I: pbuilder: network access will be disabled during build I: Current time: Sat Jan 6 05:23:08 -12 2024 I: pbuilder-time-stamp: 1704561788 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [librostlab_1.0.20-12.dsc] I: copying [./librostlab_1.0.20.orig.tar.gz] I: copying [./librostlab_1.0.20-12.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Apr 25 07:47:21 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./librostlab_1.0.20-12.dsc: no acceptable signature found dpkg-source: info: extracting librostlab in librostlab-1.0.20 dpkg-source: info: unpacking librostlab_1.0.20.orig.tar.gz dpkg-source: info: unpacking librostlab_1.0.20-12.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1488171/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='548f5f8006fc4364b6d0a3eee265c4e0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1488171' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JuN0Fard/pbuilderrc_MqNw --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JuN0Fard/b1 --logfile b1/build.log librostlab_1.0.20-12.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 23 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 23 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 23 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 23 2023 more -rwsr-xr-x 1 root root 59704 Mar 23 2023 mount -rwxr-xr-x 1 root root 18744 Mar 23 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Jul 28 23:46 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 23 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Jul 28 23:46 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 23 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 23 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/1488171/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-linktree, debhelper, doxygen, graphviz, texlive-latex-recommended, texlive-fonts-recommended, texlive-latex-extra, texlive-plain-generic, sphinx-common, d-shlibs dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18148 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-linktree; however: Package dh-linktree is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-plain-generic; however: Package texlive-plain-generic is not installed. pbuilder-satisfydepends-dummy depends on sphinx-common; however: Package sphinx-common is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-linktree{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} intltool-debian{a} libabsl20220623{a} libann0{a} libaom3{a} libapache-pom-java{a} libarchive-zip-perl{a} libavif15{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcdt5{a} libcgraph6{a} libclang-cpp14{a} libclang1-14{a} libcommons-logging-java{a} libcommons-parent-java{a} libdatrie1{a} libdav1d6{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libglib2.0-0{a} libgraphite2-3{a} libgts-0.7-5{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheif1{a} libice6{a} libicu72{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libkpathsea6{a} liblab-gamut1{a} liblerc4{a} libllvm14{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libnuma1{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpathplan4{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libptexenc1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} librav1e0{a} libreadline8{a} libsm6{a} libsub-override-perl{a} libsvtav1enc1{a} libsynctex2{a} libteckit0{a} libtexlua53-5{a} libtexluajit2{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx265-199{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} libyuv0{a} libz3-4{a} libzzip-0-13{a} m4{a} man-db{a} media-types{a} po-debconf{a} preview-latex-style{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sphinx-common{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} texlive-plain-generic{a} ucf{a} x11-common{a} xdg-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl default-jre dvisvgm fonts-liberation2 javascript-common libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libgts-bin libjson-xs-perl libltdl-dev libmail-sendmail-perl libnet-dbus-perl libspreadsheet-parseexcel-perl libx11-protocol-perl lmodern lynx python3-sphinx ruby shared-mime-info tex-gyre tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 148 newly installed, 0 to remove and 0 not upgraded. Need to get 222 MB of archives. After unpacking 818 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 d-shlibs all 0.104 [18.6 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 dh-linktree all 0.9 [11.3 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libz3-4 amd64 4.8.12-3.1 [7216 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libllvm14 amd64 1:14.0.6-12 [21.8 MB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 libclang-cpp14 amd64 1:14.0.6-12 [11.1 MB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libclang1-14 amd64 1:14.0.6-12 [6157 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 doxygen amd64 1.9.4-4 [4611 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 fontconfig amd64 2.14.1-4 [449 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 