I: pbuilder: network access will be disabled during build I: Current time: Sat Jun 3 22:41:24 -12 2023 I: pbuilder-time-stamp: 1685875284 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pbcopper_2.0.0+dfsg-2.dsc] I: copying [./pbcopper_2.0.0+dfsg.orig.tar.xz] I: copying [./pbcopper_2.0.0+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Feb 24 05:34:18 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pbcopper_2.0.0+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting pbcopper in pbcopper-2.0.0+dfsg dpkg-source: info: unpacking pbcopper_2.0.0+dfsg.orig.tar.xz dpkg-source: info: unpacking pbcopper_2.0.0+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying simde.patch dpkg-source: info: applying static+shared_lib.patch dpkg-source: info: applying skip_test_Parallel_FireAndForget.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3588383/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='886999ef306e45558bb1ef72a13505ae' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3588383' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.omkkr9xA/pbuilderrc_jxPs --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.omkkr9xA/b1 --logfile b1/build.log pbcopper_2.0.0+dfsg-2.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 5.10.0-23-amd64 #1 SMP Debian 5.10.179-1 (2023-05-12) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/3588383/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, meson, cmake, pkg-config, libboost-dev, googletest, libgtest-dev, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19591 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on meson; however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on googletest; however: Package googletest is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgtest-dev{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} media-types{a} meson{a} ninja-build{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 74 newly installed, 0 to remove and 0 not upgraded. Need to get 50.3 MB of archives. After unpacking 305 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libarchive13 amd64 3.6.2-1 [343 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-10 [386 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 librhash0 amd64 1.4.3-3 [134 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libuv1 amd64 1.44.2-1 [140 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 cmake-data all 3.25.1-1 [2026 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 cmake amd64 3.25.1-1 [8692 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 d-shlibs all 0.104 [18.6 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 googletest all 1.12.1-0.2 [506 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-21 [9508 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libgtest-dev amd64 1.12.1-0.2 [240 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 libsimde-dev all 0.7.4~rc2-2 [377 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 ninja-build amd64 1.11.1-1 [136 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 meson all 1.0.1-5 [548 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] Fetched 50.3 MB in 2s (23.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19591 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/pbcopper-2.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pbcopper_2.0.0+dfsg-2_source.changes dpkg-buildpackage: info: source package pbcopper dpkg-buildpackage: info: source version 2.0.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --builddirectory=build dh_auto_clean -O--builddirectory=build dh_autoreconf_clean -O--builddirectory=build dh_clean -O--builddirectory=build debian/rules binary dh binary --builddirectory=build dh_update_autotools_config -O--builddirectory=build dh_autoreconf -O--builddirectory=build dh_auto_configure -O--builddirectory=build cd build && LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/x86_64-linux-gnu The Meson build system Version: 1.0.1 Source dir: /build/pbcopper-2.0.0+dfsg Build dir: /build/pbcopper-2.0.0+dfsg/build Build type: native build ../meson.build:2: WARNING: Keyword argument "default_options" defined multiple times. WARNING: This will be an error in future Meson releases. Project name: pbcopper Project version: 2.0.0 C compiler for the host machine: cc (gcc 12.2.0 "cc (Debian 12.2.0-14) 12.2.0") C linker for the host machine: cc ld.bfd 2.40 C++ compiler for the host machine: c++ (gcc 12.2.0 "c++ (Debian 12.2.0-14) 12.2.0") C++ linker for the host machine: c++ ld.bfd 2.40 Host machine cpu family: x86_64 Host machine cpu: x86_64 Compiler for C++ supports arguments -Wduplicated-cond: YES Compiler for C++ supports arguments -Wduplicated-branches: YES Compiler for C++ supports arguments -Wlogical-op: YES Compiler for C++ supports arguments -Wrestrict: YES Compiler for C++ supports arguments -Wdouble-promotion: YES Compiler for C++ supports arguments -Wshadow: YES Compiler for C++ supports arguments -Wformat=1: YES Compiler for C supports arguments -Wc++-compat: YES Compiler for C supports arguments -Wno-unused-parameter: YES Compiler for C supports arguments -Wno-unused-variable: YES Compiler for C supports arguments -Wno-sign-compare: YES Compiler for C supports arguments -Wno-unused-but-set-variable: YES Compiler for C supports arguments -msse4.1: YES Run-time dependency threads found: YES Found pkg-config: /usr/bin/pkg-config (1.8.1) Run-time dependency Boost found: YES 1.74.0 (/usr/include) Configuring PbcopperVersion.cpp using configuration Configuring LibraryVersion.h using configuration Program tools/check-formatting found: YES (/build/pbcopper-2.0.0+dfsg/tools/check-formatting) Program tools/check-eof found: YES (/build/pbcopper-2.0.0+dfsg/tools/check-eof) Run-time dependency GTest found: YES 1.12.1 Configuring PbcopperTestData.h using configuration Build targets in project: 5 pbcopper 2.0.0 User defined options buildtype : plain libdir : lib/x86_64-linux-gnu localstatedir: /var prefix : /usr sysconfdir : /etc wrap_mode : nodownload Found ninja-1.11.1 at /usr/bin/ninja dh_auto_build -O--builddirectory=build cd build && LC_ALL=C.UTF-8 ninja -j15 -v [1/164] /usr/bin/meson --internal vcstagger ../src/utility/PbcopperGitHash.cpp.in src/utility/PbcopperGitHash.cpp 2.0.0 /build/pbcopper-2.0.0+dfsg/src/utility @COPPER_GIT_SHA1@ '(.