I: pbuilder: network access will be disabled during build I: Current time: Thu Jun 13 15:11:10 -12 2024 I: pbuilder-time-stamp: 1718334670 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [obitools_1.2.13+dfsg-5.dsc] I: copying [./obitools_1.2.13+dfsg.orig.tar.xz] I: copying [./obitools_1.2.13+dfsg-5.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Oct 23 18:43:26 2022 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./obitools_1.2.13+dfsg-5.dsc: no acceptable signature found dpkg-source: info: extracting obitools in obitools-1.2.13+dfsg dpkg-source: info: unpacking obitools_1.2.13+dfsg.orig.tar.xz dpkg-source: info: unpacking obitools_1.2.13+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_libs dpkg-source: info: applying fix_path_interpreter dpkg-source: info: applying 2to3.patch dpkg-source: info: applying port_python3.patch dpkg-source: info: applying deocde-bytes-to-str.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3383425/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='2c26c6110d9d46bb97084f0c5c366c3b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3383425' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.hXJX6t9R/pbuilderrc_LFN4 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.hXJX6t9R/b1 --logfile b1/build.log obitools_1.2.13+dfsg-5.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 2023 more -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/3383425/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-dev, python3-sphinx, cython3, ipython3, python3-wheel, python3-virtualenv dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on ipython3; however: Package ipython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-wheel; however: Package python3-wheel is not installed. pbuilder-satisfydepends-dummy depends on python3-virtualenv; however: Package python3-virtualenv is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} ipython3{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} openssl{a} po-debconf{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-asttokens{a} python3-babel{a} python3-backcall{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-decorator{a} python3-dev{a} python3-distlib{a} python3-distutils{a} python3-docutils{a} python3-executing{a} python3-filelock{a} python3-idna{a} python3-imagesize{a} python3-ipython{a} python3-jedi{a} python3-jinja2{a} python3-lib2to3{a} python3-markupsafe{a} python3-matplotlib-inline{a} python3-minimal{a} python3-packaging{a} python3-parso{a} python3-pexpect{a} python3-pickleshare{a} python3-pip-whl{a} python3-pkg-resources{a} python3-platformdirs{a} python3-prompt-toolkit{a} python3-ptyprocess{a} python3-pure-eval{a} python3-pygments{a} python3-requests{a} python3-roman{a} python3-setuptools{a} python3-setuptools-whl{a} python3-six{a} python3-snowballstemmer{a} python3-sphinx{a} python3-stack-data{a} python3-traitlets{a} python3-tz{a} python3-urllib3{a} python3-virtualenv{a} python3-wcwidth{a} python3-wheel{a} python3-wheel-whl{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-matplotlib python3-pil wget 0 packages upgraded, 109 newly installed, 0 to remove and 0 not upgraded. Need to get 51.7 MB of archives. After unpacking 213 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.8-1 [1407 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 cython3 amd64 0.29.32-2+b1 [1302 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 docutils-common all 0.19+dfsg-6 [127 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 python3-backcall all 0.2.0-4 [12.1 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 python3-parso all 0.8.3-1 [67.4 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 python3-jedi all 0.18.2-1 [689 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 python3-traitlets all 5.5.0-1 [92.4 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 python3-matplotlib-inline all 0.1.6-2 [8652 B] Get: 57 http://deb.debian.org/debian bookworm/main amd64 python3-ptyprocess all 0.7.0-5 [14.7 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 python3-pexpect all 4.8.0-4 [52.9 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 python3-pickleshare all 0.7.5-5 [7600 B] Get: 60 http://deb.debian.org/debian bookworm/main amd64 python3-wcwidth all 0.2.5+dfsg1-1.1 [21.4 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 python3-prompt-toolkit all 3.0.36-2 [276 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 python3-pygments all 2.14.0+dfsg-1 [783 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 python3-asttokens all 2.2.1-1 [19.8 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 python3-executing all 1.2.0-2 [22.6 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 python3-pure-eval all 0.2.2-1 [11.2 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 python3-stack-data all 0.6.2-3 [21.8 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 python3-ipython all 8.5.0-4 [517 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 ipython3 all 8.5.0-4 [22.7 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get: 81 http://deb.debian.org/debian bookworm/main amd64 python-babel-localedata all 2.10.3-1 [5615 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 python3-alabaster all 0.7.12-1 [20.8 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7.1-3 [30.1 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 python3-babel all 2.10.3-1 [103 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 python3-certifi all 2022.9.24-1 [153 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 python3-distlib all 0.3.6-1 [257 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 python3-roman all 3.3-3 [9880 B] Get: 92 http://deb.debian.org/debian bookworm/main amd64 python3-docutils all 0.19+dfsg-6 [382 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 python3-filelock all 3.9.0-1 [9460 B] Get: 94 http://deb.debian.org/debian bookworm/main amd64 python3-idna all 3.3-1 [39.4 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 96 http://deb.debian.org/debian bookworm/main amd64 python3-markupsafe amd64 2.1.2-1+b1 [13.2 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 python3-jinja2 all 3.1.2-1 [119 kB] Get: 98 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 python3-pip-whl all 23.0.1+dfsg-1 [1717 kB] Get: 100 http://deb.debian.org/debian bookworm/main amd64 python3-platformdirs all 2.6.0-1 [16.3 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 python3-urllib3 all 1.26.12-1 [117 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools-whl all 66.1.1-1 [1111 kB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 python3-snowballstemmer all 2.2.0-2 [57.8 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 sphinx-common all 5.3.0-4 [653 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 python3-sphinx all 5.3.0-4 [549 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 python3-wheel-whl all 0.38.4-2 [38.6 kB] Get: 108 http://deb.debian.org/debian bookworm/main amd64 python3-virtualenv all 20.17.1+ds-1 [93.9 kB] Get: 109 http://deb.debian.org/debian bookworm/main amd64 python3-wheel all 0.38.4-2 [30.8 kB] Fetched 51.7 MB in 12s (4453 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19912 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../3-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_amd64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20346 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../01-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../03-openssl_3.0.8-1_amd64.deb ... Unpacking openssl (3.0.8-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../04-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../06-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../08-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../09-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../10-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../11-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../12-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../13-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../14-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../15-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../16-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../17-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../18-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package cython3. Preparing to unpack .../19-cython3_0.29.32-2+b1_amd64.deb ... Unpacking cython3 (0.29.32-2+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../20-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. 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Selecting previously unselected package libelf1:amd64. Preparing to unpack .../27-libelf1_0.188-2.1_amd64.deb ... Unpacking libelf1:amd64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../28-dwz_0.15-1_amd64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../29-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../30-libxml2_2.9.14+dfsg-1.2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../31-gettext_0.21-12_amd64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../32-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. 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Unpacking docutils-common (0.19+dfsg-6) ... Selecting previously unselected package python3-backcall. Preparing to unpack .../40-python3-backcall_0.2.0-4_all.deb ... Unpacking python3-backcall (0.2.0-4) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../41-python3-decorator_5.1.1-3_all.deb ... Unpacking python3-decorator (5.1.1-3) ... Selecting previously unselected package python3-parso. Preparing to unpack .../42-python3-parso_0.8.3-1_all.deb ... Unpacking python3-parso (0.8.3-1) ... Selecting previously unselected package python3-jedi. Preparing to unpack .../43-python3-jedi_0.18.2-1_all.deb ... Unpacking python3-jedi (0.18.2-1) ... Selecting previously unselected package python3-traitlets. Preparing to unpack .../44-python3-traitlets_5.5.0-1_all.deb ... Unpacking python3-traitlets (5.5.0-1) ... Selecting previously unselected package python3-matplotlib-inline. Preparing to unpack .../45-python3-matplotlib-inline_0.1.6-2_all.deb ... Unpacking python3-matplotlib-inline (0.1.6-2) ... Selecting previously unselected package python3-ptyprocess. Preparing to unpack .../46-python3-ptyprocess_0.7.0-5_all.deb ... Unpacking python3-ptyprocess (0.7.0-5) ... Selecting previously unselected package python3-pexpect. Preparing to unpack .../47-python3-pexpect_4.8.0-4_all.deb ... Unpacking python3-pexpect (4.8.0-4) ... Selecting previously unselected package python3-pickleshare. Preparing to unpack .../48-python3-pickleshare_0.7.5-5_all.deb ... Unpacking python3-pickleshare (0.7.5-5) ... Selecting previously unselected package python3-wcwidth. Preparing to unpack .../49-python3-wcwidth_0.2.5+dfsg1-1.1_all.deb ... Unpacking python3-wcwidth (0.2.5+dfsg1-1.1) ... Selecting previously unselected package python3-prompt-toolkit. Preparing to unpack .../50-python3-prompt-toolkit_3.0.36-2_all.deb ... Unpacking python3-prompt-toolkit (3.0.36-2) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../51-python3-pkg-resources_66.1.1-1_all.deb ... Unpacking python3-pkg-resources (66.1.1-1) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../52-python3-pygments_2.14.0+dfsg-1_all.deb ... Unpacking python3-pygments (2.14.0+dfsg-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../53-python3-six_1.16.0-4_all.deb ... Unpacking python3-six (1.16.0-4) ... Selecting previously unselected package python3-asttokens. Preparing to unpack .../54-python3-asttokens_2.2.1-1_all.deb ... Unpacking python3-asttokens (2.2.1-1) ... Selecting previously unselected package python3-executing. Preparing to unpack .../55-python3-executing_1.2.0-2_all.deb ... Unpacking python3-executing (1.2.0-2) ... Selecting previously unselected package python3-pure-eval. Preparing to unpack .../56-python3-pure-eval_0.2.2-1_all.deb ... Unpacking python3-pure-eval (0.2.2-1) ... Selecting previously unselected package python3-stack-data. Preparing to unpack .../57-python3-stack-data_0.6.2-3_all.deb ... Unpacking python3-stack-data (0.6.2-3) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../58-python3-setuptools_66.1.1-1_all.deb ... Unpacking python3-setuptools (66.1.1-1) ... Selecting previously unselected package python3-ipython. Preparing to unpack .../59-python3-ipython_8.5.0-4_all.deb ... Unpacking python3-ipython (8.5.0-4) ... Selecting previously unselected package ipython3. Preparing to unpack .../60-ipython3_8.5.0-4_all.deb ... Unpacking ipython3 (8.5.0-4) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../61-libexpat1-dev_2.5.0-1_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.5.0-1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../62-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../63-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../64-libjs-sphinxdoc_5.3.0-4_all.deb ... Unpacking libjs-sphinxdoc (5.3.0-4) ... Selecting previously unselected package libjson-perl. Preparing to unpack .../65-libjson-perl_4.10000-1_all.deb ... Unpacking libjson-perl (4.10000-1) ... Selecting previously unselected package libpython3.11:amd64. Preparing to unpack .../66-libpython3.11_3.11.2-6_amd64.deb ... Unpacking libpython3.11:amd64 (3.11.2-6) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../67-zlib1g-dev_1%3a1.2.13.dfsg-1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Selecting previously unselected package libpython3.11-dev:amd64. Preparing to unpack .../68-libpython3.11-dev_3.11.2-6_amd64.deb ... Unpacking libpython3.11-dev:amd64 (3.11.2-6) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../69-libpython3-dev_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-dev:amd64 (3.11.2-1+b1) ... Selecting previously unselected package python-babel-localedata. Preparing to unpack .../70-python-babel-localedata_2.10.3-1_all.deb ... Unpacking python-babel-localedata (2.10.3-1) ... Selecting previously unselected package python3-alabaster. Preparing to unpack .../71-python3-alabaster_0.7.12-1_all.deb ... Unpacking python3-alabaster (0.7.12-1) ... Selecting previously unselected package python3-tz. Preparing to unpack .../72-python3-tz_2022.7.1-3_all.deb ... Unpacking python3-tz (2022.7.1-3) ... Selecting previously unselected package python3-babel. Preparing to unpack .../73-python3-babel_2.10.3-1_all.deb ... Unpacking python3-babel (2.10.3-1) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../74-python3-certifi_2022.9.24-1_all.deb ... Unpacking python3-certifi (2022.9.24-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../75-python3-chardet_5.1.0+dfsg-2_all.deb ... Unpacking python3-chardet (5.1.0+dfsg-2) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../76-python3-charset-normalizer_3.0.1-2_all.deb ... Unpacking python3-charset-normalizer (3.0.1-2) ... Selecting previously unselected package python3.11-dev. Preparing to unpack .../77-python3.11-dev_3.11.2-6_amd64.deb ... Unpacking python3.11-dev (3.11.2-6) ... Selecting previously unselected package python3-dev. Preparing to unpack .../78-python3-dev_3.11.2-1+b1_amd64.deb ... Unpacking python3-dev (3.11.2-1+b1) ... Selecting previously unselected package python3-distlib. Preparing to unpack .../79-python3-distlib_0.3.6-1_all.deb ... Unpacking python3-distlib (0.3.6-1) ... Selecting previously unselected package python3-roman. Preparing to unpack .../80-python3-roman_3.3-3_all.deb ... Unpacking python3-roman (3.3-3) ... Selecting previously unselected package python3-docutils. Preparing to unpack .../81-python3-docutils_0.19+dfsg-6_all.deb ... Unpacking python3-docutils (0.19+dfsg-6) ... Selecting previously unselected package python3-filelock. Preparing to unpack .../82-python3-filelock_3.9.0-1_all.deb ... Unpacking python3-filelock (3.9.0-1) ... Selecting previously unselected package python3-idna. Preparing to unpack .../83-python3-idna_3.3-1_all.deb ... Unpacking python3-idna (3.3-1) ... Selecting previously unselected package python3-imagesize. Preparing to unpack .../84-python3-imagesize_1.4.1-1_all.deb ... Unpacking python3-imagesize (1.4.1-1) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../85-python3-markupsafe_2.1.2-1+b1_amd64.deb ... Unpacking python3-markupsafe (2.1.2-1+b1) ... Selecting previously unselected package python3-jinja2. Preparing to unpack .../86-python3-jinja2_3.1.2-1_all.deb ... Unpacking python3-jinja2 (3.1.2-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../87-python3-packaging_23.0-1_all.deb ... Unpacking python3-packaging (23.0-1) ... Selecting previously unselected package python3-pip-whl. Preparing to unpack .../88-python3-pip-whl_23.0.1+dfsg-1_all.deb ... Unpacking python3-pip-whl (23.0.1+dfsg-1) ... Selecting previously unselected package python3-platformdirs. Preparing to unpack .../89-python3-platformdirs_2.6.0-1_all.deb ... Unpacking python3-platformdirs (2.6.0-1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../90-python3-urllib3_1.26.12-1_all.deb ... Unpacking python3-urllib3 (1.26.12-1) ... Selecting previously unselected package python3-requests. Preparing to unpack .../91-python3-requests_2.28.1+dfsg-1_all.deb ... Unpacking python3-requests (2.28.1+dfsg-1) ... Selecting previously unselected package python3-setuptools-whl. 