I: pbuilder: network access will be disabled during build I: Current time: Thu Jan 11 17:54:08 -12 2024 I: pbuilder-time-stamp: 1705038848 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [lmfit-py_1.1.0-1.dsc] I: copying [./lmfit-py_1.1.0.orig.tar.gz] I: copying [./lmfit-py_1.1.0-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Dec 30 17:03:04 2022 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./lmfit-py_1.1.0-1.dsc: no acceptable signature found dpkg-source: info: extracting lmfit-py in lmfit-py-1.1.0 dpkg-source: info: unpacking lmfit-py_1.1.0.orig.tar.gz dpkg-source: info: unpacking lmfit-py_1.1.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying deactivate_test.patch dpkg-source: info: applying 0004-jupyter_sphinx-is-not-yet-working-on-Debian.patch dpkg-source: info: applying preserve_version.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1201596/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='80691e15f594470789da502a58110e04' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1201596' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1AZ4qhAe/pbuilderrc_r8lm --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1AZ4qhAe/b1 --logfile b1/build.log lmfit-py_1.1.0-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 23 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 23 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 23 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 23 2023 more -rwsr-xr-x 1 root root 59704 Mar 23 2023 mount -rwxr-xr-x 1 root root 18744 Mar 23 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Jul 28 23:46 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 23 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Jul 28 23:46 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 23 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 23 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/1201596/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, pybuild-plugin-pyproject, dh-sequence-numpy3, dh-sequence-python3, dh-sequence-sphinxdoc, python3-all, python3-asteval (>= 0.9.21), python3-ipython, python3-numpy, python3-pandas, python3-pytest, python3-pytest-cov, python3-scipy, python3-setuptools, python3-sphinx, python3-sphinx-gallery, python3-sympy, python3-uncertainties dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18148 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-numpy3; however: Package dh-sequence-numpy3 is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-sphinxdoc; however: Package dh-sequence-sphinxdoc is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-asteval (>= 0.9.21); however: Package python3-asteval is not installed. pbuilder-satisfydepends-dummy depends on python3-ipython; however: Package python3-ipython is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however: Package python3-pytest-cov is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-gallery; however: Package python3-sphinx-gallery is not installed. pbuilder-satisfydepends-dummy depends on python3-sympy; however: Package python3-sympy is not installed. pbuilder-satisfydepends-dummy depends on python3-uncertainties; however: Package python3-uncertainties is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libopenjp2-7{a} libpipeline1{a} libpng16-16{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8{a} libsub-override-perl{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxsimd-dev{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} openssl{a} po-debconf{a} pybuild-plugin-pyproject{a} python-babel-localedata{a} python-matplotlib-data{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-asteval{a} python3-asttokens{a} python3-attr{a} python3-babel{a} python3-backcall{a} python3-beniget{a} python3-brotli{a} python3-build{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-coverage{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-docutils{a} python3-executing{a} python3-fonttools{a} python3-fs{a} python3-future{a} python3-gast{a} python3-idna{a} python3-imagesize{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-installer{a} python3-ipython{a} python3-jedi{a} python3-jinja2{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-matplotlib-inline{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-parso{a} python3-pep517{a} python3-pexpect{a} python3-pickleshare{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-ply{a} python3-prompt-toolkit{a} python3-ptyprocess{a} python3-pure-eval{a} python3-py{a} python3-pygments{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-cov{a} python3-pythran{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sphinx-gallery{a} python3-stack-data{a} python3-sympy{a} python3-tk{a} python3-toml{a} python3-tomli{a} python3-traitlets{a} python3-tz{a} python3-ufolib2{a} python3-uncertainties{a} python3-urllib3{a} python3-wcwidth{a} python3-wheel{a} python3-zipp{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx optipng python3-bottleneck python3-bs4 python3-html5lib python3-numba python3-numexpr python3-odf python3-olefile python3-openpyxl python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 209 newly installed, 0 to remove and 0 not upgraded. Need to get 140 MB of archives. After unpacking 758 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 13 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 tzdata all 2023c-5+deb12u1 [296 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.11-1~deb12u2 [1419 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [1035 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2+deb12u2 [760 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libtk8.6 amd64 8.6.13-2 [781 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 59 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130+deb12u1 [104 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 docutils-common all 0.19+dfsg-6 [127 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 fonts-lyx all 2.3.7-1 [186 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-21 [9508 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get: 78 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B] Get: 89 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-metadata all 12-4 [6532 B] Get: 90 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-3 [184 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 96 http://deb.debian.org/debian bookworm/main amd64 libopenblas0-pthread amd64 0.3.21+ds-4 [6709 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get: 98 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [28.9 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get: 100 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 libopenblas0 amd64 0.3.21+ds-4 [32.6 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 libopenblas-pthread-dev amd64 0.3.21+ds-4 [4971 kB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 libopenblas-dev amd64 0.3.21+ds-4 [44.9 kB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-2 [189 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get: 108 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get: 109 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get: 110 http://deb.debian.org/debian bookworm/main amd64 libqhull-r8.0 amd64 2020.2-5 [248 kB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4.1 [10.6 kB] Get: 112 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.2+deb12u1 [286 kB] Get: 113 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-6+deb12u1 [316 kB] Get: 114 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.2+deb12u1 [99.4 kB] Get: 115 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.2+deb12u1 [109 kB] Get: 116 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get: 117 http://deb.debian.org/debian bookworm/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get: 118 http://deb.debian.org/debian bookworm/main amd64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 119 http://deb.debian.org/debian bookworm/main amd64 python3-zipp all 1.0.0-6 [6696 B] Get: 120 http://deb.debian.org/debian bookworm/main amd64 python3-importlib-metadata all 4.12.0-1 [24.9 kB] Get: 121 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get: 122 http://deb.debian.org/debian bookworm/main amd64 python3-tomli all 2.0.1-2 [17.9 kB] Get: 123 http://deb.debian.org/debian bookworm/main amd64 python3-pep517 all 0.13.0-2 [17.4 kB] Get: 124 http://deb.debian.org/debian bookworm/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get: 125 http://deb.debian.org/debian bookworm/main amd64 python3-wheel all 0.38.4-2 [30.8 kB] Get: 126 http://deb.debian.org/debian bookworm/main amd64 python3-build all 0.9.0-1 [20.7 kB] Get: 127 http://deb.debian.org/debian bookworm/main amd64 python3-installer all 0.6.0+dfsg1-1 [18.1 kB] Get: 128 http://deb.debian.org/debian bookworm/main amd64 pybuild-plugin-pyproject all 5.20230130+deb12u1 [9184 B] Get: 129 http://deb.debian.org/debian bookworm/main amd64 python-babel-localedata all 2.10.3-1 [5615 kB] Get: 130 http://deb.debian.org/debian bookworm/main amd64 python-matplotlib-data all 3.6.3-1 [2744 kB] Get: 131 http://deb.debian.org/debian bookworm/main amd64 python3-alabaster all 0.7.12-1 [20.8 kB] Get: 132 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get: 133 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get: 134 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get: 135 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get: 136 http://deb.debian.org/debian bookworm/main amd64 python3-appdirs all 1.4.4-3 [13.0 kB] Get: 137 http://deb.debian.org/debian bookworm/main amd64 python3-asteval all 0.9.28-1 [18.4 kB] Get: 138 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get: 139 http://deb.debian.org/debian bookworm/main amd64 python3-asttokens all 2.2.1-1 [19.8 kB] Get: 140 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get: 141 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 142 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7.1-4 [30.1 kB] Get: 143 http://deb.debian.org/debian bookworm/main amd64 python3-babel all 2.10.3-1 [103 kB] Get: 144 http://deb.debian.org/debian bookworm/main amd64 python3-backcall all 0.2.0-4 [12.1 kB] Get: 145 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get: 146 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get: 147 http://deb.debian.org/debian bookworm/main amd64 python3-brotli amd64 1.0.9-2+b6 [281 kB] Get: 148 http://deb.debian.org/debian bookworm/main amd64 python3-certifi all 2022.9.24-1 [153 kB] Get: 149 http://deb.debian.org/debian bookworm/main amd64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get: 150 http://deb.debian.org/debian bookworm/main amd64 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get: 151 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get: 152 http://deb.debian.org/debian bookworm/main amd64 python3-contourpy amd64 1.0.7-1+b1 [176 kB] Get: 153 http://deb.debian.org/debian bookworm/main amd64 python3-coverage amd64 6.5.0+dfsg1-2+b1 [153 kB] Get: 154 http://deb.debian.org/debian bookworm/main amd64 python3-cycler all 0.11.0-1 [8020 B] Get: 155 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-2 [78.3 kB] Get: 156 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get: 157 http://deb.debian.org/debian bookworm/main amd64 python3-roman all 3.3-3 [9880 B] Get: 158 http://deb.debian.org/debian bookworm/main amd64 python3-docutils all 0.19+dfsg-6 [382 kB] Get: 159 http://deb.debian.org/debian bookworm/main amd64 python3-executing all 1.2.0-2 [22.6 kB] Get: 160 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get: 161 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get: 162 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.10.1-2 [15.2 MB] Get: 163 http://deb.debian.org/debian bookworm/main amd64 python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get: 164 http://deb.debian.org/debian bookworm/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get: 165 http://deb.debian.org/debian bookworm/main amd64 python3-sympy all 1.11.1-1 [4358 kB] Get: 166 http://deb.debian.org/debian bookworm/main amd64 python3-fs all 2.4.16-2 [95.2 kB] Get: 167 http://deb.debian.org/debian bookworm/main amd64 python3-lxml amd64 4.9.2-1+b1 [1194 kB] Get: 168 http://deb.debian.org/debian bookworm/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b2 [25.0 kB] Get: 169 http://deb.debian.org/debian bookworm/main amd64 unicode-data all 15.0.0-1 [7984 kB] Get: 170 http://deb.debian.org/debian bookworm/main amd64 python3-fonttools amd64 4.38.0-1+b1 [1012 kB] Get: 171 http://deb.debian.org/debian bookworm/main amd64 python3-future all 0.18.2-6 [348 kB] Get: 172 http://deb.debian.org/debian bookworm/main amd64 python3-idna all 3.3-1 [39.4 kB] Get: 173 http://deb.debian.org/debian bookworm/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 174 http://deb.debian.org/debian bookworm/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 175 http://deb.debian.org/debian bookworm/main amd64 python3-parso all 0.8.3-1 [67.4 kB] Get: 176 http://deb.debian.org/debian bookworm/main amd64 python3-jedi all 0.18.2-1 [689 kB] Get: 177 http://deb.debian.org/debian bookworm/main amd64 python3-traitlets all 5.5.0-1 [92.4 kB] Get: 178 http://deb.debian.org/debian bookworm/main amd64 python3-matplotlib-inline all 0.1.6-2 [8652 B] Get: 179 http://deb.debian.org/debian bookworm/main amd64 python3-ptyprocess all 0.7.0-5 [14.7 kB] Get: 180 http://deb.debian.org/debian bookworm/main amd64 python3-pexpect all 4.8.0-4 [52.9 kB] Get: 181 http://deb.debian.org/debian bookworm/main amd64 python3-pickleshare all 0.7.5-5 [7600 B] Get: 182 http://deb.debian.org/debian bookworm/main amd64 python3-wcwidth all 0.2.5+dfsg1-1.1 [21.4 kB] Get: 183 http://deb.debian.org/debian bookworm/main amd64 python3-prompt-toolkit all 3.0.36-2 [276 kB] Get: 184 http://deb.debian.org/debian bookworm/main amd64 python3-pygments all 2.14.0+dfsg-1 [783 kB] Get: 185 http://deb.debian.org/debian bookworm/main amd64 python3-pure-eval all 0.2.2-1 [11.2 kB] Get: 186 http://deb.debian.org/debian bookworm/main amd64 python3-stack-data all 0.6.2-3 [21.8 kB] Get: 187 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Get: 188 http://deb.debian.org/debian bookworm/main amd64 python3-ipython all 8.5.0-4 [517 kB] Get: 189 http://deb.debian.org/debian bookworm/main amd64 python3-markupsafe amd64 2.1.2-1+b1 [13.2 kB] Get: 190 http://deb.debian.org/debian bookworm/main amd64 python3-jinja2 all 3.1.2-1 [119 kB] Get: 191 http://deb.debian.org/debian bookworm/main amd64 python3-kiwisolver amd64 1.4.4-1+b1 [60.1 kB] Get: 192 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.4.0-1.1+b1 [472 kB] Get: 193 http://deb.debian.org/debian bookworm/main amd64 python3-tk amd64 3.11.2-3 [98.3 kB] Get: 194 http://deb.debian.org/debian bookworm/main amd64 python3-pil.imagetk amd64 9.4.0-1.1+b1 [74.4 kB] Get: 195 http://deb.debian.org/debian bookworm/main amd64 python3-pyparsing all 3.0.9-1 [138 kB] Get: 196 http://deb.debian.org/debian bookworm/main amd64 python3-matplotlib amd64 3.6.3-1+b1 [6921 kB] Get: 197 http://deb.debian.org/debian bookworm/main amd64 python3-pandas-lib amd64 1.5.3+dfsg-2 [3499 kB] Get: 198 http://deb.debian.org/debian bookworm/main amd64 python3-pandas all 1.5.3+dfsg-2 [2885 kB] Get: 199 http://deb.debian.org/debian bookworm/main amd64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 200 http://deb.debian.org/debian bookworm/main amd64 python3-py all 1.11.0-1 [89.2 kB] Get: 201 http://deb.debian.org/debian bookworm/main amd64 python3-pytest all 7.2.1-2 [236 kB] Get: 202 http://deb.debian.org/debian bookworm/main amd64 python3-pytest-cov all 4.0.0-1 [26.1 kB] Get: 203 http://deb.debian.org/debian bookworm/main amd64 python3-urllib3 all 1.26.12-1 [117 kB] Get: 204 http://deb.debian.org/debian bookworm/main amd64 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get: 205 http://deb.debian.org/debian bookworm/main amd64 python3-snowballstemmer all 2.2.0-2 [57.8 kB] Get: 206 http://deb.debian.org/debian bookworm/main amd64 sphinx-common all 5.3.0-4 [653 kB] Get: 207 http://deb.debian.org/debian bookworm/main amd64 python3-sphinx all 5.3.0-4 [549 kB] Get: 208 http://deb.debian.org/debian bookworm/main amd64 python3-sphinx-gallery all 0.10.1-3 [122 kB] Get: 209 http://deb.debian.org/debian bookworm/main amd64 python3-uncertainties all 3.1.6-1 [79.1 kB] Fetched 140 MB in 30s (4624 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libjs-jquery. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18148 files and directories currently installed.) Preparing to unpack .../libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-hotkeys. Preparing to unpack .../libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2.1_all.deb ... Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... 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Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libmagic1:amd64 (1:5.44-3) ... Setting up libdeflate0:amd64 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libqhull-r8.0:amd64 (2020.2-5) ... Setting up file (1:5.44-3) ... Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up python-babel-localedata (2.10.3-1) ... Setting up tzdata (2023c-5+deb12u1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Jan 12 05:58:57 UTC 2024. Universal Time is now: Fri Jan 12 05:58:57 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.0.0-1) ... Setting up libxsimd-dev:amd64 (8.1.0-7) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2) ... Setting up libx11-data (2:1.8.4-2+deb12u2) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up libpng16-16:amd64 (1.6.39-2) ... Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... Setting up autopoint (0.21-12) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:amd64 (1.2.4-0.2+deb12u1) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libtiff6:amd64 (4.5.0-6+deb12u1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libjson-perl (4.10000-1) ... Setting up libopenjp2-7:amd64 (2.5.0-2) ... Setting up libsub-override-perl (0.09-4) ... Setting up sgml-base (1.31) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... Setting up python-matplotlib-data (3.6.3-1) ... Setting up openssl (3.0.11-1~deb12u2) ... Setting up libwebpmux3:amd64 (1.2.4-0.2+deb12u1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libopenblas0-pthread:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libtool (2.4.7-5) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libwebpdemux2:amd64 (1.2.4-0.2+deb12u1) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-5) ... Setting up libjs-jquery-metadata (12-4) ... Setting up libjs-jquery-isonscreen (1.2.0-1.1) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-3) ... Setting up libopenblas0:amd64 (0.3.21+ds-4) ... Setting up groff-base (1.22.4-10) ... Setting up xml-core (0.18+nmu1) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up libfontconfig1:amd64 (2.14.1-4) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libopenblas-dev:amd64 (0.3.21+ds-4) ... Setting up libraqm0:amd64 (0.7.0-4.1) ... Setting up sphinx-common (5.3.0-4) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libxft2:amd64 (2.3.6-1) ... Setting up libpython3.11:amd64 (3.11.2-6) ... Setting up libtk8.6:amd64 (8.6.13-2) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-markupsafe (2.1.2-1+b1) ... Setting up python3-tz (2022.7.1-4) ... Setting up python3-six (1.16.0-4) ... Setting up python3-roman (3.3-3) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-jinja2 (3.1.2-1) ... Setting up python3-packaging (23.0-1) ... Setting up python3-wcwidth (0.2.5+dfsg1-1.1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-snowballstemmer (2.2.0-2) ... Setting up libpython3.11-dev:amd64 (3.11.2-6) ... Setting up python3-brotli (1.0.9-2+b6) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-kiwisolver (1.4.4-1+b1) ... Setting up python3-idna (3.3-1) ... Setting up python3-pickleshare (0.7.5-5) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-installer (0.6.0+dfsg1-1) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-lxml:amd64 (4.9.2-1+b1) ... Setting up python3-traitlets (5.5.0-1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-appdirs (1.4.4-3) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-ptyprocess (0.7.0-5) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-prompt-toolkit (3.0.36-2) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130+deb12u1) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.11.1-1) ... Setting up python3-attr (22.2.0-1) ... Setting up python3-pure-eval (0.2.2-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-tomli (2.0.1-2) ... Setting up python3-py (1.11.0-1) ... Setting up python3-backcall (0.2.0-4) ... Setting up python3-parso (0.8.3-1) ... Setting up python3-asteval (0.9.28-1) ... Setting up python3-babel (2.10.3-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-lz4 (4.0.2+dfsg-1+b2) ... Setting up python3-asttokens (2.2.1-1) ... Setting up python3.11-dev (3.11.2-6) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-alabaster (0.7.12-1) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-ply (3.11-5) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-coverage (6.5.0+dfsg1-2+b1) ... Setting up python3-tk:amd64 (3.11.2-3) ... Setting up python3-pytest-cov (4.0.0-1) ... Setting up python3-zipp (1.0.0-6) ... Setting up python3-wheel (0.38.4-2) ... Setting up python3-matplotlib-inline (0.1.6-2) ... Setting up python3-fs (2.4.16-2) ... Setting up python3-beniget (0.4.1-3) ... Setting up python3-pygments (2.14.0+dfsg-1) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up python3-executing (1.2.0-2) ... Setting up libpython3-all-dev:amd64 (3.11.2-1+b1) ... Setting up python3-pexpect (4.8.0-4) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-contourpy (1.0.7-1+b1) ... Setting up python3-future (0.18.2-6) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python3-stack-data (0.6.2-3) ... Setting up python3-uncertainties (3.1.6-1) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-importlib-metadata (4.12.0-1) ... Setting up python3-jedi (0.18.2-1) ... Setting up python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Setting up python3-pandas (1.5.3+dfsg-2) ... Setting up python3-pep517 (0.13.0-2) ... Setting up python3-ipython (8.5.0-4) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-build (0.9.0-1) ... Setting up python3-scipy (1.10.1-2) ... Setting up pybuild-plugin-pyproject (5.20230130+deb12u1) ... Setting up python3-pil:amd64 (9.4.0-1.1+b1) ... Setting up python3-pil.imagetk:amd64 (9.4.0-1.1+b1) ... Setting up python3-ufolib2 (0.14.0+dfsg1-1) ... Setting up python3-fonttools (4.38.0-1+b1) ... Setting up python3-matplotlib (3.6.3-1+b1) ... Processing triggers for libc-bin (2.36-9+deb12u3) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.19+dfsg-6) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.19+dfsg-6) ... Setting up python3-sphinx (5.3.0-4) ... Setting up python3-sphinx-gallery (0.10.1-3) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/lmfit-py-1.