 1924| 204: -- PARSED_VALUE=|1924| 204: Not an error 205: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 205: PARMS is convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1.mha;--input-ss-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha;--input-ss-list;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt;--filenames-without-uids;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-c 205: EXPECTED_ERRNO is 208: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt-stats.stdout.txt 208: -- REGEX is S *0 *NVOX *([-0-9.]*) 208: -- LOWER_THRESH is 1648003 208: -- UPPER_THRESH is 1648003 208: -- PARSED VALUE=|S 0 NVOX 1648003| 208: -- PARSED_VALUE=|1648003| 208: Not an error 212: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale-stats.stdout.txt 212: -- REGEX is MAX *([-0-9.]*) 212: -- LOWER_THRESH is 77.699 212: -- UPPER_THRESH is 77.7 212: -- PARSED VALUE=|MIN 0.000000 AVE 0.294533 MAX 77.699997 NONZERO 208 NUMVOX 54872| 212: -- PARSED_VALUE=|77.699997| 212: Not an error 215: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a-stats.stdout.txt 215: -- REGEX is ^Size = (.*)$ 215: -- MATCH_STRING is 11 16 3 215: -- PARSED VALUE=|Size = 11 16 3| 215: -- PARSED_VALUE=|11 16 3| 215: -- LENGTH=7 215: -- |11 16 3|11 16 3| 215: Not an error 412/578 Test #204: plm-convert-dicom-donut-b-check ....... Passed 0.12 sec test 225 Start 225: plm-dice-b-check-1 225: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-b.stdout.txt" "-DREGEX=^DICE: *([-0-9.]*)" "-DLOWER_THRESH=0.999" "-DUPPER_THRESH=1.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 225: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 225: Test timeout computed to be: 1500 413/578 Test #208: plm-convert-cxt-check ................. Passed 0.10 sec test 227 Start 227: plm-dice-c-check-1 227: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=26.31" "-DUPPER_THRESH=26.32" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 227: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 227: Test timeout computed to be: 1500 414/578 Test #212: plm-convert-dose-scale-check .......... Passed 0.10 sec test 228 Start 228: plm-dice-c-check-2 228: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Avg average Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=3.40" "-DUPPER_THRESH=3.41" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 228: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 228: Test timeout computed to be: 1500 415/578 Test #215: plm-crop-a-check-1 .................... Passed 0.10 sec test 229 Start 229: plm-dice-c-check-3 229: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Avg average Hausdorff distance \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=7.11" "-DUPPER_THRESH=7.12" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 229: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 229: Test timeout computed to be: 1500 218: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b-stats.stdout.txt 218: -- REGEX is ^Size = (.*)$ 218: -- MATCH_STRING is 19 11 4 218: -- PARSED VALUE=|Size = 19 11 4| 218: -- PARSED_VALUE=|19 11 4| 218: -- LENGTH=7 218: -- |19 11 4|19 11 4| 218: Not an error 416/578 Test #218: plm-crop-b-check-1 .................... Passed 0.10 sec test 230 Start 230: plm-dice-c-check-4 230: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Max average Hausdorff distance \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=8.53" "-DUPPER_THRESH=8.54" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 230: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 230: Test timeout computed to be: 1500 223: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-a.stdout.txt 223: -- REGEX is ^DICE: *([-0-9.]*) 223: -- LOWER_THRESH is 0.799 223: -- UPPER_THRESH is 0.801 223: -- PARSED VALUE=|DICE: 0.800000| 223: -- PARSED_VALUE=|0.800000| 223: Not an error 417/578 Test #223: plm-dice-a-check-1 .................... Passed 0.09 sec test 231 Start 231: plm-dice-c-check-5 231: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Percent .* \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=26.31" "-DUPPER_THRESH=26.32" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 231: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 231: Test timeout computed to be: 1500 221: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c-stats.stdout.txt 221: -- REGEX is ^Size = (.*)$ 221: -- MATCH_STRING is 15 15 15 221: -- PARSED VALUE=|Size = 15 15 15| 221: -- PARSED_VALUE=|15 15 15| 221: -- LENGTH=8 221: -- |15 15 15|15 15 15| 221: Not an error 418/578 Test #221: plm-crop-c-check-1 .................... Passed 0.12 sec test 233 Start 233: plm-dice-d-check-1 233: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt" "-DREGEX=^Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=45.575" "-DUPPER_THRESH=45.585" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 233: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 233: Test timeout computed to be: 1500 129: RETVAL: 0 129: STDOUT: Hello world 129: Gonna convert pointsets 129: Pointset: 129: rect-2-0 -26.271700 -52.162899 46.052799 129: rect-2-1 65.870201 -52.543598 46.053001 129: rect-2-2 65.870201 52.543900 46.053001 129: rect-2-3 -25.510201 53.686199 46.053001 129: rect-2-4 -25.891001 -52.162899 -46.052502 129: rect-2-5 66.631699 -53.305099 -46.053001 129: rect-2-6 65.870201 53.305401 -46.053001 129: rect-2-7 -25.129499 53.686199 -46.053001 129: Conversion complete. 129: -26.2717 -52.1629 46.0528 129: 65.8702 -52.5436 46.053 129: 65.8702 52.5439 46.053 129: -25.5102 53.6862 46.053 129: -25.891 -52.1629 -46.0525 129: 66.6317 -53.3051 -46.053 129: 65.8702 53.3054 -46.053 129: -25.1295 53.6862 -46.053 129: Setting landmarks to TPS 129: Computing matrix 129: Setting xform 129: Converting to VF 129: Warping... 129: landmark 0 err 0.796775 mm 129: landmark 1 err 0.857190 mm 129: landmark 2 err 0.875645 mm 129: landmark 3 err 0.888102 mm 129: landmark 4 err 0.831617 mm 129: landmark 5 err 0.807000 mm 129: landmark 6 err 1.057389 mm 129: landmark 7 err 1.167740 mm 129: landmark RMS err 0.918533 mm 129: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-img.mha 129: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-vf.mha 129: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d.fcsv 129: 129: STDERR: 129: Not an error 419/578 Test #129: landmark-warp-d ....................... Passed 0.46 sec test 234 Start 234: plm-dice-d-check-2 234: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt" "-DREGEX=^Avg average Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=7.07" "-DUPPER_THRESH=7.08" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 234: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 234: Test timeout computed to be: 1500 225: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-b.stdout.txt 225: -- REGEX is ^DICE: *([-0-9.]*) 225: -- LOWER_THRESH is 0.999 225: -- UPPER_THRESH is 1.000 225: -- PARSED VALUE=|DICE: 1.000000| 225: -- PARSED_VALUE=|1.000000| 225: Not an error 420/578 Test #225: plm-dice-b-check-1 .................... Passed 0.12 sec test 235 Start 235: plm-dice-d-check-3 235: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt" "-DREGEX=^Avg average Hausdorff distance \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=14.89" "-DUPPER_THRESH=14.90" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 235: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 235: Test timeout computed to be: 1500 227: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt 227: -- REGEX is ^Hausdorff distance = *([-0-9.]*) 227: -- LOWER_THRESH is 26.31 227: -- UPPER_THRESH is 26.32 227: -- PARSED VALUE=|Hausdorff distance = 26.315790| 227: -- PARSED_VALUE=|26.315790| 227: Not an error 421/578 Test #227: plm-dice-c-check-1 .................... Passed 0.12 sec test 236 Start 236: plm-dice-d-check-4 236: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt" "-DREGEX=^Max average Hausdorff distance \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=18.38" "-DUPPER_THRESH=18.39" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 236: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 236: Test timeout computed to be: 1500 229: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt 229: -- REGEX is ^Avg average Hausdorff distance \(boundary\) = *([-0-9.]*) 229: -- LOWER_THRESH is 7.11 229: -- UPPER_THRESH is 7.12 229: -- PARSED VALUE=|Avg average Hausdorff distance (boundary) = 7.115030| 229: -- PARSED_VALUE=|7.115030| 229: Not an error 422/578 Test #229: plm-dice-c-check-3 .................... Passed 0.10 sec test 237 Start 237: plm-dice-d-check-5 237: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt" "-DREGEX=^Percent .* \(boundary\) = *([-0-9.]*)" "-DLOWER_THRESH=32.89" "-DUPPER_THRESH=32.90" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 237: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 237: Test timeout computed to be: 1500 228: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt 228: -- REGEX is ^Avg average Hausdorff distance = *([-0-9.]*) 228: -- LOWER_THRESH is 3.40 228: -- UPPER_THRESH is 3.41 228: -- PARSED VALUE=|Avg average Hausdorff distance = 3.406955| 228: -- PARSED_VALUE=|3.406955| 228: Not an error 423/578 Test #228: plm-dice-c-check-2 .................... Passed 0.13 sec test 239 Start 239: plm-dice-e-check-1 239: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-e.stdout.txt" "-DREGEX=^DICE: *([-0-9.]*)" "-DLOWER_THRESH=0.96550" "-DUPPER_THRESH=0.96554" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 239: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 239: Test timeout computed to be: 1500 198: RETVAL: 0 198: STDOUT: Loading RDD 198: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8627RTDOSE 198: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8628RTSTRUCT 198: Found DCM_ReferencedFrameOfReferenceSequence! 198: Found DCM_RTReferencedStudySequence! 198: Trying to load rt dose. 198: Load: DoseGridScaling = 0.000000 198: RTDOSE: dim = 38 38 38 198: ipp = -243.421005 -243.421005 -243.421005 198: spc = 13.157900 13.157900 13.157900 198: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 198: Bits_alloc: 32 198: Bits_stored: 32 198: High_bit: 31 198: Pixel_rep: 0 198: rc = 1, length = 109744, npix = 54872 198: Trying to load rt structure set. 198: Adding structure (1), Foreground 198: Structure 1 has color 255\0\0 198: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8627RTDOSE 198: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8628RTSTRUCT 198: Found DCM_ReferencedFrameOfReferenceSequence! 198: Found DCM_RTReferencedStudySequence! 198: Trying to load rt dose. 198: Load: DoseGridScaling = 0.000000 198: RTDOSE: dim = 38 38 38 198: ipp = -243.421005 -243.421005 -243.421005 198: spc = 13.157900 13.157900 13.157900 198: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 198: Bits_alloc: 32 198: Bits_stored: 32 198: High_bit: 31 198: Pixel_rep: 0 198: rc = 1, length = 109744, npix = 54872 198: Trying to load rt structure set. 198: Adding structure (1), Foreground 198: Structure 1 has color 255\0\0 198: Loading RDD complete 198: date_string: 20230502 198: description_string: 198: referring_physician_name_string: 198: accession_number_string: 198: time_string: 231058 198: study_id_string: 198: position_reference_indicator_string: 198: ct_series_uid: 1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8626 198: dose_instance_uid: 198: dose_series_uid: 1.2.826.0.1.3680043.8.274.1.1.8323329.3553650.1683112281.532306 198: plan_instance_uid: 198: rtstruct_instance_uid: 1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8624 198: rtstruct_series_uid: 1.2.826.0.1.3680043.8.274.1.1.8323329.3553650.1683112281.532307 198: study_metadata: 198: Metadata 198: 0008,0052 | 1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8607 198: 0010,0010 | RECT^SYNTH 198: 0010,0020 | RECT-SYNTH 198: 0010,0040 | O 198: 0018,5100 | HFS 198: 0020,000d | 1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8606 198: 0020,0010 | 10001 198: image_metadata: 198: Metadata 198: 0008,0012 | 20230502 198: 0008,0013 | 231058 198: 0008,0060 | CT 198: 0008,103e | rect-2 198: rtstruct_metadata: 198: Metadata 198: dose_metadata: 198: Metadata 198: rtplan_metadata: 198: Metadata 198: sro_metadata: 198: Metadata 198: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542141.1683112258.256389RTSTRUCT 198: Found DCM_ReferencedFrameOfReferenceSequence! 198: Found DCM_RTReferencedStudySequence! 198: Trying to load rt structure set. 198: Adding structure (1), Foreground 198: Structure 1 has color 255\0\0 198: Setting PIH from RDD 198: PIH is: 198: Origin = -243.4211 -243.4211 -243.4211 198: Size = 38 38 38 198: Spacing = 13.1579 13.1579 13.1579 198: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 198: Rt_study_warp: Convert ss_img to cxt. 198: Rt_study_warp: Apply dicom_dir. 198: Rt_study_warp: Set geometry from PIH. 198: Rt_study_warp: Set rasterization geometry. 198: rast_dim = 512 512 7 198: rast_offset = -55.2632 -55.2632 -46.0526 198: rast_spacing = 0.215872 0.215872 13.1579 198: Rt_study_warp: warp and save ss. 198: Warp_and_save_ss: save_ss_img 198: Rt_study_warp: Save dicom. 198: Keyholizing structure 0. 198: Finished! 198: 198: STDERR: 198: Not an error 424/578 Test #198: plm-convert-dicom-f ................... Passed 0.32 sec test 240 Start 240: plm-dice-e-check-2 240: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-e.stdout.txt" "-DREGEX=^Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=4" "-DUPPER_THRESH=4" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 240: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 240: Test timeout computed to be: 1500 196: RETVAL: 1 196: STDOUT: Could not open input file /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/non-existant-directory/ for read 196: 196: STDERR: 196: Not an error 230: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt 230: -- REGEX is ^Max average Hausdorff distance \(boundary\) = *([-0-9.]*) 230: -- LOWER_THRESH is 8.53 230: -- UPPER_THRESH is 8.54 230: -- PARSED VALUE=|Max average Hausdorff distance (boundary) = 8.534851| 230: -- PARSED_VALUE=|8.534851| 230: Not an error 425/578 Test #230: plm-dice-c-check-4 .................... Passed 0.12 sec test 242 Start 242: plm-dice-f-check-1 242: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-f.stdout.txt" "-DREGEX=^DICE: *([-0-9.]*)" "-DLOWER_THRESH=1" "-DUPPER_THRESH=1" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 242: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 242: Test timeout computed to be: 1500 231: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt 231: -- REGEX is ^Percent .* \(boundary\) = *([-0-9.]*) 231: -- LOWER_THRESH is 26.31 231: -- UPPER_THRESH is 26.32 231: -- PARSED VALUE=|Percent (0.95) Hausdorff distance (boundary) = 26.315790| 231: -- PARSED_VALUE=|26.315790| 231: Not an error 426/578 Test #231: plm-dice-c-check-5 .................... Passed 0.11 sec test 243 Start 243: plm-dice-f-check-2 243: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-f.stdout.txt" "-DREGEX=^Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=0" "-DUPPER_THRESH=0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 243: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 243: Test timeout computed to be: 1500 233: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt 233: -- REGEX is ^Hausdorff distance = *([-0-9.]*) 233: -- LOWER_THRESH is 45.575 233: -- UPPER_THRESH is 45.585 233: -- PARSED VALUE=|Hausdorff distance = 45.580288| 233: -- PARSED_VALUE=|45.580288| 233: Not an error 427/578 Test #233: plm-dice-d-check-1 .................... Passed 0.11 sec test 244 Start 244: plm-dmap-a 244: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dmap-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dmap;--algorithm;maurer;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-a.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 244: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 244: Test timeout computed to be: 1500 234: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt 234: -- REGEX is ^Avg average Hausdorff distance = *([-0-9.]*) 234: -- LOWER_THRESH is 7.07 234: -- UPPER_THRESH is 7.08 234: -- PARSED VALUE=|Avg average Hausdorff distance = 7.072703| 234: -- PARSED_VALUE=|7.072703| 234: Not an error 235: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt 235: -- REGEX is ^Avg average Hausdorff distance \(boundary\) = *([-0-9.]*) 235: -- LOWER_THRESH is 14.89 235: -- UPPER_THRESH is 14.90 235: -- PARSED VALUE=|Avg average Hausdorff distance (boundary) = 14.894061| 235: -- PARSED_VALUE=|14.894061| 235: Not an error 236: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt 236: -- REGEX is ^Max average Hausdorff distance \(boundary\) = *([-0-9.]*) 236: -- LOWER_THRESH is 18.38 236: -- UPPER_THRESH is 18.39 236: -- PARSED VALUE=|Max average Hausdorff distance (boundary) = 18.384613| 236: -- PARSED_VALUE=|18.384613| 236: Not an error 197: RETVAL: 1 197: STDOUT: Sorry, could not load input as any known type. 197: 197: STDERR: 197: Not an error 237: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt 237: -- REGEX is ^Percent .* \(boundary\) = *([-0-9.]*) 237: -- LOWER_THRESH is 32.89 237: -- UPPER_THRESH is 32.90 237: -- PARSED VALUE=|Percent (0.95) Hausdorff distance (boundary) = 32.894737| 237: -- PARSED_VALUE=|32.894737| 237: Not an error 239: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-e.stdout.txt 239: -- REGEX is ^DICE: *([-0-9.]*) 239: -- LOWER_THRESH is 0.96550 239: -- UPPER_THRESH is 0.96554 239: -- PARSED VALUE=|DICE: 0.965517| 239: -- PARSED_VALUE=|0.965517| 239: Not an error 240: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-e.stdout.txt 240: -- REGEX is ^Hausdorff distance = *([-0-9.]*) 240: -- LOWER_THRESH is 4 240: -- UPPER_THRESH is 4 240: -- PARSED VALUE=|Hausdorff distance = 4.000000| 240: -- PARSED_VALUE=|4.000000| 240: Not an error 428/578 Test #196: plm-convert-dicom-d ................... Passed 0.37 sec test 246 Start 246: plm-dmap-c 246: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dmap-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dmap;--algorithm;song_maurer;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-c.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 246: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 246: Test timeout computed to be: 1500 429/578 Test #197: plm-convert-dicom-e ................... Passed 0.37 sec test 248 Start 248: plm-dvh-a-check-1 248: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv" "-DREGEX=^15,([-0-9.]*)," "-DLOWER_THRESH=0.999" "-DUPPER_THRESH=1.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 248: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 248: Test timeout computed to be: 1500 430/578 Test #234: plm-dice-d-check-2 .................... Passed 0.11 sec test 249 Start 249: plm-dvh-a-check-2 249: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv" "-DREGEX=^15.5,([-0-9.]*)," "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.001" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 249: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 249: Test timeout computed to be: 1500 431/578 Test #235: plm-dice-d-check-3 .................... Passed 0.10 sec test 251 Start 251: plm-dvh-b-check-1 251: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv" "-DREGEX=^15,([-0-9.]*)" "-DLOWER_THRESH=0.999" "-DUPPER_THRESH=1.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 251: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 251: Test timeout computed to be: 1500 432/578 Test #236: plm-dice-d-check-4 .................... Passed 0.10 sec test 252 Start 252: plm-dvh-b-check-2 252: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv" "-DREGEX=^15.5,([-0-9.]*)" "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.001" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 252: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 252: Test timeout computed to be: 1500 433/578 Test #237: plm-dice-d-check-5 .................... Passed 0.10 sec test 254 Start 254: plm-dvh-c-check-1 254: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-c.csv" "-DREGEX=^15,([-0-9.]*)" "-DLOWER_THRESH=0.780" "-DUPPER_THRESH=0.783" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 254: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 254: Test timeout computed to be: 1500 434/578 Test #239: plm-dice-e-check-1 .................... Passed 0.10 sec test 255 Start 255: plm-dvh-c-check-2 255: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-c.csv" "-DREGEX=^15.5,([-0-9.]*)" "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.001" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 255: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 255: Test timeout computed to be: 1500 435/578 Test #240: plm-dice-e-check-2 .................... Passed 0.10 sec test 258 Start 258: plm-fill-a-check 258: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-0.1" "-DUPPER_THRESH=+0.1" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 258: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 258: Test timeout computed to be: 1500 242: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-f.stdout.txt 242: -- REGEX is ^DICE: *([-0-9.]*) 242: -- LOWER_THRESH is 1 242: -- UPPER_THRESH is 1 242: -- PARSED VALUE=|DICE: 1.000000| 242: -- PARSED_VALUE=|1.000000| 242: Not an error 436/578 Test #242: plm-dice-f-check-1 .................... Passed 0.11 sec test 261 Start 261: plm-mask-a-check 261: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-1000.1" "-DUPPER_THRESH=-999.9" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 261: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 261: Test timeout computed to be: 1500 243: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-f.stdout.txt 243: -- REGEX is ^Hausdorff distance = *([-0-9.]*) 243: -- LOWER_THRESH is 0 243: -- UPPER_THRESH is 0 243: -- PARSED VALUE=|Hausdorff distance = 0.000000| 243: -- PARSED_VALUE=|0.000000| 243: Not an error 437/578 Test #243: plm-dice-f-check-2 .................... Passed 0.11 sec test 264 Start 264: plm-gamma-a-check 264: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.023" "-DUPPER_THRESH=0.024" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 264: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 264: Test timeout computed to be: 1500 244: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 244: PARMS is dmap;--algorithm;maurer;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-a.mha 244: EXPECTED_ERRNO is 246: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 246: PARMS is dmap;--algorithm;song_maurer;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-c.mha 246: EXPECTED_ERRNO is 248: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv 248: -- REGEX is ^15,([-0-9.]*), 248: -- LOWER_THRESH is 0.999 248: -- UPPER_THRESH is 1.0 248: -- PARSED VALUE=|15,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0| 248: -- PARSED_VALUE=|1| 248: Not an error 438/578 Test #248: plm-dvh-a-check-1 ..................... Passed 0.10 sec test 267 Start 267: plm-gamma-b-check 267: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.245" "-DUPPER_THRESH=0.255" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 267: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 267: Test timeout computed to be: 1500 249: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv 249: -- REGEX is ^15.5,([-0-9.]*), 249: -- LOWER_THRESH is 0.0 249: -- UPPER_THRESH is 0.001 249: -- PARSED VALUE=|15.5,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0| 249: -- PARSED_VALUE=|0| 249: Not an error 439/578 Test #249: plm-dvh-a-check-2 ..................... Passed 0.10 sec test 269 Start 269: plm-gamma-c-check 269: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.stdout.txt" "-DREGEX=Pass rate = *([-0-9.]*)" "-DLOWER_THRESH=90.6" "-DUPPER_THRESH=90.8" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 269: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 269: Test timeout computed to be: 1500 251: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv 251: -- REGEX is ^15,([-0-9.]*) 251: -- LOWER_THRESH is 0.999 251: -- UPPER_THRESH is 1.0 251: -- PARSED VALUE=|15,1| 251: -- PARSED_VALUE=|1| 251: Not an error 440/578 Test #251: plm-dvh-b-check-1 ..................... Passed 0.09 sec test 271 Start 271: plm-gamma-d-check 271: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.stdout.txt" "-DREGEX=Pass rate = *([-0-9.]*)" "-DLOWER_THRESH=89.9" "-DUPPER_THRESH=90.1" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 271: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 271: Test timeout computed to be: 1500 252: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv 252: -- REGEX is ^15.5,([-0-9.]