I: pbuilder: network access will be disabled during build I: Current time: Fri May 12 20:23:29 -12 2023 I: pbuilder-time-stamp: 1683966209 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mmseqs2_14-7e284+ds-1.dsc] I: copying [./mmseqs2_14-7e284+ds.orig.tar.xz] I: copying [./mmseqs2_14-7e284+ds-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Nov 24 00:19:00 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./mmseqs2_14-7e284+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting mmseqs2 in mmseqs2-14-7e284+ds dpkg-source: info: unpacking mmseqs2_14-7e284+ds.orig.tar.xz dpkg-source: info: unpacking mmseqs2_14-7e284+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_tests.patch dpkg-source: info: applying fix_util_installation.patch dpkg-source: info: applying use_system_gzstream.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1544095/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='d7ecd6ccdb83429f88767854142b5874' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1544095' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fjZHGZWY/pbuilderrc_RaW9 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fjZHGZWY/b1 --logfile b1/build.log mmseqs2_14-7e284+ds-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/1544095/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgzstream-dev, libzstd-dev, zlib1g-dev, libbz2-dev, libsimde-dev, libxxhash-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgzstream-dev; however: Package libgzstream-dev is not installed. pbuilder-satisfydepends-dummy depends on libzstd-dev; however: Package libzstd-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on libxxhash-dev; however: Package libxxhash-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libbz2-dev{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgzstream-dev{a} libgzstream0{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} libxxhash-dev{a} libzstd-dev{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 55 newly installed, 0 to remove and 0 not upgraded. Need to get 34.1 MB of archives. After unpacking 130 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libarchive13 amd64 3.6.2-1 [343 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-9 [386 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 librhash0 amd64 1.4.3-3 [134 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libuv1 amd64 1.44.2-1 [140 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 cmake-data all 3.25.1-1 [2026 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 cmake amd64 3.25.1-1 [8692 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 libbz2-dev amd64 1.0.8-5+b1 [30.9 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libgzstream0 amd64 1.5+git20171107.9a20658-1+b2 [7264 B] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libgzstream-dev amd64 1.5+git20171107.9a20658-1+b2 [7384 B] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libsimde-dev all 0.7.4~rc2-2 [377 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 libxxhash-dev amd64 0.8.1-1 [66.1 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libzstd-dev amd64 1.5.4+dfsg2-5 [354 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Fetched 34.1 MB in 1s (25.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.2-3_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.2-3_amd64.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../04-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../17-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../18-libxml2_2.9.14+dfsg-1.2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../19-libarchive13_3.6.2-1_amd64.deb ... Unpacking libarchive13:amd64 (3.6.2-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../20-libbrotli1_1.0.9-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../21-libsasl2-modules-db_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../22-libsasl2-2_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../23-libldap-2.5-0_2.5.13+dfsg-5_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../24-libnghttp2-14_1.52.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.52.0-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../25-libpsl5_0.21.2-1_amd64.deb ... Unpacking libpsl5:amd64 (0.21.2-1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../26-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/mmseqs2-14-7e284+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mmseqs2_14-7e284+ds-1_source.changes dpkg-buildpackage: info: source package mmseqs2 dpkg-buildpackage: info: source version 14-7e284+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/mmseqs2-14-7e284+ds' dh_auto_clean rm -Rf build-* make[1]: Leaving directory '/build/mmseqs2-14-7e284+ds' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/mmseqs2-14-7e284+ds' export CXXFLAGS="-g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2" && export CFLAGS="-g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2" && dh_auto_configure --builddirectory build_avx2 -- -DEXE_SUFFIX=-avx2 -DUSE_SYSTEM_ZSTD=1 -DVERSION_OVERRIDE=14-7e284+ds-1 -DNATIVE_ARCH=0 && export CXXFLAGS="-g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx" && export CFLAGS="-g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx" && dh_auto_configure --builddirectory build_avx -- -DEXE_SUFFIX=-avx -DUSE_SYSTEM_ZSTD=1 -DVERSION_OVERRIDE=14-7e284+ds-1 -DNATIVE_ARCH=0 && export CXXFLAGS="-g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1" && export CFLAGS="-g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1" && dh_auto_configure --builddirectory build_sse4.1 -- -DEXE_SUFFIX=-sse4.1 -DUSE_SYSTEM_ZSTD=1 -DVERSION_OVERRIDE=14-7e284+ds-1 -DNATIVE_ARCH=0 && export CXXFLAGS="-g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3" && export CFLAGS="-g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3" && dh_auto_configure --builddirectory build_ssse3 -- -DEXE_SUFFIX=-ssse3 -DUSE_SYSTEM_ZSTD=1 -DVERSION_OVERRIDE=14-7e284+ds-1 -DNATIVE_ARCH=0 && export CXXFLAGS="-g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3" && export CFLAGS="-g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3" && dh_auto_configure --builddirectory build_sse3 -- -DEXE_SUFFIX=-sse3 -DUSE_SYSTEM_ZSTD=1 -DVERSION_OVERRIDE=14-7e284+ds-1 -DNATIVE_ARCH=0 && true cd build_avx2 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-avx2 -DUSE_SYSTEM_ZSTD=1 -DVERSION_OVERRIDE=14-7e284\+ds-1 -DNATIVE_ARCH=0 .. -- The CXX compiler identification is GNU 12.2.0 -- The C compiler identification is GNU 12.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Source Directory: /build/mmseqs2-14-7e284+ds -- Project Directory: /build/mmseqs2-14-7e284+ds -- Compiler is GNU -- Found ZSTD: /usr/lib/x86_64-linux-gnu/libzstd.a -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE -- Performing Test HAVE_POSIX_FADVISE - Success -- Performing Test HAVE_POSIX_MADVISE -- Performing Test HAVE_POSIX_MADVISE - Success -- Performing Test ATOMIC_LIBRARY_NATIVE -- Performing Test ATOMIC_LIBRARY_NATIVE - Failed -- Performing Test ATOMIC_LIBRARY_LIB -- Performing Test ATOMIC_LIBRARY_LIB - Success -- Found Atomic: atomic -- IPS4O sorting works -- Found ZLIB -- Performing Test HAVE_ZLIB_CHECK -- Performing Test HAVE_ZLIB_CHECK - Success -- ZLIB works -- Found BZLIB -- Performing Test HAVE_BZLIB_CHECK -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/mmseqs2-14-7e284+ds/build_avx2 cd build_avx && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-avx -DUSE_SYSTEM_ZSTD=1 -DVERSION_OVERRIDE=14-7e284\+ds-1 -DNATIVE_ARCH=0 .. -- The CXX compiler identification is GNU 12.2.0 -- The C compiler identification is GNU 12.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Source Directory: /build/mmseqs2-14-7e284+ds -- Project Directory: /build/mmseqs2-14-7e284+ds -- Compiler is GNU -- Found ZSTD: /usr/lib/x86_64-linux-gnu/libzstd.a -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE -- Performing Test HAVE_POSIX_FADVISE - Success -- Performing Test HAVE_POSIX_MADVISE -- Performing Test HAVE_POSIX_MADVISE - Success -- Performing Test ATOMIC_LIBRARY_NATIVE -- Performing Test ATOMIC_LIBRARY_NATIVE - Failed -- Performing Test ATOMIC_LIBRARY_LIB -- Performing Test ATOMIC_LIBRARY_LIB - Success -- Found Atomic: atomic -- IPS4O sorting works -- Found ZLIB -- Performing Test HAVE_ZLIB_CHECK -- Performing Test HAVE_ZLIB_CHECK - Success -- ZLIB works -- Found BZLIB -- Performing Test HAVE_BZLIB_CHECK -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/mmseqs2-14-7e284+ds/build_avx cd build_sse4.1 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-sse4.1 -DUSE_SYSTEM_ZSTD=1 -DVERSION_OVERRIDE=14-7e284\+ds-1 -DNATIVE_ARCH=0 .. -- The CXX compiler identification is GNU 12.2.0 -- The C compiler identification is GNU 12.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Source Directory: /build/mmseqs2-14-7e284+ds -- Project Directory: /build/mmseqs2-14-7e284+ds -- Compiler is GNU -- Found ZSTD: /usr/lib/x86_64-linux-gnu/libzstd.a -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE -- Performing Test HAVE_POSIX_FADVISE - Success -- Performing Test HAVE_POSIX_MADVISE -- Performing Test HAVE_POSIX_MADVISE - Success -- Performing Test ATOMIC_LIBRARY_NATIVE -- Performing Test ATOMIC_LIBRARY_NATIVE - Failed -- Performing Test ATOMIC_LIBRARY_LIB -- Performing Test ATOMIC_LIBRARY_LIB - Success -- Found Atomic: atomic -- IPS4O sorting works -- Found ZLIB -- Performing Test HAVE_ZLIB_CHECK -- Performing Test HAVE_ZLIB_CHECK - Success -- ZLIB works -- Found BZLIB -- Performing Test HAVE_BZLIB_CHECK -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/mmseqs2-14-7e284+ds/build_sse4.1 cd build_ssse3 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-ssse3 -DUSE_SYSTEM_ZSTD=1 -DVERSION_OVERRIDE=14-7e284\+ds-1 -DNATIVE_ARCH=0 .. -- The CXX compiler identification is GNU 12.2.0 -- The C compiler identification is GNU 12.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Source Directory: /build/mmseqs2-14-7e284+ds -- Project Directory: /build/mmseqs2-14-7e284+ds -- Compiler is GNU -- Found ZSTD: /usr/lib/x86_64-linux-gnu/libzstd.a -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE -- Performing Test HAVE_POSIX_FADVISE - Success -- Performing Test HAVE_POSIX_MADVISE -- Performing Test HAVE_POSIX_MADVISE - Success -- Performing Test ATOMIC_LIBRARY_NATIVE -- Performing Test ATOMIC_LIBRARY_NATIVE - Failed -- Performing Test ATOMIC_LIBRARY_LIB -- Performing Test ATOMIC_LIBRARY_LIB - Success -- Found Atomic: atomic -- IPS4O sorting works -- Found ZLIB -- Performing Test HAVE_ZLIB_CHECK -- Performing Test HAVE_ZLIB_CHECK - Success -- ZLIB works -- Found BZLIB -- Performing Test HAVE_BZLIB_CHECK -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/mmseqs2-14-7e284+ds/build_ssse3 cd build_sse3 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-sse3 -DUSE_SYSTEM_ZSTD=1 -DVERSION_OVERRIDE=14-7e284\+ds-1 -DNATIVE_ARCH=0 .. -- The CXX compiler identification is GNU 12.2.0 -- The C compiler identification is GNU 12.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Source Directory: /build/mmseqs2-14-7e284+ds -- Project Directory: /build/mmseqs2-14-7e284+ds -- Compiler is GNU -- Found ZSTD: /usr/lib/x86_64-linux-gnu/libzstd.a -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE -- Performing Test HAVE_POSIX_FADVISE - Success -- Performing Test HAVE_POSIX_MADVISE -- Performing Test HAVE_POSIX_MADVISE - Success -- Performing Test ATOMIC_LIBRARY_NATIVE -- Performing Test ATOMIC_LIBRARY_NATIVE - Failed -- Performing Test ATOMIC_LIBRARY_LIB -- Performing Test ATOMIC_LIBRARY_LIB - Success -- Found Atomic: atomic -- IPS4O sorting works -- Found ZLIB -- Performing Test HAVE_ZLIB_CHECK -- Performing Test HAVE_ZLIB_CHECK - Success -- ZLIB works -- Found BZLIB -- Performing Test HAVE_BZLIB_CHECK -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/mmseqs2-14-7e284+ds/build_sse3 export CXXFLAGS="-g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3" && export CFLAGS="-g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3" && \ dh_auto_configure --builddirectory build_plain -- -DEXE_SUFFIX=-plain -DUSE_SYSTEM_ZSTD=1 -DVERSION_OVERRIDE=14-7e284+ds-1 -DNATIVE_ARCH=0 cd build_plain && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-plain -DUSE_SYSTEM_ZSTD=1 -DVERSION_OVERRIDE=14-7e284\+ds-1 -DNATIVE_ARCH=0 .. -- The CXX compiler identification is GNU 12.2.0 -- The C compiler identification is GNU 12.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Source Directory: /build/mmseqs2-14-7e284+ds -- Project Directory: /build/mmseqs2-14-7e284+ds -- Compiler is GNU -- Found ZSTD: /usr/lib/x86_64-linux-gnu/libzstd.a -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE -- Performing Test HAVE_POSIX_FADVISE - Success -- Performing Test HAVE_POSIX_MADVISE -- Performing Test HAVE_POSIX_MADVISE - Success -- Performing Test ATOMIC_LIBRARY_NATIVE -- Performing Test ATOMIC_LIBRARY_NATIVE - Failed -- Performing Test ATOMIC_LIBRARY_LIB -- Performing Test ATOMIC_LIBRARY_LIB - Success -- Found Atomic: atomic -- IPS4O sorting works -- Found ZLIB -- Performing Test HAVE_ZLIB_CHECK -- Performing Test HAVE_ZLIB_CHECK - Success -- ZLIB works -- Found BZLIB -- Performing Test HAVE_BZLIB_CHECK -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/mmseqs2-14-7e284+ds/build_plain make[1]: Leaving directory '/build/mmseqs2-14-7e284+ds' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/mmseqs2-14-7e284+ds' mkdir -p /build/mmseqs2-14-7e284+ds/debian/mmseqs2/usr/bin dh_auto_build --builddirectory build_avx2 && dh_auto_build --builddirectory build_avx && dh_auto_build --builddirectory build_sse4.1 && dh_auto_build --builddirectory build_ssse3 && dh_auto_build --builddirectory build_sse3 && true cd build_avx2 && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' /usr/bin/cmake -S/build/mmseqs2-14-7e284+ds -B/build/mmseqs2-14-7e284+ds/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-14-7e284+ds/build_avx2/CMakeFiles /build/mmseqs2-14-7e284+ds/build_avx2//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' cd /build/mmseqs2-14-7e284+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-14-7e284+ds /build/mmseqs2-14-7e284+ds/lib/microtar /build/mmseqs2-14-7e284+ds/build_avx2 /build/mmseqs2-14-7e284+ds/build_avx2/lib/microtar /build/mmseqs2-14-7e284+ds/build_avx2/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' cd /build/mmseqs2-14-7e284+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-14-7e284+ds /build/mmseqs2-14-7e284+ds/lib/cacode /build/mmseqs2-14-7e284+ds/build_avx2 /build/mmseqs2-14-7e284+ds/build_avx2/lib/cacode /build/mmseqs2-14-7e284+ds/build_avx2/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake --color= make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' cd /build/mmseqs2-14-7e284+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-14-7e284+ds /build/mmseqs2-14-7e284+ds/lib/alp /build/mmseqs2-14-7e284+ds/build_avx2 /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake --color= make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' cd /build/mmseqs2-14-7e284+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-14-7e284+ds /build/mmseqs2-14-7e284+ds/lib/ksw2 /build/mmseqs2-14-7e284+ds/build_avx2 /build/mmseqs2-14-7e284+ds/build_avx2/lib/ksw2 /build/mmseqs2-14-7e284+ds/build_avx2/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake --color= make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' cd /build/mmseqs2-14-7e284+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-14-7e284+ds /build/mmseqs2-14-7e284+ds/data /build/mmseqs2-14-7e284+ds/build_avx2 /build/mmseqs2-14-7e284+ds/build_avx2/data /build/mmseqs2-14-7e284+ds/build_avx2/data/CMakeFiles/generated.dir/DependInfo.cmake --color= make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' cd /build/mmseqs2-14-7e284+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-14-7e284+ds /build/mmseqs2-14-7e284+ds/lib/tinyexpr /build/mmseqs2-14-7e284+ds/build_avx2 /build/mmseqs2-14-7e284+ds/build_avx2/lib/tinyexpr /build/mmseqs2-14-7e284+ds/build_avx2/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' cd /build/mmseqs2-14-7e284+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-14-7e284+ds /build/mmseqs2-14-7e284+ds/src/version /build/mmseqs2-14-7e284+ds/build_avx2 /build/mmseqs2-14-7e284+ds/build_avx2/src/version /build/mmseqs2-14-7e284+ds/build_avx2/src/version/CMakeFiles/version.