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Selecting previously unselected package python3-wheel. Preparing to unpack .../98-python3-wheel_0.38.4-2_all.deb ... Unpacking python3-wheel (0.38.4-2) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up python3-setuptools-whl (66.1.1-1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up python-babel-localedata (2.10.3-1) ... Setting up autotools-dev (20220109.1) ... Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up autopoint (0.21-12) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libjson-perl (4.10000-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up sgml-base (1.31) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.0.8-1) ... Setting up python3-wheel-whl (0.38.4-2) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up xml-core (0.18+nmu1) ... Setting up python3-pip-whl (23.0.1+dfsg-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up sphinx-common (5.3.0-4) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libpython3.11:amd64 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-distlib (0.3.6-1) ... Setting up python3-markupsafe (2.1.2-1+b1) ... Setting up python3-platformdirs (2.6.0-1) ... Setting up python3-tz (2022.7.1-3) ... Setting up python3-six (1.16.0-4) ... Setting up python3-roman (3.3-3) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-jinja2 (3.1.2-1) ... Setting up python3-packaging (23.0-1) ... Setting up python3-wcwidth (0.2.5+dfsg1-1.1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-snowballstemmer (2.2.0-2) ... Setting up libpython3.11-dev:amd64 (3.11.2-6) ... Setting up python3-idna (3.3-1) ... Setting up cython3 (0.29.32-2+b1) ... Setting up python3-pickleshare (0.7.5-5) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up python3-traitlets (5.5.0-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-ptyprocess (0.7.0-5) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-prompt-toolkit (3.0.36-2) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up python3-pure-eval (0.2.2-1) ... Setting up python3-filelock (3.9.0-1) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-backcall (0.2.0-4) ... Setting up python3-parso (0.8.3-1) ... Setting up python3-babel (2.10.3-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-asttokens (2.2.1-1) ... Setting up python3.11-dev (3.11.2-6) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-alabaster (0.7.12-1) ... Setting up python3-virtualenv (20.17.1+ds-1) ... Setting up python3-wheel (0.38.4-2) ... Setting up python3-matplotlib-inline (0.1.6-2) ... Setting up python3-pygments (2.14.0+dfsg-1) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up python3-executing (1.2.0-2) ... Setting up python3-pexpect (4.8.0-4) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up python3-stack-data (0.6.2-3) ... Setting up python3-jedi (0.18.2-1) ... Setting up python3-ipython (8.5.0-4) ... Setting up ipython3 (8.5.0-4) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.19+dfsg-6) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.19+dfsg-6) ... Setting up python3-sphinx (5.3.0-4) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/obitools-1.2.13+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../obitools_1.2.13+dfsg-5_source.changes dpkg-buildpackage: info: source package obitools dpkg-buildpackage: info: source version 1.2.13+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/obitools-1.2.13+dfsg' # skip it make[1]: Leaving directory '/build/obitools-1.2.13+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/obitools-1.2.13+dfsg' dh_clean rm -rf build rm -f doc/sphinx/build_dir.txt rm -rf src/OBITools.egg-info make[1]: Leaving directory '/build/obitools-1.2.13+dfsg' debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config ['src/obitools/_obitools.pyx'] ['src/obitools/fastq/_fastq.pyx'] ['src/obitools/format/_format.pyx'] ['src/obitools/format/genericparser/_genericparser.pyx'] ['src/obitools/word/_binary.pyx'] @@@@> ['src/obitools/word/_readindex.h'] ['src/obitools/word/_readindex.pyx'] ['src/obitools/profile/_profile.pyx'] ['src/obitools/align/_qsrassemble.pyx'] ['src/obitools/align/_qsassemble.pyx'] @@@@> ['src/obitools/align/_lcs.h'] ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.4.c'] ['src/obitools/align/_freeendgapfm.pyx'] ['src/obitools/align/_profilenws.pyx'] ['src/obitools/align/_nwsdnabyprot.pyx'] ['src/obitools/align/_assemble.pyx'] ['src/obitools/align/_rassemble.pyx'] @@@@> ['src/obitools/align/_sse.h'] ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] ['src/obitools/align/_gprofilenws.pyx'] ['src/obitools/align/_freeendgap.pyx'] ['src/obitools/align/_nws.pyx'] ['src/obitools/align/_dynamic.pyx'] ['src/obitools/align/_codonnws.pyx'] ['src/obitools/fasta/_fasta.pyx'] ['src/obitools/utils/_utils.pyx'] ['src/obitools/tools/_solexapairend.pyx'] ['src/obitools/options/_options.pyx'] ['src/obitools/options/_bioseqfilter.pyx'] running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build ['src/obitools/_obitools.pyx'] ['src/obitools/fastq/_fastq.pyx'] ['src/obitools/format/_format.pyx'] ['src/obitools/format/genericparser/_genericparser.pyx'] ['src/obitools/word/_binary.pyx'] @@@@> ['src/obitools/word/_readindex.h'] ['src/obitools/word/_readindex.pyx'] ['src/obitools/profile/_profile.pyx'] ['src/obitools/align/_qsrassemble.pyx'] ['src/obitools/align/_qsassemble.pyx'] @@@@> ['src/obitools/align/_lcs.h'] ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.4.c'] ['src/obitools/align/_freeendgapfm.pyx'] ['src/obitools/align/_profilenws.pyx'] ['src/obitools/align/_nwsdnabyprot.pyx'] ['src/obitools/align/_assemble.pyx'] ['src/obitools/align/_rassemble.pyx'] @@@@> ['src/obitools/align/_sse.h'] ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] ['src/obitools/align/_gprofilenws.pyx'] ['src/obitools/align/_freeendgap.pyx'] ['src/obitools/align/_nws.pyx'] ['src/obitools/align/_dynamic.pyx'] ['src/obitools/align/_codonnws.pyx'] ['src/obitools/fasta/_fasta.pyx'] ['src/obitools/utils/_utils.pyx'] ['src/obitools/tools/_solexapairend.pyx'] ['src/obitools/options/_options.pyx'] ['src/obitools/options/_bioseqfilter.pyx'] running build Running obidistutils build process running littlebigman creating build creating build/temp.linux-x86_64-cpython-311 building 'littlebigman' program creating build/temp.linux-x86_64-cpython-311/distutils.ext creating build/temp.linux-x86_64-cpython-311/distutils.ext/src x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c distutils.ext/src/littlebigman.c -o build/temp.linux-x86_64-cpython-311/distutils.ext/src/littlebigman.o -msse2 distutils.ext/src/littlebigman.c: In function 'main': distutils.ext/src/littlebigman.c:20:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 20 | else | ^~~~ distutils.ext/src/littlebigman.c:23:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 23 | return 0; | ^~~~~~ x86_64-linux-gnu-gcc build/temp.linux-x86_64-cpython-311/distutils.ext/src/littlebigman.o -o build/temp.linux-x86_64-cpython-311/littlebigman Your CPU is in mode : b'-DLITTLE_END' running build_py creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools copying src/obitools/SVGdraw.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools copying src/obitools/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools copying src/obitools/zipfile.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools copying src/obitools/svg.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools copying src/obitools/solexaPairEnd.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools copying src/obitools/sample.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools copying src/obitools/gzip.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools copying src/obitools/fast.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools copying src/obitools/collections.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools copying src/obitools/decorator.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools copying src/obitools/version.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/taxonomy.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/rawdata.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/ecotag.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/databases.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecobarcode copying src/obitools/ecobarcode/options.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecobarcode creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fastq copying src/obitools/fastq/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fastq creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/distances copying src/obitools/distances/r.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/distances copying src/obitools/distances/phylip.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/distances copying src/obitools/distances/observed.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/distances copying src/obitools/distances/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/distances creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/blast copying src/obitools/blast/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/blast creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format copying src/obitools/format/options.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format copying src/obitools/format/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/genericparser copying src/obitools/format/genericparser/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/genericparser creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/fnaqual.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/fasta.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/genbank.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/tagmatcher.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/fastq.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/sequence copying src/obitools/format/sequence/embl.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/sequence creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/ontology copying src/obitools/format/ontology/go_obo.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/ontology copying src/obitools/format/ontology/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/ontology creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/word copying src/obitools/word/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/word copying src/obitools/word/predicate.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/word copying src/obitools/word/options.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/word creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/alignment copying src/obitools/alignment/ace.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/alignment copying src/obitools/alignment/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/alignment creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/interactive copying src/obitools/interactive/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/interactive creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tagmatcher copying src/obitools/tagmatcher/parser.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tagmatcher copying src/obitools/tagmatcher/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tagmatcher copying src/obitools/tagmatcher/options.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tagmatcher creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb copying src/obitools/seqdb/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb copying src/obitools/seqdb/dnaparser.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/genbank copying src/obitools/seqdb/genbank/parser.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/genbank copying src/obitools/seqdb/genbank/ncbi.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/genbank copying src/obitools/seqdb/genbank/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/genbank creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/embl copying src/obitools/seqdb/embl/parser.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/embl copying src/obitools/seqdb/embl/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/embl creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/blastdb copying src/obitools/seqdb/blastdb/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/blastdb creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/table copying src/obitools/table/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/table copying src/obitools/table/csv.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/table creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/profile copying src/obitools/profile/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/profile creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecopcr copying src/obitools/ecopcr/taxonomy.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecopcr copying src/obitools/ecopcr/sequence.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecopcr copying src/obitools/ecopcr/options.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecopcr copying src/obitools/ecopcr/annotation.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecopcr copying src/obitools/ecopcr/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecopcr creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align copying src/obitools/align/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align copying src/obitools/align/ssearch.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align copying src/obitools/align/homopolymere.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obo copying src/obitools/obo/parser.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obo copying src/obitools/obo/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obo creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obo/go copying src/obitools/obo/go/parser.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obo/go copying src/obitools/obo/go/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obo/go creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/carto copying src/obitools/carto/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/carto creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/dnahash copying src/obitools/dnahash/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/dnahash creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/thermo copying src/obitools/thermo/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/thermo creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fasta copying src/obitools/fasta/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fasta creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/utils copying src/obitools/utils/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/utils copying src/obitools/utils/crc64.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/utils copying src/obitools/utils/bioseq.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/utils copying src/obitools/utils/iterator.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/utils creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/goa copying src/obitools/goa/parser.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/goa copying src/obitools/goa/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/goa creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecotag copying src/obitools/ecotag/parser.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecotag copying src/obitools/ecotag/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecotag creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph copying src/obitools/graph/rootedtree.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph copying src/obitools/graph/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph copying src/obitools/graph/dag.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph copying src/obitools/graph/tree.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/algorithms copying src/obitools/graph/algorithms/compact.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/algorithms copying src/obitools/graph/algorithms/clique.