*) 252: -- LOWER_THRESH is 0.0 252: -- UPPER_THRESH is 0.001 252: -- PARSED VALUE=|15.5,0| 252: -- PARSED_VALUE=|0| 252: Not an error 441/578 Test #252: plm-dvh-b-check-2 ..................... Passed 0.11 sec test 274 Start 274: plm-maximum-a-check 274: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 274: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 274: Test timeout computed to be: 1500 254: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-c.csv 254: -- REGEX is ^15,([-0-9.]*) 254: -- LOWER_THRESH is 0.780 254: -- UPPER_THRESH is 0.783 254: -- PARSED VALUE=|15,0.781709| 254: -- PARSED_VALUE=|0.781709| 254: Not an error 442/578 Test #254: plm-dvh-c-check-1 ..................... Passed 0.10 sec test 277 Start 277: plm-multiply-a-check 277: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 277: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 277: Test timeout computed to be: 1500 255: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-c.csv 255: -- REGEX is ^15.5,([-0-9.]*) 255: -- LOWER_THRESH is 0.0 255: -- UPPER_THRESH is 0.001 255: -- PARSED VALUE=|15.5,0| 255: -- PARSED_VALUE=|0| 255: Not an error 443/578 Test #255: plm-dvh-c-check-2 ..................... Passed 0.10 sec test 280 Start 280: plm-multiply-vf-a-check 280: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=100.000" "-DUPPER_THRESH=100.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 280: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 280: Test timeout computed to be: 1500 258: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a-stats.stdout.txt 258: -- REGEX is AVE *([-0-9.]*) 258: -- LOWER_THRESH is -0.1 258: -- UPPER_THRESH is +0.1 258: -- PARSED VALUE=|MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872| 258: -- PARSED_VALUE=|0.000000| 258: Not an error 444/578 Test #258: plm-fill-a-check ...................... Passed 0.09 sec test 281 Start 281: plm-usage 281: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-usage" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 281: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 281: Test timeout computed to be: 1500 261: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a-stats.stdout.txt 261: -- REGEX is AVE *([-0-9.]*) 261: -- LOWER_THRESH is -1000.1 261: -- UPPER_THRESH is -999.9 261: -- PARSED VALUE=|MIN -1000.000000 AVE -1000.000000 MAX -1000.000000 NONZERO 54872 NUMVOX 54872| 261: -- PARSED_VALUE=|-1000.000000| 261: Not an error 445/578 Test #261: plm-mask-a-check ...................... Passed 0.09 sec test 284 Start 284: plm-reg-align-center-check 284: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-stats.stdout.txt" "-DREGEX=MAE *([-0-9.]*)" "-DLOWER_THRESH=-0.005" "-DUPPER_THRESH=0.005" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 284: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 284: Test timeout computed to be: 1500 264: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a-stats.stdout.txt 264: -- REGEX is AVE *([-0-9.]*) 264: -- LOWER_THRESH is 0.023 264: -- UPPER_THRESH is 0.024 264: -- PARSED VALUE=|MIN 0.000000 AVE 0.023500 MAX 0.666667 NONZERO 400 NUMVOX 8000| 264: -- PARSED_VALUE=|0.023500| 264: Not an error 446/578 Test #264: plm-gamma-a-check ..................... Passed 0.09 sec test 287 Start 287: plm-reg-itk-translation-check 287: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-677.6" "-DUPPER_THRESH=-677.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 287: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 287: Test timeout computed to be: 1500 267: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b-stats.stdout.txt 267: -- REGEX is AVE *([-0-9.]*) 267: -- LOWER_THRESH is 0.245 267: -- UPPER_THRESH is 0.255 267: -- PARSED VALUE=|MIN 0.000000 AVE 0.250000 MAX 2.000000 NONZERO 1000 NUMVOX 8000| 267: -- PARSED_VALUE=|0.250000| 267: Not an error 447/578 Test #267: plm-gamma-b-check ..................... Passed 0.09 sec test 290 Start 290: plm-reg-itk-rigid-a-check-1 290: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-939.3" "-DUPPER_THRESH=-939.1" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 290: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 290: Test timeout computed to be: 1500 269: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.stdout.txt 269: -- REGEX is Pass rate = *([-0-9.]*) 269: -- LOWER_THRESH is 90.6 269: -- UPPER_THRESH is 90.8 269: -- PARSED VALUE=|Pass rate = 90.719998 %| 269: -- PARSED_VALUE=|90.719998| 269: Not an error 448/578 Test #269: plm-gamma-c-check ..................... Passed 0.10 sec test 292 Start 292: plm-reg-itk-rigid-a-check-2 292: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-stats-2.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-939.3" "-DUPPER_THRESH=-939.1" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 292: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 292: Test timeout computed to be: 1500 271: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.stdout.txt 271: -- REGEX is Pass rate = *([-0-9.]*) 271: -- LOWER_THRESH is 89.9 271: -- UPPER_THRESH is 90.1 271: -- PARSED VALUE=|Pass rate = 89.999998 %| 271: -- PARSED_VALUE=|89.999998| 271: Not an error 274: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a-stats.stdout.txt 274: -- REGEX is AVE *([-0-9.]*) 274: -- LOWER_THRESH is 0.0 274: -- UPPER_THRESH is 0.0 274: -- PARSED VALUE=|MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872| 274: -- PARSED_VALUE=|0.000000| 274: Not an error 277: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a-stats.stdout.txt 277: -- REGEX is AVE *([-0-9.]*) 277: -- LOWER_THRESH is 0.0 277: -- UPPER_THRESH is 0.0 277: -- PARSED VALUE=|MIN -0.000000 AVE 0.000000 MAX -0.000000 NONZERO 0 NUMVOX 54872| 277: -- PARSED_VALUE=|0.000000| 277: Not an error 205: RETVAL: 0 205: STDOUT: Trying to load ss_list: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt 205: Setting PIH from M_IMG 205: PIH is: 205: Origin = -25.0000 -25.0000 -25.0000 205: Size = 38 38 38 205: Spacing = 1.3158 1.3158 1.3158 205: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 205: Rt_study_warp: Convert ss_img to cxt. 205: Doing extraction 205: Rt_study_warp: Apply dicom_dir. 205: Rt_study_warp: Set geometry from PIH. 205: Rt_study_warp: Set rasterization geometry. 205: rast_dim = 512 512 14 205: rast_offset = -10.3618 -10.3618 -9.21053 205: rast_spacing = 0.0404759 0.0404759 1.31579 205: Rt_study_warp: warp and save ss. 205: Warp_and_save_ss: save_ss_img 205: Rt_study_warp: Save dicom. 205: Keyholizing structure 0. 205: Finished! 205: 205: STDERR: 205: Not an error 280: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a-stats.stdout.txt 280: -- REGEX is Mean: *([-0-9.]*) 280: -- LOWER_THRESH is 100.000 280: -- UPPER_THRESH is 100.000 280: -- PARSED VALUE=|Mean: 100.000 100.000 100.000| 280: -- PARSED_VALUE=|100.000| 280: Not an error 281: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 281: PARMS is 281: EXPECTED_ERRNO is 449/578 Test #205: plm-convert-dicom-donut-c ............. Passed 0.52 sec test 295 Start 295: plm-reg-itk-similarity-check-1 295: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-981.3" "-DUPPER_THRESH=-981.1" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 295: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 295: Test timeout computed to be: 1500 450/578 Test #271: plm-gamma-d-check ..................... Passed 0.10 sec test 297 Start 297: plm-reg-itk-similarity-check-2 297: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-stats-2.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-940.8" "-DUPPER_THRESH=-940.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 297: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 297: Test timeout computed to be: 1500 451/578 Test #274: plm-maximum-a-check ................... Passed 0.10 sec test 300 Start 300: plm-reg-itk-bspline-check-1 300: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-764.0" "-DUPPER_THRESH=-763.6" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 300: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 300: Test timeout computed to be: 1500 452/578 Test #277: plm-multiply-a-check .................. Passed 0.10 sec test 302 Start 302: plm-reg-itk-demons-check-1 302: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons.stdout.txt" "-DREGEX=VF_AVG +[^ ] +([-0-9.]*)" "-DLOWER_THRESH=31.85" "-DUPPER_THRESH=34.95" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 302: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 302: Test timeout computed to be: 1500 453/578 Test #280: plm-multiply-vf-a-check ............... Passed 0.10 sec test 304 Start 304: plm-reg-itk-demons-check-2 304: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-stats-2.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-755.3" "-DUPPER_THRESH=-754.6" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 304: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 304: Test timeout computed to be: 1500 287: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-stats.stdout.txt 287: -- REGEX is AVE *([-0-9.]*) 287: -- LOWER_THRESH is -677.6 287: -- UPPER_THRESH is -677.5 287: -- PARSED VALUE=|MIN -999.914246 AVE -677.557922 MAX 0.000000 NONZERO 43320 NUMVOX 54872| 287: -- PARSED_VALUE=|-677.557922| 287: Not an error 454/578 Test #287: plm-reg-itk-translation-check ......... Passed 0.08 sec test 306 Start 306: plm-reg-itk-demons-diff-check-1 306: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.stdout.txt" "-DREGEX=VF_AVG +[^ ] +([-0-9.]*)" "-DLOWER_THRESH=31.2" "-DUPPER_THRESH=31.3" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 306: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 306: Test timeout computed to be: 1500 284: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-stats.stdout.txt 284: -- REGEX is MAE *([-0-9.]*) 284: -- LOWER_THRESH is -0.005 284: -- UPPER_THRESH is 0.005 284: -- PARSED VALUE=|MAE 0.000002 MSE 0.000000| 284: -- PARSED_VALUE=|0.000002| 284: Not an error 455/578 Test #284: plm-reg-align-center-check ............ Passed 0.10 sec test 308 Start 308: plm-reg-itk-demons-logd-check-1 308: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.stdout.txt" "-DREGEX=VF_AVG +[^ ] +([-0-9.]*)" "-DLOWER_THRESH=32.65" "-DUPPER_THRESH=32.75" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 308: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 308: Test timeout computed to be: 1500 290: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-stats-1.stdout.txt 290: -- REGEX is AVE *([-0-9.]*) 290: -- LOWER_THRESH is -939.3 290: -- UPPER_THRESH is -939.1 290: -- PARSED VALUE=|MIN -1000.000000 AVE -939.203979 MAX 0.000000 NONZERO 51690 NUMVOX 54872| 290: -- PARSED_VALUE=|-939.203979| 290: Not an error 456/578 Test #290: plm-reg-itk-rigid-a-check-1 ........... Passed 0.09 sec test 310 Start 310: plm-reg-itk-demons-sym-logd-check-1 310: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.stdout.txt" "-DREGEX=VF_AVG +[^ ] +([-0-9.]*)" "-DLOWER_THRESH=31.85" "-DUPPER_THRESH=35.95" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 310: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 310: Test timeout computed to be: 1500 292: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-stats-2.stdout.txt 292: -- REGEX is AVE *([-0-9.]*) 292: -- LOWER_THRESH is -939.3 292: -- UPPER_THRESH is -939.1 292: -- PARSED VALUE=|MIN -1000.000000 AVE -939.203979 MAX 0.000000 NONZERO 51690 NUMVOX 54872| 292: -- PARSED_VALUE=|-939.203979| 292: Not an error 457/578 Test #292: plm-reg-itk-rigid-a-check-2 ........... Passed 0.09 sec test 313 Start 313: plm-bsp-mse-c-check 313: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 313: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 313: Test timeout computed to be: 1500 295: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-stats-1.stdout.txt 295: -- REGEX is AVE *([-0-9.]*) 295: -- LOWER_THRESH is -981.3 295: -- UPPER_THRESH is -981.1 295: -- PARSED VALUE=|MIN -1000.000000 AVE -981.187012 MAX 0.000000 NONZERO 54152 NUMVOX 54872| 295: -- PARSED_VALUE=|-981.187012| 295: Not an error 458/578 Test #295: plm-reg-itk-similarity-check-1 ........ Passed 0.09 sec test 316 Start 316: plm-bsp-mse-g-check 316: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 316: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 316: Test timeout computed to be: 1500 297: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-stats-2.stdout.txt 297: -- REGEX is AVE *([-0-9.]*) 297: -- LOWER_THRESH is -940.8 297: -- UPPER_THRESH is -940.5 297: -- PARSED VALUE=|MIN -1000.000000 AVE -940.684265 MAX 0.000000 NONZERO 52716 NUMVOX 54872| 297: -- PARSED_VALUE=|-940.684265| 297: Not an error 459/578 Test #297: plm-reg-itk-similarity-check-2 ........ Passed 0.09 sec test 319 Start 319: plm-bsp-mse-h-check 319: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 319: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 319: Test timeout computed to be: 1500 300: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-stats-1.stdout.txt 300: -- REGEX is AVE *([-0-9.]*) 300: -- LOWER_THRESH is -764.0 300: -- UPPER_THRESH is -763.6 300: -- PARSED VALUE=|MIN -999.992249 AVE -763.817810 MAX 0.000000 NONZERO 48346 NUMVOX 54872| 300: -- PARSED_VALUE=|-763.817810| 300: Not an error 460/578 Test #300: plm-reg-itk-bspline-check-1 ........... Passed 0.08 sec test 322 Start 322: plm-bsp-mse-i-check 322: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 322: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 322: Test timeout computed to be: 1500 302: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons.stdout.txt 302: -- REGEX is VF_AVG +[^ ] +([-0-9.]*) 302: -- LOWER_THRESH is 31.85 302: -- UPPER_THRESH is 34.95 302: -- PARSED VALUE=|VF_MAX = 97.6986 VF_AVG = 31.9237| 302: -- PARSED_VALUE=|31.9237| 302: Not an error 461/578 Test #302: plm-reg-itk-demons-check-1 ............ Passed 0.08 sec test 325 Start 325: plm-bsp-mse-k-check 325: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 325: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 325: Test timeout computed to be: 1500 304: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-stats-2.stdout.txt 304: -- REGEX is AVE *([-0-9.]*) 304: -- LOWER_THRESH is -755.3 304: -- UPPER_THRESH is -754.6 304: -- PARSED VALUE=|MIN -999.914856 AVE -754.915161 MAX 0.000000 NONZERO 47950 NUMVOX 54872| 304: -- PARSED_VALUE=|-754.915161| 304: Not an error 462/578 Test #304: plm-reg-itk-demons-check-2 ............ Passed 0.09 sec test 328 Start 328: plm-bsp-mse-l-check 328: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 328: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 328: Test timeout computed to be: 1500 244: RETVAL: 0 244: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-a.mha 244: 244: STDERR: 244: Not an error 463/578 Test #244: plm-dmap-a ............................ Passed 0.36 sec test 330 Start 330: plm-bsp-mse-o-stats 330: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-o-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 330: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 330: Test timeout computed to be: 1500 306: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.stdout.txt 306: -- REGEX is VF_AVG +[^ ] +([-0-9.]*) 306: -- LOWER_THRESH is 31.2 306: -- UPPER_THRESH is 31.3 306: -- PARSED VALUE=|VF_MAX = 102.433 VF_AVG = 31.2783| 306: -- PARSED_VALUE=|31.2783| 306: Not an error 464/578 Test #306: plm-reg-itk-demons-diff-check-1 ....... Passed 0.11 sec test 332 Start 332: plm-bsp-mse-p-stats 332: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-p-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 332: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 332: Test timeout computed to be: 1500 308: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.stdout.txt 308: -- REGEX is VF_AVG +[^ ] +([-0-9.]*) 308: -- LOWER_THRESH is 32.65 308: -- UPPER_THRESH is 32.75 308: -- PARSED VALUE=|VF_MAX = 112.668 VF_AVG = 32.7138| 308: -- PARSED_VALUE=|32.7138| 308: Not an error 313: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-stats.stdout.txt 313: -- REGEX is AVE *([-0-9.]*) 313: -- LOWER_THRESH is -746.0 313: -- UPPER_THRESH is -744.5 313: -- PARSED VALUE=|MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| 313: -- PARSED_VALUE=|-745.347717| 313: Not an error 316: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-stats.stdout.txt 316: -- REGEX is AVE *([-0-9.]*) 316: -- LOWER_THRESH is -746.0 316: -- UPPER_THRESH is -744.5 316: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| 316: -- PARSED_VALUE=|-745.347717| 316: Not an error 310: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.stdout.txt 310: -- REGEX is VF_AVG +[^ ] +([-0-9.]*) 310: -- LOWER_THRESH is 31.85 310: -- UPPER_THRESH is 35.95 310: -- PARSED VALUE=|VF_MAX = 109.365 VF_AVG = 31.9237| 310: -- PARSED_VALUE=|31.9237| 310: Not an error 319: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-stats.stdout.txt 319: -- REGEX is AVE *([-0-9.]*) 319: -- LOWER_THRESH is -746.0 319: -- UPPER_THRESH is -744.5 319: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| 319: -- PARSED_VALUE=|-745.347717| 319: Not an error 322: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-stats.stdout.txt 322: -- REGEX is AVE *([-0-9.]*) 322: -- LOWER_THRESH is -746.0 322: -- UPPER_THRESH is -744.5 322: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| 322: -- PARSED_VALUE=|-745.347717| 322: Not an error 325: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-stats.stdout.txt 325: -- REGEX is AVE *([-0-9.]*) 325: -- LOWER_THRESH is -746.0 325: -- UPPER_THRESH is -744.5 325: -- PARSED VALUE=|MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| 325: -- PARSED_VALUE=|-745.347717| 325: Not an error 328: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-stats.stdout.txt 328: -- REGEX is AVE *([-0-9.]*) 328: -- LOWER_THRESH is -746.0 328: -- UPPER_THRESH is -744.5 328: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| 328: -- PARSED_VALUE=|-745.347717| 328: Not an error 465/578 Test #308: plm-reg-itk-demons-logd-check-1 ....... Passed 0.12 sec test 334 Start 334: plm-bsp-mse-q-stats 334: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-q-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 334: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 334: Test timeout computed to be: 1500 466/578 Test #310: plm-reg-itk-demons-sym-logd-check-1 ... Passed 0.12 sec test 336 Start 336: plm-bsp-mse-r-stats 336: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-r-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 336: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 336: Test timeout computed to be: 1500 467/578 Test #313: plm-bsp-mse-c-check ................... Passed 0.12 sec test 339 Start 339: plm-bsp-mi-c-check 339: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-114.0" "-DUPPER_THRESH=-113.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 339: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 339: Test timeout computed to be: 1500 468/578 Test #316: plm-bsp-mse-g-check ................... Passed 0.12 sec test 342 Start 342: plm-bsp-mi-c-2-check 342: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-129.5" "-DUPPER_THRESH=-128.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 342: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 342: Test timeout computed to be: 1500 469/578 Test #319: plm-bsp-mse-h-check ................... Passed 0.12 sec test 345 Start 345: plm-bsp-mi-k-check 345: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-114.0" "-DUPPER_THRESH=-113.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 345: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 345: Test timeout computed to be: 1500 470/578 Test #322: plm-bsp-mse-i-check ................... Passed 0.12 sec test 348 Start 348: plm-bsp-gm-k-check 348: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-122.5" "-DUPPER_THRESH=-121.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 348: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 348: Test timeout computed to be: 1500 471/578 Test #325: plm-bsp-mse-k-check ................... Passed 0.12 sec test 350 Start 350: plm-bsp-sm-multi-a-stats 350: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-sm-multi-a-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 350: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 350: Test timeout computed to be: 1500 472/578 Test #328: plm-bsp-mse-l-check ................... Passed 0.12 sec test 353 Start 353: plm-bsp-openmp-check 353: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-openmp-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 353: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 353: Test timeout computed to be: 1500 330: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 330: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o-img.mha 330: EXPECTED_ERRNO is 332: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 332: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p-img.mha 332: EXPECTED_ERRNO is 246: RETVAL: 0 246: STDOUT: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-c.mha 246: 246: STDERR: 246: Not an error 334: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 334: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q-img.mha 334: EXPECTED_ERRNO is 336: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 336: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r-img.mha 336: EXPECTED_ERRNO is 339: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-stats.stdout.txt 339: -- REGEX is AVE *([-0-9.]*) 339: -- LOWER_THRESH is -114.0 339: -- UPPER_THRESH is -113.0 339: -- PARSED VALUE=|MIN -998.614563 AVE -113.473007 MAX -0.004266 NONZERO 54872 NUMVOX 54872| 339: -- PARSED_VALUE=|-113.473007| 339: Not an error 473/578 Test #339: plm-bsp-mi-c-check .................... Passed 0.06 sec test 355 Start 355: plm-bsp-resume-stats 355: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-resume-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume-img.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 355: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 355: Test timeout computed to be: 1500 342: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-stats.stdout.txt 342: -- REGEX is AVE *([-0-9.]*) 342: -- LOWER_THRESH is -129.5 342: -- UPPER_THRESH is -128.5 342: -- PARSED VALUE=|MIN -991.894104 AVE -128.919357 MAX 0.000000 NONZERO 48385 NUMVOX 54872| 342: -- PARSED_VALUE=|-128.919357| 342: Not an error 474/578 Test #342: plm-bsp-mi-c-2-check .................. Passed 0.06 sec test 357 Start 357: plm-bsp-logfile-check 357: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile-logfile.txt" "-DREGEX=\[.*, 5] MSE *([-0-9.]*)" "-DLOWER_THRESH=281.5" "-DUPPER_THRESH=282.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 357: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 357: Test timeout computed to be: 1500 345: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-stats.stdout.txt 345: -- REGEX is AVE *([-0-9.]*) 345: -- LOWER_THRESH is -114.0 345: -- UPPER_THRESH is -113.0 345: -- PARSED VALUE=|MIN -998.614563 AVE -113.473007 MAX -0.004266 NONZERO 54872 NUMVOX 54872| 345: -- PARSED_VALUE=|-113.473007| 345: Not an error 475/578 Test #345: plm-bsp-mi-k-check .................... Passed 0.06 sec test 360 Start 360: plm-bsp-ushort-check 360: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=106.6" "-DUPPER_THRESH=107.6" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 360: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 360: Test timeout computed to be: 1500 476/578 Test #246: plm-dmap-c ............................ Passed 0.50 sec test 363 Start 363: plm-bsp-double-check 363: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=107.6" "-DUPPER_THRESH=108.6" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 363: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 363: Test timeout computed to be: 1500 281: RETVAL: 0 281: STDOUT: plastimatch version 1.9.4 281: Usage: plastimatch command [options] 281: Commands: 281: add adjust average bbox boundary 281: crop compare compose convert dice 281: diff dmap dose drr dvh 281: fdk fill filter gamma header 281: intersect jacobian lm-warp mabs mask 281: maximum ml-convert multiply probe register 281: resample scale segment sift stats 281: synth synth-vf threshold thumbnail union 281: warp wed xf-convert xf-invert 281: 281: For detailed usage of a specific command, type: 281: plastimatch command 281: 281: STDERR: 281: Not an error 477/578 Test #281: plm-usage ............................. Passed 0.35 sec test 364 Start 364: plm-bsp-itk-output 364: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-itk-output" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-itk-output.