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lmfit-py_1.1.0-1_source.changes dpkg-buildpackage: info: source package lmfit-py dpkg-buildpackage: info: source version 1.1.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.11 rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-lmfit.substvars debian/python-lmfit-doc.substvars debian/files rm -fr -- debian/python3-lmfit/ debian/tmp/ debian/python-lmfit-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.11 dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p 3.11 I: pybuild plugin_pyproject:107: Building wheel for python3.11 with "build" module I: pybuild base:240: python3.11 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/lmfit-py-1.1.0/.pybuild/cpython3_3.11_lmfit * Building wheel... running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/lmfit copying lmfit/version.py -> build/lib/lmfit copying lmfit/printfuncs.py -> build/lib/lmfit copying lmfit/parameter.py -> build/lib/lmfit copying lmfit/models.py -> build/lib/lmfit copying lmfit/model.py -> build/lib/lmfit copying lmfit/minimizer.py -> build/lib/lmfit copying lmfit/lineshapes.py -> build/lib/lmfit copying lmfit/jsonutils.py -> build/lib/lmfit copying lmfit/confidence.py -> build/lib/lmfit copying lmfit/_ampgo.py -> build/lib/lmfit copying lmfit/__init__.py -> build/lib/lmfit installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/lmfit copying build/lib/lmfit/__init__.py -> build/bdist.linux-x86_64/wheel/lmfit copying build/lib/lmfit/_ampgo.py -> build/bdist.linux-x86_64/wheel/lmfit copying build/lib/lmfit/confidence.py -> build/bdist.linux-x86_64/wheel/lmfit copying build/lib/lmfit/jsonutils.py -> build/bdist.linux-x86_64/wheel/lmfit copying build/lib/lmfit/lineshapes.py -> build/bdist.linux-x86_64/wheel/lmfit copying build/lib/lmfit/minimizer.py -> build/bdist.linux-x86_64/wheel/lmfit copying build/lib/lmfit/model.py -> build/bdist.linux-x86_64/wheel/lmfit copying build/lib/lmfit/models.py -> build/bdist.linux-x86_64/wheel/lmfit copying build/lib/lmfit/parameter.py -> build/bdist.linux-x86_64/wheel/lmfit copying build/lib/lmfit/printfuncs.py -> build/bdist.linux-x86_64/wheel/lmfit copying build/lib/lmfit/version.py -> build/bdist.linux-x86_64/wheel/lmfit running install_egg_info running egg_info writing lmfit.egg-info/PKG-INFO writing dependency_links to lmfit.egg-info/dependency_links.txt writing requirements to lmfit.egg-info/requires.txt writing top-level names to lmfit.egg-info/top_level.txt reading manifest file 'lmfit.egg-info/SOURCES.txt' adding license file 'LICENSE' adding license file 'AUTHORS.txt' writing manifest file 'lmfit.egg-info/SOURCES.txt' Copying lmfit.egg-info to build/bdist.linux-x86_64/wheel/lmfit-0.0.0.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/lmfit-0.0.0.dist-info/WHEEL creating '/build/reproducible-path/lmfit-py-1.1.0/.pybuild/cpython3_3.11_lmfit/.tmp-5bsceepd/lmfit-0.0.0-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'lmfit/__init__.py' adding 'lmfit/_ampgo.py' adding 'lmfit/confidence.py' adding 'lmfit/jsonutils.py' adding 'lmfit/lineshapes.py' adding 'lmfit/minimizer.py' adding 'lmfit/model.py' adding 'lmfit/models.py' adding 'lmfit/parameter.py' adding 'lmfit/printfuncs.py' adding 'lmfit/version.py' adding 'lmfit-0.0.0.dist-info/AUTHORS.txt' adding 'lmfit-0.0.0.dist-info/LICENSE' adding 'lmfit-0.0.0.dist-info/METADATA' adding 'lmfit-0.0.0.dist-info/WHEEL' adding 'lmfit-0.0.0.dist-info/top_level.txt' adding 'lmfit-0.0.0.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built lmfit-0.0.0-py3-none-any.whl I: pybuild plugin_pyproject:119: Unpacking wheel built for python3.11 with "installer" module dh_auto_test -O--buildsystem=pybuild pybuild --test --test-pytest -i python{version} -p 3.11 I: pybuild pybuild:307: cp -r NIST_STRD examples /build/reproducible-path/lmfit-py-1.1.0/.pybuild/cpython3_3.11_lmfit/build I: pybuild base:240: cd /build/reproducible-path/lmfit-py-1.1.0/.pybuild/cpython3_3.11_lmfit/build; python3.11 -m pytest -k 'not speed and not test_model_nan_policy' ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack rootdir: /build/reproducible-path/lmfit-py-1.1.0, configfile: setup.cfg plugins: cov-4.0.0 collected 624 items / 3 deselected / 621 selected tests/test_1variable.py . [ 0%] tests/test_NIST_Strd.py ........................... [ 4%] tests/test_algebraic_constraint.py .... [ 5%] tests/test_ampgo.py ............ [ 7%] tests/test_basicfit.py . [ 7%] tests/test_basinhopping.py ..... [ 8%] tests/test_bounded_jacobian.py .. [ 8%] tests/test_bounds.py . [ 8%] tests/test_brute.py ............ [ 10%] tests/test_builtin_models.py ....... [ 11%] tests/test_confidence.py ............. [ 13%] tests/test_covariance_matrix.py ..ssssssss. [ 15%] tests/test_custom_independentvar.py . [ 15%] tests/test_default_kws.py . [ 15%] tests/test_dual_annealing.py ... [ 16%] tests/test_itercb.py ............x..x.... [ 19%] tests/test_jsonutils.py ................. [ 22%] tests/test_least_squares.py ..... [ 23%] tests/test_lineshapes.py ............................................... [ 30%] ........................................... [ 37%] tests/test_max_nfev.py ........................... [ 41%] tests/test_minimizer.py . [ 42%] tests/test_model.py .................................................... [ 50%] .......................................................................s [ 61%] ....s.......................................... [ 69%] tests/test_model_saveload.py .s.s................ [ 72%] tests/test_model_uncertainties.py ..... [ 73%] tests/test_models.py ....... [ 74%] tests/test_multidatasets.py . [ 74%] tests/test_nose.py ................s........ [ 78%] tests/test_pandas.py .. [ 79%] tests/test_parameter.py ................................................ [ 86%] .......... [ 88%] tests/test_parameters.py ............................. [ 93%] tests/test_printfuncs.py ..........................s...... [ 98%] tests/test_shgo.py ....... [ 99%] tests/test_stepmodel.py .. [100%] =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/asteval/astutils.py:182 /usr/lib/python3/dist-packages/asteval/astutils.py:182: DeprecationWarning: `np.uint0` is a deprecated alias for `np.uintp`. (Deprecated NumPy 1.24) FROM_NUMPY = tuple(sym for sym in FROM_NUMPY if hasattr(numpy, sym)) ../../../../../../usr/lib/python3/dist-packages/asteval/astutils.py:182 /usr/lib/python3/dist-packages/asteval/astutils.py:182: DeprecationWarning: `np.int0` is a deprecated alias for `np.intp`. (Deprecated NumPy 1.24) FROM_NUMPY = tuple(sym for sym in FROM_NUMPY if hasattr(numpy, sym)) ../../../../../../usr/lib/python3/dist-packages/asteval/astutils.py:187 /usr/lib/python3/dist-packages/asteval/astutils.py:187: DeprecationWarning: `np.uint0` is a deprecated alias for `np.uintp`. (Deprecated NumPy 1.24) NUMPY_TABLE[sym] = getattr(numpy, sym) ../../../../../../usr/lib/python3/dist-packages/asteval/astutils.py:187 /usr/lib/python3/dist-packages/asteval/astutils.py:187: DeprecationWarning: `np.int0` is a deprecated alias for `np.intp`. (Deprecated NumPy 1.24) NUMPY_TABLE[sym] = getattr(numpy, sym) ../../../../../../usr/lib/python3/dist-packages/past/builtins/misc.py:45 /usr/lib/python3/dist-packages/past/builtins/misc.py:45: DeprecationWarning: the imp module is deprecated in favour of importlib and slated for removal in Python 3.12; see the module's documentation for alternative uses from imp import reload tests/test_manypeaks_speed.py:15 /build/reproducible-path/lmfit-py-1.1.0/.pybuild/cpython3_3.11_lmfit/build/tests/test_manypeaks_speed.py:15: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.flaky(max_runs=5) .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_bounds_length /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_custom_pool /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_float /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_init_with_chain /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_method_kwarg /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_ntemps /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_output /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_partial_bounds /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_reuse_sampler /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_seed /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_scalar_minimizers /build/reproducible-path/lmfit-py-1.1.0/.pybuild/cpython3_3.11_lmfit/build/lmfit/minimizer.py:1029: DeprecationWarning: 'maxiter' has been deprecated in favor of 'maxfun' and will be removed in SciPy 1.11.0. ret = scipy_minimize(self.penalty, variables, **fmin_kws) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ---------- coverage: platform linux, python 3.11.2-final-0 ----------- Coverage HTML written to dir htmlcov = 605 passed, 14 skipped, 3 deselected, 2 xfailed, 18 warnings in 2720.64s (0:45:20) = I: pybuild pybuild:333: rm -fr /build/reproducible-path/lmfit-py-1.1.0/.pybuild/cpython3_3.11_lmfit/build/NIST_STRD /build/reproducible-path/lmfit-py-1.1.0/.pybuild/cpython3_3.11_lmfit/build/examples; find /build/reproducible-path/lmfit-py-1.1.0/.pybuild/cpython3_3.11_lmfit/build -name "*.sav" -delete rm -fr -- /tmp/dh-xdg-rundir-_FSrDXxY create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-lmfit.substvars debian/python-lmfit-doc.substvars rm -fr -- debian/.debhelper/generated/python3-lmfit/ debian/python3-lmfit/ debian/tmp/ debian/.debhelper/generated/python-lmfit-doc/ debian/python-lmfit-doc/ dh_auto_install -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/lmfit-py-1.1.0/debian/tmp pybuild --install -i python{version} -p 3.11 --dest-dir /build/reproducible-path/lmfit-py-1.1.0/debian/tmp I: pybuild plugin_pyproject:161: Copying package built for python3.11 to destdir debian/rules override_dh_installdocs-indep make[1]: Entering directory '/build/reproducible-path/lmfit-py-1.1.0' mv examples/example_emcee_Model_interface.py examples/nodoc_example_emcee_Model_interface.py cp doc/sphinx/ext_mathjax.py doc/extensions.py PYTHONPATH=. http_proxy='localhost' python3 -m sphinx -N -bhtml -D mathjax_path="/usr/share/javascript/mathjax/MathJax.js" doc/ .pybuild/html # HTML generator Running Sphinx v5.3.0 Matplotlib created a temporary config/cache directory at /tmp/matplotlib-du9upv1q because the default path (/nonexistent/first-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://numpy.org/doc/stable/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) loading intersphinx inventory from https://matplotlib.org/stable/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) loading intersphinx inventory from https://matplotlib.org/stable/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) loading intersphinx inventory from https://pandas.pydata.org/pandas-docs/stable/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://pandas.pydata.org/pandas-docs/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='pandas.pydata.org', port=443): Max