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' [ 1%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o -MF CMakeFiles/cacode.dir/lubksb.cpp.o.d -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/cacode/lubksb.cpp make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' [ 1%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/microtar && /usr/bin/cc -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -MD -MT lib/microtar/CMakeFiles/microtar.dir/microtar.c.o -MF CMakeFiles/microtar.dir/microtar.c.o.d -o CMakeFiles/microtar.dir/microtar.c.o -c /build/mmseqs2-14-7e284+ds/lib/microtar/microtar.c [ 1%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' [ 1%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogprob.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_dynprogprob.cpp cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o -MF CMakeFiles/cacode.dir/lambda_calculator.cpp.o.d -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/cacode/lambda_calculator.cpp [ 1%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o [ 1%] Generating ../generated/VTML80.out.h cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true VTML80.out [ 2%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o [ 3%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o [ 4%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -MD -MT lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -MF CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o.d -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/ksw2/ksw2_extz2_sse.cpp cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o -MF CMakeFiles/cacode.dir/ludcmp.cpp.o.d -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c 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/build/mmseqs2-14-7e284+ds/build_avx2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -MF CMakeFiles/cacode.dir/nrutil.cpp.o.d -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/cacode/nrutil.cpp cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated [ 4%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o [ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-14-7e284+ds/build_avx2/generated/VTML80.out.h [ 5%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o [ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx2/src/version && /usr/bin/c++ -DGIT_SHA1=14-7e284+ds-1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat 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-Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -MF CMakeFiles/alp.dir/njn_random.cpp.o.d -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_random.cpp cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -fsigned-char -MD -MT lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -MF CMakeFiles/tinyexpr.dir/tinyexpr.c.o.d -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < 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/build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstat.cpp cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/VTML80.out.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/VTML80.out.h cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-14-7e284+ds/build_avx2/generated/VTML40.out.h cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/VTML40.out.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/VTML40.out.h.tmp cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/VTML40.out.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/VTML40.out.h [ 7%] Linking CXX static library libversion.a cd /build/mmseqs2-14-7e284+ds/build_avx2/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake [ 7%] Generating ../generated/nucleotide.out.h [ 8%] Generating ../generated/blosum62.out.h cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true nucleotide.out cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blosum62.out cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/build_avx2/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide.out.h cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-14-7e284+ds/build_avx2/generated/blosum62.out.h cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide.out.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide.out.h.tmp /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/blosum62.out.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/blosum62.out.h.tmp /usr/bin/ranlib libversion.a cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide.out.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide.out.h cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/blosum62.out.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/blosum62.out.h make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' [ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_sim.cpp [ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o cd 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/build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true PAM30.out [ 8%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib [ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_dynprogproblim.cpp cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-14-7e284+ds/build_avx2/generated/PAM30.out.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/PAM30.out.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/PAM30.out.h.tmp cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/PAM30.out.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/PAM30.out.h [ 9%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib [ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alignment_evaluer.cpp cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h [ 10%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated [ 11%] Generating ../generated/Library255_may17.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true Library255_may17.lib cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-14-7e284+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-14-7e284+ds/build_avx2/generated/Library255_may17.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp [ 12%] Linking C static library libmicrotar.a cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 [ 13%] Generating ../generated/libPolished_8.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/Library255_may17.lib.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/Library255_may17.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true libPolished_8.lib /usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/Library255_may17.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/Library255_may17.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated /usr/bin/ranlib libmicrotar.a cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-14-7e284+ds/build_avx2/generated/libPolished_8.lib.h make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 373 | ret->bound = s->bound; | ^~ In function ‘new_expr’, inlined from ‘base’ at /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:372:19: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ In function ‘new_expr’, inlined from ‘base’ at /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:366:19: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 93 | ret->type = type; | ~~~~~~~~~~^~~~~~ /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 367 | ret->value = s->value; | ^~ In function ‘new_expr’, inlined from ‘base’ at /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:366:19: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 446 | ret->value = NAN; | ^~ In function ‘new_expr’, inlined from ‘base’ at /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:444:19: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/libPolished_8.lib.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/libPolished_8.lib.h.tmp [ 14%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cs219.lib cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/libPolished_8.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/libPolished_8.lib.h [ 14%] Built target microtar cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated [ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_regression.cpp cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-14-7e284+ds/build_avx2/generated/cs219.lib.h [ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp.cpp [ 15%] Generating ../generated/krona_prelude.html.h [ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true krona_prelude.html cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstatutil.cpp cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/cs219.lib.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/cs219.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-14-7e284+ds/build_avx2/generated/krona_prelude.html.h cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/cs219.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/cs219.lib.h [ 16%] Generating ../generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-14-7e284+ds/build_avx2/generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/result_viz_prelude.html.zst.h [ 16%] Generating ../generated/K4000.crf.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true K4000.crf cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl K4000.crf > /build/mmseqs2-14-7e284+ds/build_avx2/generated/K4000.crf.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/krona_prelude.html.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/krona_prelude.html.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/krona_prelude.html.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/krona_prelude.html.h [ 16%] Generating ../generated/easysearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/easysearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/easysearch.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/easysearch.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/easysearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/easysearch.sh.h [ 17%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easycluster.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/easycluster.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/easycluster.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/easycluster.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/easycluster.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/easycluster.sh.h [ 18%] Generating ../generated/easytaxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/easytaxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/easytaxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/easytaxonomy.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/easytaxonomy.sh.h [ 18%] Generating ../generated/easyrbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easyrbh.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/easyrbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/easyrbh.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/easyrbh.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/easyrbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/easyrbh.sh.h [ 19%] Generating ../generated/blastp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastp.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastp.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastp.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastp.sh.h [ 19%] Generating ../generated/blastpgp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastpgp.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastpgp.sh.h [ 20%] Linking C static library libtinyexpr.a cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastpgp.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastpgp.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastpgp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastpgp.sh.h cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 [ 21%] Generating ../generated/map.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true map.sh /usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated /usr/bin/ranlib libtinyexpr.a cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/map.sh.h make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/map.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/map.sh.h.tmp [ 21%] Built target tinyexpr cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/map.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/map.sh.h [ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_basic.cpp [ 21%] Generating ../generated/rbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true rbh.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/rbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/rbh.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/rbh.sh.h.tmp [ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_data.cpp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/rbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/rbh.sh.h [ 22%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_ioutil.cpp make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' [ 22%] Generating ../generated/linclust.sh.h [ 22%] Built target cacode cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true linclust.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/linclust.sh.h [ 22%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true clustering.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/linclust.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/linclust.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/linclust.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/linclust.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/clustering.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/clustering.sh.h [ 22%] Generating ../generated/cascaded_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated [ 22%] Generating ../generated/update_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/cascaded_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true update_clustering.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/update_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/cascaded_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/cascaded_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/update_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/update_clustering.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/update_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/update_clustering.sh.h [ 22%] Generating ../generated/searchtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true searchtargetprofile.sh [ 23%] Generating ../generated/createindex.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createindex.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchtargetprofile.sh.h [ 23%] Generating ../generated/createtaxdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/createindex.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/createtaxdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/createindex.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/createindex.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/createindex.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/createindex.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/createtaxdb.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/createtaxdb.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/createtaxdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/createtaxdb.sh.h [ 24%] Generating ../generated/translated_search.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true translated_search.sh [ 24%] Generating ../generated/taxpercontig.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxpercontig.sh [ 24%] Generating ../generated/multihitdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitdb.sh [ 25%] Generating ../generated/multihitsearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/translated_search.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxpercontig.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitsearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/translated_search.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/translated_search.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxpercontig.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxpercontig.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/translated_search.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/translated_search.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitsearch.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitdb.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitdb.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxpercontig.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxpercontig.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitsearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/multihitdb.sh.h [ 25%] Generating ../generated/enrich.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true enrich.sh [ 25%] Generating ../generated/blastn.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastn.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated [ 26%] Generating ../generated/taxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxonomy.sh [ 27%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/enrich.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastn.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/enrich.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/enrich.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastn.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastn.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/enrich.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/enrich.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxonomy.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastn.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/blastn.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/taxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/searchslicedtargetprofile.sh.h [ 27%] Generating ../generated/linsearch.sh.h [ 27%] Generating ../generated/databases.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true databases.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated [ 28%] Generating ../generated/nucleotide_clustering.sh.h [ 29%] Generating ../generated/iterativepp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true iterativepp.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/linsearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/databases.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/linsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/linsearch.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl iterativepp.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/iterativepp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/linsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/linsearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide_clustering.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/databases.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/databases.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/iterativepp.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/iterativepp.sh.h.tmp [ 29%] Generating ../generated/tsv2exprofiledb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/databases.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/databases.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true tsv2exprofiledb.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/iterativepp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/iterativepp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx2/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/mmseqs2-14-7e284+ds/build_avx2/generated/tsv2exprofiledb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/tsv2exprofiledb.sh.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/tsv2exprofiledb.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/tsv2exprofiledb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/tsv2exprofiledb.sh.h make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' [ 29%] Built target ksw2 cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx2/generated/K4000.crf.h > /build/mmseqs2-14-7e284+ds/build_avx2/generated/K4000.crf.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx2/generated/K4000.crf.h.tmp /build/mmseqs2-14-7e284+ds/build_avx2/generated/K4000.crf.h make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' [ 29%] Built target generated make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' [ 29%] Built target alp make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/depend make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' cd /build/mmseqs2-14-7e284+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-14-7e284+ds /build/mmseqs2-14-7e284+ds/src /build/mmseqs2-14-7e284+ds/build_avx2 /build/mmseqs2-14-7e284+ds/build_avx2/src /build/mmseqs2-14-7e284+ds/build_avx2/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' [ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_avx2/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering -I/build/mmseqs2-14-7e284+ds/src/linclust -I/build/mmseqs2-14-7e284+ds/src/taxonomy -I/build/mmseqs2-14-7e284+ds/src/util -I/build/mmseqs2-14-7e284+ds/src/. -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -c /build/mmseqs2-14-7e284+ds/src/alignment/Alignment.cpp [ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd 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src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -c /build/mmseqs2-14-7e284+ds/src/alignment/rescorediagonal.cpp cd /build/mmseqs2-14-7e284+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_avx2/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons 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-fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/mmseqs2-14-7e284+ds/src/commons/DBConcat.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash 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-ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /build/mmseqs2-14-7e284+ds/src/commons/FileUtil.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd 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CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -c /build/mmseqs2-14-7e284+ds/src/commons/Sequence.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_avx2/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons 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-I/build/mmseqs2-14-7e284+ds/src/taxonomy -I/build/mmseqs2-14-7e284+ds/src/util -I/build/mmseqs2-14-7e284+ds/src/. -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/mmseqs2-14-7e284+ds/src/MMseqsBase.cpp [100%] Linking CXX static library libmmseqs-framework.a cd /build/mmseqs2-14-7e284+ds/build_avx2/src && /usr/bin/cmake -P CMakeFiles/mmseqs-framework.dir/cmake_clean_target.cmake cd /build/mmseqs2-14-7e284+ds/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmseqs-framework.dir/link.txt --verbose=1 /usr/bin/ar qc libmmseqs-framework.a 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Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blosum62.out cd /build/mmseqs2-14-7e284+ds/build_avx/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -MD -MT lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -MF CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o.d -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/ksw2/ksw2_extz2_sse.cpp [ 5%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true PAM30.out cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -MF CMakeFiles/alp.dir/njn_random.cpp.o.d -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_random.cpp cd /build/mmseqs2-14-7e284+ds/build_avx/src/version && /usr/bin/c++ -DGIT_SHA1=14-7e284+ds-1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -MD -MT src/version/CMakeFiles/version.dir/Version.cpp.o -MF CMakeFiles/version.dir/Version.cpp.o.d -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-14-7e284+ds/src/version/Version.cpp cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-14-7e284+ds/build_avx/generated/VTML80.out.h cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-14-7e284+ds/build_avx/generated/VTML40.out.h cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/VTML80.out.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/VTML80.out.h.tmp cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-14-7e284+ds/build_avx/generated/nucleotide.out.h cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-14-7e284+ds/build_avx/generated/blosum62.out.h cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-14-7e284+ds/build_avx/generated/PAM30.out.h cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/VTML40.out.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/VTML40.out.h.tmp [ 6%] Linking CXX static library libversion.a cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/VTML80.out.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/VTML80.out.h cd /build/mmseqs2-14-7e284+ds/build_avx/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/nucleotide.out.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/nucleotide.out.h.tmp cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/blosum62.out.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/blosum62.out.h.tmp cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/PAM30.out.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/PAM30.out.h.tmp cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/VTML40.out.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/VTML40.out.h cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/nucleotide.out.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/nucleotide.out.h cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/blosum62.out.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/blosum62.out.h cd /build/mmseqs2-14-7e284+ds/build_avx/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/PAM30.out.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/PAM30.out.h [ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_dynprogprobproto.cpp /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o [ 7%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib [ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstat.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstat.cpp /usr/bin/ranlib libversion.a [ 7%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h [ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o [ 9%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx' cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstatmatrix.cpp cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib [ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o [ 9%] Built target version cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_sim.cpp cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-14-7e284+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-14-7e284+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-14-7e284+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h [ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_pvalues.cpp cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp [ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_dynprogproblim.cpp cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h [ 11%] Generating ../generated/libPolished_8.lib.h [ 12%] Generating ../generated/Library255_may17.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true libPolished_8.lib cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true Library255_may17.lib [ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alignment_evaluer.cpp cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-14-7e284+ds/build_avx/generated/Library255_may17.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-14-7e284+ds/build_avx/generated/libPolished_8.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/libPolished_8.lib.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/libPolished_8.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/Library255_may17.lib.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/Library255_may17.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/libPolished_8.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/libPolished_8.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/Library255_may17.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/Library255_may17.lib.h [ 13%] Linking C static library libmicrotar.a cd /build/mmseqs2-14-7e284+ds/build_avx/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake [ 14%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cs219.lib [ 14%] Generating ../generated/krona_prelude.html.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true krona_prelude.html cd /build/mmseqs2-14-7e284+ds/build_avx/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-14-7e284+ds/build_avx/generated/cs219.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-14-7e284+ds/build_avx/generated/krona_prelude.html.h /usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o /usr/bin/ranlib libmicrotar.a /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 373 | ret->bound = s->bound; | ^~ In function ‘new_expr’, inlined from ‘base’ at /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:372:19: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ In function ‘new_expr’, inlined from ‘base’ at /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:366:19: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 93 | ret->type = type; | ~~~~~~~~~~^~~~~~ /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 367 | ret->value = s->value; | ^~ In function ‘new_expr’, inlined from ‘base’ at /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:366:19: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 446 | ret->value = NAN; | ^~ In function ‘new_expr’, inlined from ‘base’ at /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:444:19: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx' cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/cs219.lib.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/cs219.lib.h.tmp [ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_regression.cpp [ 15%] Built target microtar cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/cs219.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/cs219.lib.h [ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp.cpp [ 15%] Generating ../generated/result_viz_prelude.html.zst.h [ 15%] Generating ../generated/K4000.crf.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true K4000.crf cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/krona_prelude.html.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/krona_prelude.html.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl K4000.crf > /build/mmseqs2-14-7e284+ds/build_avx/generated/K4000.crf.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-14-7e284+ds/build_avx/generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/krona_prelude.html.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/krona_prelude.html.h [ 15%] Generating ../generated/easysearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/easysearch.sh.h [ 16%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easycluster.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/easysearch.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/easysearch.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/easysearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/easysearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/easycluster.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/easycluster.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/easycluster.sh.h.tmp [ 17%] Generating ../generated/easytaxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/easycluster.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/easycluster.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/easytaxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/easytaxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/easytaxonomy.sh.h.tmp [ 17%] Generating ../generated/easyrbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/easytaxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easyrbh.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/easyrbh.sh.h [ 18%] Generating ../generated/blastp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastp.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/easyrbh.