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 364: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 364: Test timeout computed to be: 1500 350: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 350: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a-img.mha 350: EXPECTED_ERRNO is 348: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-stats.stdout.txt 348: -- REGEX is AVE *([-0-9.]*) 348: -- LOWER_THRESH is -122.5 348: -- UPPER_THRESH is -121.5 348: -- PARSED VALUE=|MIN -997.631409 AVE -121.961853 MAX 0.000000 NONZERO 49452 NUMVOX 54872| 348: -- PARSED_VALUE=|-121.961853| 348: Not an error 478/578 Test #348: plm-bsp-gm-k-check .................... Passed 0.09 sec test 367 Start 367: plm-bsp-char-output-check 367: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output-stats.stdout.txt" "-DREGEX=MIN *([-0-9.]*)" "-DLOWER_THRESH=-128.1" "-DUPPER_THRESH=-127.9" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 367: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 367: Test timeout computed to be: 1500 353: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-openmp-stats.stdout.txt 353: -- REGEX is AVE *([-0-9.]*) 353: -- LOWER_THRESH is -746.0 353: -- UPPER_THRESH is -744.5 353: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| 353: -- PARSED_VALUE=|-745.347717| 353: Not an error 479/578 Test #353: plm-bsp-openmp-check .................. Passed 0.08 sec test 371 Start 371: plm-bsp-regularize-none-check 371: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-stats.stdout.txt" "-DREGEX=MINJAC *([-0-9.]*)" "-DLOWER_THRESH=0.31" "-DUPPER_THRESH=0.32" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 371: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 371: Test timeout computed to be: 1500 355: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 355: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume-img.mha 355: EXPECTED_ERRNO is 357: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile-logfile.txt 357: -- REGEX is \[.*, 5] MSE *([-0-9.]*) 357: -- LOWER_THRESH is 281.5 357: -- UPPER_THRESH is 282.5 357: -- PARSED VALUE=|[ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.023 s ]| 357: -- PARSED_VALUE=|282.038| 357: Not an error 360: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-stats.stdout.txt 360: -- REGEX is AVE *([-0-9.]*) 360: -- LOWER_THRESH is 106.6 360: -- UPPER_THRESH is 107.6 360: -- PARSED VALUE=|MIN 0.000000 AVE 107.313034 MAX 997.000000 NONZERO 44294 NUMVOX 54872| 360: -- PARSED_VALUE=|107.313034| 360: Not an error 363: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-stats.stdout.txt 363: -- REGEX is AVE *([-0-9.]*) 363: -- LOWER_THRESH is 107.6 363: -- UPPER_THRESH is 108.6 363: -- PARSED VALUE=|MIN 0.000000 AVE 108.147682 MAX 998.045227 NONZERO 46833 NUMVOX 54872| 363: -- PARSED_VALUE=|108.147682| 363: Not an error 480/578 Test #357: plm-bsp-logfile-check ................. Passed 0.08 sec test 374 Start 374: plm-bsp-regularize-analytic-check 374: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-stats.stdout.txt" "-DREGEX=MINJAC *([-0-9.]*)" "-DLOWER_THRESH=0.415" "-DUPPER_THRESH=0.425" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 374: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 374: Test timeout computed to be: 1500 481/578 Test #360: plm-bsp-ushort-check .................. Passed 0.07 sec test 377 Start 377: plm-bsp-regularize-numeric-check 377: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-stats.stdout.txt" "-DREGEX=MINJAC *([-0-9.]*)" "-DLOWER_THRESH=0.440" "-DUPPER_THRESH=0.445" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 377: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 377: Test timeout computed to be: 1500 482/578 Test #363: plm-bsp-double-check .................. Passed 0.07 sec test 378 Start 378: plm-bsp-landmark-a 378: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 378: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 378: Test timeout computed to be: 1500 367: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output-stats.stdout.txt 367: -- REGEX is MIN *([-0-9.]*) 367: -- LOWER_THRESH is -128.1 367: -- UPPER_THRESH is -127.9 367: -- PARSED VALUE=|MIN -128.000000 AVE -127.132690 MAX 0.000000 NONZERO 54608 NUMVOX 54872| 367: -- PARSED_VALUE=|-128.000000| 367: Not an error 483/578 Test #367: plm-bsp-char-output-check ............. Passed 0.06 sec test 381 Start 381: plm-bsp-landmark-b-check 381: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 381: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 381: Test timeout computed to be: 1500 364: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 364: PARMS is /build/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-itk-output.txt 364: EXPECTED_ERRNO is 374: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-stats.stdout.txt 374: -- REGEX is MINJAC *([-0-9.]*) 374: -- LOWER_THRESH is 0.415 374: -- UPPER_THRESH is 0.425 374: -- PARSED VALUE=|Jacobian: MINJAC 0.419027 MAXJAC 1.04996| 374: -- PARSED_VALUE=|0.419027| 374: Not an error 484/578 Test #374: plm-bsp-regularize-analytic-check ..... Passed 0.04 sec test 384 Start 384: plm-bsp-landmark-c-check 384: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 384: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 384: Test timeout computed to be: 1500 371: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-stats.stdout.txt 371: -- REGEX is MINJAC *([-0-9.]*) 371: -- LOWER_THRESH is 0.31 371: -- UPPER_THRESH is 0.32 371: -- PARSED VALUE=|Jacobian: MINJAC 0.315393 MAXJAC 1.06557| 371: -- PARSED_VALUE=|0.315393| 371: Not an error 485/578 Test #371: plm-bsp-regularize-none-check ......... Passed 0.08 sec test 387 Start 387: plm-bsp-landmark-d-check 387: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 387: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 387: Test timeout computed to be: 1500 377: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-stats.stdout.txt 377: -- REGEX is MINJAC *([-0-9.]*) 377: -- LOWER_THRESH is 0.440 377: -- UPPER_THRESH is 0.445 377: -- PARSED VALUE=|Jacobian: MINJAC 0.443734 MAXJAC 1.03502| 377: -- PARSED_VALUE=|0.443734| 377: Not an error 378: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 378: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-a.txt 378: EXPECTED_ERRNO is 381: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-stats.stdout.txt 381: -- REGEX is AVE *([-0-9.]*) 381: -- LOWER_THRESH is -991.5 381: -- UPPER_THRESH is -991.0 381: -- PARSED VALUE=|MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872| 381: -- PARSED_VALUE=|-991.355164| 381: Not an error 486/578 Test #377: plm-bsp-regularize-numeric-check ...... Passed 0.08 sec test 390 Start 390: plm-bsp-landmark-e-check 390: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 390: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 390: Test timeout computed to be: 1500 487/578 Test #381: plm-bsp-landmark-b-check .............. Passed 0.06 sec test 393 Start 393: plm-bsp-dcos-a-check 393: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-816" "-DUPPER_THRESH=-815" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 393: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 393: Test timeout computed to be: 1500 384: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-stats.stdout.txt 384: -- REGEX is AVE *([-0-9.]*) 384: -- LOWER_THRESH is -991.5 384: -- UPPER_THRESH is -991.0 384: -- PARSED VALUE=|MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872| 384: -- PARSED_VALUE=|-991.355164| 384: Not an error 488/578 Test #384: plm-bsp-landmark-c-check .............. Passed 0.07 sec test 396 Start 396: plm-bsp-dcos-b-check 396: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-796.8" "-DUPPER_THRESH=-795.8" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 396: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 396: Test timeout computed to be: 1500 387: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-stats.stdout.txt 387: -- REGEX is AVE *([-0-9.]*) 387: -- LOWER_THRESH is -991.5 387: -- UPPER_THRESH is -991.0 387: -- PARSED VALUE=|MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872| 387: -- PARSED_VALUE=|-991.355164| 387: Not an error 489/578 Test #387: plm-bsp-landmark-d-check .............. Passed 0.08 sec test 399 Start 399: plm-bsp-dcos-c-check 399: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-816" "-DUPPER_THRESH=-815" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 399: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 399: Test timeout computed to be: 1500 390: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-stats.stdout.txt 390: -- REGEX is AVE *([-0-9.]*) 390: -- LOWER_THRESH is -991.5 390: -- UPPER_THRESH is -991.0 390: -- PARSED VALUE=|MIN -1000.000183 AVE -991.396057 MAX 0.000000 NONZERO 54488 NUMVOX 54872| 390: -- PARSED_VALUE=|-991.396057| 390: Not an error 490/578 Test #390: plm-bsp-landmark-e-check .............. Passed 0.06 sec test 402 Start 402: plm-bsp-dcos-d-check 402: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-796.8" "-DUPPER_THRESH=-795.8" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 402: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 402: Test timeout computed to be: 1500 396: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-stats.stdout.txt 396: -- REGEX is AVE *([-0-9.]*) 396: -- LOWER_THRESH is -796.8 396: -- UPPER_THRESH is -795.8 396: -- PARSED VALUE=|MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872| 396: -- PARSED_VALUE=|-796.376221| 396: Not an error 393: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-stats.stdout.txt 393: -- REGEX is AVE *([-0-9.]*) 393: -- LOWER_THRESH is -816 393: -- UPPER_THRESH is -815 393: -- PARSED VALUE=|MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872| 393: -- PARSED_VALUE=|-815.591492| 393: Not an error 491/578 Test #396: plm-bsp-dcos-b-check .................. Passed 0.04 sec test 405 Start 405: plm-bsp-dcos-e-check 405: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-816" "-DUPPER_THRESH=-815" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 405: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 405: Test timeout computed to be: 1500 492/578 Test #393: plm-bsp-dcos-a-check .................. Passed 0.06 sec test 408 Start 408: plm-bsp-dcos-f-check 408: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-796.8" "-DUPPER_THRESH=-795.8" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 408: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 408: Test timeout computed to be: 1500 399: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-stats.stdout.txt 399: -- REGEX is AVE *([-0-9.]*) 399: -- LOWER_THRESH is -816 399: -- UPPER_THRESH is -815 399: -- PARSED VALUE=|MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872| 399: -- PARSED_VALUE=|-815.591492| 399: Not an error 330: RETVAL: 0 330: STDOUT: MIN -999.989990 AVE -743.121460 MAX 0.000000 NONZERO 46674 NUMVOX 54872 330: 330: STDERR: 330: Not an error 402: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-stats.stdout.txt 402: -- REGEX is AVE *([-0-9.]*) 402: -- LOWER_THRESH is -796.8 402: -- UPPER_THRESH is -795.8 402: -- PARSED VALUE=|MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872| 402: -- PARSED_VALUE=|-796.376221| 402: Not an error 493/578 Test #330: plm-bsp-mse-o-stats ................... Passed 0.38 sec test 411 Start 411: plm-reg-multi-a-check 411: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-22" "-DUPPER_THRESH=-18" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 411: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 411: Test timeout computed to be: 1500 494/578 Test #399: plm-bsp-dcos-c-check .................. Passed 0.06 sec test 414 Start 414: plm-reg-multi-b-check 414: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-987" "-DUPPER_THRESH=-984" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 414: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 414: Test timeout computed to be: 1500 495/578 Test #402: plm-bsp-dcos-d-check .................. Passed 0.06 sec test 417 Start 417: plm-reg-dv-itk-translation-check 417: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-467.1" "-DUPPER_THRESH=-366.9" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 417: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 417: Test timeout computed to be: 1500 405: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-stats.stdout.txt 405: -- REGEX is AVE *([-0-9.]*) 405: -- LOWER_THRESH is -816 405: -- UPPER_THRESH is -815 405: -- PARSED VALUE=|MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872| 405: -- PARSED_VALUE=|-815.591492| 405: Not an error 496/578 Test #405: plm-bsp-dcos-e-check .................. Passed 0.06 sec test 418 Start 418: plm-reg-roi-a 418: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-roi-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 418: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 418: Test timeout computed to be: 1500 334: RETVAL: 0 334: STDOUT: MIN -999.989136 AVE -739.933289 MAX 0.000000 NONZERO 46595 NUMVOX 54872 334: 334: STDERR: 334: Not an error 497/578 Test #334: plm-bsp-mse-q-stats ................... Passed 0.39 sec test 419 Start 419: plm-reg-roi-b 419: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-roi-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-b.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 419: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 419: Test timeout computed to be: 1500 408: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-stats.stdout.txt 408: -- REGEX is AVE *([-0-9.]*) 408: -- LOWER_THRESH is -796.8 408: -- UPPER_THRESH is -795.8 408: -- PARSED VALUE=|MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872| 408: -- PARSED_VALUE=|-796.376221| 408: Not an error 498/578 Test #408: plm-bsp-dcos-f-check .................. Passed 0.08 sec test 420 Start 420: plm-reg-roi-c 420: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-roi-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-c.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 420: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 420: Test timeout computed to be: 1500 411: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-stats.stdout.txt 411: -- REGEX is Mean: *([-0-9.]*) 411: -- LOWER_THRESH is -22 411: -- UPPER_THRESH is -18 411: -- PARSED VALUE=|Mean: -20.000 -0.000 -0.000| 411: -- PARSED_VALUE=|-20.000| 411: Not an error 499/578 Test #411: plm-reg-multi-a-check ................. Passed 0.08 sec test 421 Start 421: plm-reg-roi-d 421: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-roi-d" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-d.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 421: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 421: Test timeout computed to be: 1500 417: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-stats.stdout.txt 417: -- REGEX is AVE *([-0-9.]*) 417: -- LOWER_THRESH is -467.1 417: -- UPPER_THRESH is -366.9 417: -- PARSED VALUE=|MIN -999.914246 AVE -467.031616 MAX 1000.000000 NONZERO 54872 NUMVOX 54872| 417: -- PARSED_VALUE=|-467.031616| 417: Not an error 414: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-stats.stdout.txt 414: -- REGEX is AVE *([-0-9.]*) 414: -- LOWER_THRESH is -987 414: -- UPPER_THRESH is -984 414: -- PARSED VALUE=|MIN -1000.000183 AVE -985.762146 MAX 0.000000 NONZERO 54224 NUMVOX 54872| 414: -- PARSED_VALUE=|-985.762146| 414: Not an error 418: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 418: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-a.txt 418: EXPECTED_ERRNO is 419: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 419: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-b.txt 419: EXPECTED_ERRNO is 500/578 Test #414: plm-reg-multi-b-check ................. Passed 0.08 sec test 422 Start 422: plm-reg-roi-e 422: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-roi-e" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-e.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 422: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 422: Test timeout computed to be: 1500 501/578 Test #417: plm-reg-dv-itk-translation-check ...... Passed 0.09 sec test 423 Start 423: plm-reg-stiffness-a 423: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-stiffness-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=register;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-stiffness-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 423: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 423: Test timeout computed to be: 1500 421: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 421: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-d.txt 421: EXPECTED_ERRNO is 350: RETVAL: 0 350: STDOUT: MIN -999.995789 AVE -886.449097 MAX -1.453729 NONZERO 54872 NUMVOX 54872 350: 350: STDERR: 350: Not an error 502/578 Test #350: plm-bsp-sm-multi-a-stats .............. Passed 0.41 sec test 426 Start 426: plm-reg-process-a-check 426: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-491.0" "-DUPPER_THRESH=-490.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 426: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 426: Test timeout computed to be: 1500 420: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 420: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-c.txt 420: EXPECTED_ERRNO is 332: RETVAL: 0 332: STDOUT: MIN -999.989136 AVE -739.933289 MAX 0.000000 NONZERO 46595 NUMVOX 54872 332: 332: STDERR: 332: Not an error 503/578 Test #332: plm-bsp-mse-p-stats ................... Passed 0.50 sec test 429 Start 429: plm-reg-trans-a-check 429: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-661.75" "-DUPPER_THRESH=-661.65" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 429: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 429: Test timeout computed to be: 1500 426: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a-stats.stdout.txt 426: -- REGEX is AVE *([-0-9.]*) 426: -- LOWER_THRESH is -491.0 426: -- UPPER_THRESH is -490.0 426: -- PARSED VALUE=|MIN -500.000000 AVE -490.647552 MAX 0.000000 NONZERO 54871 NUMVOX 54872| 426: -- PARSED_VALUE=|-490.647552| 426: Not an error 504/578 Test #426: plm-reg-process-a-check ............... Passed 0.03 sec test 432 Start 432: plm-reg-trans-b-check 432: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-661.75" "-DUPPER_THRESH=-661.65" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 432: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 432: Test timeout computed to be: 1500 422: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 422: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-e.txt 422: EXPECTED_ERRNO is 423: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 423: PARMS is register;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-stiffness-a.txt 423: EXPECTED_ERRNO is 429: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a-stats.stdout.txt 429: -- REGEX is AVE *([-0-9.]*) 429: -- LOWER_THRESH is -661.75 429: -- UPPER_THRESH is -661.65 429: -- PARSED VALUE=|MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872| 429: -- PARSED_VALUE=|-661.690491| 429: Not an error 432: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b-stats.stdout.txt 432: -- REGEX is AVE *([-0-9.]*) 432: -- LOWER_THRESH is -661.75 432: -- UPPER_THRESH is -661.65 432: -- PARSED VALUE=|MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872| 432: -- PARSED_VALUE=|-661.690491| 432: Not an error 505/578 Test #429: plm-reg-trans-a-check ................. Passed 0.06 sec test 435 Start 435: plm-reg-trans-mi-a-check 435: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-612.75" "-DUPPER_THRESH=-612.60" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 435: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 435: Test timeout computed to be: 1500 506/578 Test #432: plm-reg-trans-b-check ................. Passed 0.06 sec test 438 Start 438: plm-reg-autores-a-check 438: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-597.6" "-DUPPER_THRESH=-597.5" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 438: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 438: Test timeout computed to be: 1500 435: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a-stats.stdout.txt 435: -- REGEX is AVE *([-0-9.]*) 435: -- LOWER_THRESH is -612.75 435: -- UPPER_THRESH is -612.60 435: -- PARSED VALUE=|MIN -999.826416 AVE -612.681030 MAX 0.000000 NONZERO 39701 NUMVOX 54872| 435: -- PARSED_VALUE=|-612.681030| 435: Not an error 438: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a-stats.stdout.txt 438: -- REGEX is AVE *([-0-9.]*) 438: -- LOWER_THRESH is -597.6 438: -- UPPER_THRESH is -597.5 438: -- PARSED VALUE=|MIN -999.770874 AVE -597.535889 MAX 0.000000 NONZERO 38880 NUMVOX 54872| 438: -- PARSED_VALUE=|-597.535889| 438: Not an error 507/578 Test #438: plm-reg-autores-a-check ............... Passed 0.03 sec test 441 Start 441: plm-reg-autores-b-check 441: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-597.5" "-DUPPER_THRESH=-597.4" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 441: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 441: Test timeout computed to be: 1500 508/578 Test #435: plm-reg-trans-mi-a-check .............. Passed 0.05 sec test 442 Start 442: plm-reg-point-dmap-a 442: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-point-dmap-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-point-dmap-a.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 442: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 442: Test timeout computed to be: 1500 336: RETVAL: 0 336: STDOUT: MIN -999.989136 AVE -739.933289 MAX 0.000000 NONZERO 46595 NUMVOX 54872 336: 336: STDERR: 336: Not an error 355: RETVAL: 0 355: STDOUT: MIN -999.977539 AVE -731.734009 MAX 0.000000 NONZERO 46415 NUMVOX 54872 355: 355: STDERR: 355: Not an error 509/578 Test #336: plm-bsp-mse-r-stats ................... Passed 0.60 sec test 445 Start 445: plm-compose-a-warp 445: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-a-warp" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 445: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 445: Test timeout computed to be: 1500 510/578 Test #355: plm-bsp-resume-stats .................. Passed 0.55 sec test 447 Start 447: plm-compose-a-check 447: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=13.75" "-DUPPER_THRESH=13.85" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 447: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 447: Test timeout computed to be: 1500 441: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b-stats.stdout.txt 441: -- REGEX is AVE *([-0-9.]*) 441: -- LOWER_THRESH is -597.5 441: -- UPPER_THRESH is -597.4 441: -- PARSED VALUE=|MIN -999.769348 AVE -597.450806 MAX 0.000000 NONZERO 38880 NUMVOX 54872| 441: -- PARSED_VALUE=|-597.450806| 441: Not an error 511/578 Test #441: plm-reg-autores-b-check ............... Passed 0.05 sec test 449 Start 449: plm-compose-b-warp 449: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-b-warp" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 449: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 449: Test timeout computed to be: 1500 364: RETVAL: 0 364: STDOUT: Loading fixed image [0]: gauss-1.mha 364: Loading moving image [0]: gauss-2.mha 364: Launching registration worker thread 364: Inside registration worker thread 364: Doing registration stage 364: [1] xf_in->m_type = 0, xf_out->m_type = 0 364: RESAMPLE 1 1: (2 2 2), (2 2 2) 364: RESAMPLE 1 1: (2 2 2), (2 2 2) 364: volume_calc_grad complete. 364: bspline_xform_initialize 364: rdims = (2,2,2) 364: vox_per_rgn = (11,11,11) 364: cdims = (5 5 5) 364: Algorithm flavor = h 364: Threading = 0 364: >> Checking JH allocation 364: BSPLINE PARMS 364: max_its = 5 364: max_feval = 5 364: BSPLINE XFORM HEADER 364: vox_per_rgn = 11 11 11 364: roi_offset = 0 0 0 364: roi_dim = 19 19 19 364: img_dc = 1 0 0 0 1 0 0 0 1 364: BST METRICS 364: MET 110100 MSE 1.000000 364: Setting nmax, mmax = 375 21 364: >>> START 364: This problem is unconstrained. 364: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.016 s ] 364: CMIN 0.00 CAVG 0.00 CMAX 0.00 364: LSD 0.00 364: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.020 s ] 364: CMIN -0.07 CAVG 0.01 CMAX 0.68 364: LSD 1.00 364: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.004 s ] 364: CMIN -0.35 CAVG 0.05 CMAX 3.40 364: LSD 5.00 364: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.004 s ] 364: CMIN -1.48 CAVG 0.20 CMAX 14.26 364: LSD 21.00 364: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.004 s ] 364: CMIN -1.74 CAVG 0.44 CMAX 32.50 364: LSD 27.95 364: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.004 s ] 364: CMIN -1.73 CAVG 0.34 CMAX 23.99 364: LSD 13.11 364: [2] xf_out->m_type = 9, xf_in->m_type = 0 364: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 364: bspline_xform_initialize 364: rdims = (2,2,2) 364: vox_per_rgn = (22,22,22) 364: cdims = (5 5 5) 364: ** Registration worker thread finished. 