*)' git describe --always '--dirty=*' [2/164] /usr/bin/meson --internal vcstagger ../src/LibraryGitHash.h.in src/LibraryGitHash.h 2.0.0 /build/pbcopper-2.0.0+dfsg/src @COPPER_GIT_SHA1@ '(.*)' git describe --always '--dirty=*' [3/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o -MF src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o.d -o 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-Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o -MF src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o.d -o src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o -c src/utility/PbcopperVersion.cpp [98/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/utility_Stopwatch.cpp.o -MF src/libpbcopper.so.2.0.0.p/utility_Stopwatch.cpp.o.d -o src/libpbcopper.so.2.0.0.p/utility_Stopwatch.cpp.o -c ../src/utility/Stopwatch.cpp [99/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/utility_TimeReporter.cpp.o -MF src/libpbcopper.so.2.0.0.p/utility_TimeReporter.cpp.o.d -o src/libpbcopper.so.2.0.0.p/utility_TimeReporter.cpp.o -c ../src/utility/TimeReporter.cpp [100/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/align_PairwiseAlignment.cpp.o -MF src/libpbcopper.so.2.0.0.p/align_PairwiseAlignment.cpp.o.d -o src/libpbcopper.so.2.0.0.p/align_PairwiseAlignment.cpp.o -c ../src/align/PairwiseAlignment.cpp [101/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/utility_StringUtils.cpp.o -MF src/libpbcopper.so.2.0.0.p/utility_StringUtils.cpp.o.d -o src/libpbcopper.so.2.0.0.p/utility_StringUtils.cpp.o -c ../src/utility/StringUtils.cpp [102/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/third-party_sparc_sparcSimple.cpp.o -MF src/libpbcopper.so.2.0.0.p/third-party_sparc_sparcSimple.cpp.o.d -o src/libpbcopper.so.2.0.0.p/third-party_sparc_sparcSimple.cpp.o -c ../src/third-party/sparc/sparcSimple.cpp [103/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/pbmer_KFGraph.cpp.o -MF src/libpbcopper.so.2.0.0.p/pbmer_KFGraph.cpp.o.d -o src/libpbcopper.so.2.0.0.p/pbmer_KFGraph.cpp.o -c ../src/pbmer/KFGraph.cpp [104/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/reports_Report.cpp.o -MF src/libpbcopper.so.2.0.0.p/reports_Report.cpp.o.d -o src/libpbcopper.so.2.0.0.p/reports_Report.cpp.o -c ../src/reports/Report.cpp [105/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/third-party_sparc_sparc.cpp.o -MF src/libpbcopper.so.2.0.0.p/third-party_sparc_sparc.cpp.o.d -o src/libpbcopper.so.2.0.0.p/third-party_sparc_sparc.cpp.o -c ../src/third-party/sparc/sparc.cpp In file included from /usr/include/string.h:535, from /usr/include/c++/12/cstring:42, from ../src/third-party/sparc/sparc.cpp:7: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘void Sparc::{anonymous}::RShiftNB(uint64_t*, int, int)’ at ../src/third-party/sparc/sparc.cpp:139:16, inlined from ‘void Sparc::{anonymous}::GetSubArray(uint64_t*, int, int, int, uint64_t*)’ at ../src/third-party/sparc/sparc.cpp:187:13: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’ forming offset [104, 111] is out of the bounds [0, 104] of object ‘temp_arr’ with type ‘boost::container::small_vector’ [-Warray-bounds] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ ../src/third-party/sparc/sparc.cpp: In function ‘void Sparc::{anonymous}::GetSubArray(uint64_t*, int, int, int, uint64_t*)’: ../src/third-party/sparc/sparc.cpp:160:50: note: ‘temp_arr’ declared here 160 | boost::container::small_vector temp_arr(10); | ^~~~~~~~ [106/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o -MF tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o -c ../tests/src/data/test_Accuracy.cpp [107/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/poa_RangeFinder.cpp.o -MF src/libpbcopper.so.2.0.0.p/poa_RangeFinder.cpp.o.d -o src/libpbcopper.so.2.0.0.p/poa_RangeFinder.cpp.o -c ../src/poa/RangeFinder.cpp [108/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o -MF tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o.d -o tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o -c ../tests/src/dagcon/test_Alignment.cpp [109/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/poa_PoaGraphTraversals.cpp.o -MF src/libpbcopper.so.2.0.0.p/poa_PoaGraphTraversals.cpp.o.d -o src/libpbcopper.so.2.0.0.p/poa_PoaGraphTraversals.cpp.o -c ../src/poa/PoaGraphTraversals.cpp [110/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Frames.cpp.o -MF tests/pbcopper_test.p/src_data_test_Frames.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Frames.cpp.o -c ../tests/src/data/test_Frames.cpp [111/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o -c ../tests/src/cli2/test_VersionPrinter.cpp [112/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/reports_ReportPrinter.cpp.o -MF src/libpbcopper.so.2.0.0.p/reports_ReportPrinter.cpp.o.d -o src/libpbcopper.so.2.0.0.p/reports_ReportPrinter.cpp.o -c ../src/reports/ReportPrinter.cpp [113/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o -MF tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o.d -o tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o -c ../tests/src/dagcon/test_AlignmentGraph.cpp [114/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o -MF tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o.d -o tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o -c ../tests/src/data/test_GenomicInterval.cpp [115/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o -MF tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o.d -o tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o -c ../tests/src/data/test_QualityValues.cpp [116/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_IntervalTree.cpp.o -MF tests/pbcopper_test.p/src_data_test_IntervalTree.cpp.o.d -o tests/pbcopper_test.p/src_data_test_IntervalTree.cpp.o -c ../tests/src/data/test_IntervalTree.cpp [117/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_MovieName.cpp.o -MF tests/pbcopper_test.p/src_data_test_MovieName.cpp.o.d -o tests/pbcopper_test.p/src_data_test_MovieName.cpp.o -c ../tests/src/data/test_MovieName.cpp [118/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Cigar.cpp.o -MF 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-ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Interval.cpp.o -MF tests/pbcopper_test.p/src_data_test_Interval.