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/algorithms copying src/obitools/graph/algorithms/component.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/algorithms copying src/obitools/graph/algorithms/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/algorithms creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/layout copying src/obitools/graph/layout/radialtree.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/layout copying src/obitools/graph/layout/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/layout creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/writeBcTree.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/drawBcTree.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/calcBc.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/readFiles.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/findErrors.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/barcodecoverage copying src/obitools/barcodecoverage/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/barcodecoverage creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fnaqual copying src/obitools/fnaqual/quality.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fnaqual copying src/obitools/fnaqual/fasta.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fnaqual copying src/obitools/fnaqual/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fnaqual creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/location copying src/obitools/location/feature.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/location copying src/obitools/location/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/location creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/solexa copying src/obitools/solexa/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/solexa creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obischemas copying src/obitools/obischemas/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obischemas copying src/obitools/obischemas/options.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obischemas creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obischemas/kb copying src/obitools/obischemas/kb/extern.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obischemas/kb copying src/obitools/obischemas/kb/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obischemas/kb creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/metabarcoding copying src/obitools/metabarcoding/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/metabarcoding copying src/obitools/metabarcoding/options.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/metabarcoding creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/phylogeny copying src/obitools/phylogeny/newick.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/phylogeny copying src/obitools/phylogeny/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/phylogeny creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tools copying src/obitools/tools/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tools copying src/obitools/tools/solexapairend.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tools creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/parallel copying src/obitools/parallel/jobqueue.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/parallel copying src/obitools/parallel/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/parallel creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/unit copying src/obitools/unit/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/unit creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/unit/obitools copying src/obitools/unit/obitools/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/unit/obitools creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/sequenceencoder copying src/obitools/sequenceencoder/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/sequenceencoder creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/eutils copying src/obitools/eutils/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/eutils creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/options copying src/obitools/options/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/options copying src/obitools/options/bioseqedittag.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/options copying src/obitools/options/bioseqfilter.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/options copying src/obitools/options/taxonomyfilter.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/options copying src/obitools/options/bioseqcutter.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/options creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tree copying src/obitools/tree/newick.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tree copying src/obitools/tree/dot.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tree copying src/obitools/tree/svg.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tree copying src/obitools/tree/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tree copying src/obitools/tree/layout.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tree copying src/obitools/tree/unrooted.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tree creating /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/statistics copying src/obitools/statistics/noncentralhypergeo.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/statistics copying src/obitools/statistics/hypergeometric.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/statistics copying src/obitools/statistics/__init__.py -> /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/statistics running build_ext obitools._obitools src/obitools/_obitools.pyx ok obitools.fastq._fastq src/obitools/fastq/_fastq.pyx ok obitools.format._format src/obitools/format/_format.pyx ok obitools.format.genericparser._genericparser src/obitools/format/genericparser/_genericparser.pyx ok obitools.word._binary src/obitools/word/_binary.pyx ok obitools.word._readindex src/obitools/word/_readindex.pyx ok obitools.profile._profile src/obitools/profile/_profile.pyx ok obitools.align._qsrassemble src/obitools/align/_qsrassemble.pyx ok obitools.align._qsassemble src/obitools/align/_qsassemble.pyx ok obitools.align._lcs src/obitools/align/_lcs.pyx ok obitools.align._lcs src/obitools/align/_lcs.ext.1.c ok obitools.align._lcs src/obitools/align/_lcs.ext.2.c ok obitools.align._lcs src/obitools/align/_lcs.ext.3.c ok obitools.align._lcs src/obitools/align/_lcs.ext.4.c ok obitools.align._freeendgapfm src/obitools/align/_freeendgapfm.pyx ok obitools.align._profilenws src/obitools/align/_profilenws.pyx ok obitools.align._nwsdnabyprot src/obitools/align/_nwsdnabyprot.pyx ok obitools.align._assemble src/obitools/align/_assemble.pyx ok obitools.align._rassemble src/obitools/align/_rassemble.pyx ok obitools.align._upperbond src/obitools/align/_upperbond.pyx ok obitools.align._upperbond src/obitools/align/_upperbond.ext.1.c ok obitools.align._gprofilenws src/obitools/align/_gprofilenws.pyx ok obitools.align._freeendgap src/obitools/align/_freeendgap.pyx ok obitools.align._nws src/obitools/align/_nws.pyx ok obitools.align._dynamic src/obitools/align/_dynamic.pyx ok obitools.align._codonnws src/obitools/align/_codonnws.pyx ok obitools.fasta._fasta src/obitools/fasta/_fasta.pyx ok obitools.utils._utils src/obitools/utils/_utils.pyx ok obitools.tools._solexapairend src/obitools/tools/_solexapairend.pyx ok obitools.options._options src/obitools/options/_options.pyx ok obitools.options._bioseqfilter src/obitools/options/_bioseqfilter.pyx ok #####> ['src/obitools/_obitools.pyx'] cythoning src/obitools/_obitools.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/_obitools.c creating build/temp.linux-x86_64-cpython-311/pyrex creating build/temp.linux-x86_64-cpython-311/pyrex/obitools building 'obitools._obitools' extension creating build/temp.linux-x86_64-cpython-311/build creating build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311 creating build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex creating build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/_obitools.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/_obitools.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/_obitools.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/_obitools.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/fastq/_fastq.pyx'] cythoning src/obitools/fastq/_fastq.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/fastq/_fastq.c creating build/temp.linux-x86_64-cpython-311/pyrex/obitools/fastq building 'obitools.fastq._fastq' extension creating build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/fastq x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/fastq/_fastq.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/fastq/_fastq.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/fastq/_fastq.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fastq/_fastq.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/format/_format.pyx'] cythoning src/obitools/format/_format.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/format/_format.c creating build/temp.linux-x86_64-cpython-311/pyrex/obitools/format building 'obitools.format._format' extension creating build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/format x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/format/_format.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/format/_format.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/format/_format.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/_format.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/format/genericparser/_genericparser.pyx'] cythoning src/obitools/format/genericparser/_genericparser.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/format/genericparser/_genericparser.c creating build/temp.linux-x86_64-cpython-311/pyrex/obitools/format/genericparser building 'obitools.format.genericparser._genericparser' extension creating build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/format/genericparser x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/format/genericparser/_genericparser.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/format/genericparser/_genericparser.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/format/genericparser/_genericparser.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/genericparser/_genericparser.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/word/_binary.pyx'] cythoning src/obitools/word/_binary.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_binary.c creating build/temp.linux-x86_64-cpython-311/pyrex/obitools/word building 'obitools.word._binary' extension creating build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/word x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_binary.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_binary.o build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_binary.c: In function '__pyx_f_8obitools_4word_7_binary_bin2str': build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_binary.c:1818:33: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] 1818 | for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) { | ^ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_binary.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/word/_binary.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/word/_readindex.pyx'] cythoning src/obitools/word/_readindex.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_readindex.c building 'obitools.word._readindex' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/word -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_readindex.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_readindex.o -msse2 build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_readindex.c: In function '__pyx_pf_8obitools_4word_10_readindex_9ReadIndex_10indexWords': build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_readindex.c:6289:3: warning: implicit declaration of function 'heapsort' [-Wimplicit-function-declaration] 6289 | heapsort(__pyx_v_self->_wordlist, __pyx_v_i, (sizeof(pobinuc)), __pyx_f_8obitools_4word_10_readindex_cmpwords); | ^~~~~~~~ build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_readindex.c: In function '__pyx_gb_8obitools_4word_10_readindex_9ReadIndex_14generator': build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_readindex.c:6558:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 6558 | for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) { | ^ build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_readindex.c: In function '__pyx_gb_8obitools_4word_10_readindex_9ReadIndex_17generator1': build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_readindex.c:6756:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 6756 | for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) { | ^ build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_readindex.c: In function '__pyx_pf_8obitools_4word_10_readindex_9ReadIndex_8load': build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_readindex.c:5464:10: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 5464 | (void)(fread((&__pyx_v_ltbuffer), (sizeof(size_t)), 1, __pyx_v_f)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_readindex.c:5533:10: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 5533 | (void)(fread(__pyx_v_tcbuffer, 1, __pyx_v_ltbuffer, __pyx_v_f)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function '__pyx_pf_8obitools_4word_10_readindex_9ReadIndex_8load', inlined from '__pyx_pw_8obitools_4word_10_readindex_9ReadIndex_9load' at build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_readindex.c:4505:13: build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_readindex.c:5718:10: warning: pointer '__pyx_v_f' may be used after 'fclose' [-Wuse-after-free] 5718 | (void)(fclose(__pyx_v_f)); | ~^~~~~~~~~~~~~~~~~~ build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_readindex.c:5585:10: note: call to 'fclose' here 5585 | (void)(fclose(__pyx_v_f)); | ~^~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_readindex.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/word/_readindex.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/profile/_profile.pyx'] cythoning src/obitools/profile/_profile.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/profile/_profile.c creating build/temp.linux-x86_64-cpython-311/pyrex/obitools/profile building 'obitools.profile._profile' extension creating build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/profile x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/profile/_profile.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/profile/_profile.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/profile/_profile.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/profile/_profile.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/align/_qsrassemble.pyx'] cythoning src/obitools/align/_qsrassemble.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_qsrassemble.c creating build/temp.linux-x86_64-cpython-311/pyrex/obitools/align building 'obitools.align._qsrassemble' extension creating build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_qsrassemble.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_qsrassemble.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_qsrassemble.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_qsrassemble.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/align/_qsassemble.pyx'] cythoning src/obitools/align/_qsassemble.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_qsassemble.c building 'obitools.align._qsassemble' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_qsassemble.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_qsassemble.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_qsassemble.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_qsassemble.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.4.c'] cythoning src/obitools/align/_lcs.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_lcs.c building 'obitools.align._lcs' extension creating build/temp.linux-x86_64-cpython-311/src creating build/temp.linux-x86_64-cpython-311/src/obitools creating build/temp.linux-x86_64-cpython-311/src/obitools/align x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_lcs.