364: Writing transformation ... 364: Load: 0.043828 364: Run: 0.11714 364: Save: 0.0050869 364: Total: 0.166055 364: Finished! 364: 364: STDERR: 364: Not an error 512/578 Test #364: plm-bsp-itk-output .................... Passed 0.54 sec test 451 Start 451: plm-compose-b-check 451: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=13.75" "-DUPPER_THRESH=13.85" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 451: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 451: Test timeout computed to be: 1500 442: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 442: PARMS is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-point-dmap-a.txt 442: EXPECTED_ERRNO is 445: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 445: PARMS is warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha 445: EXPECTED_ERRNO is 449: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 449: PARMS is warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha 449: EXPECTED_ERRNO is 447: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-stats.stdout.txt 447: -- REGEX is Mean: *([-0-9.]*) 447: -- LOWER_THRESH is 13.75 447: -- UPPER_THRESH is 13.85 447: -- PARSED VALUE=|Mean: 13.794 -0.035 -0.034| 447: -- PARSED_VALUE=|13.794| 447: Not an error 513/578 Test #447: plm-compose-a-check ................... Passed 0.06 sec test 453 Start 453: plm-compose-c-warp 453: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-c-warp" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-warp.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 453: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 453: Test timeout computed to be: 1500 451: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-stats.stdout.txt 451: -- REGEX is Mean: *([-0-9.]*) 451: -- LOWER_THRESH is 13.75 451: -- UPPER_THRESH is 13.85 451: -- PARSED VALUE=|Mean: 13.794 -0.035 -0.034| 451: -- PARSED_VALUE=|13.794| 451: Not an error 514/578 Test #451: plm-compose-b-check ................... Passed 0.06 sec test 455 Start 455: plm-compose-c-check 455: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=12.5" "-DUPPER_THRESH=12.6" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 455: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 455: Test timeout computed to be: 1500 453: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 453: PARMS is warp;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha;--output-img;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-warp.mha 453: EXPECTED_ERRNO is 455: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-stats.stdout.txt 455: -- REGEX is Mean: *([-0-9.]*) 455: -- LOWER_THRESH is 12.5 455: -- UPPER_THRESH is 12.6 455: -- PARSED VALUE=|Mean: 12.523 -0.008 -0.008| 455: -- PARSED_VALUE=|12.523| 455: Not an error 515/578 Test #455: plm-compose-c-check ................... Passed 0.05 sec test 458 Start 458: plm-resample-a-check 458: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-879.0" "-DUPPER_THRESH=-878.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 458: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 458: Test timeout computed to be: 1500 458: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a-stats.stdout.txt 458: -- REGEX is AVE *([-0-9.]*) 458: -- LOWER_THRESH is -879.0 458: -- UPPER_THRESH is -878.0 458: -- PARSED VALUE=|MIN -999.857544 AVE -878.686035 MAX -12.873093 NONZERO 6859 NUMVOX 6859| 458: -- PARSED_VALUE=|-878.686035| 458: Not an error 516/578 Test #458: plm-resample-a-check .................. Passed 0.04 sec test 461 Start 461: plm-resample-b-check 461: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-879.0" "-DUPPER_THRESH=-878.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 461: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 461: Test timeout computed to be: 1500 461: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b-stats.stdout.txt 461: -- REGEX is AVE *([-0-9.]*) 461: -- LOWER_THRESH is -879.0 461: -- UPPER_THRESH is -878.0 461: -- PARSED VALUE=|MIN -999.915161 AVE -878.621277 MAX -0.000005 NONZERO 64000 NUMVOX 64000| 461: -- PARSED_VALUE=|-878.621277| 461: Not an error 517/578 Test #461: plm-resample-b-check .................. Passed 0.10 sec test 464 Start 464: plm-resample-c-check 464: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=6.67" "-DUPPER_THRESH=6.74" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 464: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 464: Test timeout computed to be: 1500 464: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-stats.stdout.txt 464: -- REGEX is Mean: *([-0-9.]*) 464: -- LOWER_THRESH is 6.67 464: -- UPPER_THRESH is 6.74 464: -- PARSED VALUE=|Mean: 6.707 -0.405 -0.405| 464: -- PARSED_VALUE=|6.707| 464: Not an error 518/578 Test #464: plm-resample-c-check .................. Passed 0.10 sec test 467 Start 467: plm-scale-a-check 467: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-3.735" "-DUPPER_THRESH=-3.730" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 467: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 467: Test timeout computed to be: 1500 467: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a-stats.stdout.txt 467: -- REGEX is AVE *([-0-9.]*) 467: -- LOWER_THRESH is -3.735 467: -- UPPER_THRESH is -3.730 467: -- PARSED VALUE=|MIN -400.000000 AVE -3.732322 MAX 0.000000 NONZERO 512 NUMVOX 54872| 467: -- PARSED_VALUE=|-3.732322| 467: Not an error 519/578 Test #467: plm-scale-a-check ..................... Passed 0.07 sec test 470 Start 470: plm-scale-vf-a-check 470: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=4.000" "-DUPPER_THRESH=4.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 470: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 470: Test timeout computed to be: 1500 420: RETVAL: 0 420: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha 420: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha 420: Loading fixed roi [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha 420: Launching registration worker thread 420: Inside registration worker thread 420: Doing registration stage 420: [1] xf_in->m_type = 0, xf_out->m_type = 0 420: RESAMPLE 1 1: (2 2 2), (2 2 2) 420: RESAMPLE 1 1: (2 2 2), (2 2 2) 420: volume_calc_grad complete. 420: bspline_xform_initialize 420: rdims = (3,5,3) 420: vox_per_rgn = (5,5,5) 420: cdims = (6 8 6) 420: Algorithm flavor = g 420: Threading = 0 420: Regularization: flavor = c lambda = 0.100000 420: Regularizer initialized 420: >> Checking JH allocation 420: BSPLINE PARMS 420: max_its = 10 420: max_feval = 10 420: BSPLINE XFORM HEADER 420: vox_per_rgn = 5 5 5 420: roi_offset = 0 0 0 420: roi_dim = 15 25 15 420: img_dc = 1 0 0 0 1 0 0 0 1 420: BST METRICS 420: MET 110110 MSE 1.000000 420: Setting nmax, mmax = 864 31 420: >>> START 420: This problem is unconstrained. 420: [ 0, 0] SCORE 0.0000000 NV 1690 GM 0.000 GN 0 [ 0.071 s ] 420: MSE 0.0000000 RM 0.000 [ 0.041 | 0.030 ] 420: CMIN 0.00 CAVG 0.00 CMAX 0.00 420: LSD 0.00 420: * * * 420: 420: Tit = total number of iterations 420: Tnf = total number of function evaluations 420: Tnint = total number of segments explored during Cauchy searches 420: Skip = number of BFGS updates skipped 420: Nact = number of active bounds at final generalized Cauchy point 420: Projg = norm of the final projected gradient 420: F = final function value 420: 420: * * * 420: N Tit Tnf Tnint Skip Nact Projg F 420: 864 0 1 0 0 0 0 0 420: CONVERGENCE: NORM_OF_PROJECTED_GRADIENT_<=_PGTOL 420: Total User time 0 seconds. 420: [2] xf_out->m_type = 9, xf_in->m_type = 0 420: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 420: bspline_xform_initialize 420: rdims = (3,5,3) 420: vox_per_rgn = (10,10,10) 420: cdims = (6 8 6) 420: ** Registration worker thread finished. 420: Writing transformation ... 420: Warping... 420: Running: plm_warp_native 420: Converting input image... 420: Converting xform... 420: bspline_xform_initialize 420: rdims = (3,5,3) 420: vox_per_rgn = (10,10,10) 420: cdims = (6 8 6) 420: Creating output vf... 420: Creating output volume... 420: Running native warper... 420: bspline_warp complete. 420: Back convert to original type... 420: > Convert vf to itk 420: > Conversion complete. 420: plm_warp_native is complete. 420: Saving image... 420: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-c-img.mha 420: Saving vf... 420: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-c-vf.mha 420: Load: 0.083334 420: Run: 0.119857 420: Save: 0.0594199 420: Total: 0.262611 420: Finished! 420: 420: STDERR: 420: Not an error 520/578 Test #420: plm-reg-roi-c ......................... Passed 0.68 sec test 476 Start 476: plm-thumbnail-a-check 476: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=76.85" "-DUPPER_THRESH=76.95" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 476: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 476: Test timeout computed to be: 1500 378: RETVAL: 0 378: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha 378: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha 378: Loading fixed landmarks: /build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv 378: Loading moving landmarks: /build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv 378: Launching registration worker thread 378: Inside registration worker thread 378: Doing registration stage 378: [1] xf_in->m_type = 0, xf_out->m_type = 0 378: RESAMPLE 1 1: (2 2 2), (2 2 2) 378: RESAMPLE 1 1: (2 2 2), (2 2 2) 378: volume_calc_grad complete. 378: bspline_xform_initialize 378: Warning: vox_per_rgn was less than 4. 378: Warning: vox_per_rgn was less than 4. 378: Warning: vox_per_rgn was less than 4. 378: rdims = (5,5,5) 378: vox_per_rgn = (4,4,4) 378: cdims = (8 8 8) 378: Algorithm flavor = h 378: Threading = 0 378: Landmarks: 8 fixed, 8 moving, lambda = 1.000000 378: >> Checking JH allocation 378: Computing landmark grid coordinates 378: image dc=1 0 0 0 1 0 0 0 1 378: image or=-236.842 -236.842 -236.842 378: image dm=19 19 19 378: [0], (-26.2717 -52.1629 46.0528) -> (8.001675 7.017809 10.750006) 378: [1], (65.8702 -52.5436 46.053) -> (11.503067 7.003343 10.750014) 378: [2], (65.8702 52.5439 46.053) -> (11.503067 10.996667 10.750014) 378: [3], (-25.5102 53.6862 46.053) -> (8.030612 11.040074 10.750014) 378: [4], (-25.891 -52.1629 -46.0525) -> (8.016141 7.017809 7.250004) 378: [5], (66.6317 -53.3051 -46.053) -> (11.532004 6.974406 7.249985) 378: [6], (65.8702 53.3054 -46.053) -> (11.503067 11.025604 7.249985) 378: [7], (-25.1295 53.6862 -46.053) -> (8.045078 11.040074 7.249985) 378: BSPLINE PARMS 378: max_its = 5 378: max_feval = 5 378: BSPLINE XFORM HEADER 378: vox_per_rgn = 4 4 4 378: roi_offset = 0 0 0 378: roi_dim = 19 19 19 378: img_dc = 1 0 0 0 1 0 0 0 1 378: BST METRICS 378: MET 110100 MSE 1.000000 378: Setting nmax, mmax = 1536 41 378: >>> START 378: This problem is unconstrained. 378: [ 0, 0] SCORE 3407.677 NV 6859 GM 84.848 GN 25 [ 0.021 s ] 378: MSE 2961.435 LM 446.242 378: CMIN 0.00 CAVG 0.00 CMAX 0.00 378: LSD 0.00 378: [ 0, 1] SCORE 3361.326 NV 6859 GM 83.763 GN 24.7 [ 0.008 s ] 378: MSE 2923.708 LM 437.617 378: CMIN -0.50 CAVG -0.00 CMAX 0.07 378: LSD 1.00 378: [ 0, 2] SCORE 3181.879 NV 6859 GM 79.422 GN 23.5 [ 0.016 s ] 378: MSE 2777.757 LM 404.122 378: CMIN -2.48 CAVG -0.01 CMAX 0.34 378: LSD 5.00 378: [ 0, 3] SCORE 2557.441 NV 6859 GM 62.038 GN 18.9 [ 0.016 s ] 378: MSE 2271.265 LM 286.176 378: CMIN -10.41 CAVG -0.05 CMAX 1.44 378: LSD 21.00 378: [ 1, 4] SCORE 1117.771 NV 6859 GM -1.799 GN 6.83 [ 0.016 s ] 378: MSE 1009.222 LM 108.548 378: CMIN -45.97 CAVG -0.19 CMAX 12.05 378: LSD 76.81 378: [ 2, 5] SCORE 848.407 NV 6859 GM -12.697 GN 4.53 [ 0.017 s ] 378: MSE 667.771 LM 180.635 378: CMIN -54.81 CAVG -0.22 CMAX 17.65 378: LSD 34.30 378: [2] xf_out->m_type = 9, xf_in->m_type = 0 378: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 378: bspline_xform_initialize 378: rdims = (5,5,5) 378: vox_per_rgn = (8,8,8) 378: cdims = (8 8 8) 378: ** Registration worker thread finished. 378: Writing transformation ... 378: Warping... 378: Running: plm_warp_native 378: Converting input image... 378: Converting xform... 378: bspline_xform_initialize 378: rdims = (5,5,5) 378: vox_per_rgn = (8,8,8) 378: cdims = (8 8 8) 378: Creating output vf... 378: Creating output volume... 378: Running native warper... 378: bspline_warp complete. 378: Back convert to original type... 378: > Convert vf to itk 378: > Conversion complete. 378: plm_warp_native is complete. 378: Saving image... 378: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-a-img.mha 378: Saving warped landmarks... 378: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-a-warped.fcsv 378: Saving vf... 378: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-a-vf.mha 378: Load: 0.174903 378: Run: 0.144262 378: Save: 0.154322 378: Total: 0.473487 378: Finished! 378: 378: STDERR: 378: Not an error 521/578 Test #378: plm-bsp-landmark-a .................... Passed 0.96 sec test 479 Start 479: plm-thumbnail-b-check 479: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.0" "-DUPPER_THRESH=0.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 479: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 479: Test timeout computed to be: 1500 470: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a-stats.stdout.txt 470: -- REGEX is Mean: *([-0-9.]*) 470: -- LOWER_THRESH is 4.000 470: -- UPPER_THRESH is 4.000 470: -- PARSED VALUE=|Mean: 4.000 0.000 0.000| 470: -- PARSED_VALUE=|4.000| 470: Not an error 522/578 Test #470: plm-scale-vf-a-check .................. Passed 0.10 sec test 482 Start 482: plm-thumbnail-c-check 482: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=8.1" "-DUPPER_THRESH=8.3" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 482: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 482: Test timeout computed to be: 1500 476: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a-stats.stdout.txt 476: -- REGEX is AVE *([-0-9.]*) 476: -- LOWER_THRESH is 76.85 476: -- UPPER_THRESH is 76.95 476: -- PARSED VALUE=|MIN 0.000000 AVE 76.906250 MAX 255.000000 NONZERO 88 NUMVOX 256| 476: -- PARSED_VALUE=|76.906250| 476: Not an error 523/578 Test #476: plm-thumbnail-a-check ................. Passed 0.13 sec test 485 Start 485: plm-intersect-check 485: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=729" "-DUPPER_THRESH=729" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 485: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 485: Test timeout computed to be: 1500 479: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b-stats.stdout.txt 479: -- REGEX is AVE *([-0-9.]*) 479: -- LOWER_THRESH is 0.0 479: -- UPPER_THRESH is 0.0 479: -- PARSED VALUE=|MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 256| 479: -- PARSED_VALUE=|0.000000| 479: Not an error 482: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c-stats.stdout.txt 482: -- REGEX is AVE *([-0-9.]*) 482: -- LOWER_THRESH is 8.1 482: -- UPPER_THRESH is 8.3 482: -- PARSED VALUE=|MIN 0.000000 AVE 8.203125 MAX 119.000000 NONZERO 32 NUMVOX 256| 482: -- PARSED_VALUE=|8.203125| 482: Not an error 524/578 Test #479: plm-thumbnail-b-check ................. Passed 0.09 sec test 488 Start 488: plm-union-check 488: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1271" "-DUPPER_THRESH=1271" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 488: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 488: Test timeout computed to be: 1500 525/578 Test #482: plm-thumbnail-c-check ................. Passed 0.08 sec test 491 Start 491: plm-threshold-a-check 491: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.306" "-DUPPER_THRESH=0.308" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 491: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 491: Test timeout computed to be: 1500 485: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect-stats.stdout.txt 485: -- REGEX is NONZERO *([-0-9.]*) 485: -- LOWER_THRESH is 729 485: -- UPPER_THRESH is 729 485: -- PARSED VALUE=|MIN 0.000000 AVE 0.013285 MAX 1.000000 NONZERO 729 NUMVOX 54872| 485: -- PARSED_VALUE=|729| 485: Not an error 526/578 Test #485: plm-intersect-check ................... Passed 0.11 sec test 494 Start 494: plm-threshold-b-check 494: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.670" "-DUPPER_THRESH=0.672" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 494: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 494: Test timeout computed to be: 1500 488: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union-stats.stdout.txt 488: -- REGEX is NONZERO *([-0-9.]*) 488: -- LOWER_THRESH is 1271 488: -- UPPER_THRESH is 1271 488: -- PARSED VALUE=|MIN 0.000000 AVE 0.023163 MAX 1.000000 NONZERO 1271 NUMVOX 54872| 488: -- PARSED_VALUE=|1271| 488: Not an error 527/578 Test #488: plm-union-check ....................... Passed 0.11 sec test 497 Start 497: plm-threshold-c-check 497: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1206" "-DUPPER_THRESH=1206" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 497: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 497: Test timeout computed to be: 1500 491: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a-stats.stdout.txt 491: -- REGEX is AVE *([-0-9.]*) 491: -- LOWER_THRESH is 0.306 491: -- UPPER_THRESH is 0.308 491: -- PARSED VALUE=|MIN 0.000000 AVE 0.306732 MAX 1.000000 NONZERO 16831 NUMVOX 54872| 491: -- PARSED_VALUE=|0.306732| 491: Not an error 528/578 Test #491: plm-threshold-a-check ................. Passed 0.10 sec test 498 Start 498: plm-warp-pointset-a 498: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-pointset-a" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-a.fcsv" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 498: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 498: Test timeout computed to be: 1500 494: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b-stats.stdout.txt 494: -- REGEX is AVE *([-0-9.]*) 494: -- LOWER_THRESH is 0.670 494: -- UPPER_THRESH is 0.672 494: -- PARSED VALUE=|MIN 0.000000 AVE 0.671290 MAX 1.000000 NONZERO 36835 NUMVOX 54872| 494: -- PARSED_VALUE=|0.671290| 494: Not an error 529/578 Test #494: plm-threshold-b-check ................. Passed 0.11 sec test 499 Start 499: plm-warp-pointset-b 499: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-pointset-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-b.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 499: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 499: Test timeout computed to be: 1500 445: RETVAL: 0 445: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha) 445: Setting PIH from VF 445: PIH is: 445: Origin = -25.0000 -25.0000 -25.0000 445: Size = 38 38 38 445: Spacing = 1.3158 1.3158 1.3158 445: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 445: Rt_study_warp: Warping m_img 445: plm_warp_itk: xform_to_itk_vf 445: plm_warp_itk: convert_to_itk 445: plm_warp_itk: warping... 445: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha) 445: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha 445: Rt_study_warp: warp and save ss. 445: Finished! 445: 445: STDERR: 445: Not an error 497: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c-stats.stdout.txt 497: -- REGEX is NONZERO *([-0-9.]*) 497: -- LOWER_THRESH is 1206 497: -- UPPER_THRESH is 1206 497: -- PARSED VALUE=|MIN 0.000000 AVE 0.021978 MAX 1.000000 NONZERO 1206 NUMVOX 54872| 497: -- PARSED_VALUE=|1206| 497: Not an error 498: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 498: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-a.fcsv 498: EXPECTED_ERRNO is 530/578 Test #445: plm-compose-a-warp .................... Passed 0.84 sec test 500 Start 500: plm-warp-pointset-c 500: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-pointset-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-landmark-c.fcsv" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 500: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 500: Test timeout computed to be: 1500 419: RETVAL: 0 419: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha 419: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha 419: Loading fixed roi [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha 419: Loading moving roi [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha 419: Launching registration worker thread 419: Inside registration worker thread 419: Doing registration stage 419: [1] xf_in->m_type = 0, xf_out->m_type = 0 419: [2] xf_out->m_type = 1, xf_in->m_type = 0 419: Doing registration stage 419: [1] xf_in->m_type = 1, xf_out->m_type = 0 419: Fixed image for this stage: 419: Dim = 15 25 15 419: Origin = -14 -24 -14 419: Spacing = 2 2 2 419: Direction Cosines = 419: 1 0 0 419: 0 1 0 419: 0 0 1 419: Moving image for this stage: 419: Dim = 15 25 15 419: Origin = -14 -24 -14 419: Spacing = 2 2 2 419: Direction Cosines = 419: 1 0 0 419: 0 1 0 419: 0 0 1 419: Initial Parameters = [0, 0, 0] 419: Starting ITK registration 419: StartEvent: [0, 0, 0] 419: EndEvent: [0, 0, 0] 419: RegularStepGradientDescentOptimizer: Gradient magnitude tolerance met after 0 iterations. Gradient magnitude (0) is less than gradient magnitude tolerance (0.0001). 419: ITK registration complete 419: [2] xf_out->m_type = 1, xf_in->m_type = 1 419: ** Registration worker thread finished. 419: Writing transformation ... 419: Warping... 419: plm_warp_itk: xform_to_itk_vf 419: plm_warp_itk: convert_to_itk 419: plm_warp_itk: warping... 419: Saving image... 419: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-b-img.mha 419: Saving vf... 419: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-b-vf.mha 419: Load: 0.277391 419: Run: 0.131946 419: Save: 0.0394979 419: Total: 0.448835 419: Finished! 419: 419: STDERR: 419: Not an error 531/578 Test #419: plm-reg-roi-b ......................... Passed 1.08 sec test 503 Start 503: plm-warp-a-check 503: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=5.77" "-DUPPER_THRESH=5.78" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 503: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 503: Test timeout computed to be: 1500 532/578 Test #497: plm-threshold-c-check ................. Passed 0.14 sec test 506 Start 506: plm-warp-b-check-1 506: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-stats-1.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=5.77" "-DUPPER_THRESH=5.78" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 506: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 506: Test timeout computed to be: 1500 418: RETVAL: 0 418: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10.mha 418: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11.mha 418: Loading fixed roi [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha 418: Loading moving roi [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha 418: Launching registration worker thread 418: Inside registration worker thread 418: Doing registration stage 418: [1] xf_in->m_type = 0, xf_out->m_type = 0 418: RESAMPLE 1 1: (1 1 1), (1 1 1) 418: RESAMPLE 1 1: (1 1 1), (1 1 1) 418: volume_calc_grad complete. 418: bspline_xform_initialize 418: Warning: vox_per_rgn was less than 4. 418: Warning: vox_per_rgn was less than 4. 418: Warning: vox_per_rgn was less than 4. 418: rdims = (10,10,10) 418: vox_per_rgn = (4,4,4) 418: cdims = (13 13 13) 418: Algorithm flavor = h 418: Threading = 0 418: >> Checking JH allocation 418: >> Performing JH allocation 418: BSPLINE PARMS 418: max_its = 5 418: max_feval = 5 418: BSPLINE XFORM HEADER 418: vox_per_rgn = 4 4 4 418: roi_offset = 0 0 0 418: roi_dim = 38 38 38 418: img_dc = 1 0 0 0 1 0 0 0 1 418: BST METRICS 418: MET 110111 MI 1.000000 418: >> Performing JH initialization 418: Setting nmax, mmax = 6591 83 418: >>> START 418: This problem is unconstrained. 418: [ 0, 0] MI -0.0060547 NV 729 GM 0.008 GN 0.0011 [ 0.097 s ] 418: CMIN 0.01 CAVG 0.01 CMAX 0.01 418: LSD 0.00 418: [ 0, 1] MI -0.0496013 NV 569 GM -0.020 GN 0.00349 [ 0.103 s ] 418: CMIN -0.30 CAVG 0.01 CMAX 0.04 418: LSD 1.00 418: [ 1, 2] MI -0.0061482 NV 729 GM 0.000 GN 0.00024 [ 0.090 s ] 418: CMIN -0.30 CAVG 0.01 CMAX 0.05 418: LSD 0.25 418: [ 1, 3] MI -0.0496042 NV 569 GM -0.020 GN 0.00349 [ 0.080 s ] 418: CMIN -0.30 CAVG 0.01 CMAX 0.04 418: LSD 0.00 418: [ 1, 4] MI -0.0496071 NV 569 GM -0.020 GN 0.00349 [ 0.076 s ] 418: CMIN -0.30 CAVG 0.01 CMAX 0.04 418: LSD 0.00 418: [ 1, 5] MI -0.0020808 NV 629 GM -0.002 GN 0.000318 [ 0.064 s ] 418: CMIN -0.30 CAVG 0.01 CMAX 0.05 418: LSD 0.12 418: [2] xf_out->m_type = 9, xf_in->m_type = 0 418: ** Registration worker thread finished. 