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/easyrbh.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/easyrbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/easyrbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/blastp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/blastp.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/blastp.sh.h.tmp [ 18%] Generating ../generated/blastpgp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastpgp.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/blastp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/blastp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/blastpgp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/blastpgp.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/blastpgp.sh.h.tmp [ 19%] Generating ../generated/map.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true map.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/blastpgp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/blastpgp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/map.sh.h [ 19%] Generating ../generated/rbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true rbh.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/map.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/map.sh.h.tmp [ 20%] Linking C static library libtinyexpr.a cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/map.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/map.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/rbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/rbh.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/rbh.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/rbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/rbh.sh.h [ 20%] Generating ../generated/linclust.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true linclust.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/linclust.sh.h /usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o /usr/bin/ranlib libtinyexpr.a [ 20%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true clustering.sh make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx' cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/linclust.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/linclust.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated [ 20%] Built target tinyexpr cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/linclust.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/linclust.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/clustering.sh.h [ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/clustering.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstatutil.cpp [ 21%] Generating ../generated/cascaded_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cascaded_clustering.sh make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx' cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated [ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_basic.cpp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/cascaded_clustering.sh.h [ 21%] Generating ../generated/update_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true update_clustering.sh [ 21%] Built target cacode cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/cascaded_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/cascaded_clustering.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/update_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/cascaded_clustering.sh.h [ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_data.cpp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/update_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/update_clustering.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/update_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/update_clustering.sh.h [ 21%] Generating ../generated/searchtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/searchtargetprofile.sh.h [ 22%] Generating ../generated/createindex.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/searchtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/searchtargetprofile.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createindex.sh [ 23%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_ioutil.cpp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/searchtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/createindex.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/createindex.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/createindex.sh.h.tmp [ 23%] Generating ../generated/createtaxdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/createindex.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/createindex.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createtaxdb.sh [ 24%] Generating ../generated/translated_search.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true translated_search.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/createtaxdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated [ 24%] Generating ../generated/taxpercontig.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/translated_search.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/createtaxdb.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/createtaxdb.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/translated_search.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/translated_search.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/createtaxdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/createtaxdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/taxpercontig.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/translated_search.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/translated_search.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/taxpercontig.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/taxpercontig.sh.h.tmp [ 24%] Generating ../generated/multihitdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitdb.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/taxpercontig.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/taxpercontig.sh.h [ 25%] Generating ../generated/multihitsearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitsearch.sh [ 25%] Generating ../generated/enrich.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true enrich.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitsearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/enrich.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitdb.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitdb.sh.h.tmp [ 25%] Generating ../generated/blastn.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastn.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitsearch.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/enrich.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/enrich.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/multihitsearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/enrich.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/enrich.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/blastn.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/blastn.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/blastn.sh.h.tmp [ 26%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/blastn.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/blastn.sh.h [ 27%] Generating ../generated/taxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxonomy.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated [ 27%] Generating ../generated/linsearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/taxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/linsearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/taxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/taxonomy.sh.h.tmp [ 27%] Generating ../generated/databases.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true databases.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/linsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/linsearch.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/taxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/taxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/linsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/linsearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/databases.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/databases.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/databases.sh.h.tmp [ 28%] Generating ../generated/nucleotide_clustering.sh.h [ 29%] Generating ../generated/iterativepp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true nucleotide_clustering.sh [ 29%] Generating ../generated/tsv2exprofiledb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true iterativepp.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true tsv2exprofiledb.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/databases.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/databases.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_avx/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl iterativepp.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/iterativepp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/mmseqs2-14-7e284+ds/build_avx/generated/tsv2exprofiledb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/nucleotide_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/nucleotide_clustering.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/iterativepp.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/iterativepp.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/tsv2exprofiledb.sh.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/tsv2exprofiledb.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/iterativepp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/iterativepp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/tsv2exprofiledb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/tsv2exprofiledb.sh.h make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx' [ 29%] Built target ksw2 cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_avx/generated/K4000.crf.h > /build/mmseqs2-14-7e284+ds/build_avx/generated/K4000.crf.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_avx/generated/K4000.crf.h.tmp /build/mmseqs2-14-7e284+ds/build_avx/generated/K4000.crf.h make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx' [ 29%] Built target generated make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx' [ 29%] Built target alp make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/depend make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx' cd /build/mmseqs2-14-7e284+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix 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src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/mmseqs2-14-7e284+ds/src/clustering/ClusteringAlgorithms.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_avx/generated 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CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /build/mmseqs2-14-7e284+ds/src/commons/BaseMatrix.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_avx/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/mmseqs2-14-7e284+ds/src/commons/CommandCaller.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash 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Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_avx/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering -I/build/mmseqs2-14-7e284+ds/src/linclust -I/build/mmseqs2-14-7e284+ds/src/taxonomy 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src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/mmseqs2-14-7e284+ds/src/commons/DBWriter.cpp [ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_avx/generated -I/build/mmseqs2-14-7e284+ds/src/alignment 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Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_avx/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering -I/build/mmseqs2-14-7e284+ds/src/linclust -I/build/mmseqs2-14-7e284+ds/src/taxonomy 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CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/mmseqs2-14-7e284+ds/src/util/indexdb.cpp [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_avx/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons 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CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/mmseqs2-14-7e284+ds/src/util/mergeclusters.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_avx/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons 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src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/mmseqs2-14-7e284+ds/src/workflow/Linclust.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_avx/generated -I/build/mmseqs2-14-7e284+ds/src/alignment 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-fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/mmseqs2-14-7e284+ds/src/workflow/EasyRbh.cpp [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode 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src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/mmseqs2-14-7e284+ds/src/workflow/Rbh.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_avx/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering 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/build/mmseqs2-14-7e284+ds/src/workflow/EasyTaxonomy.cpp [ 99%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o cd /build/mmseqs2-14-7e284+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_avx/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering 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lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -MF CMakeFiles/cacode.dir/nrutil.cpp.o.d -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/cacode/nrutil.cpp [ 4%] Generating ../generated/VTML40.out.h cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true VTML40.out cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true VTML80.out [ 4%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o [ 4%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -MF CMakeFiles/alp.dir/njn_random.cpp.o.d -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_random.cpp cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated [ 4%] Generating ../generated/nucleotide.out.h cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogprob.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_dynprogprob.cpp cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated [ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_dynprogprobproto.cpp cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true nucleotide.out [ 6%] Generating ../generated/blosum62.out.h cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blosum62.out cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/VTML40.out.h cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/VTML80.out.h cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/nucleotide.out.h cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/VTML40.out.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/VTML40.out.h.tmp cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blosum62.out.h cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/VTML80.out.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/VTML80.out.h.tmp [ 7%] Linking CXX static library libversion.a cd /build/mmseqs2-14-7e284+ds/build_sse4.1/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/VTML40.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/VTML40.out.h cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/VTML80.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/VTML80.out.h cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/nucleotide.out.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/nucleotide.out.h.tmp cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blosum62.out.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blosum62.out.h.tmp cd /build/mmseqs2-14-7e284+ds/build_sse4.1/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/nucleotide.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/nucleotide.out.h cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blosum62.