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_lcs.o -msse2 x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.11 -c src/obitools/align/_lcs.ext.1.c -o build/temp.linux-x86_64-cpython-311/src/obitools/align/_lcs.ext.1.o -msse2 src/obitools/align/_lcs.ext.1.c: In function 'simpleLCS': src/obitools/align/_lcs.ext.1.c:159:25: warning: 'pl' may be used uninitialized [-Wmaybe-uninitialized] 159 | if(lpath) *lpath=pl; | ~~~~~~^~~ src/obitools/align/_lcs.ext.1.c:103:17: note: 'pl' was declared here 103 | int32_t pl,pu,pd; | ^~ src/obitools/align/_lcs.ext.1.c:166:16: warning: 'sl' may be used uninitialized [-Wmaybe-uninitialized] 166 | return lcs; | ^~~ src/obitools/align/_lcs.ext.1.c:102:17: note: 'sl' was declared here 102 | int32_t sl,su,sd; | ^~ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.11 -c src/obitools/align/_lcs.ext.2.c -o build/temp.linux-x86_64-cpython-311/src/obitools/align/_lcs.ext.2.o -msse2 In file included from src/obitools/align/_lcs.ext.2.c:34: src/obitools/align/_lcs_fast.h:8:14: warning: 'printreg' defined but not used [-Wunused-function] 8 | static void printreg(VTYPE r) | ^~~~~~~~ In file included from /usr/lib/gcc/x86_64-linux-gnu/12/include/xmmintrin.h:1316, from src/obitools/align/_sse.h:5, from src/obitools/align/_lcs.h:1, from src/obitools/align/_lcs.ext.2.c:1: In function '_mm_extract_epi16', inlined from 'fastLCSScore16' at src/obitools/align/_lcs_fast.h:400:39: /usr/lib/gcc/x86_64-linux-gnu/12/include/emmintrin.h:1390:27: warning: 'scurrent' may be used uninitialized [-Wmaybe-uninitialized] 1390 | return (unsigned short) __builtin_ia32_vec_ext_v8hi ((__v8hi)__A, __N); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/obitools/align/_lcs_fast.h: In function 'fastLCSScore16': src/obitools/align/_lcs_fast.h:132:16: note: 'scurrent' was declared here 132 | VTYPE scurrent; | ^~~~~~~~ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.11 -c src/obitools/align/_lcs.ext.3.c -o build/temp.linux-x86_64-cpython-311/src/obitools/align/_lcs.ext.3.o -msse2 In file included from src/obitools/align/_lcs.ext.3.c:34: src/obitools/align/_lcs_fast.h:8:14: warning: 'printreg' defined but not used [-Wunused-function] 8 | static void printreg(VTYPE r) | ^~~~~~~~ In file included from /usr/lib/gcc/x86_64-linux-gnu/12/include/xmmintrin.h:1316, from src/obitools/align/_sse.h:5, from src/obitools/align/_lcs.h:1, from src/obitools/align/_lcs.ext.3.c:1: In function '_mm_extract_epi16', inlined from '_s2_extract_epi8' at src/obitools/align/_sse.h:77:12, inlined from 'fastLCSScore8' at src/obitools/align/_lcs_fast.h:400:39: /usr/lib/gcc/x86_64-linux-gnu/12/include/emmintrin.h:1390:27: warning: 'scurrent' may be used uninitialized [-Wmaybe-uninitialized] 1390 | return (unsigned short) __builtin_ia32_vec_ext_v8hi ((__v8hi)__A, __N); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/obitools/align/_lcs_fast.h: In function 'fastLCSScore8': src/obitools/align/_lcs_fast.h:132:16: note: 'scurrent' was declared here 132 | VTYPE scurrent; | ^~~~~~~~ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.11 -c src/obitools/align/_lcs.ext.4.c -o build/temp.linux-x86_64-cpython-311/src/obitools/align/_lcs.ext.4.o -msse2 src/obitools/align/_lcs.ext.4.c: In function 'buildTable': src/obitools/align/_lcs.ext.4.c:96:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] 96 | if (zero.c[0]+zero.c[1]+zero.c[2]+zero.c[3]==0) | ^ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_lcs.o build/temp.linux-x86_64-cpython-311/src/obitools/align/_lcs.ext.1.o build/temp.linux-x86_64-cpython-311/src/obitools/align/_lcs.ext.2.o build/temp.linux-x86_64-cpython-311/src/obitools/align/_lcs.ext.3.o build/temp.linux-x86_64-cpython-311/src/obitools/align/_lcs.ext.4.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_lcs.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/align/_freeendgapfm.pyx'] cythoning src/obitools/align/_freeendgapfm.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_freeendgapfm.c building 'obitools.align._freeendgapfm' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_freeendgapfm.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_freeendgapfm.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_freeendgapfm.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_freeendgapfm.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/align/_profilenws.pyx'] cythoning src/obitools/align/_profilenws.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_profilenws.c building 'obitools.align._profilenws' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_profilenws.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_profilenws.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_profilenws.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_profilenws.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/align/_nwsdnabyprot.pyx'] cythoning src/obitools/align/_nwsdnabyprot.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_nwsdnabyprot.c building 'obitools.align._nwsdnabyprot' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_nwsdnabyprot.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_nwsdnabyprot.o build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_nwsdnabyprot.c: In function '__pyx_f_8obitools_5align_13_nwsdnabyprot_12NWSDNAByProt_doAlignment': build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_nwsdnabyprot.c:4966:29: warning: '__pyx_v_smatrix' may be used uninitialized [-Wmaybe-uninitialized] 4966 | __pyx_r = (__pyx_v_smatrix[__pyx_v_idx]).score; | ^ build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_nwsdnabyprot.c:3985:67: note: '__pyx_v_smatrix' was declared here 3985 | struct __pyx_t_8obitools_5align_13_nwsdnabyprot_CodonAlignCell *__pyx_v_smatrix; | ^~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_nwsdnabyprot.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_nwsdnabyprot.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/align/_assemble.pyx'] cythoning src/obitools/align/_assemble.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_assemble.c building 'obitools.align._assemble' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_assemble.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_assemble.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_assemble.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_assemble.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/align/_rassemble.pyx'] cythoning src/obitools/align/_rassemble.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_rassemble.c building 'obitools.align._rassemble' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_rassemble.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_rassemble.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_rassemble.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_rassemble.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] cythoning src/obitools/align/_upperbond.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_upperbond.c building 'obitools.align._upperbond' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_upperbond.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_upperbond.o -msse2 x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/obitools/align -I/usr/include/python3.11 -c src/obitools/align/_upperbond.ext.1.c -o build/temp.linux-x86_64-cpython-311/src/obitools/align/_upperbond.ext.1.o -msse2 src/obitools/align/_upperbond.ext.1.c: In function 'buildTable': src/obitools/align/_upperbond.ext.1.c:96:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] 96 | if (zero.c[0]+zero.c[1]+zero.c[2]+zero.c[3]==0) | ^ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_upperbond.o build/temp.linux-x86_64-cpython-311/src/obitools/align/_upperbond.ext.1.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_upperbond.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/align/_gprofilenws.pyx'] cythoning src/obitools/align/_gprofilenws.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_gprofilenws.c building 'obitools.align._gprofilenws' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_gprofilenws.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_gprofilenws.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_gprofilenws.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_gprofilenws.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/align/_freeendgap.pyx'] cythoning src/obitools/align/_freeendgap.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_freeendgap.c building 'obitools.align._freeendgap' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_freeendgap.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_freeendgap.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_freeendgap.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_freeendgap.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/align/_nws.pyx'] cythoning src/obitools/align/_nws.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_nws.c building 'obitools.align._nws' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_nws.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_nws.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_nws.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_nws.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/align/_dynamic.pyx'] cythoning src/obitools/align/_dynamic.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_dynamic.c building 'obitools.align._dynamic' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_dynamic.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_dynamic.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_dynamic.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_dynamic.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/align/_codonnws.pyx'] cythoning src/obitools/align/_codonnws.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_codonnws.c building 'obitools.align._codonnws' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_codonnws.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_codonnws.o build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_codonnws.c: In function '__pyx_f_8obitools_5align_9_codonnws_8CodonNWS_backtrack': build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_codonnws.c:26568:104: warning: '__pyx_v_p' may be used uninitialized [-Wmaybe-uninitialized] 26568 | (__pyx_v_self->__pyx_base.__pyx_base.path->path[__pyx_v_self->__pyx_base.__pyx_base.path->length]) = __pyx_v_p; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_codonnws.c:26178:7: note: '__pyx_v_p' was declared here 26178 | int __pyx_v_p; | ^~~~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_codonnws.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_codonnws.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/fasta/_fasta.pyx'] cythoning src/obitools/fasta/_fasta.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/fasta/_fasta.c creating build/temp.linux-x86_64-cpython-311/pyrex/obitools/fasta building 'obitools.fasta._fasta' extension creating build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/fasta x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/fasta/_fasta.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/fasta/_fasta.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/fasta/_fasta.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fasta/_fasta.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/utils/_utils.pyx'] cythoning src/obitools/utils/_utils.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/utils/_utils.c creating build/temp.linux-x86_64-cpython-311/pyrex/obitools/utils building 'obitools.utils._utils' extension creating build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/utils x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/utils/_utils.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/utils/_utils.o build/temp.linux-x86_64-cpython-311/pyrex/obitools/utils/_utils.c: In function '__pyx_f_8obitools_5utils_6_utils_progressBar': build/temp.linux-x86_64-cpython-311/pyrex/obitools/utils/_utils.c:3852:57: warning: field precision specifier '.*' expects argument of type 'int', but argument 5 has type 'long long unsigned int' [-Wformat=] 3852 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %d days %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.0), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_days, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); | ~~^~ ~~~~~~~~~~~~~~~~ | | | | int long long unsigned int build/temp.linux-x86_64-cpython-311/pyrex/obitools/utils/_utils.c:3852:63: warning: field precision specifier '.*' expects argument of type 'int', but argument 8 has type 'long long unsigned int' [-Wformat=] 3852 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %d days %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.0), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_days, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); | ~~^~ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long long unsigned int build/temp.linux-x86_64-cpython-311/pyrex/obitools/utils/_utils.c:3893:57: warning: field precision specifier '.*' expects argument of type 'int', but argument 5 has type 'long long unsigned int' [-Wformat=] 3893 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); | ~~^~ ~~~~~~~~~~~~~~~~ | | | | int long long unsigned int build/temp.linux-x86_64-cpython-311/pyrex/obitools/utils/_utils.c:3893:63: warning: field precision specifier '.*' expects argument of type 'int', but argument 8 has type 'long long unsigned int' [-Wformat=] 3893 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %02d:%02d:%02d"), ((char *)__pyx_t_13), (__pyx_v_percent * 100.), __pyx_v_fraction, __pyx_v_diese, (__pyx_v_wheel[__pyx_v_arrow]), (50 - __pyx_v_fraction), __pyx_v_spaces, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); | ~~^~ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long long unsigned int x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/utils/_utils.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/utils/_utils.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/tools/_solexapairend.pyx'] cythoning src/obitools/tools/_solexapairend.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/tools/_solexapairend.c creating build/temp.linux-x86_64-cpython-311/pyrex/obitools/tools building 'obitools.tools._solexapairend' extension creating build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/tools x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/tools/_solexapairend.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/tools/_solexapairend.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/tools/_solexapairend.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tools/_solexapairend.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/options/_options.pyx'] cythoning src/obitools/options/_options.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/options/_options.c creating build/temp.linux-x86_64-cpython-311/pyrex/obitools/options building 'obitools.options._options' extension creating build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/options x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/options/_options.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/options/_options.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/options/_options.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/options/_options.cpython-311-x86_64-linux-gnu.so #####> ['src/obitools/options/_bioseqfilter.pyx'] cythoning src/obitools/options/_bioseqfilter.pyx to build/temp.linux-x86_64-cpython-311/pyrex/obitools/options/_bioseqfilter.c building 'obitools.options._bioseqfilter' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c build/temp.linux-x86_64-cpython-311/pyrex/obitools/options/_bioseqfilter.c -o build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/options/_bioseqfilter.