418: Writing transformation ... 418: Warping... 418: Running: plm_warp_native 418: Converting input image... 418: Converting xform... 418: bspline_xform_initialize 418: rdims = (10,10,10) 418: vox_per_rgn = (4,4,4) 418: cdims = (13 13 13) 418: Creating output vf... 418: Creating output volume... 418: Running native warper... 418: bspline_warp complete. 418: Back convert to original type... 418: > Convert vf to itk 418: > Conversion complete. 418: plm_warp_native is complete. 418: Saving image... 418: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-a-img.mha 418: Saving vf... 418: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-a-vf.mha 418: Load: 0.0845881 418: Run: 0.535554 418: Save: 0.116325 418: Total: 0.736467 418: Finished! 418: 418: STDERR: 418: Not an error 533/578 Test #418: plm-reg-roi-a ......................... Passed 1.12 sec test 508 Start 508: plm-warp-b-check-2 508: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-stats-2.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-775.7" "-DUPPER_THRESH=-775.6" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 508: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 508: Test timeout computed to be: 1500 499: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 499: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-b.txt 499: EXPECTED_ERRNO is 500: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 500: PARMS is warp;--xf;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-landmark-c.fcsv 500: EXPECTED_ERRNO is 506: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-stats-1.stdout.txt 506: -- REGEX is Mean: *([-0-9.]*) 506: -- LOWER_THRESH is 5.77 506: -- UPPER_THRESH is 5.78 506: -- PARSED VALUE=|Mean: 5.773 0.002 0.002| 506: -- PARSED_VALUE=|5.773| 506: Not an error 534/578 Test #506: plm-warp-b-check-1 .................... Passed 0.08 sec test 511 Start 511: plm-warp-c-check 511: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=9.2" "-DUPPER_THRESH=9.3" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 511: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 511: Test timeout computed to be: 1500 503: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-stats.stdout.txt 503: -- REGEX is Mean: *([-0-9.]*) 503: -- LOWER_THRESH is 5.77 503: -- UPPER_THRESH is 5.78 503: -- PARSED VALUE=|Mean: 5.773 0.002 0.002| 503: -- PARSED_VALUE=|5.773| 503: Not an error 535/578 Test #503: plm-warp-a-check ...................... Passed 0.12 sec test 514 Start 514: plm-warp-d-check 514: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=9.2" "-DUPPER_THRESH=9.3" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 514: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 514: Test timeout computed to be: 1500 508: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-stats-2.stdout.txt 508: -- REGEX is AVE *([-0-9.]*) 508: -- LOWER_THRESH is -775.7 508: -- UPPER_THRESH is -775.6 508: -- PARSED VALUE=|MIN -999.876892 AVE -775.668274 MAX 0.000000 NONZERO 49099 NUMVOX 54872| 508: -- PARSED_VALUE=|-775.668274| 508: Not an error 536/578 Test #508: plm-warp-b-check-2 .................... Passed 0.11 sec test 517 Start 517: plm-warp-f-check-1 517: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-stats-1.stdout.txt" "-DREGEX=Direction = *[-0-9.]* *[-0-9.]* *([-0-9.]*)" "-DLOWER_THRESH=-0.379" "-DUPPER_THRESH=-0.378" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 517: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 517: Test timeout computed to be: 1500 514: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-stats.stdout.txt 514: -- REGEX is AVE *([-0-9.]*) 514: -- LOWER_THRESH is 9.2 514: -- UPPER_THRESH is 9.3 514: -- PARSED VALUE=|MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872| 514: -- PARSED_VALUE=|9.220003| 514: Not an error 421: RETVAL: 0 421: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha 421: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha 421: Loading fixed roi [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-02.mha 421: Launching registration worker thread 421: Inside registration worker thread 421: Doing registration stage 421: [1] xf_in->m_type = 0, xf_out->m_type = 0 421: RESAMPLE 1 1: (2 2 2), (2 2 2) 421: RESAMPLE 1 1: (2 2 2), (2 2 2) 421: volume_calc_grad complete. 421: bspline_xform_initialize 421: rdims = (3,5,3) 421: vox_per_rgn = (5,5,5) 421: cdims = (6 8 6) 421: Algorithm flavor = g 421: Threading = 0 421: Regularization: flavor = c lambda = 0.100000 421: Regularizer initialized 421: >> Checking JH allocation 421: BSPLINE PARMS 421: max_its = 10 421: max_feval = 10 421: BSPLINE XFORM HEADER 421: vox_per_rgn = 5 5 5 421: roi_offset = 0 0 0 421: roi_dim = 15 25 15 421: img_dc = 1 0 0 0 1 0 0 0 1 421: BST METRICS 421: MET 110110 MSE 1.000000 421: Setting nmax, mmax = 864 31 421: >>> START 421: This problem is unconstrained. 421: [ 0, 0] SCORE 66568.047 NV 1690 GM 14792.900 GN 3.94e+03 [ 0.067 s ] 421: MSE 66568.047 RM 0.000 [ 0.035 | 0.032 ] 421: CMIN 0.00 CAVG 0.00 CMAX 0.00 421: LSD 0.00 421: [ 0, 1] SCORE 60779.625 NV 1690 GM 13427.228 GN 3.59e+03 [ 0.080 s ] 421: MSE 60779.609 RM 0.015 [ 0.040 | 0.040 ] 421: CMIN -0.46 CAVG -0.00 CMAX 0.10 421: LSD 1.00 421: [ 0, 2] SCORE 43202.340 NV 1690 GM 16992.866 GN 4.39e+03 [ 0.068 s ] 421: MSE 43201.965 RM 0.376 [ 0.044 | 0.024 ] 421: CMIN -2.30 CAVG -0.02 CMAX 0.50 421: LSD 5.00 421: [ 0, 3] SCORE 11325.080 NV 1619 GM -932.100 GN 1.45e+03 [ 0.072 s ] 421: MSE 11318.452 RM 6.628 [ 0.044 | 0.028 ] 421: CMIN -9.66 CAVG -0.09 CMAX 2.11 421: LSD 21.00 421: [ 1, 4] SCORE 5165.491 NV 1647 GM 1195.560 GN 605 [ 0.072 s ] 421: MSE 5160.030 RM 5.461 [ 0.032 | 0.040 ] 421: CMIN -7.99 CAVG -0.09 CMAX 1.46 421: LSD 4.95 421: [ 2, 5] SCORE 5370.420 NV 1649 GM -3582.381 GN 910 [ 0.047 s ] 421: MSE 5363.509 RM 6.911 [ 0.032 | 0.016 ] 421: CMIN -8.90 CAVG -0.10 CMAX 1.42 421: LSD 5.04 421: [ 2, 6] SCORE 4305.869 NV 1649 GM -1305.969 GN 395 [ 0.054 s ] 421: MSE 4299.880 RM 5.989 [ 0.028 | 0.026 ] 421: CMIN -7.75 CAVG -0.10 CMAX 1.44 421: LSD 2.37 421: [ 3, 7] SCORE 4280.987 NV 1653 GM 1734.354 GN 474 [ 0.064 s ] 421: MSE 4275.453 RM 5.534 [ 0.031 | 0.033 ] 421: CMIN -7.64 CAVG -0.09 CMAX 1.40 421: LSD 1.62 421: [ 4, 8] SCORE 4194.305 NV 1651 GM 205.505 GN 129 [ 0.062 s ] 421: MSE 4188.512 RM 5.794 [ 0.026 | 0.035 ] 421: CMIN -7.74 CAVG -0.10 CMAX 1.43 421: LSD 0.60 421: [ 5, 9] SCORE 4196.242 NV 1645 GM 115.154 GN 112 [ 0.058 s ] 421: MSE 4190.442 RM 5.800 [ 0.020 | 0.038 ] 421: CMIN -7.66 CAVG -0.10 CMAX 1.43 421: LSD 0.26 421: [ 5, 10] SCORE 4195.648 NV 1649 GM 201.989 GN 124 [ 0.059 s ] 421: MSE 4189.854 RM 5.795 [ 0.017 | 0.041 ] 421: CMIN -7.72 CAVG -0.10 CMAX 1.43 421: LSD 0.06 421: [2] xf_out->m_type = 9, xf_in->m_type = 0 421: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 421: bspline_xform_initialize 421: rdims = (3,5,3) 421: vox_per_rgn = (10,10,10) 421: cdims = (6 8 6) 421: ** Registration worker thread finished. 421: Writing transformation ... 421: Warping... 421: Running: plm_warp_native 421: Converting input image... 421: Converting xform... 421: bspline_xform_initialize 421: rdims = (3,5,3) 421: vox_per_rgn = (10,10,10) 421: cdims = (6 8 6) 421: Creating output vf... 421: Creating output volume... 421: Running native warper... 421: bspline_warp complete. 421: Back convert to original type... 421: > Convert vf to itk 421: > Conversion complete. 421: plm_warp_native is complete. 421: Saving image... 421: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-d-img.mha 421: Saving vf... 421: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-d-vf.mha 421: Load: 0.0739372 421: Run: 0.743018 421: Save: 0.096545 421: Total: 0.9135 421: Finished! 421: 421: STDERR: 421: Not an error 511: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-stats.stdout.txt 511: -- REGEX is AVE *([-0-9.]*) 511: -- LOWER_THRESH is 9.2 511: -- UPPER_THRESH is 9.3 511: -- PARSED VALUE=|MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872| 511: -- PARSED_VALUE=|9.220003| 511: Not an error 537/578 Test #514: plm-warp-d-check ...................... Passed 0.06 sec test 520 Start 520: plm-warp-g-check-1 520: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-764.0" "-DUPPER_THRESH=-763.6" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 520: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 520: Test timeout computed to be: 1500 517: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-stats-1.stdout.txt 517: -- REGEX is Direction = *[-0-9.]* *[-0-9.]* *([-0-9.]*) 517: -- LOWER_THRESH is -0.379 517: -- UPPER_THRESH is -0.378 517: -- PARSED VALUE=|Direction = 0.9254 0.0180 -0.3785 0.1632 0.8826 0.4410 0.3420 -0.4698 0.8138| 517: -- PARSED_VALUE=|-0.3785| 517: Not an error 538/578 Test #421: plm-reg-roi-d ......................... Passed 1.24 sec test 523 Start 523: plm-warp-h-check-1 523: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=113.5" "-DUPPER_THRESH=114.0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 523: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 523: Test timeout computed to be: 1500 539/578 Test #511: plm-warp-c-check ...................... Passed 0.12 sec test 526 Start 526: plm-warp-i-check-1 526: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=114.4" "-DUPPER_THRESH=114.7" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 526: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 526: Test timeout computed to be: 1500 540/578 Test #517: plm-warp-f-check-1 .................... Passed 0.08 sec test 529 Start 529: plm-xf-convert-c 529: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-c-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 529: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 529: Test timeout computed to be: 1500 453: RETVAL: 0 453: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha) 453: Setting PIH from VF 453: PIH is: 453: Origin = -25.0000 -25.0000 -25.0000 453: Size = 38 38 38 453: Spacing = 1.3158 1.3158 1.3158 453: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 453: Rt_study_warp: Warping m_img 453: plm_warp_itk: xform_to_itk_vf 453: plm_warp_itk: convert_to_itk 453: plm_warp_itk: warping... 453: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-warp.mha) 453: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-warp.mha 453: Rt_study_warp: warp and save ss. 453: Finished! 453: 453: STDERR: 453: Not an error 541/578 Test #453: plm-compose-c-warp .................... Passed 1.01 sec test 533 Start 533: plm-xf-convert-d-warp-1-check 533: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-745.8" "-DUPPER_THRESH=-744.8" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 533: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 533: Test timeout computed to be: 1500 523: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-stats-1.stdout.txt 523: -- REGEX is AVE *([-0-9.]*) 523: -- LOWER_THRESH is 113.5 523: -- UPPER_THRESH is 114.0 523: -- PARSED VALUE=|MIN 0.000000 AVE 113.750511 MAX 996.000000 NONZERO 42867 NUMVOX 54872| 523: -- PARSED_VALUE=|113.750511| 523: Not an error 542/578 Test #523: plm-warp-h-check-1 .................... Passed 0.08 sec test 536 Start 536: plm-xf-convert-d-warp-2-check 536: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-751.0" "-DUPPER_THRESH=-744.8" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 536: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 536: Test timeout computed to be: 1500 526: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-stats-1.stdout.txt 526: -- REGEX is AVE *([-0-9.]*) 526: -- LOWER_THRESH is 114.4 526: -- UPPER_THRESH is 114.7 526: -- PARSED VALUE=|MIN 0.000000 AVE 114.545189 MAX 996.552368 NONZERO 43320 NUMVOX 54872| 526: -- PARSED_VALUE=|114.545189| 520: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-stats-1.stdout.txt 520: -- REGEX is AVE *([-0-9.]*) 520: -- LOWER_THRESH is -764.0 520: -- UPPER_THRESH is -763.6 520: -- PARSED VALUE=|MIN -1000.000000 AVE -763.820862 MAX 0.000000 NONZERO 42085 NUMVOX 54872| 520: -- PARSED_VALUE=|-763.820862| 520: Not an error 529: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 529: PARMS is xf-convert;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-c-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125 529: EXPECTED_ERRNO is 543/578 Test #520: plm-warp-g-check-1 .................... Passed 0.12 sec test 537 Start 537: plm-xf-convert-e 537: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-e" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-e;--fixed-rcs;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom;--moving-rcs;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 537: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 537: Test timeout computed to be: 1500 526: Not an error 449: RETVAL: 0 449: STDOUT: Loading xform (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha) 449: Setting PIH from VF 449: PIH is: 449: Origin = -25.0000 -25.0000 -25.0000 449: Size = 38 38 38 449: Spacing = 1.3158 1.3158 1.3158 449: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 449: Rt_study_warp: Warping m_img 449: plm_warp_itk: xform_to_itk_vf 449: plm_warp_itk: convert_to_itk 449: plm_warp_itk: warping... 449: Rt_study_warp: Saving m_img (/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha) 449: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha 449: Rt_study_warp: warp and save ss. 449: Finished! 449: 449: STDERR: 544/578 Test #526: plm-warp-i-check-1 .................... Passed 0.10 sec test 538 Start 538: plm-xf-convert-f 538: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-f" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-f;--fixed-image;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--moving-image;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 538: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 538: Test timeout computed to be: 1500 449: Not an error 545/578 Test #449: plm-compose-b-warp .................... Passed 1.16 sec test 539 Start 539: plm-xf-convert-g 539: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-g" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-vf.nrrd;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-g;--fixed-rcs;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom;--moving-rcs;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 539: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 539: Test timeout computed to be: 1500 533: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1-stats.stdout.txt 533: -- REGEX is AVE *([-0-9.]*) 533: -- LOWER_THRESH is -745.8 533: -- UPPER_THRESH is -744.8 533: -- PARSED VALUE=|MIN -999.979248 AVE -745.231567 MAX 0.000000 NONZERO 5851 NUMVOX 6859| 533: -- PARSED_VALUE=|-745.231567| 533: Not an error 546/578 Test #533: plm-xf-convert-d-warp-1-check ......... Passed 0.11 sec test 542 Start 542: plm-xf-convert-h-check 542: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h-stats.stdout.txt" "-DREGEX=Min: *([-0-9.]*)" "-DLOWER_THRESH=20" "-DUPPER_THRESH=20" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 542: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 542: Test timeout computed to be: 1500 536: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2-stats.stdout.txt 536: -- REGEX is AVE *([-0-9.]*) 536: -- LOWER_THRESH is -751.0 536: -- UPPER_THRESH is -744.8 536: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| 536: -- PARSED_VALUE=|-745.347717| 536: Not an error 547/578 Test #536: plm-xf-convert-d-warp-2-check ......... Passed 0.09 sec test 545 Start 545: plm-xf-convert-i-check 545: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-stats.stdout.txt" "-DREGEX=Min: *([-0-9.]*)" "-DLOWER_THRESH=7.155" "-DUPPER_THRESH=7.165" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 545: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 545: Test timeout computed to be: 1500 537: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 537: PARMS is xf-convert;--filenames-without-uids;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-e;--fixed-rcs;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom;--moving-rcs;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom 537: EXPECTED_ERRNO is 538: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 538: PARMS is xf-convert;--filenames-without-uids;--input;/build/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-f;--fixed-image;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--moving-image;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha 538: EXPECTED_ERRNO is 539: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 539: PARMS is xf-convert;--filenames-without-uids;--input;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-vf.nrrd;--output-dicom;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-g;--fixed-rcs;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom;--moving-rcs;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom 539: EXPECTED_ERRNO is 545: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-stats.stdout.txt 545: -- REGEX is Min: *([-0-9.]*) 545: -- LOWER_THRESH is 7.155 545: -- UPPER_THRESH is 7.165 545: -- PARSED VALUE=|Min: 7.161 -0.245 -0.245| 545: -- PARSED_VALUE=|7.161| 545: Not an error 542: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h-stats.stdout.txt 542: -- REGEX is Min: *([-0-9.]*) 542: -- LOWER_THRESH is 20 542: -- UPPER_THRESH is 20 542: -- PARSED VALUE=|Min: 20.000 0.000 0.000| 542: -- PARSED_VALUE=|20.000| 542: Not an error 548/578 Test #545: plm-xf-convert-i-check ................ Passed 0.10 sec test 548 Start 548: xf-invert-vf-zero-1-check 548: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1-stats.stdout.txt" "-DREGEX=Mean abs: *([-0-9.]*)" "-DLOWER_THRESH=0.000" "-DUPPER_THRESH=0.000" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 548: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 548: Test timeout computed to be: 1500 549/578 Test #542: plm-xf-convert-h-check ................ Passed 0.14 sec test 551 Start 551: xf-invert-vf-trans-1-check 551: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-10.0" "-DUPPER_THRESH=-9.9" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 551: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 551: Test timeout computed to be: 1500 498: RETVAL: 0 498: STDOUT: bspline_xform_initialize 498: rdims = (5,5,5) 498: vox_per_rgn = (8,8,8) 498: cdims = (8 8 8) 498: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-a.fcsv 498: 498: STDERR: 498: Not an error 550/578 Test #498: plm-warp-pointset-a ................... Passed 0.63 sec test 553 Start 553: xf-invert-vrs-a-check 553: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm" "-DREGEX=^Parameters: *(.*)$" "-DMATCH_STRING=0 0 0 -20 0 0" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckString.cmake" 553: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 553: Test timeout computed to be: 1500 548: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1-stats.stdout.txt 548: -- REGEX is Mean abs: *([-0-9.]*) 548: -- LOWER_THRESH is 0.000 548: -- UPPER_THRESH is 0.000 548: -- PARSED VALUE=|Mean abs: 0.000 0.000 0.000| 548: -- PARSED_VALUE=|0.000| 548: Not an error 551/578 Test #548: xf-invert-vf-zero-1-check ............. Passed 0.10 sec test 555 Start 555: xf-invert-vrs-b-check 555: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm" "-DREGEX=^Parameters: *([-0-9.]*) *0 *0 *0 *0 *0 *$" "-DLOWER_THRESH=-0.52361" "-DUPPER_THRESH=-0.52359" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 555: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 555: Test timeout computed to be: 1500 553: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm 553: -- REGEX is ^Parameters: *(.*)$ 553: -- MATCH_STRING is 0 0 0 -20 0 0 553: -- PARSED VALUE=|Parameters: 0 0 0 -20 0 0| 553: -- PARSED_VALUE=|0 0 0 -20 0 0| 553: -- LENGTH=13 553: -- |0 0 0 -20 0 0|0 0 0 -20 0 0| 553: Not an error 551: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1-stats.stdout.txt 551: -- REGEX is Mean: *([-0-9.]*) 551: -- LOWER_THRESH is -10.0 551: -- UPPER_THRESH is -9.9 551: -- PARSED VALUE=|Mean: -9.999 0.000 0.000| 551: -- PARSED_VALUE=|-9.999| 551: Not an error 552/578 Test #551: xf-invert-vf-trans-1-check ............ Passed 0.10 sec test 558 Start 558: proton-dose-1-check 558: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.140" "-DUPPER_THRESH=0.145" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 558: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 558: Test timeout computed to be: 1500 553/578 Test #553: xf-invert-vrs-a-check ................. Passed 0.08 sec test 561 Start 561: proton-dose-4a-check 561: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.26" "-DUPPER_THRESH=0.27" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 561: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 561: Test timeout computed to be: 1500 555: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm 555: -- REGEX is ^Parameters: *([-0-9.]*) *0 *0 *0 *0 *0 *$ 555: -- LOWER_THRESH is -0.52361 555: -- UPPER_THRESH is -0.52359 555: -- PARSED VALUE=|Parameters: -0.5236 0 0 0 0 0| 555: -- PARSED_VALUE=|-0.5236| 555: Not an error 554/578 Test #555: xf-invert-vrs-b-check ................. Passed 0.10 sec test 567 Start 567: proton-dose-5a-check 567: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.26" "-DUPPER_THRESH=0.27" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 567: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 567: Test timeout computed to be: 1500 558: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1-stats.stdout.txt 558: -- REGEX is AVE *([-0-9.]*) 558: -- LOWER_THRESH is 0.140 558: -- UPPER_THRESH is 0.145 558: -- PARSED VALUE=|MIN 0.000000 AVE 0.143515 MAX 70.000000 NONZERO 775 NUMVOX 216000| 558: -- PARSED_VALUE=|0.143515| 558: Not an error 442: RETVAL: 0 442: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha 442: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha 442: Loading fixed pointset [1]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/sphere-7.fcsv 442: Loading moving image [1]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha 442: Launching registration worker thread 442: Inside registration worker thread 442: Doing registration stage 442: [1] xf_in->m_type = 0, xf_out->m_type = 0 442: RESAMPLE 1 1: (1 1 1), (1 1 1) 442: RESAMPLE 1 1: (1 1 1), (1 1 1) 442: volume_calc_grad complete. 442: RESAMPLE 1 1: (1 1 1), (1 1 1) 442: volume_calc_grad complete. 442: bspline_xform_initialize 442: Warning: vox_per_rgn was less than 4. 442: Warning: vox_per_rgn was less than 4. 442: Warning: vox_per_rgn was less than 4. 442: rdims = (10,10,10) 442: vox_per_rgn = (4,4,4) 442: cdims = (13 13 13) 442: Algorithm flavor = g 442: Threading = 0 442: >> Checking JH allocation 442: BSPLINE PARMS 442: max_its = 5 442: max_feval = 5 442: BSPLINE XFORM HEADER 442: vox_per_rgn = 4 4 4 442: roi_offset = 0 0 0 442: roi_dim = 38 38 38 442: img_dc = 1 0 0 0 1 0 0 0 1 442: BST METRICS 442: MET 110100 MSE 1.000000 442: MET 010100 PDM 30.000000 442: Setting nmax, mmax = 6591 83 442: >>> START 442: This problem is unconstrained. 442: [ 0, 0] SCORE 5752.552 NV 54872 GM 5.543 GN 45.1 [ 0.062 s ] 442: MSE 5540.166 PDM 7.0795197 CMIN 0.00 CAVG 0.00 CMAX 0.00 442: LSD 0.00 442: [ 0, 1] SCORE 5663.708 NV 54872 GM 0.170 GN 43.8 [ 0.035 s ] 442: MSE 5452.803 PDM 7.0301509 CMIN -0.20 CAVG -0.00 CMAX 0.16 442: LSD 1.00 442: [ 0, 2] SCORE 5319.446 NV 54872 GM -0.447 GN 42 [ 0.033 s ] 442: MSE 5114.376 PDM 6.8356566 CMIN -1.00 CAVG -0.00 CMAX 0.78 442: LSD 5.00 442: [ 0, 3] SCORE 4111.230 NV 54872 GM -2.786 GN 35.2 [ 0.034 s ] 442: MSE 3928.063 PDM 6.1055741 CMIN -4.21 CAVG -0.00 CMAX 3.26 442: LSD 21.00 442: [ 1, 4] SCORE 1404.270 NV 54872 GM 1.576 GN 10.3 [ 0.017 s ] 442: MSE 1228.705 PDM 5.8521819 CMIN -19.53 CAVG 0.01 CMAX 16.23 442: LSD 76.08 442: [ 2, 5] SCORE 1282.464 NV 54872 GM 13.580 GN 4.68 [ 0.017 s ] 442: MSE 1058.280 PDM 7.4727950 CMIN -25.04 CAVG 0.01 CMAX 19.49 442: LSD 32.00 442: [2] xf_out->m_type = 9, xf_in->m_type = 0 442: ** Registration worker thread finished. 442: Warping... 442: Running: plm_warp_native 442: Converting input image... 442: Converting xform... 442: bspline_xform_initialize 442: rdims = (10,10,10) 442: vox_per_rgn = (4,4,4) 442: cdims = (13 13 13) 442: Creating output vf... 442: Creating output volume... 442: Running native warper... 442: bspline_warp complete. 442: Back convert to original type... 442: > Convert vf to itk 442: > Conversion complete. 442: plm_warp_native is complete. 