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Interval.cpp.o -c ../tests/src/data/test_Interval.cpp [121/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches 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c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_math_test_ConfusionMatrix.cpp.o -MF tests/pbcopper_test.p/src_math_test_ConfusionMatrix.cpp.o.d -o tests/pbcopper_test.p/src_math_test_ConfusionMatrix.cpp.o -c ../tests/src/math/test_ConfusionMatrix.cpp [124/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat 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tests/pbcopper_test.p/src_json_test_JSON.cpp.o -MF tests/pbcopper_test.p/src_json_test_JSON.cpp.o.d -o tests/pbcopper_test.p/src_json_test_JSON.cpp.o -c ../tests/src/json/test_JSON.cpp [126/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_RSMovieName.cpp.o -MF tests/pbcopper_test.p/src_data_test_RSMovieName.cpp.o.d -o tests/pbcopper_test.p/src_data_test_RSMovieName.cpp.o -c ../tests/src/data/test_RSMovieName.cpp [127/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_ReadName.cpp.o -MF tests/pbcopper_test.p/src_data_test_ReadName.cpp.o.d -o tests/pbcopper_test.p/src_data_test_ReadName.cpp.o -c ../tests/src/data/test_ReadName.cpp [128/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 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tests/pbcopper_test.p/src_logging_test_Logging.cpp.o.d -o tests/pbcopper_test.p/src_logging_test_Logging.cpp.o -c ../tests/src/logging/test_Logging.cpp [130/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Kmer.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Kmer.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Kmer.cpp.o -c ../tests/src/pbmer/test_Kmer.cpp [131/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o -c ../tests/src/parallel/test_FireAndForget.cpp [132/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 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tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o -c ../tests/src/pbmer/test_DbgNode.cpp [134/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o -MF tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o.d -o tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o -c ../tests/src/data/test_MappedRead.cpp [135/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o -c ../tests/src/pbmer/test_Parser.cpp [136/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o -c ../tests/src/pbmer/test_Dbg.cpp [137/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o -c ../tests/src/pbmer/test_DnaBit.cpp [138/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o -c ../tests/src/parallel/test_WorkQueue.cpp [139/164] rm -f src/libpbcopper.a && gcc-ar csrD src/libpbcopper.a src/libpbcopper.so.2.0.0.p/LibraryInfo.cpp.o src/libpbcopper.so.2.0.0.p/algorithm_Heteroduplex.cpp.o src/libpbcopper.so.2.0.0.p/align_AffineAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_AlignConfig.cpp.o src/libpbcopper.so.2.0.0.p/align_BandedChainAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_ChainSeeds.cpp.o src/libpbcopper.so.2.0.0.p/align_ChainSeedsConfig.cpp.o src/libpbcopper.so.2.0.0.p/align_EdlibAlign.cpp.o src/libpbcopper.so.2.0.0.p/align_FindSeeds.cpp.o src/libpbcopper.so.2.0.0.p/align_GlobalLocalAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_LinearAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_LocalAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_PairwiseAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_Seed.cpp.o src/libpbcopper.so.2.0.0.p/align_Seeds.cpp.o src/libpbcopper.so.2.0.0.p/align_SparseAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_cssw_ssw.c.o src/libpbcopper.so.2.0.0.p/align_cssw_ssw_cpp.cpp.o src/libpbcopper.so.2.0.0.p/cli2_CLI.cpp.o src/libpbcopper.so.2.0.0.p/cli2_CommandLineParser.cpp.o src/libpbcopper.so.2.0.0.p/cli2_HelpMetrics.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Interface.cpp.o src/libpbcopper.so.2.0.0.p/cli2_InterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.0.0.p/cli2_MultiToolInterface.cpp.o src/libpbcopper.so.2.0.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.0.0.p/cli2_OptionTranslator.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Option.cpp.o src/libpbcopper.so.2.0.0.p/cli2_OptionValue.cpp.o src/libpbcopper.so.2.0.0.p/cli2_PositionalArgumentTranslator.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Result.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Results.cpp.o src/libpbcopper.so.2.0.0.p/cli2_VersionPrinter.cpp.o src/libpbcopper.so.2.0.0.p/dagcon_Alignment.cpp.o src/libpbcopper.so.2.0.0.p/dagcon_AlignmentGraph.cpp.o src/libpbcopper.so.2.0.0.p/data_Accuracy.cpp.o src/libpbcopper.so.2.0.0.p/data_Cigar.cpp.o src/libpbcopper.so.2.0.0.p/data_CigarOperation.cpp.o src/libpbcopper.so.2.0.0.p/data_Clipping.cpp.o src/libpbcopper.so.2.0.0.p/data_FrameEncoders.cpp.o src/libpbcopper.so.2.0.0.p/data_Frames.cpp.o src/libpbcopper.so.2.0.0.p/data_GenomicInterval.cpp.o src/libpbcopper.so.2.0.0.p/data_Interval.cpp.o src/libpbcopper.so.2.0.0.p/data_IntervalTree.cpp.o src/libpbcopper.so.2.0.0.p/data_MappedRead.cpp.o src/libpbcopper.so.2.0.0.p/data_MovieName.cpp.o src/libpbcopper.so.2.0.0.p/data_QualityValue.cpp.o src/libpbcopper.so.2.0.0.p/data_QualityValues.cpp.o src/libpbcopper.so.2.0.0.p/data_Read.cpp.o src/libpbcopper.so.2.0.0.p/data_ReadId.cpp.o src/libpbcopper.so.2.0.0.p/data_RSMovieName.cpp.o src/libpbcopper.so.2.0.0.p/data_SNR.cpp.o src/libpbcopper.so.2.0.0.p/data_Strand.cpp.o src/libpbcopper.so.2.0.0.p/logging_Logging.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogConfig.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogLevel.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogMessage.cpp.o src/libpbcopper.so.2.0.0.p/math_FishersExact.cpp.o src/libpbcopper.so.2.0.0.p/parallel_FireAndForget.cpp.o src/libpbcopper.so.2.0.0.p/parallel_ThreadCount.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Dbg.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_DbgNode.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_DnaBit.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Kmer.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_KFGraph.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_KFNode.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Mers.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_SparseHaplotype.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Parser.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaAlignmentMatrix.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaConsensus.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraph.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraphImpl.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraphTraversals.cpp.o src/libpbcopper.so.2.0.0.p/poa_RangeFinder.cpp.o src/libpbcopper.so.2.0.0.p/poa_SparsePoa.cpp.o src/libpbcopper.so.2.0.0.p/reports_Report.cpp.o src/libpbcopper.so.2.0.0.p/reports_ReportPrinter.cpp.o src/libpbcopper.so.2.0.0.p/reports_TaskReport.cpp.o src/libpbcopper.so.2.0.0.p/third-party_base64_base64.cpp.o src/libpbcopper.so.2.0.0.p/third-party_edlib_edlib.cpp.o src/libpbcopper.so.2.0.0.p/third-party_htslib_kfunc.c.o src/libpbcopper.so.2.0.0.p/third-party_ksw2_kalloc.c.o src/libpbcopper.so.2.0.0.p/third-party_ksw2_ksw2_simde.c.o src/libpbcopper.so.2.0.0.p/third-party_sparc_sparc.cpp.o src/libpbcopper.so.2.0.0.p/third-party_sparc_sparcSimple.cpp.o src/libpbcopper.so.2.0.0.p/utility_Alarm.cpp.o src/libpbcopper.so.2.0.0.p/utility_Base64.cpp.o src/libpbcopper.so.2.0.0.p/utility_Deleters.cpp.o src/libpbcopper.so.2.0.0.p/utility_MemoryConsumption.cpp.o src/libpbcopper.so.2.0.0.p/utility_Stopwatch.cpp.o src/libpbcopper.so.2.0.0.p/utility_StringUtils.cpp.o src/libpbcopper.so.2.0.0.p/utility_TimeReporter.cpp.o src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o [140/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o -c ../tests/src/pbmer/test_Mers.cpp [141/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o -c ../tests/src/parallel/test_FireAndForgetIndexed.cpp ../tests/src/parallel/test_FireAndForgetIndexed.cpp: In member function ‘virtual void Parallel_FireAndForgetIndexed_strings_Test::TestBody()’: ../tests/src/parallel/test_FireAndForgetIndexed.cpp:15:25: warning: unused variable ‘numElements’ [-Wunused-variable] 15 | static const size_t numElements = 10000; | ^~~~~~~~~~~ ../tests/src/parallel/test_FireAndForgetIndexed.cpp:28:10: warning: variable ‘Submit’ set but not used [-Wunused-but-set-variable] 28 | auto Submit = [&vec](size_t index, size_t data) { vec[index] += data; }; | ^~~~~~ [142/164] c++ -o src/libpbcopper.so.2.0.0 src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o src/libpbcopper.so.2.0.0.p/LibraryInfo.cpp.o src/libpbcopper.so.2.0.0.p/algorithm_Heteroduplex.cpp.o src/libpbcopper.so.2.0.0.p/align_AffineAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_AlignConfig.cpp.o src/libpbcopper.so.2.0.0.p/align_BandedChainAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_ChainSeeds.cpp.o src/libpbcopper.so.2.0.0.p/align_ChainSeedsConfig.cpp.o src/libpbcopper.so.2.0.0.p/align_EdlibAlign.cpp.o src/libpbcopper.so.2.0.0.p/align_FindSeeds.cpp.o src/libpbcopper.so.2.0.0.p/align_GlobalLocalAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_LinearAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_LocalAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_PairwiseAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_Seed.cpp.o src/libpbcopper.so.2.0.0.p/align_Seeds.cpp.o src/libpbcopper.so.2.0.0.p/align_SparseAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_cssw_ssw.c.o src/libpbcopper.so.2.0.0.p/align_cssw_ssw_cpp.cpp.o src/libpbcopper.so.2.0.0.p/cli2_CLI.cpp.o src/libpbcopper.so.2.0.0.p/cli2_CommandLineParser.cpp.o src/libpbcopper.so.2.0.0.p/cli2_HelpMetrics.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Interface.cpp.o src/libpbcopper.so.2.0.0.p/cli2_InterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.0.0.p/cli2_MultiToolInterface.cpp.o src/libpbcopper.so.2.0.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.0.0.p/cli2_OptionTranslator.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Option.cpp.o src/libpbcopper.so.2.0.0.p/cli2_OptionValue.cpp.o src/libpbcopper.so.2.0.0.p/cli2_PositionalArgumentTranslator.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Result.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Results.cpp.o src/libpbcopper.so.2.0.0.p/cli2_VersionPrinter.cpp.o src/libpbcopper.so.2.0.0.p/dagcon_Alignment.cpp.o src/libpbcopper.so.2.0.0.p/dagcon_AlignmentGraph.cpp.o src/libpbcopper.so.2.0.0.p/data_Accuracy.cpp.o src/libpbcopper.so.2.0.0.p/data_Cigar.cpp.o src/libpbcopper.so.2.0.0.p/data_CigarOperation.cpp.o src/libpbcopper.so.2.0.0.p/data_Clipping.cpp.o src/libpbcopper.so.2.0.0.p/data_FrameEncoders.cpp.o src/libpbcopper.so.2.0.0.p/data_Frames.cpp.o src/libpbcopper.so.2.0.0.p/data_GenomicInterval.cpp.o src/libpbcopper.so.2.0.0.p/data_Interval.cpp.o src/libpbcopper.so.2.0.0.p/data_IntervalTree.cpp.o src/libpbcopper.so.2.0.0.p/data_MappedRead.cpp.o src/libpbcopper.so.2.0.0.p/data_MovieName.cpp.o src/libpbcopper.so.2.0.0.p/data_QualityValue.cpp.o src/libpbcopper.so.2.0.0.p/data_QualityValues.cpp.o src/libpbcopper.so.2.0.0.p/data_Read.cpp.o src/libpbcopper.so.2.0.0.p/data_ReadId.cpp.o src/libpbcopper.so.2.0.0.p/data_RSMovieName.cpp.o src/libpbcopper.so.2.0.0.p/data_SNR.cpp.o src/libpbcopper.so.2.0.0.p/data_Strand.cpp.o src/libpbcopper.so.2.0.0.p/logging_Logging.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogConfig.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogLevel.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogMessage.cpp.o src/libpbcopper.so.2.0.0.p/math_FishersExact.cpp.o src/libpbcopper.so.2.0.0.p/parallel_FireAndForget.cpp.o src/libpbcopper.so.2.0.0.p/parallel_ThreadCount.