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/build/temp.linux-x86_64-cpython-311/pyrex/obitools/options/_bioseqfilter.o -L/usr/lib/x86_64-linux-gnu -o /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/options/_bioseqfilter.cpython-311-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.11 creating build/raw_scripts Store the raw script src/oligotag.py -> build/raw_scripts/oligotag.py copying src/oligotag.py -> build/raw_scripts copying and adjusting src/oligotag.py -> build/scripts-3.11 Store the raw script src/obiuniq.py -> build/raw_scripts/obiuniq.py copying src/obiuniq.py -> build/raw_scripts copying and adjusting src/obiuniq.py -> build/scripts-3.11 Store the raw script src/obitaxonomy.py -> build/raw_scripts/obitaxonomy.py copying src/obitaxonomy.py -> build/raw_scripts copying and adjusting src/obitaxonomy.py -> build/scripts-3.11 Store the raw script src/obitab.py -> build/raw_scripts/obitab.py copying src/obitab.py -> build/raw_scripts copying and adjusting src/obitab.py -> build/scripts-3.11 Store the raw script src/obisubset.py -> build/raw_scripts/obisubset.py copying src/obisubset.py -> build/raw_scripts copying and adjusting src/obisubset.py -> build/scripts-3.11 Store the raw script src/obistat.py -> build/raw_scripts/obistat.py copying src/obistat.py -> build/raw_scripts copying and adjusting src/obistat.py -> build/scripts-3.11 Store the raw script src/obisplit.py -> build/raw_scripts/obisplit.py copying src/obisplit.py -> build/raw_scripts copying and adjusting src/obisplit.py -> build/scripts-3.11 Store the raw script src/obisilva.py -> build/raw_scripts/obisilva.py copying src/obisilva.py -> build/raw_scripts copying and adjusting src/obisilva.py -> build/scripts-3.11 Store the raw script src/obiselect.py -> build/raw_scripts/obiselect.py copying src/obiselect.py -> build/raw_scripts copying and adjusting src/obiselect.py -> build/scripts-3.11 Store the raw script src/obisample.py -> build/raw_scripts/obisample.py copying src/obisample.py -> build/raw_scripts copying and adjusting src/obisample.py -> build/scripts-3.11 Store the raw script src/obipr2.py -> build/raw_scripts/obipr2.py copying src/obipr2.py -> build/raw_scripts copying and adjusting src/obipr2.py -> build/scripts-3.11 Store the raw script src/obijoinpairedend.py -> build/raw_scripts/obijoinpairedend.py copying src/obijoinpairedend.py -> build/raw_scripts copying and adjusting src/obijoinpairedend.py -> build/scripts-3.11 Store the raw script src/obihead.py -> build/raw_scripts/obihead.py copying src/obihead.py -> build/raw_scripts copying and adjusting src/obihead.py -> build/scripts-3.11 Store the raw script src/obiextract.py -> build/raw_scripts/obiextract.py copying src/obiextract.py -> build/raw_scripts copying and adjusting src/obiextract.py -> build/scripts-3.11 Store the raw script src/obidistribute.py -> build/raw_scripts/obidistribute.py copying src/obidistribute.py -> build/raw_scripts copying and adjusting src/obidistribute.py -> build/scripts-3.11 Store the raw script src/obicut.py -> build/raw_scripts/obicut.py copying src/obicut.py -> build/raw_scripts copying and adjusting src/obicut.py -> build/scripts-3.11 Store the raw script src/obicount.py -> build/raw_scripts/obicount.py copying src/obicount.py -> build/raw_scripts copying and adjusting src/obicount.py -> build/scripts-3.11 Store the raw script src/obiconvert.py -> build/raw_scripts/obiconvert.py copying src/obiconvert.py -> build/raw_scripts copying and adjusting src/obiconvert.py -> build/scripts-3.11 Store the raw script src/obiclean.py -> build/raw_scripts/obiclean.py copying src/obiclean.py -> build/raw_scripts copying and adjusting src/obiclean.py -> build/scripts-3.11 Store the raw script src/obiaddtaxids.py -> build/raw_scripts/obiaddtaxids.py copying src/obiaddtaxids.py -> build/raw_scripts copying and adjusting src/obiaddtaxids.py -> build/scripts-3.11 Store the raw script src/ngsfilter.py -> build/raw_scripts/ngsfilter.py copying src/ngsfilter.py -> build/raw_scripts copying and adjusting src/ngsfilter.py -> build/scripts-3.11 Store the raw script src/illuminapairedend.py -> build/raw_scripts/illuminapairedend.py copying src/illuminapairedend.py -> build/raw_scripts copying and adjusting src/illuminapairedend.py -> build/scripts-3.11 Store the raw script src/extractreads2.py -> build/raw_scripts/extractreads2.py copying src/extractreads2.py -> build/raw_scripts copying and adjusting src/extractreads2.py -> build/scripts-3.11 Store the raw script src/extractreads.py -> build/raw_scripts/extractreads.py copying src/extractreads.py -> build/raw_scripts copying and adjusting src/extractreads.py -> build/scripts-3.11 Store the raw script src/ecotaxstat.py -> build/raw_scripts/ecotaxstat.py copying src/ecotaxstat.py -> build/raw_scripts copying and adjusting src/ecotaxstat.py -> build/scripts-3.11 Store the raw script src/ecotaxspecificity.py -> build/raw_scripts/ecotaxspecificity.py copying src/ecotaxspecificity.py -> build/raw_scripts copying and adjusting src/ecotaxspecificity.py -> build/scripts-3.11 Store the raw script src/ecotag.py -> build/raw_scripts/ecotag.py copying src/ecotag.py -> build/raw_scripts copying and adjusting src/ecotag.py -> build/scripts-3.11 Store the raw script src/ecodbtaxstat.py -> build/raw_scripts/ecodbtaxstat.py copying src/ecodbtaxstat.py -> build/raw_scripts copying and adjusting src/ecodbtaxstat.py -> build/scripts-3.11 Store the raw script src/ali2consensus.py -> build/raw_scripts/ali2consensus.py copying src/ali2consensus.py -> build/raw_scripts copying and adjusting src/ali2consensus.py -> build/scripts-3.11 Store the raw script src/obitail.py -> build/raw_scripts/obitail.py copying src/obitail.py -> build/raw_scripts copying and adjusting src/obitail.py -> build/scripts-3.11 Store the raw script src/obisort.py -> build/raw_scripts/obisort.py copying src/obisort.py -> build/raw_scripts copying and adjusting src/obisort.py -> build/scripts-3.11 Store the raw script src/obigrep.py -> build/raw_scripts/obigrep.py copying src/obigrep.py -> build/raw_scripts copying and adjusting src/obigrep.py -> build/scripts-3.11 Store the raw script src/obicomplement.py -> build/raw_scripts/obicomplement.py copying src/obicomplement.py -> build/raw_scripts copying and adjusting src/obicomplement.py -> build/scripts-3.11 Store the raw script src/obiannotate.py -> build/raw_scripts/obiannotate.py copying src/obiannotate.py -> build/raw_scripts copying and adjusting src/obiannotate.py -> build/scripts-3.11 changing mode of build/scripts-3.11/oligotag from 644 to 755 changing mode of build/scripts-3.11/obiuniq from 644 to 755 changing mode of build/scripts-3.11/obitaxonomy from 644 to 755 changing mode of build/scripts-3.11/obitab from 644 to 755 changing mode of build/scripts-3.11/obisubset from 644 to 755 changing mode of build/scripts-3.11/obistat from 644 to 755 changing mode of build/scripts-3.11/obisplit from 644 to 755 changing mode of build/scripts-3.11/obisilva from 644 to 755 changing mode of build/scripts-3.11/obiselect from 644 to 755 changing mode of build/scripts-3.11/obisample from 644 to 755 changing mode of build/scripts-3.11/obipr2 from 644 to 755 changing mode of build/scripts-3.11/obijoinpairedend from 644 to 755 changing mode of build/scripts-3.11/obihead from 644 to 755 changing mode of build/scripts-3.11/obiextract from 644 to 755 changing mode of build/scripts-3.11/obidistribute from 644 to 755 changing mode of build/scripts-3.11/obicut from 644 to 755 changing mode of build/scripts-3.11/obicount from 644 to 755 changing mode of build/scripts-3.11/obiconvert from 644 to 755 changing mode of build/scripts-3.11/obiclean from 644 to 755 changing mode of build/scripts-3.11/obiaddtaxids from 644 to 755 changing mode of build/scripts-3.11/ngsfilter from 644 to 755 changing mode of build/scripts-3.11/illuminapairedend from 644 to 755 changing mode of build/scripts-3.11/extractreads2 from 644 to 755 changing mode of build/scripts-3.11/extractreads from 644 to 755 changing mode of build/scripts-3.11/ecotaxstat from 644 to 755 changing mode of build/scripts-3.11/ecotaxspecificity from 644 to 755 changing mode of build/scripts-3.11/ecotag from 644 to 755 changing mode of build/scripts-3.11/ecodbtaxstat from 644 to 755 changing mode of build/scripts-3.11/ali2consensus from 644 to 755 changing mode of build/scripts-3.11/obitail from 644 to 755 changing mode of build/scripts-3.11/obisort from 644 to 755 changing mode of build/scripts-3.11/obigrep from 644 to 755 changing mode of build/scripts-3.11/obicomplement from 644 to 755 changing mode of build/scripts-3.11/obiannotate from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:240: cd /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build; python3.11 -m unittest discover -v testCreateSequenceQualifier (obitools.unit.obitools.AABioseqTest.testCreateSequenceQualifier) ... ok testDefinitionAttribute (obitools.unit.obitools.AABioseqTest.testDefinitionAttribute) test if definition attribute exists ... ok testIdAttribute (obitools.unit.obitools.AABioseqTest.testIdAttribute) test if id attribute exists ... ok testIdValue (obitools.unit.obitools.AABioseqTest.testIdValue) test if id attribute value is 'id1' ... ok testSequenceIsLowerCase (obitools.unit.obitools.AABioseqTest.testSequenceIsLowerCase) test if sequence is stored as lower case letter ... ok testSequenceQualifier (obitools.unit.obitools.AABioseqTest.testSequenceQualifier) test if the extra qualifier is present and its value is three. ... ok testCreateSequenceQualifier (obitools.unit.obitools.BioseqTest.testCreateSequenceQualifier) ... ok testDefinitionAttribute (obitools.unit.obitools.BioseqTest.testDefinitionAttribute) test if definition attribute exists ... ok testIdAttribute (obitools.unit.obitools.BioseqTest.testIdAttribute) test if id attribute exists ... ok testIdValue (obitools.unit.obitools.BioseqTest.testIdValue) test if id attribute value is 'id1' ... ok testSequenceIsLowerCase (obitools.unit.obitools.BioseqTest.testSequenceIsLowerCase) test if sequence is stored as lower case letter ... ok testSequenceQualifier (obitools.unit.obitools.BioseqTest.testSequenceQualifier) test if the extra qualifier is present and its value is three. ... ok testCreateSequenceQualifier (obitools.unit.obitools.NucBioseqTest.testCreateSequenceQualifier) ... ok testDefinitionAttribute (obitools.unit.obitools.NucBioseqTest.testDefinitionAttribute) test if definition attribute exists ... ok testIdAttribute (obitools.unit.obitools.NucBioseqTest.testIdAttribute) test if id attribute exists ... ok testIdValue (obitools.unit.obitools.NucBioseqTest.testIdValue) test if id attribute value is 'id1' ... ok testSequenceIsLowerCase (obitools.unit.obitools.NucBioseqTest.testSequenceIsLowerCase) test if sequence is stored as lower case letter ... ok testSequenceQualifier (obitools.unit.obitools.NucBioseqTest.testSequenceQualifier) test if the extra qualifier is present and its value is three. ... ok ---------------------------------------------------------------------- Ran 18 tests in 0.003s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/obitools-1.2.13+dfsg' PYTHONPATH=/build/obitools-1.2.13+dfsg/.pybuild/cpython2_3.11_obitools/build \ http_proxy='127.0.0.1:9' \ dh_auto_install I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/obitools-1.2.13+dfsg/debian/obitools ['src/obitools/_obitools.pyx'] ['src/obitools/fastq/_fastq.pyx'] ['src/obitools/format/_format.pyx'] ['src/obitools/format/genericparser/_genericparser.pyx'] ['src/obitools/word/_binary.pyx'] @@@@> ['src/obitools/word/_readindex.h'] ['src/obitools/word/_readindex.pyx'] ['src/obitools/profile/_profile.pyx'] ['src/obitools/align/_qsrassemble.pyx'] ['src/obitools/align/_qsassemble.pyx'] @@@@> ['src/obitools/align/_lcs.h'] ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.4.c'] ['src/obitools/align/_freeendgapfm.pyx'] ['src/obitools/align/_profilenws.pyx'] ['src/obitools/align/_nwsdnabyprot.pyx'] ['src/obitools/align/_assemble.pyx'] ['src/obitools/align/_rassemble.pyx'] @@@@> ['src/obitools/align/_sse.h'] ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] ['src/obitools/align/_gprofilenws.pyx'] ['src/obitools/align/_freeendgap.pyx'] ['src/obitools/align/_nws.pyx'] ['src/obitools/align/_dynamic.pyx'] ['src/obitools/align/_codonnws.pyx'] ['src/obitools/fasta/_fasta.pyx'] ['src/obitools/utils/_utils.pyx'] ['src/obitools/tools/_solexapairend.pyx'] ['src/obitools/options/_options.pyx'] ['src/obitools/options/_bioseqfilter.pyx'] running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( Running obidistutils install process running build Running obidistutils build process running littlebigman building 'littlebigman' program x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/obitools-1.2.13+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c distutils.ext/src/littlebigman.c -o build/temp.linux-x86_64-cpython-311/distutils.ext/src/littlebigman.o -msse2 distutils.ext/src/littlebigman.c: In function 'main': distutils.ext/src/littlebigman.c:20:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 20 | else | ^~~~ distutils.ext/src/littlebigman.c:23:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 23 | return 0; | ^~~~~~ x86_64-linux-gnu-gcc build/temp.linux-x86_64-cpython-311/distutils.ext/src/littlebigman.o -o build/temp.linux-x86_64-cpython-311/littlebigman Your CPU is in mode : b'-DLITTLE_END' running build_py running build_ext obitools._obitools src/obitools/_obitools.pyx ok obitools.fastq._fastq src/obitools/fastq/_fastq.pyx ok obitools.format._format src/obitools/format/_format.pyx ok obitools.format.genericparser._genericparser src/obitools/format/genericparser/_genericparser.pyx ok obitools.word._binary src/obitools/word/_binary.pyx ok obitools.word._readindex src/obitools/word/_readindex.pyx ok obitools.profile._profile src/obitools/profile/_profile.pyx ok obitools.align._qsrassemble src/obitools/align/_qsrassemble.pyx ok obitools.align._qsassemble src/obitools/align/_qsassemble.pyx ok obitools.align._lcs src/obitools/align/_lcs.pyx ok obitools.align._lcs src/obitools/align/_lcs.ext.1.c ok obitools.align._lcs src/obitools/align/_lcs.ext.2.c ok obitools.align._lcs src/obitools/align/_lcs.ext.3.c ok obitools.align._lcs src/obitools/align/_lcs.ext.4.c ok obitools.align._freeendgapfm src/obitools/align/_freeendgapfm.pyx ok obitools.align._profilenws src/obitools/align/_profilenws.pyx ok obitools.align._nwsdnabyprot src/obitools/align/_nwsdnabyprot.pyx ok obitools.align._assemble src/obitools/align/_assemble.pyx ok obitools.align._rassemble src/obitools/align/_rassemble.pyx ok obitools.align._upperbond src/obitools/align/_upperbond.pyx ok obitools.align._upperbond src/obitools/align/_upperbond.ext.1.c ok obitools.align._gprofilenws src/obitools/align/_gprofilenws.pyx ok obitools.align._freeendgap src/obitools/align/_freeendgap.pyx ok obitools.align._nws src/obitools/align/_nws.pyx ok obitools.align._dynamic src/obitools/align/_dynamic.pyx ok obitools.align._codonnws src/obitools/align/_codonnws.pyx ok obitools.fasta._fasta src/obitools/fasta/_fasta.pyx ok obitools.utils._utils src/obitools/utils/_utils.pyx ok obitools.tools._solexapairend src/obitools/tools/_solexapairend.pyx ok obitools.options._options src/obitools/options/_options.pyx ok obitools.options._bioseqfilter src/obitools/options/_bioseqfilter.pyx ok #####> ['src/obitools/_obitools.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/_obitools.c' Cython extension (up-to-date) #####> ['src/obitools/fastq/_fastq.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/fastq/_fastq.c' Cython extension (up-to-date) #####> ['src/obitools/format/_format.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/format/_format.c' Cython extension (up-to-date) #####> ['src/obitools/format/genericparser/_genericparser.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/format/genericparser/_genericparser.c' Cython extension (up-to-date) #####> ['src/obitools/word/_binary.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_binary.c' Cython extension (up-to-date) #####> ['src/obitools/word/_readindex.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/word/_readindex.c' Cython extension (up-to-date) #####> ['src/obitools/profile/_profile.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/profile/_profile.c' Cython extension (up-to-date) #####> ['src/obitools/align/_qsrassemble.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_qsrassemble.c' Cython extension (up-to-date) #####> ['src/obitools/align/_qsassemble.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_qsassemble.c' Cython extension (up-to-date) #####> ['src/obitools/align/_lcs.pyx', 'src/obitools/align/_lcs.ext.1.c', 'src/obitools/align/_lcs.ext.2.c', 'src/obitools/align/_lcs.ext.3.c', 'src/obitools/align/_lcs.ext.4.c'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_lcs.c' Cython extension (up-to-date) #####> ['src/obitools/align/_freeendgapfm.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_freeendgapfm.c' Cython extension (up-to-date) #####> ['src/obitools/align/_profilenws.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_profilenws.c' Cython extension (up-to-date) #####> ['src/obitools/align/_nwsdnabyprot.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_nwsdnabyprot.c' Cython extension (up-to-date) #####> ['src/obitools/align/_assemble.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_assemble.c' Cython extension (up-to-date) #####> ['src/obitools/align/_rassemble.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_rassemble.c' Cython extension (up-to-date) #####> ['src/obitools/align/_upperbond.pyx', 'src/obitools/align/_upperbond.ext.1.c'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_upperbond.c' Cython extension (up-to-date) #####> ['src/obitools/align/_gprofilenws.