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blosum62.out.h [ 7%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o [ 7%] Generating ../generated/PAM30.out.h cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true PAM30.out cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib /usr/bin/ranlib libversion.a [ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstat.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstat.cpp [ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstatmatrix.cpp make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated [ 8%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/PAM30.out.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated [ 9%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h [ 9%] Built target version cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/PAM30.out.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/PAM30.out.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/PAM30.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/PAM30.out.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h [ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_sim.cpp cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp [ 10%] Generating ../generated/Library255_may17.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true Library255_may17.lib cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/Library255_may17.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h [ 11%] Generating ../generated/libPolished_8.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true libPolished_8.lib [ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_pvalues.cpp [ 12%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cs219.lib cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/libPolished_8.lib.h [ 12%] Generating ../generated/krona_prelude.html.h cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true krona_prelude.html cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cs219.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/libPolished_8.lib.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp [ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_dynprogproblim.cpp [ 14%] Linking C static library libmicrotar.a cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/libPolished_8.lib.h cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/krona_prelude.html.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/Library255_may17.lib.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/Library255_may17.lib.h [ 14%] Generating ../generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true result_viz_prelude.html.zst /usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated /usr/bin/ranlib libmicrotar.a [ 14%] Generating ../generated/K4000.crf.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true K4000.crf make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cs219.lib.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cs219.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cs219.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cs219.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl K4000.crf > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/K4000.crf.h [ 14%] Built target microtar [ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alignment_evaluer.cpp [ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_regression.cpp [ 15%] Generating ../generated/easysearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easysearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easysearch.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easysearch.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easysearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easysearch.sh.h /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 373 | ret->bound = s->bound; | ^~ In function ‘new_expr’, inlined from ‘base’ at /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:372:19: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ In function ‘new_expr’, inlined from ‘base’ at /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:366:19: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 93 | ret->type = type; | ~~~~~~~~~~^~~~~~ /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 367 | ret->value = s->value; | ^~ In function ‘new_expr’, inlined from ‘base’ at /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:366:19: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 446 | ret->value = NAN; | ^~ In function ‘new_expr’, inlined from ‘base’ at /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:444:19: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ [ 16%] Generating ../generated/easycluster.sh.h [ 17%] Generating ../generated/easytaxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easycluster.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easycluster.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easytaxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/krona_prelude.html.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/krona_prelude.html.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/krona_prelude.html.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/krona_prelude.html.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easycluster.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easycluster.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easytaxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easycluster.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easycluster.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easytaxonomy.sh.h [ 17%] Generating ../generated/easyrbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easyrbh.sh [ 18%] Generating ../generated/blastp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastp.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easyrbh.sh.h [ 18%] Generating ../generated/blastpgp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastpgp.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easyrbh.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easyrbh.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastpgp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastp.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastp.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easyrbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/easyrbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastpgp.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastpgp.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastpgp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastpgp.sh.h [ 19%] Generating ../generated/map.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true map.sh [ 19%] Generating ../generated/rbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true rbh.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated [ 19%] Generating ../generated/linclust.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true linclust.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/map.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/rbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linclust.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/rbh.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/rbh.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/map.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/map.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/rbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/rbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/map.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/map.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linclust.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linclust.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linclust.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linclust.sh.h [ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp.cpp [ 19%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true clustering.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/clustering.sh.h [ 19%] Generating ../generated/cascaded_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/clustering.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cascaded_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cascaded_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/cascaded_clustering.sh.h [ 19%] Generating ../generated/update_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true update_clustering.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/update_clustering.sh.h [ 19%] Generating ../generated/searchtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/update_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/update_clustering.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchtargetprofile.sh.h [ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/update_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/update_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstatutil.cpp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchtargetprofile.sh.h [ 21%] Generating ../generated/createindex.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createindex.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated [ 21%] Generating ../generated/createtaxdb.sh.h [ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_basic.cpp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createindex.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createtaxdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createindex.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createindex.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createindex.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createindex.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createtaxdb.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/createtaxdb.sh.h [ 22%] Generating ../generated/translated_search.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true translated_search.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/translated_search.sh.h [ 23%] Linking C static library libtinyexpr.a cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake [ 23%] Generating ../generated/taxpercontig.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/translated_search.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/translated_search.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/translated_search.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/translated_search.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxpercontig.sh.h /usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o /usr/bin/ranlib libtinyexpr.a [ 23%] Generating ../generated/multihitdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxpercontig.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitdb.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxpercontig.sh.h [ 23%] Built target tinyexpr cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitdb.sh.h [ 23%] Built target cacode [ 23%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_data.cpp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitdb.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitdb.sh.h.tmp [ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o [ 24%] Generating ../generated/enrich.sh.h cd /build/mmseqs2-14-7e284+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_ioutil.cpp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true enrich.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitdb.sh.h [ 25%] Generating ../generated/multihitsearch.sh.h make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated [ 25%] Generating ../generated/blastn.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastn.sh [ 25%] Built target ksw2 cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/enrich.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastn.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitsearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/enrich.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/enrich.sh.h.tmp [ 26%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/enrich.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/enrich.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastn.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastn.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/multihitsearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastn.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/blastn.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp [ 27%] Generating ../generated/taxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxonomy.sh [ 27%] Generating ../generated/databases.sh.h [ 27%] Generating ../generated/linsearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true databases.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/databases.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linsearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxonomy.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/taxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linsearch.sh.h.tmp [ 28%] Generating ../generated/nucleotide_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/linsearch.sh.h [ 29%] Generating ../generated/iterativepp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true iterativepp.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/databases.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/databases.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/databases.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/databases.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl iterativepp.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/iterativepp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/iterativepp.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/iterativepp.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/nucleotide_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/nucleotide_clustering.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/iterativepp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/iterativepp.sh.h [ 29%] Generating ../generated/tsv2exprofiledb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true tsv2exprofiledb.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse4.1/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/K4000.crf.h > /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/K4000.crf.h.tmp make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/K4000.crf.h.tmp /build/mmseqs2-14-7e284+ds/build_sse4.1/generated/K4000.crf.h [ 29%] Built target alp make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' [ 29%] Built target generated make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/depend make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' cd /build/mmseqs2-14-7e284+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-14-7e284+ds /build/mmseqs2-14-7e284+ds/src /build/mmseqs2-14-7e284+ds/build_sse4.1 /build/mmseqs2-14-7e284+ds/build_sse4.1/src /build/mmseqs2-14-7e284+ds/build_sse4.1/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_sse4.1/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit 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-I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstat.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstat.cpp [ 4%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar 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-I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -MD -MT src/version/CMakeFiles/version.dir/Version.cpp.o -MF CMakeFiles/version.dir/Version.cpp.o.d -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-14-7e284+ds/src/version/Version.cpp [ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib 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-ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -fsigned-char -MD -MT lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -MF CMakeFiles/tinyexpr.dir/tinyexpr.c.o.d -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstatmatrix.cpp cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/VTML80.out.h cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/VTML80.out.