442: Saving image... 442: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-point-dmap-a-img.nrrd 442: Saving vf... 442: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-point-dmap-a-vf.nrrd 442: Load: 0.250333 442: Run: 0.250762 442: Save: 0.197144 442: Total: 0.698239 442: Finished! 442: 442: STDERR: 555/578 Test #558: proton-dose-1-check ................... Passed 0.09 sec test 570 Start 570: proton-dose-5d-check 570: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.38" "-DUPPER_THRESH=0.39" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 570: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 570: Test timeout computed to be: 1500 442: Not an error 556/578 Test #442: plm-reg-point-dmap-a .................. Passed 1.57 sec test 573 Start 573: proton-dose-6a-check 573: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.26" "-DUPPER_THRESH=0.27" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 573: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 573: Test timeout computed to be: 1500 561: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a-stats.stdout.txt 561: -- REGEX is AVE *([-0-9.]*) 561: -- LOWER_THRESH is 0.26 561: -- UPPER_THRESH is 0.27 561: -- PARSED VALUE=|MIN 0.000000 AVE 0.266114 MAX 100.000000 NONZERO 932 NUMVOX 216000| 561: -- PARSED_VALUE=|0.266114| 561: Not an error 557/578 Test #561: proton-dose-4a-check .................. Passed 0.11 sec test 575 Start 575: proton-dose-8d-stats 575: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-8d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 575: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 575: Test timeout computed to be: 1500 567: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a-stats.stdout.txt 567: -- REGEX is AVE *([-0-9.]*) 567: -- LOWER_THRESH is 0.26 567: -- UPPER_THRESH is 0.27 567: -- PARSED VALUE=|MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000| 567: -- PARSED_VALUE=|0.266122| 567: Not an error 423: RETVAL: 0 423: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-19.mha 423: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-4.mha 423: Loading fixed stiffness: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/roi-1.mha 423: Launching registration worker thread 423: Inside registration worker thread 423: Doing registration stage 423: [1] xf_in->m_type = 0, xf_out->m_type = 0 423: RESAMPLE 1 1: (2 2 2), (2 2 2) 423: RESAMPLE 1 1: (2 2 2), (2 2 2) 423: volume_calc_grad complete. 423: bspline_xform_initialize 423: Warning: vox_per_rgn was less than 4. 423: Warning: vox_per_rgn was less than 4. 423: Warning: vox_per_rgn was less than 4. 423: rdims = (5,5,5) 423: vox_per_rgn = (4,4,4) 423: cdims = (8 8 8) 423: RESAMPLE 1 1: (2 2 2), (2 2 2) 423: Algorithm flavor = g 423: Threading = 0 423: Regularization: flavor = a lambda = 0.100000 423: >> Checking JH allocation 423: BSPLINE PARMS 423: max_its = 5 423: max_feval = 5 423: BSPLINE XFORM HEADER 423: vox_per_rgn = 4 4 4 423: roi_offset = 0 0 0 423: roi_dim = 19 19 19 423: img_dc = 1 0 0 0 1 0 0 0 1 423: BST METRICS 423: MET 110100 MSE 1.000000 423: Setting nmax, mmax = 1536 41 423: >>> START 423: This problem is unconstrained. 423: [ 0, 0] SCORE 74227.273 NV 6859 GM 0.000 GN 188 [ 0.179 s ] 423: MSE 74227.273 RM 0.000 [ 0.059 | 0.120 ] 423: CMIN 0.00 CAVG 0.00 CMAX 0.00 423: LSD 0.00 423: [ 0, 1] SCORE 73948.398 NV 6859 GM 0.045 GN 187 [ 0.168 s ] 423: MSE 73948.391 RM 0.010 [ 0.014 | 0.154 ] 423: CMIN -0.14 CAVG -0.00 CMAX 0.15 423: LSD 1.00 423: [ 0, 2] SCORE 72846.922 NV 6859 GM 0.264 GN 183 [ 0.154 s ] 423: MSE 72846.680 RM 0.242 [ 0.029 | 0.125 ] 423: CMIN -0.69 CAVG -0.00 CMAX 0.76 423: LSD 5.00 423: [ 0, 3] SCORE 68660.922 NV 6859 GM 1.168 GN 166 [ 0.157 s ] 423: MSE 68656.656 RM 4.268 [ 0.025 | 0.132 ] 423: CMIN -2.91 CAVG -0.00 CMAX 3.18 423: LSD 21.00 423: [ 1, 4] SCORE 42095.320 NV 6859 GM -11.876 GN 58.8 [ 0.167 s ] 423: MSE 41780.070 RM 315.248 [ 0.018 | 0.148 ] 423: CMIN -25.44 CAVG -0.01 CMAX 25.37 423: LSD 160.09 423: [ 2, 5] SCORE 33075.488 NV 6859 GM 41.190 GN 77.9 [ 0.139 s ] 423: MSE 32300.393 RM 775.097 [ 0.014 | 0.126 ] 423: CMIN -39.12 CAVG 0.00 CMAX 38.06 423: LSD 114.34 423: [2] xf_out->m_type = 9, xf_in->m_type = 0 423: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 423: bspline_xform_initialize 423: rdims = (5,5,5) 423: vox_per_rgn = (8,8,8) 423: cdims = (8 8 8) 423: ** Registration worker thread finished. 423: Writing transformation ... 423: Warping... 423: Running: plm_warp_native 423: Converting input image... 423: Converting xform... 423: bspline_xform_initialize 423: rdims = (5,5,5) 423: vox_per_rgn = (8,8,8) 423: cdims = (8 8 8) 423: Creating output vf... 423: Creating output volume... 423: Running native warper... 423: bspline_warp complete. 423: Back convert to original type... 423: > Convert vf to itk 423: > Conversion complete. 423: plm_warp_native is complete. 423: Saving image... 423: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-stiffness-a-img.mha 423: Saving vf... 423: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-stiffness-a-vf.mha 423: Load: 0.206939 423: Run: 1.00294 423: Save: 0.055866 423: Total: 1.26574 423: Finished! 423: 423: STDERR: 558/578 Test #567: proton-dose-5a-check .................. Passed 0.06 sec 423: Not an error 559/578 Test #423: plm-reg-stiffness-a ................... Passed 1.75 sec 570: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d-stats.stdout.txt 570: -- REGEX is AVE *([-0-9.]*) 570: -- LOWER_THRESH is 0.38 570: -- UPPER_THRESH is 0.39 570: -- PARSED VALUE=|MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000| 570: -- PARSED_VALUE=|0.386816| 570: Not an error 573: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a-stats.stdout.txt 573: -- REGEX is AVE *([-0-9.]*) 573: -- LOWER_THRESH is 0.26 573: -- UPPER_THRESH is 0.27 573: -- PARSED VALUE=|MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000| 573: -- PARSED_VALUE=|0.266122| 573: Not an error 560/578 Test #570: proton-dose-5d-check .................. Passed 0.07 sec 575: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 575: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha 575: EXPECTED_ERRNO is 561/578 Test #573: proton-dose-6a-check .................. Passed 0.06 sec 499: RETVAL: 0 499: STDOUT: bspline_xform_initialize 499: rdims = (5,5,5) 499: vox_per_rgn = (8,8,8) 499: cdims = (8 8 8) 499: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-b.txt 499: 499: STDERR: 499: Not an error 562/578 Test #499: plm-warp-pointset-b ................... Passed 0.85 sec 500: RETVAL: 0 500: STDOUT: Trying to save: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-landmark-c.fcsv 500: 500: STDERR: 500: Not an error 563/578 Test #500: plm-warp-pointset-c ................... Passed 0.86 sec 529: RETVAL: 0 529: STDOUT: bspline_xform_initialize 529: rdims = (1,1,1) 529: vox_per_rgn = (4,4,4) 529: cdims = (4 4 4) 529: about to xform_convert 529: Converting to (itk) vector field 529: did xform_convert 529: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-c-vf.mha 529: 529: STDERR: 529: Not an error 564/578 Test #529: plm-xf-convert-c ...................... Passed 0.76 sec 538: RETVAL: 0 538: STDOUT: Loading fixed... 538: Loading moving... 538: Saving sro 538: ITK_AFF_OFF 538: 20.000000 0.000000 0.000000 538: SRO 538: 1.000000\0.000000\0.000000\-20.000000\0.000000\1.000000\0.000000\-0.000000\0.000000\0.000000\1.000000\-0.000000\0.0\0.0\0.0\1.0 538: Trying to save SRO: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-f/sro.dcm 538: Done saving sro 538: 538: STDERR: 538: Not an error 422: RETVAL: 0 422: STDOUT: Loading fixed image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha 422: Loading moving image [0]: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha 422: Launching registration worker thread 422: Inside registration worker thread 422: Doing registration stage 422: [1] xf_in->m_type = 0, xf_out->m_type = 0 422: Fixed image for this stage: 422: Dim = 15 25 15 422: Origin = -14 -24 -14 422: Spacing = 2 2 2 422: Direction Cosines = 422: 1 0 0 422: 0 1 0 422: 0 0 1 422: Moving image for this stage: 422: Dim = 15 25 15 422: Origin = -14 -24 -14 422: Spacing = 2 2 2 422: Direction Cosines = 422: 1 0 0 422: 0 1 0 422: 0 0 1 422: Initial Parameters = [0, 0, 0] 422: Starting ITK registration 422: StartEvent: [0, 0, 0] 422: MSE [ 0, 0, 1.00] 20000.000 [-0.9999999727511648, 0.00023344735891123153, 0] 422: :: [0, 0, 0] 422: * 422: MSE [ 1, 1, 1.00] 16666.407 [-1.9999999583532024, 0.00006375373999518562, 4.073670920162629e-17] -3333.59 422: :: [-0.9999999727511648, 0.00023344735891123153, 0] 422: * 422: MSE [ 2, 2, 1.00] 21428.450 [-2.999999953945063, 0.00015764878267371388, 1.9681769757797306e-16] 4762.04 422: MSE [ 3, 3, 0.50] 17856.955 [-2.499999978937018, -4.396560046960132e-7, 2.026088710093286e-16] -3571.49 422: MSE [ 4, 4, 0.50] 18749.999 [-1.999999979024236, -0.000009778710908822031, 2.026088710093286e-16] 893.04 422: MSE [ 5, 5, 0.25] 21428.553 [-2.249999944663833, 0.00012129455271900958, 2.026088710093286e-16] 2678.55 422: MSE [ 6, 6, 0.12] 19865.879 [-2.1250000509246822, -0.00004169379354033668, 3.072255580543447e-16] -1562.67 422: MSE [ 7, 7, 0.06] 20591.445 [-2.187499942399231, 0.00007477796101122572, 2.968535562691025e-16] 725.57 422: MSE [ 8, 8, 0.03] 20214.720 [-2.1562503690872257, -0.00008852487918382205, 1.875149349236142e-16] -376.73 422: MSE [ 9, 9, 0.02] 20399.540 [-2.1718751050913467, 0.0000023035388789350946, 2.1043273395374416e-16] 184.82 422: EndEvent: [-2.1718751050913467, 0.0000023035388789350946, 2.1043273395374416e-16] 422: RegularStepGradientDescentOptimizer: Maximum number of iterations (10) exceeded. 422: ITK registration complete 422: [2] xf_out->m_type = 1, xf_in->m_type = 0 422: Doing registration stage 422: [1] xf_in->m_type = 1, xf_out->m_type = 0 422: RESAMPLE 1 1: (2 2 2), (2 2 2) 422: RESAMPLE 1 1: (2 2 2), (2 2 2) 422: volume_calc_grad complete. 422: bspline_xform_initialize 422: rdims = (3,5,3) 422: vox_per_rgn = (5,5,5) 422: cdims = (6 8 6) 422: Algorithm flavor = g 422: Threading = 0 422: Regularization: flavor = c lambda = 0.100000 422: Regularizer initialized 422: >> Checking JH allocation 422: BSPLINE PARMS 422: max_its = 5 422: max_feval = 5 422: BSPLINE XFORM HEADER 422: vox_per_rgn = 5 5 5 422: roi_offset = 0 0 0 422: roi_dim = 15 25 15 422: img_dc = 1 0 0 0 1 0 0 0 1 422: BST METRICS 422: MET 110100 MSE 1.000000 422: Setting nmax, mmax = 864 31 422: >>> START 422: This problem is unconstrained. 422: [ 0, 0] SCORE 17856.865 NV 5250 GM 596.305 GN 997 [ 0.066 s ] 422: MSE 17856.865 RM 0.000 [ 0.038 | 0.028 ] 422: CMIN -1.00 CAVG -0.33 CMAX 0.00 422: LSD 0.00 422: [ 0, 1] SCORE 15761.621 NV 5415 GM 4002.270 GN 1.58e+03 [ 0.076 s ] 422: MSE 15761.603 RM 0.019 [ 0.023 | 0.053 ] 422: CMIN -1.35 CAVG -0.33 CMAX 0.11 422: LSD 1.00 422: [ 0, 2] SCORE 11419.833 NV 5415 GM 3904.956 GN 1.2e+03 [ 0.068 s ] 422: MSE 11419.360 RM 0.473 [ 0.044 | 0.024 ] 422: CMIN -2.76 CAVG -0.34 CMAX 0.57 422: LSD 5.00 422: [ 0, 3] SCORE 11865.492 NV 5349 GM 4432.436 GN 1.31e+03 [ 0.054 s ] 422: MSE 11857.157 RM 8.335 [ 0.016 | 0.038 ] 422: CMIN -8.39 CAVG -0.35 CMAX 4.37 422: LSD 21.00 422: [ 1, 4] SCORE 2624.840 NV 5330 GM 1520.288 GN 405 [ 0.070 s ] 422: MSE 2620.351 RM 4.489 [ 0.038 | 0.032 ] 422: CMIN -7.51 CAVG -0.37 CMAX 1.81 422: LSD 7.90 422: [ 2, 5] SCORE 2070.753 NV 5316 GM -1231.525 GN 432 [ 0.064 s ] 422: MSE 2064.967 RM 5.786 [ 0.032 | 0.032 ] 422: CMIN -8.62 CAVG -0.39 CMAX 1.40 422: LSD 4.35 422: [2] xf_out->m_type = 9, xf_in->m_type = 1 422: Doing registration stage 422: [1] xf_in->m_type = 9, xf_out->m_type = 0 422: RESAMPLE 1 1: (2 2 2), (2 2 2) 422: RESAMPLE 1 1: (2 2 2), (2 2 2) 422: volume_calc_grad complete. 422: bspline_xform_initialize 422: rdims = (3,5,3) 422: vox_per_rgn = (5,5,5) 422: cdims = (6 8 6) 422: Algorithm flavor = g 422: Threading = 0 422: Regularization: flavor = c lambda = 0.100000 422: Regularizer initialized 422: >> Checking JH allocation 422: BSPLINE PARMS 422: max_its = 5 422: max_feval = 5 422: BSPLINE XFORM HEADER 422: vox_per_rgn = 5 5 5 422: roi_offset = 0 0 0 422: roi_dim = 15 25 15 422: img_dc = 1 0 0 0 1 0 0 0 1 422: BST METRICS 422: MET 110100 MSE 1.000000 422: Setting nmax, mmax = 864 31 422: >>> START 422: This problem is unconstrained. 422: [ 0, 0] SCORE 2070.753 NV 5316 GM -1231.525 GN 432 [ 0.070 s ] 422: MSE 2064.967 RM 5.786 [ 0.030 | 0.040 ] 422: CMIN -8.62 CAVG -0.39 CMAX 1.40 422: LSD 0.00 422: [ 0, 1] SCORE 1741.366 NV 5318 GM -709.336 GN 291 [ 0.045 s ] 422: MSE 1736.001 RM 5.365 [ 0.016 | 0.029 ] 422: CMIN -8.13 CAVG -0.39 CMAX 1.38 422: LSD 1.00 422: [ 1, 2] SCORE 1448.726 NV 5351 GM 553.138 GN 184 [ 0.043 s ] 422: MSE 1444.063 RM 4.664 [ 0.019 | 0.024 ] 422: CMIN -7.05 CAVG -0.38 CMAX 1.33 422: LSD 2.47 422: [ 2, 3] SCORE 1411.069 NV 5344 GM 258.307 GN 92.3 [ 0.044 s ] 422: MSE 1406.122 RM 4.946 [ 0.012 | 0.032 ] 422: CMIN -7.20 CAVG -0.39 CMAX 1.33 422: LSD 0.62 422: [ 3, 4] SCORE 1391.029 NV 5340 GM -132.885 GN 63.2 [ 0.048 s ] 422: MSE 1385.782 RM 5.247 [ 0.016 | 0.032 ] 422: CMIN -7.41 CAVG -0.39 CMAX 1.30 422: LSD 0.81 422: [ 4, 5] SCORE 1380.556 NV 5338 GM 21.541 GN 39.1 [ 0.040 s ] 422: MSE 1375.316 RM 5.240 [ 0.016 | 0.024 ] 422: CMIN -7.42 CAVG -0.39 CMAX 1.30 422: LSD 0.36 422: [2] xf_out->m_type = 9, xf_in->m_type = 9 422: Doing registration stage 422: [1] xf_in->m_type = 9, xf_out->m_type = 0 422: RESAMPLE 1 1: (2 2 2), (2 2 2) 422: RESAMPLE 1 1: (2 2 2), (2 2 2) 422: volume_calc_grad complete. 422: bspline_xform_initialize 422: rdims = (3,5,3) 422: vox_per_rgn = (5,5,5) 422: cdims = (6 8 6) 422: Algorithm flavor = g 422: Threading = 0 422: Regularization: flavor = c lambda = 0.100000 422: Regularizer initialized 422: >> Checking JH allocation 422: BSPLINE PARMS 422: max_its = 5 422: max_feval = 5 422: BSPLINE XFORM HEADER 422: vox_per_rgn = 5 5 5 422: roi_offset = 0 0 0 422: roi_dim = 15 25 15 422: img_dc = 1 0 0 0 1 0 0 0 1 422: BST METRICS 422: MET 110100 MSE 1.000000 422: Setting nmax, mmax = 864 31 422: >>> START 422: This problem is unconstrained. 422: [ 0, 0] SCORE 1380.556 NV 5338 GM 21.541 GN 39.1 [ 0.038 s ] 422: MSE 1375.316 RM 5.240 [ 0.014 | 0.024 ] 422: CMIN -7.42 CAVG -0.39 CMAX 1.30 422: LSD 0.00 422: [ 0, 1] SCORE 1360.810 NV 5336 GM 259.462 GN 115 [ 0.036 s ] 422: MSE 1355.755 RM 5.056 [ 0.012 | 0.024 ] 422: CMIN -7.23 CAVG -0.39 CMAX 1.32 422: LSD 1.00 422: [ 0, 2] SCORE 1363.081 NV 5336 GM 215.275 GN 64.4 [ 0.026 s ] 422: MSE 1357.933 RM 5.148 [ 0.012 | 0.014 ] 422: CMIN -7.33 CAVG -0.39 CMAX 1.31 422: LSD 0.47 422: [ 1, 3] SCORE 1355.968 NV 5336 GM 93.286 GN 47.5 [ 0.034 s ] 422: MSE 1350.760 RM 5.209 [ 0.022 | 0.012 ] 422: CMIN -7.36 CAVG -0.39 CMAX 1.31 422: LSD 0.24 422: [ 2, 4] SCORE 1327.456 NV 5313 GM -133.711 GN 39.2 [ 0.036 s ] 422: MSE 1321.881 RM 5.575 [ 0.012 | 0.024 ] 422: CMIN -7.53 CAVG -0.39 CMAX 1.33 422: LSD 1.49 422: [ 3, 5] SCORE 1315.612 NV 5295 GM -129.321 GN 46.1 [ 0.025 s ] 422: MSE 1309.647 RM 5.965 [ 0.012 | 0.014 ] 422: CMIN -7.65 CAVG -0.40 CMAX 1.39 422: LSD 1.60 422: [2] xf_out->m_type = 9, xf_in->m_type = 9 422: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) 422: bspline_xform_initialize 422: rdims = (3,5,3) 422: vox_per_rgn = (10,10,10) 422: cdims = (6 8 6) 422: ** Registration worker thread finished. 422: Writing transformation ... 422: Warping... 422: Running: plm_warp_native 422: Converting input image... 422: Converting xform... 422: bspline_xform_initialize 422: rdims = (3,5,3) 422: vox_per_rgn = (10,10,10) 422: cdims = (6 8 6) 422: Creating output vf... 422: Creating output volume... 422: Running native warper... 422: bspline_warp complete. 422: Back convert to original type... 422: > Convert vf to itk 422: > Conversion complete. 422: plm_warp_native is complete. 422: Saving image... 422: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-e-img.mha 422: Saving vf... 422: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-e-vf.mha 422: Load: 0.23659 422: Run: 1.10786 422: Save: 0.0597301 422: Total: 1.40418 422: Finished! 422: 422: STDERR: 422: Not an error 565/578 Test #422: plm-reg-roi-e ......................... Passed 2.10 sec 566/578 Test #538: plm-xf-convert-f ...................... Passed 0.76 sec 575: RETVAL: 0 575: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 216000 575: 575: STDERR: 575: Not an error 567/578 Test #575: proton-dose-8d-stats .................. Passed 0.39 sec 537: RETVAL: 0 537: STDOUT: Loading fixed... 537: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542514.1683112258.67599RTDOSE 537: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542514.1683112258.67600RTSTRUCT 537: Found DCM_ReferencedFrameOfReferenceSequence! 537: Found DCM_RTReferencedStudySequence! 537: Trying to load rt dose. 537: Load: DoseGridScaling = 0.000000 537: RTDOSE: dim = 38 38 38 537: ipp = -243.421005 -243.421005 -243.421005 537: spc = 13.157900 13.157900 13.157900 537: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 537: Bits_alloc: 32 537: Bits_stored: 32 537: High_bit: 31 537: Pixel_rep: 0 537: rc = 1, length = 109744, npix = 54872 537: Trying to load rt structure set. 537: Adding structure (1), Foreground 537: Structure 1 has color 255\0\0 537: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542514.1683112258.67599RTDOSE 537: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542514.1683112258.67600RTSTRUCT 537: Found DCM_ReferencedFrameOfReferenceSequence! 537: Found DCM_RTReferencedStudySequence! 537: Trying to load rt dose. 537: Load: DoseGridScaling = 0.000000 537: RTDOSE: dim = 38 38 38 537: ipp = -243.421005 -243.421005 -243.421005 537: spc = 13.157900 13.157900 13.157900 537: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 537: Bits_alloc: 32 537: Bits_stored: 32 537: High_bit: 31 537: Pixel_rep: 0 537: rc = 1, length = 109744, npix = 54872 537: Trying to load rt structure set. 537: Adding structure (1), Foreground 537: Structure 1 has color 255\0\0 537: Loading moving... 537: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8627RTDOSE 537: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8628RTSTRUCT 537: Found DCM_ReferencedFrameOfReferenceSequence! 537: Found DCM_RTReferencedStudySequence! 537: Trying to load rt dose. 537: Load: DoseGridScaling = 0.000000 537: RTDOSE: dim = 38 38 38 537: ipp = -243.421005 -243.421005 -243.421005 537: spc = 13.157900 13.157900 13.157900 537: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 537: Bits_alloc: 32 537: Bits_stored: 32 537: High_bit: 31 537: Pixel_rep: 0 537: rc = 1, length = 109744, npix = 54872 537: Trying to load rt structure set. 537: Adding structure (1), Foreground 537: Structure 1 has color 255\0\0 537: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8627RTDOSE 537: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8628RTSTRUCT 537: Found DCM_ReferencedFrameOfReferenceSequence! 537: Found DCM_RTReferencedStudySequence! 537: Trying to load rt dose. 537: Load: DoseGridScaling = 0.000000 537: RTDOSE: dim = 38 38 38 537: ipp = -243.421005 -243.421005 -243.421005 537: spc = 13.157900 13.157900 13.157900 537: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 537: Bits_alloc: 32 537: Bits_stored: 32 537: High_bit: 31 537: Pixel_rep: 0 537: rc = 1, length = 109744, npix = 54872 537: Trying to load rt structure set. 537: Adding structure (1), Foreground 537: Structure 1 has color 255\0\0 537: Saving sro 537: ITK_AFF_OFF 537: 20.000000 0.000000 0.000000 537: SRO 537: 1.000000\0.000000\0.000000\-20.000000\0.000000\1.000000\0.000000\-0.000000\0.000000\0.000000\1.000000\-0.000000\0.0\0.0\0.0\1.0 537: Trying to save SRO: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-e/sro.dcm 537: Done saving sro 537: 537: STDERR: 537: Not an error 568/578 Test #537: plm-xf-convert-e ...................... Passed 0.82 sec 539: RETVAL: 0 539: STDOUT: Loading fixed... 539: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8627RTDOSE 539: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8628RTSTRUCT 539: Found DCM_ReferencedFrameOfReferenceSequence! 539: Found DCM_RTReferencedStudySequence! 539: Trying to load rt dose. 539: Load: DoseGridScaling = 0.000000 539: RTDOSE: dim = 38 38 38 539: ipp = -243.421005 -243.421005 -243.421005 539: spc = 13.157900 13.157900 13.157900 539: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 539: Bits_alloc: 32 539: Bits_stored: 32 539: High_bit: 31 539: Pixel_rep: 0 539: rc = 1, length = 109744, npix = 54872 539: Trying to load rt structure set. 539: Adding structure (1), Foreground 539: Structure 1 has color 255\0\0 539: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8627RTDOSE 539: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542498.1683112258.8628RTSTRUCT 539: Found DCM_ReferencedFrameOfReferenceSequence! 539: Found DCM_RTReferencedStudySequence! 539: Trying to load rt dose. 539: Load: DoseGridScaling = 0.000000 539: RTDOSE: dim = 38 38 38 539: ipp = -243.421005 -243.421005 -243.421005 539: spc = 13.157900 13.157900 13.157900 539: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 539: Bits_alloc: 32 539: Bits_stored: 32 539: High_bit: 31 539: Pixel_rep: 0 539: rc = 1, length = 109744, npix = 54872 539: Trying to load rt structure set. 539: Adding structure (1), Foreground 539: Structure 1 has color 255\0\0 539: Loading moving... 539: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542514.1683112258.67599RTDOSE 539: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542514.1683112258.67600RTSTRUCT 539: Found DCM_ReferencedFrameOfReferenceSequence! 539: Found DCM_RTReferencedStudySequence! 539: Trying to load rt dose. 539: Load: DoseGridScaling = 0.000000 539: RTDOSE: dim = 38 38 38 539: ipp = -243.421005 -243.421005 -243.421005 539: spc = 13.157900 13.157900 13.157900 539: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 539: Bits_alloc: 32 539: Bits_stored: 32 539: High_bit: 31 539: Pixel_rep: 0 539: rc = 1, length = 109744, npix = 54872 539: Trying to load rt structure set. 539: Adding structure (1), Foreground 539: Structure 1 has color 255\0\0 539: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542514.1683112258.67599RTDOSE 539: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3542514.1683112258.67600RTSTRUCT 539: Found DCM_ReferencedFrameOfReferenceSequence! 539: Found DCM_RTReferencedStudySequence! 539: Trying to load rt dose. 539: Load: DoseGridScaling = 0.000000 539: RTDOSE: dim = 38 38 38 539: ipp = -243.421005 -243.421005 -243.421005 539: spc = 13.157900 13.157900 13.157900 539: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 539: Bits_alloc: 32 539: Bits_stored: 32 539: High_bit: 31 539: Pixel_rep: 0 539: rc = 1, length = 109744, npix = 54872 539: Trying to load rt structure set. 539: Adding structure (1), Foreground 539: Structure 1 has color 255\0\0 539: Saving sro 539: Trying to save SRO: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-g/dro.dcm 539: Done saving sro 539: 539: STDERR: 539: Not an error 569/578 Test #539: plm-xf-convert-g ...................... Passed 0.80 sec 576: RETVAL: 0 576: STDOUT: Skin file defined. Modifying input ct... 576: FPD = 320.500029, BPD = 821.195355 576: 100 100 501 576: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.nrrd 576: Computing wed ct volume... 576: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-wed-ct.mha 576: done. 576: 100 100 501 576: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-proj-ct.nrrd 576: 576: STDERR: 576: Not an error 570/578 Test #576: wed-a ................................. Passed 4.90 sec test 577 Start 577: wed-b 577: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=wed-b" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=wed;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-b.