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_gprofilenws.c' Cython extension (up-to-date) #####> ['src/obitools/align/_freeendgap.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_freeendgap.c' Cython extension (up-to-date) #####> ['src/obitools/align/_nws.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_nws.c' Cython extension (up-to-date) #####> ['src/obitools/align/_dynamic.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_dynamic.c' Cython extension (up-to-date) #####> ['src/obitools/align/_codonnws.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/align/_codonnws.c' Cython extension (up-to-date) #####> ['src/obitools/fasta/_fasta.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/fasta/_fasta.c' Cython extension (up-to-date) #####> ['src/obitools/utils/_utils.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/utils/_utils.c' Cython extension (up-to-date) #####> ['src/obitools/tools/_solexapairend.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/tools/_solexapairend.c' Cython extension (up-to-date) #####> ['src/obitools/options/_options.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/options/_options.c' Cython extension (up-to-date) #####> ['src/obitools/options/_bioseqfilter.pyx'] skipping 'build/temp.linux-x86_64-cpython-311/pyrex/obitools/options/_bioseqfilter.c' Cython extension (up-to-date) running build_scripts running install_lib creating /build/obitools-1.2.13+dfsg/debian/obitools/usr creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11 creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/__pycache__/SVGdraw.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/__pycache__/zipfile.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/__pycache__/gzip.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/_obitools.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/statistics creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/statistics/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/statistics/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/statistics/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/statistics/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/statistics copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/statistics/hypergeometric.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/statistics copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/statistics/noncentralhypergeo.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/statistics creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tree creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tree/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tree/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tree/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tree/unrooted.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tree copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tree/layout.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tree copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tree/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tree copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tree/svg.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tree copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tree/dot.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tree copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tree/newick.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tree creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/options creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/options/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/options/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/options/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/options/_bioseqfilter.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/options copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/options/_options.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/options copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/options/bioseqcutter.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/options copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/options/taxonomyfilter.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/options copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/options/bioseqfilter.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/options copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/options/bioseqedittag.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/options copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/options/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/options creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/eutils creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/eutils/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/eutils/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/eutils/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/eutils/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/eutils creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/sequenceencoder creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/sequenceencoder/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/sequenceencoder/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/sequenceencoder/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/sequenceencoder/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/sequenceencoder creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/unit creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/unit/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/unit/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/unit/__pycache__ creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/unit/obitools creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/unit/obitools/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/unit/obitools/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/unit/obitools/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/unit/obitools/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/unit/obitools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/unit/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/unit creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/parallel creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/parallel/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/parallel/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/parallel/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/parallel/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/parallel copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/parallel/jobqueue.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/parallel creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tools creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tools/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tools/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tools/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tools/_solexapairend.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tools/solexapairend.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tools/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tools creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/phylogeny creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/phylogeny/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/phylogeny/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/phylogeny/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/phylogeny/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/phylogeny copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/phylogeny/newick.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/phylogeny creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/metabarcoding creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/metabarcoding/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/metabarcoding/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/metabarcoding/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/metabarcoding/options.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/metabarcoding copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/metabarcoding/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/metabarcoding creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obischemas creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obischemas/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obischemas/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obischemas/__pycache__ creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obischemas/kb creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obischemas/kb/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obischemas/kb/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obischemas/kb/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obischemas/kb/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obischemas/kb copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obischemas/kb/extern.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obischemas/kb copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obischemas/options.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obischemas copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obischemas/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obischemas creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/solexa creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/solexa/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/solexa/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/solexa/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/solexa/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/solexa creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/location creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/location/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/location/__pycache__/feature.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/location/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/location/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/location/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/location/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/location copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/location/feature.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/location creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fnaqual creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fnaqual/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fnaqual/__pycache__/quality.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fnaqual/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fnaqual/__pycache__/fasta.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fnaqual/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fnaqual/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fnaqual/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fnaqual/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fnaqual copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fnaqual/fasta.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fnaqual copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fnaqual/quality.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fnaqual creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/barcodecoverage creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/barcodecoverage/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/barcodecoverage/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/barcodecoverage/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/barcodecoverage/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/barcodecoverage copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/barcodecoverage/findErrors.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/barcodecoverage copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/barcodecoverage/readFiles.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/barcodecoverage copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/barcodecoverage/calcBc.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/barcodecoverage copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/barcodecoverage/drawBcTree.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/barcodecoverage copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/barcodecoverage/writeBcTree.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/barcodecoverage creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/__pycache__/tree.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/__pycache__/dag.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/__pycache__/rootedtree.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/__pycache__ creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/layout creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/layout/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/layout/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/layout/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/layout/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/layout copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/layout/radialtree.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/layout creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/algorithms creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/algorithms/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/algorithms/__pycache__/component.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/algorithms/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/algorithms/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/algorithms/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/algorithms/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/algorithms copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/algorithms/component.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/algorithms copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/algorithms/clique.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/algorithms copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/algorithms/compact.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/algorithms copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/tree.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/dag.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/rootedtree.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecotag creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecotag/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecotag/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecotag/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecotag/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecotag copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecotag/parser.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecotag creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/goa creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/goa/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/goa/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/goa/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/goa/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/goa copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/goa/parser.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/goa creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/utils creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/utils/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/utils/__pycache__/bioseq.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/utils/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/utils/__pycache__/iterator.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/utils/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/utils/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/utils/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/utils/_utils.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/utils copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/utils/iterator.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/utils copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/utils/bioseq.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/utils copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/utils/crc64.