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/VTML80.out.h.tmp cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/VTML80.out.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/VTML80.out.h [ 6%] Linking CXX static library libversion.a cd /build/mmseqs2-14-7e284+ds/build_ssse3/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake [ 7%] Generating ../generated/VTML40.out.h cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true VTML40.out [ 7%] Generating ../generated/nucleotide.out.h cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true nucleotide.out cd /build/mmseqs2-14-7e284+ds/build_ssse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/VTML40.out.h /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide.out.h /usr/bin/ranlib libversion.a cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/VTML40.out.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/VTML40.out.h.tmp [ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_pvalues.cpp make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_ssse3' cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide.out.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide.out.h.tmp cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/VTML40.out.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/VTML40.out.h [ 7%] Built target version cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide.out.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide.out.h [ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o [ 8%] Generating ../generated/PAM30.out.h cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_dynprogproblim.cpp cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true PAM30.out [ 9%] Generating ../generated/blosum62.out.h cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blosum62.out cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/PAM30.out.h cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated [ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blosum62.out.h cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/PAM30.out.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/PAM30.out.h.tmp cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alignment_evaluer.cpp cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blosum62.out.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blosum62.out.h.tmp cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/PAM30.out.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/PAM30.out.h [ 10%] Linking C static library libmicrotar.a cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blosum62.out.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blosum62.out.h cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 [ 10%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib /usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o /usr/bin/ranlib libmicrotar.a [ 10%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_ssse3' cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated [ 11%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib [ 11%] Built target microtar cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h [ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o [ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_regression.cpp cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp.cpp cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 373 | ret->bound = s->bound; | ^~ In function ‘new_expr’, inlined from ‘base’ at /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:372:19: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ In function ‘new_expr’, inlined from ‘base’ at /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:366:19: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 93 | ret->type = type; | ~~~~~~~~~~^~~~~~ /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 367 | ret->value = s->value; | ^~ In function ‘new_expr’, inlined from ‘base’ at /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:366:19: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: [ 13%] Generating ../generated/Library255_may17.lib.h /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 446 | ret->value = NAN; | ^~ In function ‘new_expr’, inlined from ‘base’ at /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:444:19: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true Library255_may17.lib [ 14%] Generating ../generated/libPolished_8.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true libPolished_8.lib cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated [ 15%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cs219.lib cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/Library255_may17.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/libPolished_8.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/libPolished_8.lib.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/libPolished_8.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cs219.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/libPolished_8.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/libPolished_8.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/Library255_may17.lib.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/Library255_may17.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cs219.lib.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cs219.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/Library255_may17.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/Library255_may17.lib.h [ 15%] Generating ../generated/krona_prelude.html.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true krona_prelude.html cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cs219.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cs219.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/krona_prelude.html.h [ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstatutil.cpp [ 16%] Generating ../generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/krona_prelude.html.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/krona_prelude.html.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/krona_prelude.html.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/krona_prelude.html.h [ 16%] Generating ../generated/easysearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated [ 16%] Generating ../generated/K4000.crf.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true K4000.crf cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easysearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easysearch.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easysearch.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl K4000.crf > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/K4000.crf.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easysearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easysearch.sh.h [ 17%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easycluster.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easycluster.sh.h [ 18%] Linking C static library libtinyexpr.a cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easycluster.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easycluster.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easycluster.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easycluster.sh.h cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 /usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o [ 19%] Generating ../generated/easytaxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easytaxonomy.sh /usr/bin/ranlib libtinyexpr.a [ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_basic.cpp make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_ssse3' cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easytaxonomy.sh.h [ 19%] Built target tinyexpr cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easytaxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easytaxonomy.sh.h [ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_data.cpp [ 19%] Generating ../generated/easyrbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easyrbh.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easyrbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easyrbh.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easyrbh.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easyrbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/easyrbh.sh.h [ 20%] Generating ../generated/blastp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastp.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastp.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastp.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastp.sh.h [ 20%] Generating ../generated/blastpgp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastpgp.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastpgp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastpgp.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastpgp.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastpgp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastpgp.sh.h [ 21%] Generating ../generated/map.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true map.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/map.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/map.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/map.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/map.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/map.sh.h make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_ssse3' [ 22%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o [ 22%] Generating ../generated/rbh.sh.h cd /build/mmseqs2-14-7e284+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_ioutil.cpp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true rbh.sh [ 22%] Built target cacode cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated [ 22%] Generating ../generated/linclust.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/rbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true linclust.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/rbh.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/rbh.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linclust.sh.h make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_ssse3' [ 22%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/rbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/rbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true clustering.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linclust.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linclust.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated [ 22%] Built target ksw2 cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linclust.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linclust.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/clustering.sh.h.tmp [ 22%] Generating ../generated/cascaded_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/clustering.sh.h [ 22%] Generating ../generated/update_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true update_clustering.sh [ 22%] Generating ../generated/searchtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cascaded_clustering.sh.h [ 23%] Generating ../generated/createindex.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createindex.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/update_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cascaded_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/update_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/update_clustering.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/cascaded_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createindex.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/update_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/update_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createindex.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createindex.sh.h.tmp [ 23%] Generating ../generated/createtaxdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createindex.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createindex.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createtaxdb.sh [ 24%] Generating ../generated/translated_search.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true translated_search.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated [ 24%] Generating ../generated/taxpercontig.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated [ 24%] Generating ../generated/multihitdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitdb.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createtaxdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/translated_search.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxpercontig.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createtaxdb.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createtaxdb.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/translated_search.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/translated_search.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxpercontig.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxpercontig.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createtaxdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/createtaxdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/translated_search.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/translated_search.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitdb.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitdb.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxpercontig.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxpercontig.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitdb.sh.h [ 25%] Generating ../generated/multihitsearch.sh.h [ 25%] Generating ../generated/blastn.sh.h [ 26%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastn.sh [ 26%] Generating ../generated/enrich.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitsearch.sh [ 27%] Generating ../generated/taxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true enrich.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh [ 27%] Generating ../generated/linsearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxonomy.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastn.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitsearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/enrich.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linsearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastn.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastn.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitsearch.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/enrich.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/enrich.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxonomy.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linsearch.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastn.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/blastn.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/multihitsearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/enrich.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/enrich.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/taxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/linsearch.sh.h [ 27%] Generating ../generated/databases.sh.h [ 28%] Generating ../generated/iterativepp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true iterativepp.sh [ 29%] Generating ../generated/nucleotide_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true databases.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true nucleotide_clustering.sh [ 29%] Generating ../generated/tsv2exprofiledb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true tsv2exprofiledb.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl iterativepp.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/iterativepp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_ssse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/databases.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/iterativepp.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/iterativepp.