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 577: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 577: Test timeout computed to be: 1500 test 578 Start 578: wed-c 578: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=wed-c" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=wed;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-c.txt" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 578: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 578: Test timeout computed to be: 1500 577: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 577: PARMS is wed;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-b.txt 577: EXPECTED_ERRNO is 578: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 578: PARMS is wed;--command-file;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-c.txt 578: EXPECTED_ERRNO is 578: RETVAL: 0 578: STDOUT: Loading rpl 578: -> /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.mha 578: -> /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.mha-> /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.mha.projv 578: Error opening /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.mha.projv for readCouldn't open /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.mha.nrrd for read 578: Done. 578: Skin file defined. Modifying input ct... 578: FPD = 320.500029, BPD = 821.195355 578: 100 100 501 578: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-c-dew-ct.mha 578: 578: STDERR: 578: Not an error 571/578 Test #578: wed-c ................................. Passed 1.17 sec 577: RETVAL: 0 577: STDOUT: Loading rpl 577: -> /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.rpl 577: -> /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed-> /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.projv 577: Error loading projv file 577: image_dim=100 100 577: Done. 577: Skin file defined. Modifying input ct... 577: FPD = 320.500029, BPD = 821.195355 577: 100 100 501 577: Computing wed ct volume... 577: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-b-wed-ct.mha 577: done. 577: 100 100 501 577: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-b-proj-ct.nrrd 577: 577: STDERR: 577: Not an error 572/578 Test #577: wed-b ................................. Passed 2.90 sec 471: RETVAL: 0 471: STDOUT: Contrast threshold = 0.030000 471: Curvature threshold = 172.302505 471: Computing Octave Level 0... (100 100 100 ...Computing Gradient......Done 471: Setting Up Gaussian Filter 0-0...scale: 0 sigma: 2 471: Setting Up Gaussian Filter 0-1...scale: 1 sigma: 1.53284 471: Done 471: Setting Up DoG Filter 0-1...Done 471: Setting Up Gaussian Filter 0-2...scale: 2 sigma: 1.93126 471: Done 471: Setting Up DoG Filter 0-2...Done 471: Setting Up Gaussian Filter 0-3...scale: 3 sigma: 2.43323 471: Done 471: Setting Up DoG Filter 0-3...Done 471: Setting Up Gaussian Filter 0-4...scale: 4 sigma: 3.06568 471: Done 471: Setting Up DoG Filter 0-4...Done 471: Setting Up Gaussian Filter 0-5...scale: 5 sigma: 3.86252 471: Done 471: Setting Up DoG Filter 0-5...Done 471: Searching for Extrema in DoG Image 0-1 ( 100 100 100 ) Scale 0.5 471: Acc. Num Max: 0 471: Acc. Num Min: 0 471: Acc. Num Reject: 0 471: Searching for Extrema in DoG Image 0-2 ( 100 100 100 ) Scale 0.5 471: Acc. Num Max: 0 471: Acc. Num Min: 24 471: Acc. Num Reject: 0 471: Searching for Extrema in DoG Image 0-3 ( 100 100 100 ) Scale 0.5 471: Acc. Num Max: 0 471: Acc. Num Min: 24 471: Acc. Num Reject: 0 471: Computing Octave Level 1... (50 50 50 ...Computing Gradient......Done 471: Setting Up Gaussian Filter 1-0...scale: 0 sigma: 2 471: Setting Up Gaussian Filter 1-1...scale: 1 sigma: 1.53284 471: Done 471: Setting Up DoG Filter 1-1...Done 471: Setting Up Gaussian Filter 1-2...scale: 2 sigma: 1.93126 471: Done 471: Setting Up DoG Filter 1-2...Done 471: Setting Up Gaussian Filter 1-3...scale: 3 sigma: 2.43323 471: Done 471: Setting Up DoG Filter 1-3...Done 471: Setting Up Gaussian Filter 1-4...scale: 4 sigma: 3.06568 471: Done 471: Setting Up DoG Filter 1-4...Done 471: Setting Up Gaussian Filter 1-5...scale: 5 sigma: 3.86252 471: Done 471: Setting Up DoG Filter 1-5...Done 471: Searching for Extrema in DoG Image 1-1 ( 50 50 50 ) Scale 1 471: Acc. Num Max: 0 471: Acc. Num Min: 24 471: Acc. Num Reject: 0 471: Searching for Extrema in DoG Image 1-2 ( 50 50 50 ) Scale 1 471: Acc. Num Max: 0 471: Acc. Num Min: 24 471: Acc. Num Reject: 0 471: Searching for Extrema in DoG Image 1-3 ( 50 50 50 ) Scale 1 471: Acc. Num Max: 0 471: Acc. Num Min: 24 471: Acc. Num Reject: 0 471: Computing Octave Level 2... (25 25 25 ...Computing Gradient......Done 471: Setting Up Gaussian Filter 2-0...scale: 0 sigma: 2 471: Setting Up Gaussian Filter 2-1...scale: 1 sigma: 1.53284 471: Done 471: Setting Up DoG Filter 2-1...Done 471: Setting Up Gaussian Filter 2-2...scale: 2 sigma: 1.93126 471: Done 471: Setting Up DoG Filter 2-2...Done 471: Setting Up Gaussian Filter 2-3...scale: 3 sigma: 2.43323 471: Done 471: Setting Up DoG Filter 2-3...Done 471: Setting Up Gaussian Filter 2-4...scale: 4 sigma: 3.06568 471: Done 471: Setting Up DoG Filter 2-4...Done 471: Setting Up Gaussian Filter 2-5...scale: 5 sigma: 3.86252 471: Done 471: Setting Up DoG Filter 2-5...Done 471: Searching for Extrema in DoG Image 2-1 ( 25 25 25 ) Scale 2 471: Acc. Num Max: 0 471: Acc. Num Min: 24 471: Acc. Num Reject: 0 471: Searching for Extrema in DoG Image 2-2 ( 25 25 25 ) Scale 2 471: Acc. Num Max: 0 471: Acc. Num Min: 24 471: Acc. Num Reject: 0 471: Searching for Extrema in DoG Image 2-3 ( 25 25 25 ) Scale 2 471: Acc. Num Max: 0 471: Acc. Num Min: 24 471: Acc. Num Reject: 0 471: Total Num Max: 0 471: Total Num Min: 24 471: Total Num Reject: 0 471: Contrast threshold = 0.030000 471: Curvature threshold = 172.302505 471: Computing Octave Level 0... (100 100 100 ...Computing Gradient......Done 471: Setting Up Gaussian Filter 0-0...scale: 0 sigma: 2 471: Setting Up Gaussian Filter 0-1...scale: 1 sigma: 1.53284 471: Done 471: Setting Up DoG Filter 0-1...Done 471: Setting Up Gaussian Filter 0-2...scale: 2 sigma: 1.93126 471: Done 471: Setting Up DoG Filter 0-2...Done 471: Setting Up Gaussian Filter 0-3...scale: 3 sigma: 2.43323 471: Done 471: Setting Up DoG Filter 0-3...Done 471: Setting Up Gaussian Filter 0-4...scale: 4 sigma: 3.06568 471: Done 471: Setting Up DoG Filter 0-4...Done 471: Setting Up Gaussian Filter 0-5...scale: 5 sigma: 3.86252 471: Done 471: Setting Up DoG Filter 0-5...Done 471: Searching for Extrema in DoG Image 0-1 ( 100 100 100 ) Scale 0.5 471: Acc. Num Max: 0 471: Acc. Num Min: 0 471: Acc. Num Reject: 0 471: Searching for Extrema in DoG Image 0-2 ( 100 100 100 ) Scale 0.5 471: Acc. Num Max: 0 471: Acc. Num Min: 24 471: Acc. Num Reject: 0 471: Searching for Extrema in DoG Image 0-3 ( 100 100 100 ) Scale 0.5 471: Acc. Num Max: 0 471: Acc. Num Min: 24 471: Acc. Num Reject: 0 471: Computing Octave Level 1... (50 50 50 ...Computing Gradient......Done 471: Setting Up Gaussian Filter 1-0...scale: 0 sigma: 2 471: Setting Up Gaussian Filter 1-1...scale: 1 sigma: 1.53284 471: Done 471: Setting Up DoG Filter 1-1...Done 471: Setting Up Gaussian Filter 1-2...scale: 2 sigma: 1.93126 471: Done 471: Setting Up DoG Filter 1-2...Done 471: Setting Up Gaussian Filter 1-3...scale: 3 sigma: 2.43323 471: Done 471: Setting Up DoG Filter 1-3...Done 471: Setting Up Gaussian Filter 1-4...scale: 4 sigma: 3.06568 471: Done 471: Setting Up DoG Filter 1-4...Done 471: Setting Up Gaussian Filter 1-5...scale: 5 sigma: 3.86252 471: Done 471: Setting Up DoG Filter 1-5...Done 471: Searching for Extrema in DoG Image 1-1 ( 50 50 50 ) Scale 1 471: Acc. Num Max: 0 471: Acc. Num Min: 24 471: Acc. Num Reject: 0 471: Searching for Extrema in DoG Image 1-2 ( 50 50 50 ) Scale 1 471: Acc. Num Max: 0 471: Acc. Num Min: 24 471: Acc. Num Reject: 0 471: Searching for Extrema in DoG Image 1-3 ( 50 50 50 ) Scale 1 471: Acc. Num Max: 0 471: Acc. Num Min: 24 471: Acc. Num Reject: 0 471: Computing Octave Level 2... (25 25 25 ...Computing Gradient......Done 471: Setting Up Gaussian Filter 2-0...scale: 0 sigma: 2 471: Setting Up Gaussian Filter 2-1...scale: 1 sigma: 1.53284 471: Done 471: Setting Up DoG Filter 2-1...Done 471: Setting Up Gaussian Filter 2-2...scale: 2 sigma: 1.93126 471: Done 471: Setting Up DoG Filter 2-2...Done 471: Setting Up Gaussian Filter 2-3...scale: 3 sigma: 2.43323 471: Done 471: Setting Up DoG Filter 2-3...Done 471: Setting Up Gaussian Filter 2-4...scale: 4 sigma: 3.06568 471: Done 471: Setting Up DoG Filter 2-4...Done 471: Setting Up Gaussian Filter 2-5...scale: 5 sigma: 3.86252 471: Done 471: Setting Up DoG Filter 2-5...Done 471: Searching for Extrema in DoG Image 2-1 ( 25 25 25 ) Scale 2 471: Acc. Num Max: 0 471: Acc. Num Min: 24 471: Acc. Num Reject: 0 471: Searching for Extrema in DoG Image 2-2 ( 25 25 25 ) Scale 2 471: Acc. Num Max: 0 471: Acc. Num Min: 24 471: Acc. Num Reject: 0 471: Searching for Extrema in DoG Image 2-3 ( 25 25 25 ) Scale 2 471: Acc. Num Max: 0 471: Acc. Num Min: 24 471: Acc. Num Reject: 0 471: Total Num Max: 0 471: Total Num Min: 24 471: Total Num Reject: 0 471: Keypoints1 Found: 24 471: Keypoints2 Found: 24 471: ***Keypoint Matches*** 471: [7.5, -7.5, -17.5] => [7.5, -7.5, -22.5] 471: [-7.5, 7.5, -17.5] => [-7.5, 7.5, -22.5] 471: [7.5, 7.5, -17.5] => [7.5, 7.5, -22.5] 471: [-7.5, -17.5, -7.5] => [-7.5, -17.5, -12.5] 471: [7.5, -17.5, -7.5] => [7.5, -17.5, -12.5] 471: [-17.5, -7.5, -7.5] => [-17.5, -7.5, -12.5] 471: [17.5, -7.5, -7.5] => [17.5, -7.5, -12.5] 471: [-17.5, 7.5, -7.5] => [-17.5, 7.5, -12.5] 471: [17.5, 7.5, -7.5] => [17.5, 7.5, -12.5] 471: [-7.5, 17.5, -7.5] => [-7.5, 17.5, -12.5] 471: [7.5, 17.5, -7.5] => [7.5, 17.5, -12.5] 471: [-7.5, -17.5, 7.5] => [-7.5, -17.5, 2.5] 471: [7.5, -17.5, 7.5] => [7.5, -17.5, 2.5] 471: [-17.5, -7.5, 7.5] => [-17.5, -7.5, 2.5] 471: [17.5, -7.5, 7.5] => [17.5, -7.5, 2.5] 471: [-17.5, 7.5, 7.5] => [-17.5, 7.5, 2.5] 471: [17.5, 7.5, 7.5] => [17.5, 7.5, 2.5] 471: [-7.5, 17.5, 7.5] => [-7.5, 17.5, 2.5] 471: [7.5, 17.5, 7.5] => [7.5, 17.5, 2.5] 471: [-7.5, -7.5, 17.5] => [-7.5, -7.5, 12.5] 471: [7.5, -7.5, 17.5] => [7.5, -7.5, 12.5] 471: [-7.5, 7.5, 17.5] => [-7.5, 7.5, 12.5] 471: [7.5, 7.5, 17.5] => [7.5, 7.5, 12.5] 471: 471: ***Features Matches: 23 471: 471: STDERR: 471: Not an error 573/578 Test #471: plm-sift-a ............................ Passed 15.39 sec test 472 Start 472: plm-sift-a-check-1 472: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-1.fcsv" "-DREGEX=^p1-1,(.*)" "-DMATCH_STRING=-7.500,7.500,-17.500" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckString.cmake" 472: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 472: Test timeout computed to be: 1500 test 473 Start 473: plm-sift-a-check-2 473: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-2.fcsv" "-DREGEX=^p1-1,(.*)" "-DMATCH_STRING=-7.500,7.500,-22.500" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckString.cmake" 473: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 473: Test timeout computed to be: 1500 472: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-1.fcsv 472: -- REGEX is ^p1-1,(.*) 472: -- MATCH_STRING is -7.500,7.500,-17.500 472: -- PARSED VALUE=|p1-1,-7.500,7.500,-17.500| 472: -- PARSED_VALUE=|-7.500,7.500,-17.500| 472: -- LENGTH=20 472: -- |-7.500,7.500,-17.500|-7.500,7.500,-17.500| 472: Not an error 574/578 Test #472: plm-sift-a-check-1 .................... Passed 0.06 sec 473: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-2.fcsv 473: -- REGEX is ^p1-1,(.*) 473: -- MATCH_STRING is -7.500,7.500,-22.500 473: -- PARSED VALUE=|p1-1,-7.500,7.500,-22.500| 473: -- PARSED_VALUE=|-7.500,7.500,-22.500| 473: -- LENGTH=20 473: -- |-7.500,7.500,-22.500|-7.500,7.500,-22.500| 473: Not an error 575/578 Test #473: plm-sift-a-check-2 .................... Passed 0.06 sec 562: RETVAL: 0 562: STDOUT: 562: [PLAN] 562: patient : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha 562: target : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha 562: dose_out : /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha 562: debug : 0 562: dose norm : 100 562: 562: [SETTINGS] 562: flavor: d ** 562: homo_approx: n ** 562: ray_step: 1 ** 562: aperture_out: ** 562: proj_dose_out: ** 562: proj_img_out: ** 562: range_comp_out: ** 562: sigma_out: ** 562: wed_out: ** 562: beam_weight: 1 ** 562: 562: [GEOMETRY & APERTURE] 562: source: 0 -2000 0 ** 562: isocenter: 0 0 0 ** 562: vup: 0 0 1 ** 562: offset: 1500 ** 562: ap_center in pixels: 20 20 ** 562: i_res: 41 41 ** 562: spacing: 3.75 3.75 ** 562: source_size: 0 ** 562: ap_file_in: ** 562: rc_file_in: ** 562: smearing: 5 ** 562: 562: [PEAK] 562: E0: P0 562: spread: P0 562: weight: P0 562: 562: Start dose calculation Beam 1 562: Plan_calc::compute_beam_dose(beam) entry -- 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: Priority 5. Target detected. 562: Computing beam modifiers for passive target 562: Compute target wepl_min_max... 562: Apply lateral smearing to the target... 562: Smearing = 5.000000, Smearing_ap = 3.750000 562: Strel size = (1,1), (3,3) 562: 0 1 0 562: 1 1 1 562: 0 1 0 562: Apply proximal and distal ... 562: Compute max wed... 562: Compute the aperture... 562: Compute range compensator... 562: Max wed in the target is 117.554 mm. 562: Min wed in the target is 88.5526 mm. 562: ires = 41 41 562: proj_vol dim = 41 41 302 562: prescription min/max: 88.5526 mm, 117.554 mm. 562: 562: 22 Mono-energetic BP used: 562: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 562: Adding peak to sobp (130.000000, 1.000000, 0.895612) [0.010000, 140.000000] 562: Adding peak to sobp (129.000000, 1.000000, 0.143334) [0.010000, 140.000000] 562: Adding peak to sobp (128.000000, 1.000000, 0.216499) [0.010000, 140.000000] 562: Adding peak to sobp (127.000000, 1.000000, 0.160917) [0.010000, 140.000000] 562: Adding peak to sobp (126.000000, 1.000000, 0.140926) [0.010000, 140.000000] 562: Adding peak to sobp (125.000000, 1.000000, 0.124814) [0.010000, 140.000000] 562: Adding peak to sobp (124.000000, 1.000000, 0.113261) [0.010000, 140.000000] 562: Adding peak to sobp (123.000000, 1.000000, 0.102876) [0.010000, 140.000000] 562: Adding peak to sobp (122.000000, 1.000000, 0.096644) [0.010000, 140.000000] 562: Adding peak to sobp (121.000000, 1.000000, 0.089393) [0.010000, 140.000000] 562: Adding peak to sobp (120.000000, 1.000000, 0.083935) [0.010000, 140.000000] 562: Adding peak to sobp (119.000000, 1.000000, 0.078956) [0.010000, 140.000000] 562: Adding peak to sobp (118.000000, 1.000000, 0.074957) [0.010000, 140.000000] 562: Adding peak to sobp (117.000000, 1.000000, 0.071067) [0.010000, 140.000000] 562: Adding peak to sobp (116.000000, 1.000000, 0.067803) [0.010000, 140.000000] 562: Adding peak to sobp (115.000000, 1.000000, 0.064859) [0.010000, 140.000000] 562: Adding peak to sobp (114.000000, 1.000000, 0.062045) [0.010000, 140.000000] 562: Adding peak to sobp (113.000000, 1.000000, 0.059730) [0.010000, 140.000000] 562: Adding peak to sobp (112.000000, 1.000000, 0.057228) [0.010000, 140.000000] 562: Adding peak to sobp (111.000000, 1.000000, 0.056709) [0.010000, 140.000000] 562: Adding peak to sobp (110.000000, 1.000000, 0.045556) [0.010000, 140.000000] 562: Adding peak to sobp (109.000000, 1.000000, 0.079095) [0.010000, 140.000000] 562: **** (1) 562: sigma_img: 41 41 302 562: dim: 41 41 302 562: Sigma patient computed - sigma_pt_max = 2.87445 mm. 562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 562: Sigma range compensator computed - sigma_rc_max = 0.000474397 mm. 562: Global sigma computed - Global sigma_max = 2.87445 mm. 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: sigma_img: 41 41 302 562: dim: 41 41 302 562: Sigma patient computed - sigma_pt_max = 2.86823 mm. 562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 562: Sigma range compensator computed - sigma_rc_max = 0.000479245 mm. 562: Global sigma computed - Global sigma_max = 2.86823 mm. 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: sigma_img: 41 41 302 562: dim: 41 41 302 562: Sigma patient computed - sigma_pt_max = 2.81247 mm. 562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 562: Sigma range compensator computed - sigma_rc_max = 0.000485151 mm. 562: Global sigma computed - Global sigma_max = 2.81247 mm. 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: sigma_img: 41 41 302 562: dim: 41 41 302 562: Sigma patient computed - sigma_pt_max = 2.80639 mm. 562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 562: Sigma range compensator computed - sigma_rc_max = 0.000490292 mm. 562: Global sigma computed - Global sigma_max = 2.80639 mm. 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: sigma_img: 41 41 302 562: dim: 41 41 302 562: Sigma patient computed - sigma_pt_max = 2.74919 mm. 562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 562: Sigma range compensator computed - sigma_rc_max = 0.000495583 mm. 562: Global sigma computed - Global sigma_max = 2.74919 mm. 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: sigma_img: 41 41 302 562: dim: 41 41 302 562: Sigma patient computed - sigma_pt_max = 2.69289 mm. 562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 562: Sigma range compensator computed - sigma_rc_max = 0.000501994 mm. 562: Global sigma computed - Global sigma_max = 2.69289 mm. 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: sigma_img: 41 41 302 562: dim: 41 41 302 562: Sigma patient computed - sigma_pt_max = 2.68596 mm. 562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 562: Sigma range compensator computed - sigma_rc_max = 0.000506613 mm. 562: Global sigma computed - Global sigma_max = 2.68596 mm. 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: sigma_img: 41 41 302 562: dim: 41 41 302 562: Sigma patient computed - sigma_pt_max = 2.62886 mm. 562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 562: Sigma range compensator computed - sigma_rc_max = 0.000512341 mm. 562: Global sigma computed - Global sigma_max = 2.62886 mm. 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: sigma_img: 41 41 302 562: dim: 41 41 302 562: Sigma patient computed - sigma_pt_max = 2.57127 mm. 562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 562: Sigma range compensator computed - sigma_rc_max = 0.000517222 mm. 562: Global sigma computed - Global sigma_max = 2.57127 mm. 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: sigma_img: 41 41 302 562: dim: 41 41 302 562: Sigma patient computed - sigma_pt_max = 2.56307 mm. 562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 562: Sigma range compensator computed - sigma_rc_max = 0.000523251 mm. 562: Global sigma computed - Global sigma_max = 2.56307 mm. 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: sigma_img: 41 41 302 562: dim: 41 41 302 562: Sigma patient computed - sigma_pt_max = 2.50537 mm. 562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 562: Sigma range compensator computed - sigma_rc_max = 0.000528418 mm. 562: Global sigma computed - Global sigma_max = 2.50537 mm. 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: sigma_img: 41 41 302 562: dim: 41 41 302 562: Sigma patient computed - sigma_pt_max = 2.49685 mm. 562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 562: Sigma range compensator computed - sigma_rc_max = 0.000534772 mm. 562: Global sigma computed - Global sigma_max = 2.49685 mm. 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: sigma_img: 41 41 302 562: dim: 41 41 302 562: Sigma patient computed - sigma_pt_max = 2.4384 mm. 562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 562: Sigma range compensator computed - sigma_rc_max = 0.000540249 mm. 562: Global sigma computed - Global sigma_max = 2.4384 mm. 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: sigma_img: 41 41 302 562: dim: 41 41 302 562: Sigma patient computed - sigma_pt_max = 2.42949 mm. 562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 562: Sigma range compensator computed - sigma_rc_max = 0.000546957 mm. 562: Global sigma computed - Global sigma_max = 2.42949 mm. 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: sigma_img: 41 41 302 562: dim: 41 41 302 562: Sigma patient computed - sigma_pt_max = 2.37035 mm. 562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 562: Sigma range compensator computed - sigma_rc_max = 0.000552773 mm. 562: Global sigma computed - Global sigma_max = 2.37035 mm. 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: sigma_img: 41 41 302 562: dim: 41 41 302 562: Sigma patient computed - sigma_pt_max = 2.36098 mm. 562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 562: Sigma range compensator computed - sigma_rc_max = 0.000559867 mm. 562: Global sigma computed - Global sigma_max = 2.36098 mm. 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: sigma_img: 41 41 302 562: dim: 41 41 302 562: Sigma patient computed - sigma_pt_max = 2.30119 mm. 562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 562: Sigma range compensator computed - sigma_rc_max = 0.000566053 mm. 562: Global sigma computed - Global sigma_max = 2.30119 mm. 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: sigma_img: 41 41 302 562: dim: 41 41 302 562: Sigma patient computed - sigma_pt_max = 2.29132 mm. 562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 562: Sigma range compensator computed - sigma_rc_max = 0.000573569 mm. 562: Global sigma computed - Global sigma_max = 2.29132 mm. 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: sigma_img: 41 41 302 562: dim: 41 41 302 562: Sigma patient computed - sigma_pt_max = 2.23096 mm. 562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 562: Sigma range compensator computed - sigma_rc_max = 0.000580162 mm. 562: Global sigma computed - Global sigma_max = 2.23096 mm. 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: sigma_img: 41 41 302 562: dim: 41 41 302 562: Sigma patient computed - sigma_pt_max = 2.22053 mm. 562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 562: Sigma range compensator computed - sigma_rc_max = 0.000588138 mm. 562: Global sigma computed - Global sigma_max = 2.22053 mm. 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: sigma_img: 41 41 302 562: dim: 41 41 302 562: Sigma patient computed - sigma_pt_max = 2.15969 mm. 562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 562: Sigma range compensator computed - sigma_rc_max = 0.000595178 mm. 562: Global sigma computed - Global sigma_max = 2.15969 mm. 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: sigma_img: 41 41 302 562: dim: 41 41 302 562: Sigma patient computed - sigma_pt_max = 2.14863 mm. 562: Sigma source computed - sigma_src_max = 0 mm. (Source size <= 0) 562: Sigma range compensator computed - sigma_rc_max = 0.000603663 mm. 562: Global sigma computed - Global sigma_max = 2.14863 mm. 562: Setting RVRTS = 1 562: FPD = 347.500001, BPD = 649.116731 562: 41 41 302 562: Raw dose at the maximum (0, 5, 0) : 10.689 A.U. 562: Dose normalized at the maximum to 1 x 100%. 562: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm 562: Trying to write image to /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha 562: Sigma: 0.321816 seconds 562: Calc: 35.195237 seconds 562: IO: 0.168084 seconds 562: Reformat: 0.025187 seconds 562: Misc: 0.039748 seconds 562: done. 562: 562: Total execution time : 35.756905 seconds. 562: 562: STDERR: 562: Not an error 576/578 Test #562: proton-dose-4d ........................ Passed 36.26 sec test 563 Start 563: proton-dose-4d-stats 563: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4d-stats" "-DPLM_TEST_COMMAND=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha" "-P" "/build/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 563: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 563: Test timeout computed to be: 1500 563: PLM_TEST_COMMAND is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 563: PARMS is stats;/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha 563: EXPECTED_ERRNO is 563: RETVAL: 0 563: STDOUT: MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000 563: 563: STDERR: 563: Not an error 577/578 Test #563: proton-dose-4d-stats .................. Passed 0.30 sec test 564 Start 564: proton-dose-4d-check 564: Test command: /usr/bin/cmake "-DINFILE=/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.38" "-DUPPER_THRESH=0.39" "-P" "/build/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 564: Working Directory: /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 564: Test timeout computed to be: 1500 564: -- INFILE is /build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d-stats.stdout.txt 564: -- REGEX is AVE *([-0-9.]*) 564: -- LOWER_THRESH is 0.38 564: -- UPPER_THRESH is 0.39 564: -- PARSED VALUE=|MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000| 564: -- PARSED_VALUE=|0.386816| 564: Not an error 578/578 Test #564: proton-dose-4d-check .................. Passed 0.05 sec 100% tests passed, 0 tests failed out of 578 Total Test time (real) = 51.24 sec make[2]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/plastimatch-1.9.4+dfsg.1' dh_auto_install cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/plastimatch-1.9.4\+dfsg.1/debian/plastimatch AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/plastimatch-1.9.4+dfsg.1 -B/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RELEASE" -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/share/doc/plastimatch/README.TXT -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/share/doc/plastimatch/COPYRIGHT.TXT -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/liblbfgs.a -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libdevillard.a -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libinih.a -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libspecfun.a -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libnkidecompress.a -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends.cmake -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends-release.cmake -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfig.cmake -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfigVersion.cmake -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libplmbase.so.1.9 -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libplmbase.so -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmbase_config.