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/utils copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/utils/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/utils creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fasta creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fasta/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fasta/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fasta/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fasta/_fasta.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fasta copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fasta/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fasta creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/thermo creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/thermo/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/thermo/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/thermo/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/thermo/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/thermo creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/dnahash creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/dnahash/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/dnahash/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/dnahash/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/dnahash/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/dnahash creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/carto creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/carto/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/carto/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/carto/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/carto/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/carto creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obo creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obo/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obo/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obo/__pycache__ creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obo/go creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obo/go/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obo/go/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obo/go/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obo/go/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obo/go copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obo/go/parser.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obo/go copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obo/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obo copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obo/parser.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obo creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/align creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/align/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/align/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_codonnws.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_dynamic.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_nws.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_freeendgap.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_gprofilenws.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_upperbond.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_rassemble.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_assemble.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_nwsdnabyprot.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_profilenws.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_freeendgapfm.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_lcs.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_qsassemble.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/_qsrassemble.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/homopolymere.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/ssearch.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/align copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/align creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecopcr creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecopcr/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecopcr/__pycache__/annotation.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecopcr/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecopcr/__pycache__/sequence.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecopcr/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecopcr/__pycache__/taxonomy.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecopcr/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecopcr/__pycache__/options.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecopcr/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecopcr/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecopcr/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecopcr/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecopcr copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecopcr/annotation.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecopcr copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecopcr/options.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecopcr copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecopcr/sequence.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecopcr copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecopcr/taxonomy.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecopcr creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/profile creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/profile/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/profile/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/profile/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/profile/_profile.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/profile copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/profile/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/profile creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/table creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/table/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/table/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/table/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/table/csv.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/table copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/table/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/table creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/__pycache__ creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/blastdb creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/blastdb/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/blastdb/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/blastdb/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/blastdb/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/blastdb creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/embl creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/embl/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/embl/__pycache__/parser.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/embl/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/embl/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/embl/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/embl/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/embl copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/embl/parser.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/embl creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/genbank creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/genbank/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/genbank/__pycache__/parser.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/genbank/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/genbank/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/genbank/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/genbank/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/genbank copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/genbank/ncbi.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/genbank copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/genbank/parser.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/genbank copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/dnaparser.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tagmatcher creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tagmatcher/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tagmatcher/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tagmatcher/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tagmatcher/options.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tagmatcher copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tagmatcher/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tagmatcher copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tagmatcher/parser.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tagmatcher creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/interactive creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/interactive/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/interactive/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/interactive/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/interactive/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/interactive creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/alignment creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/alignment/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/alignment/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/alignment/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/alignment/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/alignment copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/alignment/ace.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/alignment creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/word creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/word/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/word/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/word/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/word/_readindex.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/word copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/word/_binary.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/word copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/word/options.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/word copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/word/predicate.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/word copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/word/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/word creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/__pycache__/options.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/_format.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/ontology creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/ontology/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/ontology/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/ontology/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/ontology/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/ontology copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/ontology/go_obo.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/ontology creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/sequence creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/sequence/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/__pycache__/fastq.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/sequence/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/__pycache__/fasta.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/sequence/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/__pycache__/fnaqual.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/sequence/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/__pycache__/genbank.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/sequence/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/__pycache__/embl.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/sequence/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/sequence/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/embl.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/sequence copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/fastq.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/sequence copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/tagmatcher.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/sequence copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/genbank.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/sequence copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/fasta.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/sequence copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/fnaqual.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/sequence copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/sequence creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/genericparser creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/genericparser/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/genericparser/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/genericparser/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/genericparser/_genericparser.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/genericparser copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/genericparser/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/genericparser copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/options.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/blast creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/blast/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/blast/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/blast/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/blast/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/blast creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/distances creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/distances/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/distances/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/distances/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/distances/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/distances copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/distances/observed.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/distances copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/distances/phylip.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/distances copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/distances/r.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/distances creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fastq creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fastq/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fastq/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fastq/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fastq/_fastq.cpython-311-x86_64-linux-gnu.so -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fastq copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fastq/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fastq creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecobarcode creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecobarcode/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecobarcode/__pycache__/__init__.cpython-311.pyc -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecobarcode/__pycache__ copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecobarcode/options.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecobarcode copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecobarcode/databases.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecobarcode copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecobarcode/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecobarcode copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecobarcode/ecotag.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecobarcode copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecobarcode/rawdata.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecobarcode copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecobarcode/taxonomy.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecobarcode copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/version.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/decorator.