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Dbg.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_DbgNode.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_DnaBit.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Kmer.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_KFGraph.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_KFNode.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Mers.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_SparseHaplotype.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Parser.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaAlignmentMatrix.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaConsensus.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraph.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraphImpl.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraphTraversals.cpp.o src/libpbcopper.so.2.0.0.p/poa_RangeFinder.cpp.o src/libpbcopper.so.2.0.0.p/poa_SparsePoa.cpp.o src/libpbcopper.so.2.0.0.p/reports_Report.cpp.o src/libpbcopper.so.2.0.0.p/reports_ReportPrinter.cpp.o src/libpbcopper.so.2.0.0.p/reports_TaskReport.cpp.o src/libpbcopper.so.2.0.0.p/third-party_base64_base64.cpp.o src/libpbcopper.so.2.0.0.p/third-party_edlib_edlib.cpp.o src/libpbcopper.so.2.0.0.p/third-party_htslib_kfunc.c.o src/libpbcopper.so.2.0.0.p/third-party_ksw2_kalloc.c.o src/libpbcopper.so.2.0.0.p/third-party_ksw2_ksw2_simde.c.o src/libpbcopper.so.2.0.0.p/third-party_sparc_sparc.cpp.o src/libpbcopper.so.2.0.0.p/third-party_sparc_sparcSimple.cpp.o src/libpbcopper.so.2.0.0.p/utility_Alarm.cpp.o src/libpbcopper.so.2.0.0.p/utility_Base64.cpp.o src/libpbcopper.so.2.0.0.p/utility_Deleters.cpp.o src/libpbcopper.so.2.0.0.p/utility_MemoryConsumption.cpp.o src/libpbcopper.so.2.0.0.p/utility_Stopwatch.cpp.o src/libpbcopper.so.2.0.0.p/utility_StringUtils.cpp.o src/libpbcopper.so.2.0.0.p/utility_TimeReporter.cpp.o src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o -Wl,--as-needed -Wl,--no-undefined -shared -fPIC -Wl,--start-group -Wl,-soname,libpbcopper.so.2.0.0 -Wl,--end-group -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread [143/164] /usr/bin/meson --internal symbolextractor /build/pbcopper-2.0.0+dfsg/build src/libpbcopper.so.2.0.0 src/libpbcopper.so.2.0.0 src/libpbcopper.so.2.0.0.p/libpbcopper.so.2.0.0.symbols [144/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o -c ../tests/src/pbmer/test_KFGraph.cpp [145/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Base64.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Base64.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Base64.cpp.o -c ../tests/src/utility/test_Base64.cpp [146/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Read.cpp.o -MF tests/pbcopper_test.p/src_data_test_Read.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Read.cpp.o -c ../tests/src/data/test_Read.cpp [147/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o -MF tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o -c ../tests/src/utility/test_FileUtils.cpp [148/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o -c ../tests/src/utility/test_Alarm.cpp [149/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o -MF tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o -c ../tests/src/utility/test_OStreamRedirect.cpp [150/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC 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-Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o -c ../tests/src/utility/test_Ssize.cpp [154/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 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-fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o -c ../tests/src/utility/test_Shuffle.cpp [158/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 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tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o -c ../tests/src/utility/test_TimeReporter.cpp [160/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o -MF tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o.d -o tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o -c ../tests/src/third-party/sparc/test_SparcConsensus.cpp [161/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o -MF tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o -c ../tests/src/utility/test_StringUtils.cpp [162/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat 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tests/pbcopper_test.p/src_cli2_test_PositionalArgumentTranslator.cpp.o tests/pbcopper_test.p/src_cli2_test_Results.cpp.o tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o tests/pbcopper_test.p/src_data_test_Cigar.cpp.o tests/pbcopper_test.p/src_data_test_Frames.cpp.o tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o tests/pbcopper_test.p/src_data_test_Interval.cpp.o tests/pbcopper_test.p/src_data_test_IntervalTree.cpp.o tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o tests/pbcopper_test.p/src_data_test_MovieName.cpp.o tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o tests/pbcopper_test.p/src_data_test_Read.cpp.o tests/pbcopper_test.p/src_data_test_ReadName.cpp.o tests/pbcopper_test.p/src_data_test_RSMovieName.cpp.o tests/pbcopper_test.p/src_data_test_RSReadName.cpp.o tests/pbcopper_test.p/src_data_test_SNR.cpp.o tests/pbcopper_test.p/src_json_test_JSON.cpp.o tests/pbcopper_test.p/src_library_test_Library.cpp.o tests/pbcopper_test.p/src_logging_test_Logging.cpp.o tests/pbcopper_test.p/src_math_test_ConfusionMatrix.cpp.o tests/pbcopper_test.p/src_math_test_FishersExact.cpp.o tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o tests/pbcopper_test.p/src_pbmer_test_Kmer.cpp.o tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o tests/pbcopper_test.p/src_qgram_test_Index.cpp.o tests/pbcopper_test.p/src_reports_test_Report.cpp.o tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o tests/pbcopper_test.p/src_utility_test_Base64.cpp.o tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 '-Wl,-rpath,$ORIGIN/../src' -Wl,-rpath-link,/build/pbcopper-2.0.0+dfsg/build/src -Wl,--start-group src/libpbcopper.so.2.0.0 /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a -lpthread -Wl,--end-group -pthread debian/rules override_dh_auto_test make[1]: Entering directory '/build/pbcopper-2.0.0+dfsg' cd build && meson test --no-rebuild --print-errorlogs 1/3 pbcopper formatting check OK 0.23s 2/3 pbcopper EOF check OK 9.97s 3/3 pbcopper gtest unittests OK 25.24s Ok: 3 Expected Fail: 0 Fail: 0 Unexpected Pass: 0 Skipped: 0 Timeout: 0 Full log written to /build/pbcopper-2.0.0+dfsg/build/meson-logs/testlog.txt make[1]: Leaving directory '/build/pbcopper-2.0.