retries exceeded with url: /pandas-docs/stable/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) loading intersphinx inventory from https://docs.sympy.org/latest/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.sympy.org/latest/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.sympy.org', port=443): Max retries exceeded with url: /latest/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) generating gallery... Matplotlib is building the font cache; this may take a moment. Using Sphinx-Gallery to convert rst text blocks to markdown for .ipynb files. generating gallery for examples... [ 5%] example_use_pandas.py generating gallery for examples... [ 11%] example_expression_model.py generating gallery for examples... [ 16%] example_fit_with_inequality.py generating gallery for examples... [ 22%] example_diffev.py generating gallery for examples... [ 27%] example_fit_with_bounds.py generating gallery for examples... [ 33%] example_reduce_fcn.py generating gallery for examples... [ 38%] example_sympy.py generating gallery for examples... [ 44%] example_fit_with_algebraic_constraint.py generating gallery for examples... [ 50%] example_fit_multi_datasets.py generating gallery for examples... [ 55%] example_Model_interface.py generating gallery for examples... [ 61%] example_fit_with_derivfunc.py generating gallery for examples... [ 66%] example_detect_outliers.py generating gallery for examples... [ 72%] nodoc_example_emcee_Model_interface.py generating gallery for examples... [ 77%] example_complex_resonator_model.py generating gallery for examples... [ 83%] lmfit_emcee_model_selection.py generating gallery for examples... [ 88%] example_confidence_interval.py generating gallery for examples... [ 94%] example_two_dimensional_peak.py generating gallery for examples... [100%] example_brute.py computation time summary: - ../examples/example_brute.py: 686.71 sec 0.0 MB - ../examples/example_confidence_interval.py: 476.65 sec 0.0 MB - ../examples/example_two_dimensional_peak.py: 63.38 sec 0.0 MB - ../examples/example_detect_outliers.py: 32.22 sec 0.0 MB - ../examples/example_complex_resonator_model.py: 25.05 sec 0.0 MB - ../examples/example_diffev.py: 23.28 sec 0.0 MB - ../examples/example_use_pandas.py: 10.42 sec 0.0 MB - ../examples/example_reduce_fcn.py: 10.10 sec 0.0 MB - ../examples/example_fit_with_inequality.py: 9.26 sec 0.0 MB - ../examples/example_expression_model.py: 8.93 sec 0.0 MB - ../examples/example_fit_with_bounds.py: 6.73 sec 0.0 MB - ../examples/example_Model_interface.py: 6.07 sec 0.0 MB - ../examples/example_sympy.py: 5.65 sec 0.0 MB - ../examples/example_fit_with_derivfunc.py: 3.86 sec 0.0 MB - ../examples/example_fit_multi_datasets.py: 1.27 sec 0.0 MB - ../examples/example_fit_with_algebraic_constraint.py: 1.21 sec 0.0 MB - ../examples/lmfit_emcee_model_selection.py: 0.00 sec 0.0 MB - ../examples/nodoc_example_emcee_Model_interface.py: 0.00 sec 0.0 MB building [mo]: targets for 0 po files that are out of date building [html]: targets for 14 source files that are out of date updating environment: [new config] 34 added, 0 changed, 0 removed reading sources... [ 2%] bounds reading sources... [ 5%] builtin_models reading sources... [ 8%] confidence reading sources... [ 11%] constraints reading sources... [ 14%] contents reading sources... [ 17%] examples/example_Model_interface reading sources... [ 20%] examples/example_brute reading sources... [ 23%] examples/example_complex_resonator_model reading sources... [ 26%] examples/example_confidence_interval reading sources... [ 29%] examples/example_detect_outliers reading sources... [ 32%] examples/example_diffev reading sources... [ 35%] examples/example_expression_model reading sources... [ 38%] examples/example_fit_multi_datasets reading sources... [ 41%] examples/example_fit_with_algebraic_constraint reading sources... [ 44%] examples/example_fit_with_bounds reading sources... [ 47%] examples/example_fit_with_derivfunc reading sources... [ 50%] examples/example_fit_with_inequality reading sources... [ 52%] examples/example_reduce_fcn reading sources... [ 55%] examples/example_sympy reading sources... [ 58%] examples/example_two_dimensional_peak reading sources... [ 61%] examples/example_use_pandas reading sources... [ 64%] examples/index reading sources... [ 67%] examples/lmfit_emcee_model_selection reading sources... [ 70%] examples/nodoc_example_emcee_Model_interface reading sources... [ 73%] examples/sg_execution_times reading sources... [ 76%] faq reading sources... [ 79%] fitting reading sources... [ 82%] index reading sources... [ 85%] installation reading sources... [ 88%] intro reading sources... [ 91%] model reading sources... [ 94%] parameters reading sources... [ 97%] support reading sources... [100%] whatsnew /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:27: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: from lmfit.models import LinearModel, LorentzianModel peak = LorentzianModel() background = LinearModel() model = peak + background /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:289: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit.models import ExpressionModel mod = ExpressionModel('off + amp * exp(-x/x0) * sin(x*phase)') /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:303: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, linspace, sin x = linspace(0, 10, 501) params = mod.make_params(off=0.25, amp=1.0, x0=2.0, phase=0.04) y = mod.eval(params, x=x) /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:324: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: script = """ def mycurve(x, amp, cen, sig): loren = lorentzian(x, amplitude=amp, center=cen, sigma=sig) gauss = gaussian(x, amplitude=amp, center=cen, sigma=sig) return log(loren) * gradient(gauss) / gradient(x) """ /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:335: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = ExpressionModel('mycurve(x, height, mid, wid)', init_script=script, independent_vars=['x']) /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:354: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: from numpy import loadtxt from lmfit.models import GaussianModel data = loadtxt('test_peak.dat') x = data[:, 0] y = data[:, 1] mod = GaussianModel() pars = mod.guess(y, x=x) out = mod.fit(y, pars, x=x) print(out.fit_report(min_correl=0.25)) /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:374: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report(min_correl=0.25)) /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:385: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import matplotlib as mpl mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' import matplotlib.pyplot as plt plt.plot(x, y, '-') plt.plot(x, out.best_fit, '-', label='Gaussian Model') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:406: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit.models import LorentzianModel mod = LorentzianModel() /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:414: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: pars = mod.guess(y, x=x) out = mod.fit(y, pars, x=x) print(out.fit_report(min_correl=0.25)) /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:423: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, '-') plt.plot(x, out.best_fit, '-', label='Lorentzian Model') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:434: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit.models import VoigtModel mod = VoigtModel() /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:441: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: pars = mod.guess(y, x=x) out = mod.fit(y, pars, x=x) print(out.fit_report(min_correl=0.25)) /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:452: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y, '-') axes[0].plot(x, out.best_fit, '-', label='Voigt Model\ngamma constrained') axes[0].legend() # free gamma parameter pars['gamma'].set(value=0.7, vary=True, expr='') out_gamma = mod.fit(y, pars, x=x) axes[1].plot(x, y, '-') axes[1].plot(x, out_gamma.best_fit, '-', label='Voigt Model\ngamma unconstrained') axes[1].legend() plt.show() /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:483: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out_gamma.fit_report(min_correl=0.25)) /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:520: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_builtinmodels_stepmodel.py :hide-output: /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:531: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report()) /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:538: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y) plt.plot(x, out.init_fit, '--', label='initial fit') plt.plot(x, out.best_fit, '-', label='best fit') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:561: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_builtinmodels_nistgauss.py :hide-output: /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:577: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report()) /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:588: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y) axes[0].plot(x, init, '--', label='initial fit') axes[0].plot(x, out.best_fit, '-', label='best fit') axes[0].legend() comps = out.eval_components(x=x) axes[1].plot(x, y) axes[1].plot(x, comps['g1_'], '--', label='Gaussian component 1') axes[1].plot(x, comps['g2_'], '--', label='Gaussian component 2') axes[1].plot(x, comps['exp_'], '--', label='Exponential component') axes[1].legend() plt.show() /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:629: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_builtinmodels_nistgauss2.py :hide-code: :hide-output: /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:635: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y) plt.plot(x, out.init_fit, '--', label='initial fit') plt.plot(x, out.best_fit, '-', label='best fit') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:649: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report()) /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:686: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: import numpy as np import matplotlib.pyplot as plt from lmfit.models import SplineModel, GaussianModel data = np.loadtxt('test_splinepeak.dat') x = data[:, 0] y = data[:, 1] plt.plot(x, y, label='data') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:703: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, label='data') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:714: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: model = GaussianModel(prefix='peak_') params = model.make_params(amplitude=8, center=16, sigma=1) /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:728: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: knot_xvals = np.array([1, 3, 5, 7, 9, 11, 13, 19, 21, 23, 25]) bkg = SplineModel(prefix='bkg_', xknots=knot_xvals) params.update(bkg.guess(y, x)) /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:748: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: model = model + bkg params['peak_amplitude'].min = 0 params['peak_center'].min = 10 params['peak_center'].max = 20 out = model.fit(y, params, x=x) print(out.fit_report(min_correl=0.3)) /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:767: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report(min_correl=0.3)) /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:783: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: comps = out.eval_components() plt.plot(x, out.best_fit, label='best fit') plt.plot(x, comps['bkg_'], label='background') plt.plot(x, comps['peak_'], label='peak') plt.legend() /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:794: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, label='data') plt.plot(x, out.best_fit, label='best fit') plt.plot(x, comps['bkg_'], label='background') plt.plot(x, comps['peak_'], label='peak') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:807: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: knot_yvals = np.array([o.value for o in out.params.values() if o.name.startswith('bkg')]) plt.plot(knot_xvals, knot_yvals, 'o', color='black', label='spline knots values') /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:815: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, label='data') plt.plot(x, out.best_fit, label='best fit') plt.plot(x, comps['bkg_'], label='background') plt.plot(x, comps['peak_'], label='peak') knot_yvals = np.array([o.value for o in out.params.values() if o.name.startswith('bkg')]) plt.plot(knot_xvals, knot_yvals, 'o', color='black', label='spline knots values') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:833: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: knot_xvals1 = np.array([1, 3, 5, 7, 9, 11, 13, 19, 21, 23, 25]) knot_xvals2 = np.array([1, 3, 5, 7, 9, 11, 13, 16, 19, 21, 23, 25]) knot_xvals3 = np.array([1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 25]) /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:874: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: plt.plot(x, y, 'o', label='data') for nknots in (10, 15, 20, 25): model = SplineModel(prefix='bkg_', xknots=np.linspace(0, 25, nknots)) params = model.guess(y, x) out = model.fit(y, params, x=x) plt.plot(x, out.best_fit, label=f'best-fit ({nknots} knots)') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.1.0/doc/builtin_models.rst:891: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, 'o', label='data') for nknots in (10, 15, 20, 25): model = SplineModel(prefix='bkg_', xknots=np.linspace(0, 25, nknots)) params = model.guess(y, x) out = model.fit(y, params, x=x) plt.plot(x, out.best_fit, label=f'best-fit ({nknots} knots)') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.1.0/doc/confidence.rst:45: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np import lmfit x = np.linspace(0.3, 10, 100) np.random.seed(0) y = 1/(0.1*x) + 2 + 0.1*np.random.randn(x.size) pars = lmfit.Parameters() pars.add_many(('a', 0.1), ('b', 1)) def residual(p): return 1/(p['a']*x) + p['b'] - y /build/reproducible-path/lmfit-py-1.1.0/doc/confidence.rst:66: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mini = lmfit.Minimizer(residual, pars) result = mini.minimize() print(lmfit.fit_report(result.params)) /build/reproducible-path/lmfit-py-1.1.0/doc/confidence.rst:76: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ci = lmfit.conf_interval(mini, result) lmfit.printfuncs.report_ci(ci) /build/reproducible-path/lmfit-py-1.1.0/doc/confidence.rst:103: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: for p in result.params: result.params[p].stderr = abs(result.params[p].value * 0.1) /build/reproducible-path/lmfit-py-1.1.0/doc/confidence.rst:124: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import warnings warnings.filterwarnings(action="ignore") import matplotlib as mpl import matplotlib.pyplot as plt mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' /build/reproducible-path/lmfit-py-1.1.0/doc/confidence.rst:135: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_confidence_advanced.py :hide-output: /build/reproducible-path/lmfit-py-1.1.0/doc/confidence.rst:140: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: lmfit.report_fit(out2.params, min_correl=0.5) print('') lmfit.printfuncs.report_ci(ci) /build/reproducible-path/lmfit-py-1.1.0/doc/confidence.rst:157: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) cx, cy, grid = lmfit.conf_interval2d(mini, out2, 'a1', 't2', 30, 30) ctp = axes[0].contourf(cx, cy, grid, np.linspace(0, 1, 11)) fig.colorbar(ctp, ax=axes[0]) axes[0].set_xlabel('a1') axes[0].set_ylabel('t2') cx, cy, grid = lmfit.conf_interval2d(mini, out2, 'a2', 't2', 30, 30) ctp = axes[1].contourf(cx, cy, grid, np.linspace(0, 1, 11)) fig.colorbar(ctp, ax=axes[1]) axes[1].set_xlabel('a2') axes[1].set_ylabel('t2') plt.show() /build/reproducible-path/lmfit-py-1.1.0/doc/confidence.rst:191: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) cx1, cy1, prob = trace['a1']['a1'], trace['a1']['t2'], trace['a1']['prob'] cx2, cy2, prob2 = trace['t2']['t2'], trace['t2']['a1'], trace['t2']['prob'] axes[0].scatter(cx1, cy1, c=prob, s=30) axes[0].set_xlabel('a1') axes[0].set_ylabel('t2') axes[1].scatter(cx2, cy2, c=prob2, s=30) axes[1].set_xlabel('t2') axes[1].set_ylabel('a1') plt.show() /build/reproducible-path/lmfit-py-1.1.0/doc/confidence.rst:210: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) cx1, cy1, prob = trace['a1']['a1'], trace['a1']['t2'], trace['a1']['prob'] cx2, cy2, prob2 = trace['t2']['t2'], trace['t2']['a1'], trace['t2']['prob'] axes[0].scatter(cx1, cy1, c=prob, s=30) axes[0].set_xlabel('a1') axes[0].set_ylabel('t2') axes[1].scatter(cx2, cy2, c=prob2, s=30) axes[1].set_xlabel('t2') axes[1].set_ylabel('a1') plt.show() /build/reproducible-path/lmfit-py-1.1.0/doc/constraints.rst:43: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import Parameters pars = Parameters() pars.add('frac_curve1', value=0.5, min=0, max=1) pars.add('frac_curve2', expr='1-frac_curve1') /build/reproducible-path/lmfit-py-1.1.0/doc/constraints.rst:85: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars = Parameters() pars.add('amp_1', value=0.5, min=0, max=1) pars.add('cen_1', value=2.2) pars.add('wid_1', value=0.2) /build/reproducible-path/lmfit-py-1.1.0/doc/constraints.rst:94: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars.add('amp_2', expr='(2.0 - amp_1**2)') pars.add('wid_2', expr='sqrt(pi)*wid_1') pars.add('cen_2', expr='cen_1 * wid_2 / max(wid_1, 0.001)') /build/reproducible-path/lmfit-py-1.1.0/doc/constraints.rst:103: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars.add('param_a', value=1) pars.add('param_b', value=2) pars.add('test_val', value=100) pars.add('bounded', expr='param_a if test_val/2. > 100 else param_b') /build/reproducible-path/lmfit-py-1.1.0/doc/constraints.rst:113: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: if pars['test_val'].value/2. > 100: bounded = pars['param_a'].value else: bounded = pars['param_b'].value /build/reproducible-path/lmfit-py-1.1.0/doc/constraints.rst:132: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars = Parameters() pars.add('x', value=5, vary=True) pars.add('delta', value=5, max=10, vary=True) pars.add('y', expr='delta-x') /build/reproducible-path/lmfit-py-1.1.0/doc/constraints.rst:175: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def mylorentzian(x, amp, cen, wid): "lorentzian function: wid = half-width at half-max" return (amp / (1 + ((x-cen) / wid)**2)) /build/reproducible-path/lmfit-py-1.1.0/doc/constraints.rst:185: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import Parameters pars = Parameters() pars._asteval.symtable['lorentzian'] = mylorentzian /build/reproducible-path/lmfit-py-1.1.0/doc/constraints.rst:194: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import Minimizer def userfcn(x, params): pass fitter = Minimizer(userfcn, pars) /build/reproducible-path/lmfit-py-1.1.0/doc/constraints.rst:207: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars = Parameters() fitter = Minimizer(userfcn, pars) fitter.params._asteval.symtable['lorentzian'] = mylorentzian /build/reproducible-path/lmfit-py-1.1.0/doc/faq.rst:249: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np import lmfit def quad_off(x, x0, a, b, c): model = a + b * x**2 model[np.where(x < x0)] = c return model x0 = 19 b = 0.02 a = 2.0 xdat = np.linspace(0, 100, 101) ydat = a + b * xdat**2 ydat[np.where(xdat < x0)] = a + b * x0**2 ydat += np.random.normal(scale=0.1, size=xdat.size) mod = lmfit.Model(quad_off) pars = mod.make_params(x0=22, a=1, b=1, c=1) result = mod.fit(ydat, pars, x=xdat) print(result.fit_report()) /build/reproducible-path/lmfit-py-1.1.0/doc/faq.rst:292: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np from scipy.special import erf import lmfit def quad_off(x, x0, a, b, c): m1 = a + b * x**2 m2 = c * np.ones(len(x)) # step up from 0 to 1 at x0: (erf(x-x0)+1)/2 # step down from 1 to 0 at x0: (1-erf(x-x0))/2 model = m1 * (erf(x-x0)+1)/2 + m2 * (1-erf(x-x0))/2 return model x0 = 19 b = 0.02 a = 2.0 xdat = np.linspace(0, 100, 101) ydat = a + b * xdat**2 ydat[np.where(xdat < x0)] = a + b * x0**2 ydat += np.random.normal(scale=0.1, size=xdat.size) mod = lmfit.Model(quad_off) pars = mod.make_params(x0=22, a=1, b=1, c=1) result = mod.fit(ydat, pars, x=xdat) print(result.fit_report()) /build/reproducible-path/lmfit-py-1.1.0/doc/fitting.rst:65: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, sign, sin, pi def residual(pars, x, data=None, eps=None): # unpack parameters: extract .value attribute for each parameter parvals = pars.valuesdict() period = parvals['period'] shift = parvals['shift'] decay = parvals['decay'] if abs(shift) > pi/2: shift = shift - sign(shift)*pi if abs(period) < 1.e-10: period = sign(period)*1.e-10 model = parvals['amp'] * sin(shift + x/period) * exp(-x*x*decay*decay) if data is None: return model if eps is None: return model - data return (model-data) / eps /build/reproducible-path/lmfit-py-1.1.0/doc/fitting.rst:98: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: from lmfit import Parameter, Parameters params = Parameters() /build/reproducible-path/lmfit-py-1.1.0/doc/fitting.rst:105: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: params['period'] = Parameter(name='period', value=2, min=1.e-10) /build/reproducible-path/lmfit-py-1.1.0/doc/fitting.rst:111: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: period = 1 /build/reproducible-path/lmfit-py-1.1.0/doc/fitting.rst:116: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: if abs(period) < 1.e-10: period = sign(period)*1.e-10 /build/reproducible-path/lmfit-py-1.1.0/doc/fitting.rst:433: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_fitting_withreport.py :hide-output: /build/reproducible-path/lmfit-py-1.1.0/doc/fitting.rst:438: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(fit_report(out)) /build/reproducible-path/lmfit-py-1.1.0/doc/fitting.rst:447: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: print('-------------------------------') print('Parameter Value Stderr') for name, param in out.params.items(): print(f'{name:7s} {param.value:11.5f} {param.stderr:11.5f}') /build/reproducible-path/lmfit-py-1.1.0/doc/fitting.rst:555: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import warnings warnings.filterwarnings(action="ignore") import matplotlib as mpl import matplotlib.pyplot as plt mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' /build/reproducible-path/lmfit-py-1.1.0/doc/fitting.rst:568: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import matplotlib.pyplot as plt import numpy as np import lmfit x = np.linspace(1, 10, 250) np.random.seed(0) y = 3.0 * np.exp(-x / 2) - 5.0 * np.exp(-(x - 0.1) / 10.) + 0.1 * np.random.randn(x.size) /build/reproducible-path/lmfit-py-1.1.0/doc/fitting.rst:581: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: p = lmfit.Parameters() p.add_many(('a1', 4.), ('a2', 4.), ('t1', 3.), ('t2', 3., True)) def residual(p): v = p.valuesdict() return v['a1'] * np.exp(-x / v['t1']) + v['a2'] * np.exp(-(x - 0.1) / v['t2']) - y /build/reproducible-path/lmfit-py-1.1.0/doc/fitting.rst:595: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mi = lmfit.minimize(residual, p, method='nelder', nan_policy='omit') lmfit.printfuncs.report_fit(mi.params, min_correl=0.5) /build/reproducible-path/lmfit-py-1.1.0/doc/fitting.rst:602: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: plt.plot(x, y, 'o') plt.plot(x, residual(mi.params) + y, label='best fit') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.1.0/doc/fitting.rst:629: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mi.params.add('__lnsigma', value=np.log(0.1), min=np.log(0.001), max=np.log(2)) /build/reproducible-path/lmfit-py-1.1.0/doc/fitting.rst:636: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: res = lmfit.minimize(residual, method='emcee', nan_policy='omit', burn=300, steps=1000, thin=20, params=mi.params, is_weighted=False, progress=False) /build/reproducible-path/lmfit-py-1.1.0/doc/fitting.rst:655: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: plt.plot(res.acceptance_fraction, 'o') plt.xlabel('walker') plt.ylabel('acceptance fraction') plt.show() /build/reproducible-path/lmfit-py-1.1.0/doc/fitting.rst:665: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import corner emcee_plot = corner.corner(res.flatchain, labels=res.var_names, truths=list(res.params.valuesdict().values())) /build/reproducible-path/lmfit-py-1.1.0/doc/fitting.rst:677: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: print('median of posterior probability distribution') print('--------------------------------------------') lmfit.report_fit(res.params) /build/reproducible-path/lmfit-py-1.1.0/doc/fitting.rst:698: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: highest_prob = np.argmax(res.lnprob) hp_loc = np.unravel_index(highest_prob, res.lnprob.shape) mle_soln = res.chain[hp_loc] for i, par in enumerate(p): p[par].value = mle_soln[i] print('\nMaximum Likelihood Estimation from emcee ') print('-------------------------------------------------') print('Parameter MLE Value Median Value Uncertainty') fmt = ' {:5s} {:11.5f} {:11.5f} {:11.5f}'.format for name, param in p.items(): print(fmt(name, param.value, res.params[name].value, res.params[name].stderr)) /build/reproducible-path/lmfit-py-1.1.0/doc/fitting.rst:722: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: print('\nError estimates from emcee:') print('------------------------------------------------------') print('Parameter -2sigma -1sigma median +1sigma +2sigma') for name in p.keys(): quantiles = np.percentile(res.flatchain[name], [2.275, 15.865, 50, 84.135, 97.275]) median = quantiles[2] err_m2 = quantiles[0] - median err_m1 = quantiles[1] - median err_p1 = quantiles[3] - median err_p2 = quantiles[4] - median fmt = ' {:5s} {:8.4f} {:8.4f} {:8.4f} {:8.4f} {:8.4f}'.format print(fmt(name, err_m2, err_m1, median, err_p1, err_p2)) /build/reproducible-path/lmfit-py-1.1.0/doc/intro.rst:43: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, sin def residual(variables, x, data, uncertainty): """Model a decaying sine wave and subtract data.""" amp = variables[0] phaseshift = variables[1] freq = variables[2] decay = variables[3] model = amp * sin(x*freq + phaseshift) * exp(-x*x*decay) return (data-model) / uncertainty /build/reproducible-path/lmfit-py-1.1.0/doc/intro.rst:60: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import linspace, random from scipy.optimize import leastsq # generate synthetic data with noise x = linspace(0, 100) noise = random.normal(size=x.size, scale=0.2) data = 7.5 * sin(x*0.22 + 2.5) * exp(-x*x*0.01) + noise # generate experimental uncertainties uncertainty = abs(0.16 + random.normal(size=x.size, scale=0.05)) variables = [10.0, 0.2, 3.0, 0.007] out = leastsq(residual, variables, args=(x, data, uncertainty)) /build/reproducible-path/lmfit-py-1.1.0/doc/intro.rst:121: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, sin from lmfit import minimize, Parameters def residual(params, x, data, uncertainty): amp = params['amp'] phaseshift = params['phase'] freq = params['frequency'] decay = params['decay'] model = amp * sin(x*freq + phaseshift) * exp(-x*x*decay) return (data-model) / uncertainty params = Parameters() params.add('amp', value=10) params.add('decay', value=0.007) params.add('phase', value=0.2) params.add('frequency', value=3.0) out = minimize(residual, params, args=(x, data, uncertainty)) /build/reproducible-path/lmfit-py-1.1.0/doc/intro.rst:153: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: params = Parameters() params.add('amp', value=10, vary=False) params.add('decay', value=0.007, min=0.0) params.add('phase', value=0.2) params.add('frequency', value=3.0, max=10) /build/reproducible-path/lmfit-py-1.1.0/doc/intro.rst:166: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: params['amp'].vary = False params['decay'].min = 0.10 /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:49: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import matplotlib as mpl mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:57: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, linspace, random def gaussian(x, amp, cen, wid): return amp * exp(-(x-cen)**2 / wid) /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:67: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: from scipy.optimize import curve_fit x = linspace(-10, 10, 101) y = gaussian(x, 2.33, 0.21, 1.51) + random.normal(0, 0.2, x.size) init_vals = [1, 0, 1] # for [amp, cen, wid] best_vals, covar = curve_fit(gaussian, x, y, p0=init_vals) /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:89: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import Model gmodel = Model(gaussian) print(f'parameter names: {gmodel.param_names}') print(f'independent variables: {gmodel.independent_vars}') /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:117: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: params = gmodel.make_params() /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:126: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: params = gmodel.make_params(cen=0.3, amp=3, wid=1.25) /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:140: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: x_eval = linspace(0, 10, 201) y_eval = gmodel.eval(params, x=x_eval) /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:147: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: y_eval = gmodel.eval(x=x_eval, cen=6.5, amp=100, wid=2.0) /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:156: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: result = gmodel.fit(y, params, x=x) /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:162: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: result = gmodel.fit(y, x=x, cen=0.5, amp=10, wid=2.0) /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:169: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_gaussian.py :hide-output: /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:176: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(result.fit_report()) /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:186: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, 'o') plt.plot(x, result.init_fit, '--', label='initial fit') plt.plot(x, result.best_fit, '-', label='best fit') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:200: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: gmodel = Model(gaussian) result = gmodel.fit(y, params, x=x, amp=5, cen=5, wid=1) /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:321: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np from lmfit import Model def decay(t, tau, N): return N*np.exp(-t/tau) decay_model = Model(decay) print(f'independent variables: {decay_model.independent_vars}') params = decay_model.make_params() print('\nParameters:') for pname, par in params.items(): print(pname, par) /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:346: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: decay_model = Model(decay, independent_vars=['tau']) print(f'independent variables: {decay_model.independent_vars}') params = decay_model.make_params() print('\nParameters:') for pname, par in params.items(): print(pname, par) /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:378: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def decay2(t, tau, N=10, check_positive=False): if check_positive: arg = abs(t)/max(1.e-9, abs(tau)) else: arg = t/tau return N*np.exp(arg) mod = Model(decay2) params = mod.make_params() print('Parameters:') for pname, par in params.items(): print(pname, par) /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:414: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def myfunc(x, amplitude=1, center=0, sigma=1): # function definition, for now just ``pass`` pass mod = Model(myfunc, prefix='f1_') params = mod.make_params() print('Parameters:') for pname, par in params.items(): print(pname, par) /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:455: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def myfunc(x, a=1, b=0): return a*x + 10*a - b /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:462: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def myfunc(x, a, b): return a*x + 10*a - b /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:479: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(myfunc) pars = mod.make_params(a=3, b=0.5) /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:495: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(myfunc) mod.set_param_hint('a', value=1.0) mod.set_param_hint('b', value=0.3, min=0, max=1.0) pars = mod.make_params() /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:513: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: x = linspace(0, 10, 100) y_eval = mod.eval(x=x, a=7.0, b=-2.0) y_sim = y_eval + random.normal(0, 0.2, x.size) out = mod.fit(y_sim, pars, x=x, a=3.0, b=0.0) /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:537: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(myfunc) mod.set_param_hint('a', value=1.0) mod.set_param_hint('b', value=0.3, min=0, max=1.0) /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:546: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: print('Parameter hints:') for pname, par in mod.param_hints.items(): print(pname, par) /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:561: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(gaussian) mod.set_param_hint('fwhm', expr='2.3548*sigma') /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:615: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_savemodel.py /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:619: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_loadmodel.py :hide-output: /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:850: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_gaussian.py :hide-output: :hide-code: /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:854: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: dely = result.eval_uncertainty(sigma=3) plt.fill_between(x, result.best_fit-dely, result.best_fit+dely, color="#ABABAB", label='3-$\sigma$ uncertainty band') /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:865: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, 'o') plt.plot(x, result.init_fit, '--', label='initial fit') plt.plot(x, result.best_fit, '-', label='best fit') plt.fill_between(x, result.best_fit-dely, result.best_fit+dely, color="#ABABAB", label='3-$\sigma$ uncertainty band') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:889: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_uncertainty2.py /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:919: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_savemodelresult.py :hide-output: /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:924: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_loadmodelresult.py :hide-output: /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:945: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def gaussian_plus_line(x, amp, cen, wid, slope, intercept): """line + 1-d gaussian""" gauss = (amp / (sqrt(2*pi) * wid)) * exp(-(x-cen)**2 / (2*wid**2)) line = slope*x + intercept return gauss + line /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:956: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(gaussian_plus_line) /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:968: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def line(x, slope, intercept): """a line""" return slope*x + intercept /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:976: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(gaussian) + Model(line) /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:982: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_two_components.py :hide-output: /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:987: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(result.fit_report()) /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:994: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y, 'o') axes[0].plot(x, result.init_fit, '--', label='initial fit') axes[0].plot(x, result.best_fit, '-', label='best fit') axes[0].legend() comps = result.eval_components() axes[1].plot(x, y, 'o') axes[1].plot(x, comps['gaussian'], '--', label='Gaussian component') axes[1].plot(x, comps['line'], '--', label='Line component') axes[1].legend() plt.show() /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:1016: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: comps = result.eval_components() plt.plot(x, y, 'o') plt.plot(x, comps['gaussian'], '--', label='Gaussian component') plt.plot(x, comps['line'], '--', label='Line component') /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:1038: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: xwide = linspace(-5, 25, 3001) predicted = mod.eval(result.params, x=xwide) /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:1055: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: def fcn1(x, a): pass def fcn2(x, b): pass def fcn3(x, c): pass /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:1067: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(fcn1) + Model(fcn2) * Model(fcn3) /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:1081: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np def convolve(dat, kernel): """simple convolution of two arrays""" npts = min(len(dat), len(kernel)) pad = np.ones(npts) tmp = np.concatenate((pad*dat[0], dat, pad*dat[-1])) out = np.convolve(tmp, kernel, mode='valid') noff = int((len(out) - npts) / 2) return (out[noff:])[:npts] /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:1099: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_composite.py :hide-output: /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:1104: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(result.fit_report()) /build/reproducible-path/lmfit-py-1.1.0/doc/model.rst:1111: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y, 'o') axes[0].plot(x, result.init_fit, '--', label='initial fit') axes[0].plot(x, result.best_fit, '-', label='best fit') axes[0].legend() axes[1].plot(x, y, 'o') axes[1].plot(x, 10*comps['jump'], '--', label='Jump component') axes[1].plot(x, 10*comps['gaussian'], '-', label='Gaussian component') axes[1].legend() 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The HTML pages are in .pybuild/html. rm doc/extensions.py mv examples/nodoc_example_emcee_Model_interface.py examples/example_emcee_Model_interface.py dh_installdocs -i install -m0755 -d debian/python3-lmfit/usr/share/doc/python3-lmfit install -p -m0644 debian/copyright debian/python3-lmfit/usr/share/doc/python3-lmfit/copyright install -m0755 -d debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc install -p -m0644 debian/copyright debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc/copyright install -m0755 -d debian/python-lmfit-doc/usr/share/doc-base/ install -p -m0644 debian/python-lmfit-doc.doc-base debian/python-lmfit-doc/usr/share/doc-base/python-lmfit-doc.python-lmfit-doc dh_installdocs .pybuild/html -p python-lmfit-doc --doc-main-package=python3-lmfit install -m0755 -d debian/python-lmfit-doc/usr/share/doc/python3-lmfit cd '.pybuild/html/..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/reproducible-path/lmfit-py-1.1.0/debian/python-lmfit-doc/usr/share/doc/python3-lmfit chmod -R u\+rw,go=rX debian/python-lmfit-doc/usr/share/doc install -p -m0644 debian/copyright debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc/copyright install -m0755 -d debian/python-lmfit-doc/usr/share/doc-base/ install -p -m0644 debian/python-lmfit-doc.doc-base debian/python-lmfit-doc/usr/share/doc-base/python-lmfit-doc.python-lmfit-doc make[1]: Leaving directory '/build/reproducible-path/lmfit-py-1.1.0' dh_sphinxdoc -O--buildsystem=pybuild ln -sf ../../../../javascript/sphinxdoc/1.0/underscore.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/underscore.js ln -sf ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/language_data.js ln -sf ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/searchtools.js ln -sf ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/doctools.js ln -sf ../../../../javascript/sphinxdoc/1.0/jquery.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/jquery.js ln -sf ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/sphinx_highlight.js ln -sf ../../../../javascript/sphinxdoc/1.0/_sphinx_javascript_frameworks_compat.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/_sphinx_javascript_frameworks_compat.js rm -rf debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/.doctrees rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/.buildinfo mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc install -p -m0644 debian/.debhelper/generated/python-lmfit-doc/dh_installchangelogs.dch.trimmed debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc/changelog.Debian install -m0755 -d debian/python3-lmfit/usr/share/doc/python3-lmfit install -p -m0644 debian/.debhelper/generated/python3-lmfit/dh_installchangelogs.dch.trimmed debian/python3-lmfit/usr/share/doc/python3-lmfit/changelog.Debian rm -f debian/python-lmfit-doc.debhelper.log debian/python3-lmfit.debhelper.log debian/rules execute_before_dh_python3 make[1]: Entering directory '/build/reproducible-path/lmfit-py-1.1.0' rm -rf debian/python3-lmfit/usr/lib/python3*/dist-packages/htmlcov debian/python3-lmfit/usr/lib/python3*/dist-packages/.coverage make[1]: Leaving directory '/build/reproducible-path/lmfit-py-1.1.0' dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:179: version: 5.20230130+deb12u1 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:182: supported Python versions: 3.11 (default=3.11) D: dh_python3 debhelper:149: skipping package: python-lmfit-doc D: dh_python3 debhelper:183: source=lmfit-py, binary packages=['python3-lmfit'] D: dh_python3 dh_python3:204: processing package python3-lmfit... D: dh_python3 fs:52: moving files from debian/python3-lmfit/usr/lib/python3.11/dist-packages to debian/python3-lmfit/usr/lib/python3/dist-packages/ D: dh_python3 fs:245: Removing ['LICENSE'] from RECORD in debian/python3-lmfit/usr/lib/python3/dist-packages/lmfit-0.0.0.dist-info D: dh_python3 fs:400: package python3-lmfit details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': {'debian/python3-lmfit/usr/lib/python3/dist-packages/lmfit-0.0.0.dist-info/METADATA'}, 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-lmfit D: dh_python3 pydist:173: trying to find dependency for asteval (>=0.9.28) (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:263: dependency: included in build-deps with limits D: dh_python3 pydist:173: trying to find dependency for numpy (>=1.19) (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for scipy (>=1.6) (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for uncertainties (>=3.1.4) (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for pycairo ; (platform_system == "Windows") and extra == 'all' (python=None) I: dh_python3 pydist:325: Ignoring complex environment marker: pycairo ; (platform_system == "Windows") and extra == 'all' D: dh_python3 pydist:173: trying to find dependency for pycairo ; (platform_system == "Windows") and extra == 'doc' (python=None) I: dh_python3 pydist:325: Ignoring complex environment marker: pycairo ; (platform_system == "Windows") and extra == 'doc' D: dh_python3 depends:281: D={'python3-scipy', 'python3-asteval (>= 0.9.21)', 'python3-uncertainties', 'python3-numpy', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/underscore.js ln -s ../../../../javascript/sphinxdoc/1.0/underscore.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/underscore.js rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/language_data.js ln -s ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/language_data.js rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/searchtools.js ln -s ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/searchtools.js rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/doctools.js ln -s ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/doctools.js rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/jquery.js ln -s ../../../../javascript/sphinxdoc/1.0/jquery.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/jquery.js rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/sphinx_highlight.js ln -s ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/sphinx_highlight.js rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/_sphinx_javascript_frameworks_compat.js ln -s ../../../../javascript/sphinxdoc/1.0/_sphinx_javascript_frameworks_compat.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/_sphinx_javascript_frameworks_compat.js dh_strip_nondeterminism -O--buildsystem=pybuild Using 1672418794 as canonical time Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_reduce_fcn_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_reduce_fcn_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_reduce_fcn_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_inequality_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/headerbg.