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/collections.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fast.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/gzip.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/sample.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/solexaPairEnd.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/svg.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/zipfile.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/__init__.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools copying /build/obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/SVGdraw.py -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/statistics/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/statistics/hypergeometric.py to hypergeometric.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/statistics/noncentralhypergeo.py to noncentralhypergeo.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tree/unrooted.py to unrooted.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tree/layout.py to layout.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tree/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tree/svg.py to svg.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tree/dot.py to dot.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tree/newick.py to newick.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/options/bioseqcutter.py to bioseqcutter.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/options/taxonomyfilter.py to taxonomyfilter.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/options/bioseqfilter.py to bioseqfilter.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/options/bioseqedittag.py to bioseqedittag.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/options/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/eutils/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/sequenceencoder/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/unit/obitools/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/unit/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/parallel/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/parallel/jobqueue.py to jobqueue.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tools/solexapairend.py to solexapairend.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tools/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/phylogeny/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/phylogeny/newick.py to newick.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/metabarcoding/options.py to options.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/metabarcoding/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obischemas/kb/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obischemas/kb/extern.py to extern.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obischemas/options.py to options.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obischemas/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/solexa/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/location/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/location/feature.py to feature.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fnaqual/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fnaqual/fasta.py to fasta.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fnaqual/quality.py to quality.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/barcodecoverage/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/barcodecoverage/findErrors.py to findErrors.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/barcodecoverage/readFiles.py to readFiles.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/barcodecoverage/calcBc.py to calcBc.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/barcodecoverage/drawBcTree.py to drawBcTree.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/barcodecoverage/writeBcTree.py to writeBcTree.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/layout/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/layout/radialtree.py to radialtree.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/algorithms/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/algorithms/component.py to component.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/algorithms/clique.py to clique.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/algorithms/compact.py to compact.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/tree.py to tree.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/dag.py to dag.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/graph/rootedtree.py to rootedtree.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecotag/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecotag/parser.py to parser.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/goa/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/goa/parser.py to parser.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/utils/iterator.py to iterator.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/utils/bioseq.py to bioseq.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/utils/crc64.py to crc64.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/utils/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fasta/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/thermo/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/dnahash/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/carto/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obo/go/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obo/go/parser.py to parser.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obo/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/obo/parser.py to parser.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/align/homopolymere.py to homopolymere.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/align/ssearch.py to ssearch.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/align/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecopcr/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecopcr/annotation.py to annotation.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecopcr/options.py to options.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecopcr/sequence.py to sequence.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecopcr/taxonomy.py to taxonomy.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/profile/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/table/csv.py to csv.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/table/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/blastdb/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/embl/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/embl/parser.py to parser.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/genbank/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/genbank/ncbi.py to ncbi.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/genbank/parser.py to parser.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/dnaparser.py to dnaparser.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/seqdb/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tagmatcher/options.py to options.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tagmatcher/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/tagmatcher/parser.py to parser.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/interactive/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/alignment/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/alignment/ace.py to ace.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/word/options.py to options.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/word/predicate.py to predicate.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/word/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/ontology/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/ontology/go_obo.py to go_obo.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/sequence/embl.py to embl.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/sequence/fastq.py to fastq.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/sequence/tagmatcher.py to tagmatcher.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/sequence/genbank.py to genbank.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/sequence/fasta.py to fasta.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/sequence/fnaqual.py to fnaqual.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/sequence/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/genericparser/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/format/options.py to options.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/blast/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/distances/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/distances/observed.py to observed.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/distances/phylip.py to phylip.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/distances/r.py to r.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fastq/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecobarcode/options.py to options.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecobarcode/databases.py to databases.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecobarcode/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecobarcode/ecotag.py to ecotag.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecobarcode/rawdata.py to rawdata.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/ecobarcode/taxonomy.py to taxonomy.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/version.py to version.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/decorator.py to decorator.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/collections.py to collections.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/fast.py to fast.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/gzip.py to gzip.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/sample.py to sample.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/solexaPairEnd.py to solexaPairEnd.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/svg.py to svg.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/zipfile.py to zipfile.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/__init__.py to __init__.cpython-311.pyc byte-compiling /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/obitools/SVGdraw.py to SVGdraw.cpython-311.pyc running install_egg_info running egg_info creating src/OBITools.egg-info writing src/OBITools.egg-info/PKG-INFO writing dependency_links to src/OBITools.egg-info/dependency_links.txt writing requirements to src/OBITools.egg-info/requires.txt writing top-level names to src/OBITools.egg-info/top_level.txt writing manifest file 'src/OBITools.egg-info/SOURCES.txt' reading manifest file 'src/OBITools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.pem' under directory 'distutils.ext' writing manifest file 'src/OBITools.egg-info/SOURCES.txt' Copying src/OBITools.egg-info to /build/obitools-1.2.13+dfsg/debian/obitools/usr/lib/python3.11/dist-packages/OBITools-1.2.13.egg-info Skipping SOURCES.txt running install_scripts creating /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obiannotate -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obicomplement -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obigrep -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obisort -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obitail -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/ali2consensus -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/ecodbtaxstat -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/ecotag -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/ecotaxspecificity -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/ecotaxstat -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/extractreads -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/extractreads2 -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/illuminapairedend -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/ngsfilter -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obiaddtaxids -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obiclean -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obiconvert -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obicount -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obicut -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obidistribute -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obiextract -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obihead -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obijoinpairedend -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obipr2 -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obisample -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obiselect -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obisilva -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obisplit -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obistat -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obisubset -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obitab -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obitaxonomy -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/obiuniq -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin copying build/scripts-3.11/oligotag -> /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiannotate to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obicomplement to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obigrep to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisort to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obitail to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ali2consensus to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ecodbtaxstat to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ecotag to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ecotaxspecificity to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ecotaxstat to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/extractreads to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/extractreads2 to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/illuminapairedend to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/ngsfilter to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiaddtaxids to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiclean to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiconvert to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obicount to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obicut to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obidistribute to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiextract to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obihead to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obijoinpairedend to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obipr2 to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisample to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiselect to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisilva to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisplit to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obistat to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obisubset to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obitab to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obitaxonomy to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/obiuniq to 755 changing mode of /build/obitools-1.2.13+dfsg/debian/obitools/usr/bin/oligotag to 755 make[1]: Leaving directory '/build/obitools-1.2.13+dfsg' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/obitools-1.2.13+dfsg' dh_installman find debian -name "ecoPCR.1*" -delete find debian -name "ecofind.1*" -delete make[1]: Leaving directory '/build/obitools-1.2.13+dfsg' dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package obitools: substitution variable ${sphinxdoc:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package obitools: substitution variable ${sphinxdoc:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'obitools' in '../obitools_1.2.13+dfsg-5_amd64.deb'. dpkg-deb: building package 'obitools-dbgsym' in '../obitools-dbgsym_1.2.13+dfsg-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../obitools_1.2.13+dfsg-5_amd64.buildinfo dpkg-genchanges --build=binary -O../obitools_1.2.13+dfsg-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3383425 and its subdirectories I: Current time: Thu Jun 13 15:20:17 -12 2024 I: pbuilder-time-stamp: 1718335217