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/aperture.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/astroid_dose.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/beam_geometry.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_header.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_interpolate.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_warp.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform_legacy.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/clamp.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/cxt_extract.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/cxt_io.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_probe.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_util.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_cosines.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_matrices.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/float_pair_list.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/gaussian.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io_p.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_stats.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate_macros.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itkAndConstantToImageFilter.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itkClampCastImageFilter.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_bbox.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_directions.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_accumulate.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_cast.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_clone.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_create.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_header_compare.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_load.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_origin.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_region.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_save.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_shift_scale.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_stats.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_type.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_metadata.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_point.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_pointset.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_resample.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_volume_header.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_warp.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/make_string.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/mc_dose.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/metadata.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/mha_io.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/nki_io.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/parameter_parser.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_file_format.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_p.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_header.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_set.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_type.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_itk.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_uid_prefix.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_warp.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset_warp.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_image.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_image_dir.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_matrix.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_volume.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/pwlut.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rasterize_slice.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rasterizer.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/raw_pointset.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_data.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace_callback.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace_probe.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume_lut.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_p.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_metadata.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss_contour.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss_roi.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_beam.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_control_pt.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/segmentation.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/slice_extract.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/slice_list.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_img_extract.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_list_io.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/threading.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/thumbnail.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_convolve.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_jacobian.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_stats.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_boundary_behavior.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_conv.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_fill.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_gaussian.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_grad.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_header.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_limit.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_macros.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_resample.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_stats.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_convert.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_legacy.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_point.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct_transform.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_demographic.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dir.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dose.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_patient.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_plan.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_structures.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_studyset.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xpm.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xpm_p.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_config.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_file.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_metadata.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_module.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rdd.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtdose.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtss.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtplan.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study_p.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series_map.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_sro.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_uid.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_util.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libplmsys.so.1.9 -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libplmsys.so -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_config.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmsys_config.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/compiler_warnings.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/delayload.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dir_list.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/double_align8.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dlib_threads.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/file_util.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/logfile.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/option_range.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/path_util.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_endian.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_exception.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_fwrite.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_int.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_macros.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_math.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_return_code.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_sleep.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer_p.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_va_copy.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/print_and_exit.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/smart_pointer.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/string_util.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/delayload_legacy.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libplmutil.so.1.9 -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libplmutil.so -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmutil_config.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dice_statistics.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dvh.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/gamma_dose_comparison.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/geometry_chooser.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/hausdorff_distance.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_boundary.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_center.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_adjust.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_histogram_matching.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_intersect.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_local_intensity_correction.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_union.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_warp.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_adjust.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_boundary_type.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xf_invert.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/zcrop.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/gabor.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ramp_filter.h -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/bin/plastimatch -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libplmdose.so.1.9 -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libplmdose.so -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libplmreconstruct.so.1.9 -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libplmreconstruct.so -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libplmregister.so.1.9 -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libplmregister.so -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libplmsegment.so.1.9 -- Installing: /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libplmsegment.so make[2]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' rm -rfv /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/*.a removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libdevillard.a' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libinih.a' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/liblbfgs.a' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libnkidecompress.a' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libspecfun.a' rm -rfv /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/cmake removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfigVersion.cmake' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfig.cmake' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends-release.cmake' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends.cmake' removed directory '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch' removed directory '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/cmake' rm -rfv /build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ramp_filter.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/gabor.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/zcrop.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xf_invert.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_boundary_type.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_adjust.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_warp.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_union.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_local_intensity_correction.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_intersect.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_histogram_matching.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_adjust.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_center.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_boundary.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/hausdorff_distance.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/geometry_chooser.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/gamma_dose_comparison.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dvh.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dice_statistics.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmutil_config.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/delayload_legacy.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/string_util.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/smart_pointer.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/print_and_exit.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_va_copy.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer_p.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_sleep.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_return_code.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_math.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_macros.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_int.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_fwrite.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_exception.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_endian.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/path_util.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/option_range.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/logfile.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/file_util.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dlib_threads.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/double_align8.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dir_list.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/delayload.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/compiler_warnings.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmsys_config.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_config.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_util.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_uid.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_sro.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series_map.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study_p.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtplan.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtss.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtdose.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rdd.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_module.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_metadata.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_file.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_config.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xpm_p.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xpm.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_studyset.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_structures.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_plan.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_patient.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dose.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dir.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_demographic.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct_transform.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_point.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_legacy.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_convert.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_stats.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_resample.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_macros.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_limit.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_header.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_grad.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_gaussian.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_fill.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_conv.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_boundary_behavior.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_stats.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_jacobian.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_convolve.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/thumbnail.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/threading.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_list_io.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_img_extract.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/slice_list.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/slice_extract.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/segmentation.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_control_pt.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_beam.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss_roi.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss_contour.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_metadata.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_p.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume_lut.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace_probe.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace_callback.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_data.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/raw_pointset.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rasterizer.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rasterize_slice.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/pwlut.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_volume.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_matrix.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_image_dir.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_image.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset_warp.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_warp.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_uid_prefix.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_itk.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_type.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_set.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_header.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_p.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_file_format.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/parameter_parser.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/nki_io.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/mha_io.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/metadata.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/mc_dose.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/make_string.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_warp.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_volume_header.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_resample.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_pointset.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_point.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_metadata.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_type.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_stats.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_shift_scale.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_save.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_region.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_origin.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_load.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_header_compare.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_create.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_clone.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_cast.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_accumulate.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_directions.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_bbox.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itkClampCastImageFilter.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itkAndConstantToImageFilter.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate_macros.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_stats.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io_p.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/gaussian.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/float_pair_list.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_matrices.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_cosines.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_util.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_probe.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/cxt_io.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/cxt_extract.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/clamp.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform_legacy.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_warp.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_interpolate.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_header.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/beam_geometry.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/astroid_dose.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/aperture.h' removed '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmbase_config.h' removed directory '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch' removed directory '/build/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include' make[1]: Leaving directory '/build/plastimatch-1.9.4+dfsg.1' dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: deprecated use of LD_LIBRARY_PATH with private library directory which interferes with cross-building, please use -l option instead dpkg-shlibdeps: warning: deprecated use of LD_LIBRARY_PATH with private library directory which interferes with cross-building, please use -l option instead dpkg-shlibdeps: warning: deprecated use of LD_LIBRARY_PATH with private library directory which interferes with cross-building, please use -l option instead dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'plastimatch' in '../plastimatch_1.9.4+dfsg.1-1_amd64.deb'. dpkg-deb: building package 'plastimatch-dbgsym' in '../plastimatch-dbgsym_1.9.4+dfsg.1-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../plastimatch_1.9.4+dfsg.1-1_amd64.buildinfo dpkg-genchanges --build=binary -O../plastimatch_1.9.4+dfsg.1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3373719 and its subdirectories I: Current time: Tue May 2 23:14:15 -12 2023 I: pbuilder-time-stamp: 1683112455