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build dh_auto_install -O--builddirectory=build cd build && DESTDIR=/build/pbcopper-2.0.0\+dfsg/debian/tmp LC_ALL=C.UTF-8 ninja install [1/9] Generating src/LibraryGitHash.h with a custom command [2/8] Generating src/utility/PbcopperGitHash.cpp with a custom command [2/3] Installing files. Installing src/libpbcopper.so.2.0.0 to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu Installing src/libpbcopper.a to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/LibraryInfo.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/PbcopperConfig.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/algorithm/Heteroduplex.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/algorithm/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/algorithm/internal/HeteroduplexUtils.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/algorithm/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/align/AffineAlignment.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/align/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/align/AlignConfig.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/align/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/align/BandedChainAlignment.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/align/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/align/ChainSeeds.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/align/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/align/ChainSeedsConfig.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/align/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/align/EdlibAlign.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/align/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/align/FindSeeds.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/align/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/align/GlobalLocalAlignment.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/align/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/align/LinearAlignment.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/align/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/align/LocalAlignment.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/align/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/align/PairwiseAlignment.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/align/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/align/Seed.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/align/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/align/Seeds.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/align/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/align/SparseAlignment.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/align/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/align/internal/BCAlignBlocks.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/align/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/align/internal/BCAlignImpl.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/align/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/CLI.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/Interface.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/MultiToolInterface.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/Option.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/OptionValue.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/OptionGroup.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/PositionalArgument.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/Result.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/Results.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/ResultsHandler.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/Tool.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/VersionPrinterCallback.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/internal/BuiltinOptions.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/internal/CommandLineParser.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/internal/HelpMetrics.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/internal/HiddenOptionMode.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/internal/InterfaceData.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/internal/InterfaceHelpPrinter.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/internal/MultiToolInterfaceData.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/internal/MultiToolInterfaceHelpPrinter.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/internal/OptionData.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/internal/OptionTranslator.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/internal/PositionalArgumentData.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/internal/PositionalArgumentTranslator.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/cli2/internal/VersionPrinter.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/dagcon/Alignment.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/dagcon/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/dagcon/AlignmentGraph.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/dagcon/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/Accuracy.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/CCSTag.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/Cigar.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/CigarOperation.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/Clipping.