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/tsv2exprofiledb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/databases.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/databases.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/iterativepp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/iterativepp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/tsv2exprofiledb.sh.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/tsv2exprofiledb.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/databases.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/databases.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/tsv2exprofiledb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/tsv2exprofiledb.sh.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_ssse3/generated/K4000.crf.h > /build/mmseqs2-14-7e284+ds/build_ssse3/generated/K4000.crf.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_ssse3/generated/K4000.crf.h.tmp /build/mmseqs2-14-7e284+ds/build_ssse3/generated/K4000.crf.h make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_ssse3' [ 29%] Built target generated make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_ssse3' [ 29%] Built target alp make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/depend make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_ssse3' cd /build/mmseqs2-14-7e284+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-14-7e284+ds /build/mmseqs2-14-7e284+ds/src /build/mmseqs2-14-7e284+ds/build_ssse3 /build/mmseqs2-14-7e284+ds/build_ssse3/src /build/mmseqs2-14-7e284+ds/build_ssse3/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_ssse3' make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/mmseqs2-14-7e284+ds/build_ssse3' [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o [ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o [ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o cd /build/mmseqs2-14-7e284+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_ssse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering -I/build/mmseqs2-14-7e284+ds/src/linclust -I/build/mmseqs2-14-7e284+ds/src/taxonomy -I/build/mmseqs2-14-7e284+ds/src/util -I/build/mmseqs2-14-7e284+ds/src/. -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -MF 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-I/build/mmseqs2-14-7e284+ds/src/. -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -c /build/mmseqs2-14-7e284+ds/src/alignment/MsaFilter.cpp cd /build/mmseqs2-14-7e284+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp 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-fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/mmseqs2-14-7e284+ds/src/commons/Application.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o cd /build/mmseqs2-14-7e284+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp 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-fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /build/mmseqs2-14-7e284+ds/src/commons/ExpressionParser.cpp [ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o cd /build/mmseqs2-14-7e284+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp 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-ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/mmseqs2-14-7e284+ds/src/commons/SubstitutionMatrix.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o cd /build/mmseqs2-14-7e284+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib 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-fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/mmseqs2-14-7e284+ds/src/commons/Util.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o cd /build/mmseqs2-14-7e284+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp 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CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/mmseqs2-14-7e284+ds/src/prefiltering/CacheFriendlyOperations.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o cd /build/mmseqs2-14-7e284+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_ssse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment 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src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/mmseqs2-14-7e284+ds/src/prefiltering/Prefiltering.cpp [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o cd /build/mmseqs2-14-7e284+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_ssse3/generated 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src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/mmseqs2-14-7e284+ds/src/util/tsv2db.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o cd /build/mmseqs2-14-7e284+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_ssse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering 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-I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstatmatrix.cpp cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML80.out.h cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML80.out.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML80.out.h.tmp cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML40.out.h cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML80.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML80.out.h cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML40.out.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML40.out.h.tmp [ 7%] Linking CXX static library libversion.a cd /build/mmseqs2-14-7e284+ds/build_sse3/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML40.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/VTML40.out.h [ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_sim.cpp [ 7%] Generating ../generated/nucleotide.out.h cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true nucleotide.out cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/build_sse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 [ 8%] Generating ../generated/blosum62.out.h cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blosum62.out [ 8%] Generating ../generated/PAM30.out.h cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-14-7e284+ds/build_sse3/generated/nucleotide.out.h cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true PAM30.out cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/nucleotide.out.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/nucleotide.out.h.tmp cd /build/mmseqs2-14-7e284+ds/data && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-14-7e284+ds/build_sse3/generated/blosum62.out.h /usr/bin/ranlib libversion.a cd /build/mmseqs2-14-7e284+ds/data && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-14-7e284+ds/build_sse3/generated/PAM30.out.h cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/nucleotide.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/nucleotide.out.h make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse3' cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/PAM30.out.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/PAM30.out.h.tmp cd /build/mmseqs2-14-7e284+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/blosum62.out.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/blosum62.out.h.tmp [ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_pvalues.cpp cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/PAM30.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/PAM30.out.h [ 8%] Built target version cd /build/mmseqs2-14-7e284+ds/data && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/blosum62.out.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/blosum62.out.h [ 8%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h [ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_dynprogproblim.cpp [ 9%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib [ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alignment_evaluer.cpp cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp [ 10%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-14-7e284+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h [ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_regression.cpp [ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp.cpp [ 12%] Generating ../generated/Library255_may17.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true Library255_may17.lib cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated [ 13%] Linking C static library libmicrotar.a cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-14-7e284+ds/build_sse3/generated/Library255_may17.lib.h [ 14%] Generating ../generated/libPolished_8.lib.h cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true libPolished_8.lib cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-14-7e284+ds/build_sse3/generated/libPolished_8.lib.h /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 373 | ret->bound = s->bound; | ^~ In function ‘new_expr’, inlined from ‘base’ at /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:372:19: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ In function ‘new_expr’, inlined from ‘base’ at /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:366:19: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 93 | ret->type = type; | ~~~~~~~~~~^~~~~~ /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 367 | ret->value = s->value; | ^~ In function ‘new_expr’, inlined from ‘base’ at /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:366:19: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds] 446 | ret->value = NAN; | ^~ In function ‘new_expr’, inlined from ‘base’ at /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:444:19: /build/mmseqs2-14-7e284+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ /usr/bin/ranlib libmicrotar.a cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/libPolished_8.lib.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/libPolished_8.lib.h.tmp make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse3' cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/Library255_may17.lib.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/Library255_may17.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/libPolished_8.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/libPolished_8.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/Library255_may17.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/Library255_may17.lib.h [ 14%] Built target microtar [ 15%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cs219.lib [ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_localmaxstatutil.cpp cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated [ 16%] Generating ../generated/krona_prelude.html.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-14-7e284+ds/build_sse3/generated/cs219.lib.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true krona_prelude.html cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-14-7e284+ds/build_sse3/generated/krona_prelude.html.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/cs219.lib.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/cs219.lib.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/cs219.lib.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/cs219.lib.h [ 16%] Generating ../generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-14-7e284+ds/build_sse3/generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/krona_prelude.html.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/krona_prelude.html.h.tmp [ 16%] Generating ../generated/K4000.crf.h cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true K4000.crf cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/krona_prelude.html.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/krona_prelude.html.h cd /build/mmseqs2-14-7e284+ds/data/resources && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/resources && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl K4000.crf > /build/mmseqs2-14-7e284+ds/build_sse3/generated/K4000.crf.h [ 16%] Generating ../generated/easysearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/easysearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/easysearch.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/easysearch.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/easysearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/easysearch.sh.h [ 17%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easycluster.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/easycluster.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/easycluster.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/easycluster.sh.h.tmp [ 18%] Linking C static library libtinyexpr.a cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/easycluster.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/easycluster.sh.h cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 [ 19%] Generating ../generated/easytaxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated /usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o /usr/bin/ranlib libtinyexpr.a cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/easytaxonomy.sh.h make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse3' cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/easytaxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/easytaxonomy.sh.h.tmp [ 19%] Built target tinyexpr cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/easytaxonomy.sh.h make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse3' [ 19%] Generating ../generated/easyrbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true easyrbh.sh [ 19%] Built target cacode [ 20%] Generating ../generated/blastp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastp.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/easyrbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated [ 20%] Generating ../generated/blastpgp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastpgp.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/easyrbh.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/easyrbh.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/easyrbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/easyrbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastpgp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastp.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastp.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastpgp.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastpgp.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastpgp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastpgp.sh.h [ 21%] Generating ../generated/map.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true map.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated [ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o [ 21%] Generating ../generated/rbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true rbh.sh cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_basic.cpp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/map.sh.h [ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/sls_alp_data.cpp cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/rbh.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/map.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/map.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/map.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/map.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/rbh.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/rbh.sh.h.tmp [ 22%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-14-7e284+ds/lib/alp/njn_ioutil.cpp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/rbh.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/rbh.sh.h [ 22%] Generating ../generated/linclust.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true linclust.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/linclust.sh.h [ 22%] Generating ../generated/cascaded_clustering.sh.h [ 22%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true clustering.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/linclust.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/linclust.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse3' cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/linclust.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/linclust.