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/footerbg.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/file.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/broken_example.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/bodybg.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_nodoc_example_emcee_Model_interface_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_003_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_003.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_002_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/relbg.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/plus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/no_image.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/minus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/lmfitheader.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/listitem.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_bounds_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_bounds_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_algebraic_constraint_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_algebraic_constraint_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_algebraic_constraint_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_multi_datasets_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_002_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_lmfit_emcee_model_selection_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_use_pandas_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_use_pandas_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_use_pandas_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_004_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_multi_datasets_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_multi_datasets_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_expression_model_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_expression_model_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_expression_model_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_diffev_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_inequality_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_inequality_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_derivfunc_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_derivfunc_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_derivfunc_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_bounds_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_diffev_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_diffev_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_003_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_003.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_002_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_004.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_003_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_003.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_002_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_003_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_003.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_002_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_004_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_004.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_003_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_003.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_002_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_Model_interface_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_Model_interface_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_Model_interface_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/fb625db3c50d423b1b7881136ffdeec8/examples_jupyter.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/bc82bea3a5dd7bdba60b65220891d9e5/examples_python.zip using File::StripNondeterminism::handlers::zip dh_compress -O--buildsystem=pybuild cd debian/python3-lmfit cd debian/python-lmfit-doc chmod a-x usr/share/doc/python3-lmfit/changelog.Debian gzip -9nf usr/share/doc/python3-lmfit/changelog.Debian chmod a-x usr/share/doc/python-lmfit-doc/changelog.Debian usr/share/doc/python3-lmfit/html/_downloads/2c0316848a8a5e58fdf5c1bd1978018e/example_confidence_interval.ipynb usr/share/doc/python3-lmfit/html/_downloads/3805fc8171e8a0686d5cf65be55085ee/example_complex_resonator_model.py usr/share/doc/python3-lmfit/html/_downloads/3dcc7459227dbd4ba1982949be8491e1/example_complex_resonator_model.ipynb usr/share/doc/python3-lmfit/html/_downloads/6069607ae016c4f4f055d1c8dfd4bfa7/example_sympy.ipynb usr/share/doc/python3-lmfit/html/_downloads/87be2ee5d3294a608face2290f955fe3/example_two_dimensional_peak.py usr/share/doc/python3-lmfit/html/_downloads/8b2fe0a32f4790de5b0465c00682a37b/example_Model_interface.py usr/share/doc/python3-lmfit/html/_downloads/9074bca346e91d4783f1ebfda08595dd/lmfit_emcee_model_selection.ipynb usr/share/doc/python3-lmfit/html/_downloads/9254f2af7eef00978dc5823dc5418985/example_brute.ipynb usr/share/doc/python3-lmfit/html/_downloads/9f726e78b6ffce5b68fd1a615f5db248/nodoc_example_emcee_Model_interface.py usr/share/doc/python3-lmfit/html/_downloads/a48b6f5c2c4202cb67d15a117c5eb6bc/example_fit_with_derivfunc.ipynb usr/share/doc/python3-lmfit/html/_downloads/a4a9bd70fc277eac0b5a505f48c84a99/example_detect_outliers.ipynb usr/share/doc/python3-lmfit/html/_downloads/a69966d88009a9341e88bfe1935158a7/example_Model_interface.ipynb usr/share/doc/python3-lmfit/html/_downloads/b6a243851aa5b1d7362705005c5ed3b1/example_confidence_interval.py usr/share/doc/python3-lmfit/html/_downloads/c004866ac6395edd2609ff96cecdc255/example_brute.py usr/share/doc/python3-lmfit/html/_downloads/c5b1d1ce60f76e20b3312a2697eca7f1/lmfit_emcee_model_selection.py usr/share/doc/python3-lmfit/html/_downloads/e9797dfaa256c029a43c2a364328ed36/example_fit_multi_datasets.ipynb usr/share/doc/python3-lmfit/html/_downloads/ee6bdfefbd3fee18a7b2cb99c291f27e/example_two_dimensional_peak.ipynb usr/share/doc/python3-lmfit/html/_downloads/f64821164b7aa0a9e3cc648c50420867/nodoc_example_emcee_Model_interface.ipynb cd '/build/reproducible-path/lmfit-py-1.1.0' gzip -9nf usr/share/doc/python-lmfit-doc/changelog.Debian usr/share/doc/python3-lmfit/html/_downloads/2c0316848a8a5e58fdf5c1bd1978018e/example_confidence_interval.ipynb usr/share/doc/python3-lmfit/html/_downloads/3805fc8171e8a0686d5cf65be55085ee/example_complex_resonator_model.py usr/share/doc/python3-lmfit/html/_downloads/3dcc7459227dbd4ba1982949be8491e1/example_complex_resonator_model.ipynb usr/share/doc/python3-lmfit/html/_downloads/6069607ae016c4f4f055d1c8dfd4bfa7/example_sympy.ipynb usr/share/doc/python3-lmfit/html/_downloads/87be2ee5d3294a608face2290f955fe3/example_two_dimensional_peak.py usr/share/doc/python3-lmfit/html/_downloads/8b2fe0a32f4790de5b0465c00682a37b/example_Model_interface.py usr/share/doc/python3-lmfit/html/_downloads/9074bca346e91d4783f1ebfda08595dd/lmfit_emcee_model_selection.ipynb usr/share/doc/python3-lmfit/html/_downloads/9254f2af7eef00978dc5823dc5418985/example_brute.ipynb usr/share/doc/python3-lmfit/html/_downloads/9f726e78b6ffce5b68fd1a615f5db248/nodoc_example_emcee_Model_interface.py usr/share/doc/python3-lmfit/html/_downloads/a48b6f5c2c4202cb67d15a117c5eb6bc/example_fit_with_derivfunc.ipynb usr/share/doc/python3-lmfit/html/_downloads/a4a9bd70fc277eac0b5a505f48c84a99/example_detect_outliers.ipynb usr/share/doc/python3-lmfit/html/_downloads/a69966d88009a9341e88bfe1935158a7/example_Model_interface.ipynb usr/share/doc/python3-lmfit/html/_downloads/b6a243851aa5b1d7362705005c5ed3b1/example_confidence_interval.py usr/share/doc/python3-lmfit/html/_downloads/c004866ac6395edd2609ff96cecdc255/example_brute.py usr/share/doc/python3-lmfit/html/_downloads/c5b1d1ce60f76e20b3312a2697eca7f1/lmfit_emcee_model_selection.py usr/share/doc/python3-lmfit/html/_downloads/e9797dfaa256c029a43c2a364328ed36/example_fit_multi_datasets.ipynb usr/share/doc/python3-lmfit/html/_downloads/ee6bdfefbd3fee18a7b2cb99c291f27e/example_two_dimensional_peak.ipynb usr/share/doc/python3-lmfit/html/_downloads/f64821164b7aa0a9e3cc648c50420867/nodoc_example_emcee_Model_interface.ipynb cd '/build/reproducible-path/lmfit-py-1.1.0' dh_fixperms -O--buildsystem=pybuild find debian/python3-lmfit ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-lmfit-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-lmfit/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-lmfit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-lmfit-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-lmfit-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-lmfit/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-lmfit -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-lmfit-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-lmfit/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python-lmfit-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-lmfit/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-lmfit/DEBIAN/postinst cat debian/python3-lmfit.postinst.debhelper >> debian/python3-lmfit/DEBIAN/postinst chmod 0755 -- debian/python3-lmfit/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-lmfit/DEBIAN/prerm cat debian/python3-lmfit.prerm.debhelper >> debian/python3-lmfit/DEBIAN/prerm chmod 0755 -- debian/python3-lmfit/DEBIAN/prerm install -m0755 -d debian/python-lmfit-doc/DEBIAN dh_numpy3 -O--buildsystem=pybuild mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python-lmfit-doc/DEBIAN echo misc:Depends= >> debian/python-lmfit-doc.substvars echo misc:Pre-Depends= >> debian/python-lmfit-doc.substvars dpkg-gencontrol -ppython-lmfit-doc -ldebian/changelog -Tdebian/python-lmfit-doc.substvars -Pdebian/python-lmfit-doc install -m0755 -d debian/python3-lmfit/DEBIAN echo misc:Depends= >> debian/python3-lmfit.substvars echo misc:Pre-Depends= >> debian/python3-lmfit.substvars dpkg-gencontrol -ppython3-lmfit -ldebian/changelog -Tdebian/python3-lmfit.substvars -Pdebian/python3-lmfit chmod 0644 -- debian/python3-lmfit/DEBIAN/control dpkg-gencontrol: warning: package python-lmfit-doc: substitution variable ${python3:Depends} unused, but is defined chmod 0644 -- debian/python-lmfit-doc/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python3-lmfit/DEBIAN cd debian/python3-lmfit >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-lmfit/DEBIAN/md5sums install -m0755 -d debian/python-lmfit-doc/DEBIAN cd debian/python-lmfit-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python-lmfit-doc/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-lmfit .. dpkg-deb --root-owner-group --build debian/python-lmfit-doc .. dpkg-deb: building package 'python3-lmfit' in '../python3-lmfit_1.1.0-1_all.deb'. dpkg-deb: building package 'python-lmfit-doc' in '../python-lmfit-doc_1.1.0-1_all.deb'. dpkg-genbuildinfo --build=binary -O../lmfit-py_1.1.0-1_amd64.buildinfo dpkg-genchanges --build=binary -O../lmfit-py_1.1.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1201596 and its subdirectories I: Current time: Thu Jan 11 19:31:44 -12 2024 I: pbuilder-time-stamp: 1705044704