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/FrameCodec.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/FrameEncoders.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/Frames.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/GenomicInterval.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/Interval.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/IntervalTree.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/LocalContextFlags.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/MappedRead.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/MovieName.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/Orientation.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/Position.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/QualityValue.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/QualityValues.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/Read.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/ReadId.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/ReadName.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/RSMovieName.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/RSReadName.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/SNR.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/Strand.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/Zmw.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/internal/ClippingImpl.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/internal/MovieName-inl.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/internal/ReadNameBase-inl.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/internal/ReadNameBase.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/data/internal/RSMovieName-inl.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/json/JSON.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/json/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/json/internal/json.hpp to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/json/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/library/Bundle.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/library/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/library/Info.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/library/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/logging/Logging.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/logging/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/logging/LogConfig.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/logging/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/logging/LogField.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/logging/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/logging/LogLevel.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/logging/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/logging/LogMessage.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/logging/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/math/ConfusionMatrix.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/math/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/math/FishersExact.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/math/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/parallel/FireAndForget.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/parallel/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/parallel/FireAndForgetIndexed.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/parallel/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/parallel/ThreadCount.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/parallel/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/parallel/WorkQueue.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/parallel/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/pbmer/Bubble.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/pbmer/Dbg.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/pbmer/DbgNode.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/pbmer/DnaBit.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/pbmer/Kmer.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/pbmer/Mers.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/pbmer/Parser.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/pbmer/SparseHaplotype.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/pbmer/KFGraph.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/pbmer/KFNode.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/poa/PoaConsensus.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/poa/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/poa/PoaGraph.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/poa/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/poa/RangeFinder.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/poa/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/poa/SparsePoa.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/poa/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/reports/Report.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/reports/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/qgram/Index.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/qgram/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/qgram/IndexHit.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/qgram/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/qgram/IndexHits.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/qgram/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/qgram/internal/Hashing-inl.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/qgram/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/qgram/internal/Index-inl.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/qgram/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/third-party/edlib.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/third-party/htslib/kfunc.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/htslib/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/third-party/kxsort/kxsort.