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/cascaded_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/cascaded_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp [ 22%] Generating ../generated/update_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true update_clustering.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/cascaded_clustering.sh.h [ 22%] Built target ksw2 cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/clustering.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/update_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/clustering.sh.h [ 22%] Generating ../generated/searchtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true searchtargetprofile.sh [ 23%] Generating ../generated/createindex.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createindex.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/update_clustering.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/update_clustering.sh.h.tmp [ 23%] Generating ../generated/createtaxdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/createindex.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/update_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/update_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/createindex.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/createindex.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/createtaxdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/createindex.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/createindex.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/createtaxdb.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/createtaxdb.sh.h.tmp [ 24%] Generating ../generated/translated_search.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true translated_search.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/createtaxdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/createtaxdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated [ 24%] Generating ../generated/taxpercontig.sh.h [ 24%] Generating ../generated/multihitdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitdb.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/translated_search.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/translated_search.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/translated_search.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxpercontig.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/translated_search.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/translated_search.sh.h [ 25%] Generating ../generated/multihitsearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitdb.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitdb.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxpercontig.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxpercontig.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitdb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitdb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxpercontig.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxpercontig.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitsearch.sh.h [ 25%] Generating ../generated/enrich.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitsearch.sh.h.tmp [ 25%] Generating ../generated/blastn.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true enrich.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true blastn.sh [ 26%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitsearch.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/multihitsearch.sh.h [ 27%] Generating ../generated/taxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true taxonomy.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/enrich.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastn.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/enrich.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/enrich.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastn.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastn.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxonomy.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxonomy.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/enrich.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/enrich.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastn.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/blastn.sh.h [ 27%] Generating ../generated/linsearch.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxonomy.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/taxonomy.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated [ 27%] Generating ../generated/databases.sh.h [ 28%] Generating ../generated/nucleotide_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true databases.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/linsearch.sh.h [ 29%] Generating ../generated/iterativepp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true iterativepp.sh [ 29%] Generating ../generated/tsv2exprofiledb.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/checkshell.sh true tsv2exprofiledb.sh cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/linsearch.sh.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/linsearch.sh.h.tmp cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p /build/mmseqs2-14-7e284+ds/build_sse3/generated cd /build/mmseqs2-14-7e284+ds/data/workflow && /build/mmseqs2-14-7e284+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-14-7e284+ds/build_sse3/generated/databases.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mkdir -p 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cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/iterativepp.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/iterativepp.sh.h cd /build/mmseqs2-14-7e284+ds/data/workflow && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/tsv2exprofiledb.sh.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/tsv2exprofiledb.sh.h cd /build/mmseqs2-14-7e284+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-14-7e284+ds/build_sse3/generated/K4000.crf.h > /build/mmseqs2-14-7e284+ds/build_sse3/generated/K4000.crf.h.tmp cd /build/mmseqs2-14-7e284+ds/data/resources && mv -f /build/mmseqs2-14-7e284+ds/build_sse3/generated/K4000.crf.h.tmp /build/mmseqs2-14-7e284+ds/build_sse3/generated/K4000.crf.h 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CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/mmseqs2-14-7e284+ds/src/commons/Application.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_sse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons 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src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/mmseqs2-14-7e284+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_sse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering -I/build/mmseqs2-14-7e284+ds/src/linclust -I/build/mmseqs2-14-7e284+ds/src/taxonomy 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-I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering -I/build/mmseqs2-14-7e284+ds/src/linclust -I/build/mmseqs2-14-7e284+ds/src/taxonomy -I/build/mmseqs2-14-7e284+ds/src/util -I/build/mmseqs2-14-7e284+ds/src/. -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/mmseqs2-14-7e284+ds/src/prefiltering/Main.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_sse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering -I/build/mmseqs2-14-7e284+ds/src/linclust -I/build/mmseqs2-14-7e284+ds/src/taxonomy -I/build/mmseqs2-14-7e284+ds/src/util -I/build/mmseqs2-14-7e284+ds/src/. -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/mmseqs2-14-7e284+ds/src/prefiltering/Prefiltering.cpp [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_sse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering -I/build/mmseqs2-14-7e284+ds/src/linclust -I/build/mmseqs2-14-7e284+ds/src/taxonomy -I/build/mmseqs2-14-7e284+ds/src/util -I/build/mmseqs2-14-7e284+ds/src/. -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization 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Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_sse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons -I/build/mmseqs2-14-7e284+ds/src/multihit -I/build/mmseqs2-14-7e284+ds/src/prefiltering -I/build/mmseqs2-14-7e284+ds/src/linclust -I/build/mmseqs2-14-7e284+ds/src/taxonomy 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src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/mmseqs2-14-7e284+ds/src/util/createseqfiledb.cpp [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_sse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/mmseqs2-14-7e284+ds/src/util/renamedbkeys.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o cd /build/mmseqs2-14-7e284+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-14-7e284+ds/lib/tinyexpr -I/build/mmseqs2-14-7e284+ds/lib/microtar -I/build/mmseqs2-14-7e284+ds/lib/simde -I/build/mmseqs2-14-7e284+ds/lib -I/build/mmseqs2-14-7e284+ds/lib/simd -I/build/mmseqs2-14-7e284+ds/lib/alp -I/build/mmseqs2-14-7e284+ds/lib/cacode -I/build/mmseqs2-14-7e284+ds/lib/ksw2 -I/build/mmseqs2-14-7e284+ds/lib/xxhash -I/build/mmseqs2-14-7e284+ds/lib/ips4o -I/build/mmseqs2-14-7e284+ds/build_sse3/generated -I/build/mmseqs2-14-7e284+ds/src/alignment -I/build/mmseqs2-14-7e284+ds/src/clustering -I/build/mmseqs2-14-7e284+ds/src/commons 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"CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o" "CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o" ../lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o ../lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o ../lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o ../lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o ../lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o ../lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o ../lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o ../lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o ../lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o ../lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o 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-I/build/mmseqs2-14-7e284+ds/src/util -I/build/mmseqs2-14-7e284+ds/src/. -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-sse3.dir/mmseqs.cpp.o -MF CMakeFiles/mmseqs-sse3.dir/mmseqs.cpp.o.d -o CMakeFiles/mmseqs-sse3.dir/mmseqs.cpp.o -c /build/mmseqs2-14-7e284+ds/src/mmseqs.cpp [100%] Linking CXX executable mmseqs-sse3 cd /build/mmseqs2-14-7e284+ds/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmseqs-sse3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/mmseqs2-14-7e284+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp "CMakeFiles/mmseqs-sse3.dir/mmseqs.cpp.o" -o mmseqs-sse3 libmmseqs-framework.a version/libversion.a -latomic ../lib/tinyexpr/libtinyexpr.a -lm -Wl,-Bstatic -lzstd ../lib/microtar/libmicrotar.a -Wl,-Bdynamic -lgzstream -lz -lbz2 make[4]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse3' [100%] Built target mmseqs-sse3 make[3]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse3' /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-14-7e284+ds/build_sse3/CMakeFiles 0 make[2]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse3' make[1]: Leaving directory '/build/mmseqs2-14-7e284+ds' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/mmseqs2-14-7e284+ds' dh_install -pmmseqs2 debian/bin/simd-dispatch /usr/lib/mmseqs2/ dh_auto_install --builddirectory build_avx2 && dh_auto_install --builddirectory build_avx && dh_auto_install --builddirectory build_sse4.1 && dh_auto_install --builddirectory build_ssse3 && dh_auto_install --builddirectory build_sse3 && true cd build_avx2 && make -j15 install DESTDIR=/build/mmseqs2-14-7e284\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' /usr/bin/cmake -S/build/mmseqs2-14-7e284+ds -B/build/mmseqs2-14-7e284+ds/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx2' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/mmseqs2-14-7e284+ds/debian/tmp/usr/bin/mmseqs-avx2 make[2]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx2' cd build_avx && make -j15 install DESTDIR=/build/mmseqs2-14-7e284\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx' /usr/bin/cmake -S/build/mmseqs2-14-7e284+ds -B/build/mmseqs2-14-7e284+ds/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/mmseqs2-14-7e284+ds/build_avx' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/mmseqs2-14-7e284+ds/debian/tmp/usr/bin/mmseqs-avx make[2]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_avx' cd build_sse4.1 && make -j15 install DESTDIR=/build/mmseqs2-14-7e284\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' /usr/bin/cmake -S/build/mmseqs2-14-7e284+ds -B/build/mmseqs2-14-7e284+ds/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/mmseqs2-14-7e284+ds/debian/tmp/usr/bin/mmseqs-sse4.1 make[2]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse4.1' cd build_ssse3 && make -j15 install DESTDIR=/build/mmseqs2-14-7e284\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/mmseqs2-14-7e284+ds/build_ssse3' /usr/bin/cmake -S/build/mmseqs2-14-7e284+ds -B/build/mmseqs2-14-7e284+ds/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/mmseqs2-14-7e284+ds/build_ssse3' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_ssse3' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/mmseqs2-14-7e284+ds/debian/tmp/usr/bin/mmseqs-ssse3 make[2]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_ssse3' cd build_sse3 && make -j15 install DESTDIR=/build/mmseqs2-14-7e284\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/mmseqs2-14-7e284+ds/build_sse3' /usr/bin/cmake -S/build/mmseqs2-14-7e284+ds -B/build/mmseqs2-14-7e284+ds/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/mmseqs2-14-7e284+ds/build_sse3' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse3' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/mmseqs2-14-7e284+ds/debian/tmp/usr/bin/mmseqs-sse3 make[2]: Leaving directory '/build/mmseqs2-14-7e284+ds/build_sse3' dh_install -pmmseqs2 usr/bin/mmseqs-* usr/bin/ set -e && cd /build/mmseqs2-14-7e284+ds/debian/mmseqs2/usr/bin \ && for prog in mmseqs ; do \ ln -s ../lib/mmseqs2/simd-dispatch ${prog} ; done make[1]: Leaving directory '/build/mmseqs2-14-7e284+ds' debian/rules override_dh_install-arch make[1]: Entering directory '/build/mmseqs2-14-7e284+ds' dh_install --arch mkdir -p debian/mmseqs2/usr/lib/mmseqs2/test cp src/test/*.index debian/mmseqs2/usr/lib/mmseqs2/test/ cp src/test/dataGap debian/mmseqs2/usr/lib/mmseqs2/test/ cp src/test/dataLinear debian/mmseqs2/usr/lib/mmseqs2/test/ #cp -r obj-x86_64-linux-gnu/src/test debian/mmseqs2/usr/lib/mmseqs2/ # We also remove unneeded files & folders like CMake rm -rf debian/mmseqs2/usr/lib/mmseqs2/test/CMakeFiles \ debian/mmseqs2/usr/lib/mmseqs2/test/*.cmake \ debian/mmseqs2/usr/lib/mmseqs2/test/Makefile make[1]: Leaving directory '/build/mmseqs2-14-7e284+ds' debian/rules override_dh_install-indep make[1]: Entering directory '/build/mmseqs2-14-7e284+ds' dh_install --indep # We also remove unneeded files & folders like CMake rm -rf debian/mmseqs2-examples/usr/share/doc/mmseqs2/example-data/*.lib \ debian/mmseqs2-examples/usr/share/doc/mmseqs2/example-data/CovSeqidQscPercMinDiag.out \ debian/mmseqs2-examples/usr/share/doc/mmseqs2/example-data/CovSeqidQscPercMinDiagTargetCov.out make[1]: Leaving directory '/build/mmseqs2-14-7e284+ds' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb debian/rules override_dh_gencontrol make[1]: Entering directory '/build/mmseqs2-14-7e284+ds' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.4~rc2-2), " make[1]: Leaving directory '/build/mmseqs2-14-7e284+ds' dh_md5sums dh_builddeb dpkg-deb: building package 'mmseqs2-dbgsym' in '../mmseqs2-dbgsym_14-7e284+ds-1_amd64.deb'. dpkg-deb: building package 'mmseqs2-examples' in '../mmseqs2-examples_14-7e284+ds-1_all.deb'. dpkg-deb: building package 'mmseqs2' in '../mmseqs2_14-7e284+ds-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../mmseqs2_14-7e284+ds-1_amd64.buildinfo dpkg-genchanges --build=binary -O../mmseqs2_14-7e284+ds-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1544095 and its subdirectories I: Current time: Fri May 12 20:59:01 -12 2023 I: pbuilder-time-stamp: 1683968341