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/kxsort/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/third-party/ksw2/kalloc.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/ksw2/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/third-party/ksw2/ksw2.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/ksw2/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/third-party/robin_hood/robin_hood.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/robin_hood/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/third-party/sparc/sparc.hpp to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/sparc/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/utility/Alarm.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/utility/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/utility/Base64.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/utility/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/utility/Deleters.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/utility/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/utility/FileUtils.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/utility/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/utility/MemoryConsumption.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/utility/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/utility/MinMax.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/utility/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/utility/MoveAppend.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/utility/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/utility/MoveInsert.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/utility/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/utility/OStreamRedirect.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/utility/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/utility/PartitionElements.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/utility/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/utility/PbcopperVersion.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/utility/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/utility/SafeSubtract.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/utility/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/utility/SequenceUtils.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/utility/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/utility/Shuffle.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/utility/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/utility/Ssize.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/utility/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/utility/Stopwatch.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/utility/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/utility/StringUtils.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/utility/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/utility/TimeReporter.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/utility/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/utility/Unused.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/utility/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/utility/internal/FileUtils-inl.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/utility/internal/ Installing /build/pbcopper-2.0.0+dfsg/include/pbcopper/utility/internal/Stopwatch-inl.h to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/include/pbcopper/utility/internal/ Installing /build/pbcopper-2.0.0+dfsg/build/meson-private/pbcopper.pc to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig Installing symlink pointing to libpbcopper.so.2.0.0 to /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libpbcopper.so debian/rules override_dh_install make[1]: Entering directory '/build/pbcopper-2.0.0+dfsg' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include usr \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libpbcopper-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libpbcopper2.0.0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libpbcopper.a debian/libpbcopper-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libpbcopper.so debian/libpbcopper-dev/usr/lib/x86_64-linux-gnu mv /build/pbcopper-2.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libpbcopper.so.2.0.0 debian/libpbcopper2.0.0/usr/lib/x86_64-linux-gnu PKGDEV=libpbcopper-dev PKGSHL=libpbcopper2.0.0 install -d -m 755 debian/libpbcopper-dev/usr mv debian/tmp/usr/include debian/libpbcopper-dev/usr install -d -m 755 debian/libpbcopper-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libpbcopper-dev/usr/lib/x86_64-linux-gnu/pkgconfig make[1]: Leaving directory '/build/pbcopper-2.0.0+dfsg' dh_installdocs -O--builddirectory=build dh_installchangelogs -O--builddirectory=build dh_installsystemduser -O--builddirectory=build dh_perl -O--builddirectory=build dh_link -O--builddirectory=build dh_strip_nondeterminism -O--builddirectory=build dh_compress -O--builddirectory=build dh_fixperms -O--builddirectory=build dh_missing -O--builddirectory=build dh_dwz -a -O--builddirectory=build dh_strip -a -O--builddirectory=build dh_makeshlibs -a -O--builddirectory=build dh_shlibdeps -a -O--builddirectory=build dh_installdeb -O--builddirectory=build dh_gencontrol -O--builddirectory=build dpkg-gencontrol: warning: Depends field of package libpbcopper-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--builddirectory=build dh_builddeb -O--builddirectory=build dpkg-deb: building package 'libpbcopper2.0.0-dbgsym' in '../libpbcopper2.0.0-dbgsym_2.0.0+dfsg-2_amd64.deb'. dpkg-deb: building package 'libpbcopper2.0.0' in '../libpbcopper2.0.0_2.0.0+dfsg-2_amd64.deb'. dpkg-deb: building package 'libpbcopper-dev' in '../libpbcopper-dev_2.0.0+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../pbcopper_2.0.0+dfsg-2_amd64.buildinfo dpkg-genchanges --build=binary -O../pbcopper_2.0.0+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3588383 and its subdirectories I: Current time: Sat Jun 3 22:52:06 -12 2023 I: pbuilder-time-stamp: 1685875926