fonts-lmodern all 2.005-1 [4540 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libcdt5 amd64 2.42.2-7+b3 [39.8 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 libcgraph6 amd64 2.42.2-7+b3 [63.2 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libaom3 amd64 3.6.0-1 [1851 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libdav1d6 amd64 1.0.0-2 [495 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 libabsl20220623 amd64 20220623.1-1 [391 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libgav1-1 amd64 0.18.0-1+b1 [332 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 librav1e0 amd64 0.5.1-6 [763 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 libsvtav1enc1 amd64 1.4.1+dfsg-1 [2121 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 libyuv0 amd64 0.0~git20230123.b2528b0-1 [168 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 libavif15 amd64 0.11.1-1 [93.8 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 libde265-0 amd64 1.0.11-1+deb12u1 [185 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 libx265-199 amd64 3.5-2+b1 [1150 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 libheif1 amd64 1.15.1-1 [215 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.2+deb12u1 [286 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-6+deb12u1 [316 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2+deb12u2 [760 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 libxpm4 amd64 1:3.5.12-1.1+deb12u1 [48.6 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 libgd3 amd64 2.3.3-9 [124 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-5+b1 [160 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 libcairo2 amd64 1.16.0-7 [575 kB] Get: 96 http://deb.debian.org/debian bookworm/main amd64 libltdl7 amd64 2.4.7-5 [393 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get: 98 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get: 100 http://deb.debian.org/debian bookworm/main amd64 libthai-data all 0.1.29-1 [176 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 libdatrie1 amd64 0.2.13-2+b1 [43.3 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 libthai0 amd64 0.1.29-1 [57.5 kB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 libpango-1.0-0 amd64 1.50.12+ds-1 [212 kB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 libpangoft2-1.0-0 amd64 1.50.12+ds-1 [47.4 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 libpangocairo-1.0-0 amd64 1.50.12+ds-1 [34.2 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 libpathplan4 amd64 2.42.2-7+b3 [42.2 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 libgvc6 amd64 2.42.2-7+b3 [678 kB] Get: 108 http://deb.debian.org/debian bookworm/main amd64 libgvpr2 amd64 2.42.2-7+b3 [189 kB] Get: 109 http://deb.debian.org/debian bookworm/main amd64 liblab-gamut1 amd64 2.42.2-7+b3 [198 kB] Get: 110 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get: 112 http://deb.debian.org/debian bookworm/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 113 http://deb.debian.org/debian bookworm/main amd64 libxt6 amd64 1:1.2.1-1.1 [186 kB] Get: 114 http://deb.debian.org/debian bookworm/main amd64 libxmu6 amd64 2:1.1.3-3 [60.1 kB] Get: 115 http://deb.debian.org/debian bookworm/main amd64 libxaw7 amd64 2:1.0.14-1 [201 kB] Get: 116 http://deb.debian.org/debian bookworm/main amd64 graphviz amd64 2.42.2-7+b3 [611 kB] Get: 117 http://deb.debian.org/debian bookworm/main amd64 libapache-pom-java all 29-2 [5276 B] Get: 118 http://deb.debian.org/debian bookworm/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get: 119 http://deb.debian.org/debian bookworm/main amd64 libcommons-logging-java all 1.2-3 [62.4 kB] Get: 120 http://deb.debian.org/debian bookworm/main amd64 libfontbox-java all 1:1.8.16-2 [211 kB] Get: 121 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 122 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 123 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 124 http://deb.debian.org/debian bookworm/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 125 http://deb.debian.org/debian bookworm/main amd64 libkpathsea6 amd64 2022.20220321.62855-5.1+deb12u1 [152 kB] Get: 126 http://deb.debian.org/debian bookworm/main amd64 libpaper1 amd64 1.1.29 [12.5 kB] Get: 127 http://deb.debian.org/debian bookworm/main amd64 libpaper-utils amd64 1.1.29 [8868 B] Get: 128 http://deb.debian.org/debian bookworm/main amd64 libpdfbox-java all 1:1.8.16-2 [5205 kB] Get: 129 http://deb.debian.org/debian bookworm/main amd64 libptexenc1 amd64 2022.20220321.62855-5.1+deb12u1 [43.7 kB] Get: 130 http://deb.debian.org/debian bookworm/main amd64 libsynctex2 amd64 2022.20220321.62855-5.1+deb12u1 [59.8 kB] Get: 131 http://deb.debian.org/debian bookworm/main amd64 libteckit0 amd64 2.5.11+ds1-1+b1 [335 kB] Get: 132 http://deb.debian.org/debian bookworm/main amd64 libtexlua53-5 amd64 2022.20220321.62855-5.1+deb12u1 [111 kB] Get: 133 http://deb.debian.org/debian bookworm/main amd64 libtexluajit2 amd64 2022.20220321.62855-5.1+deb12u1 [246 kB] Get: 134 http://deb.debian.org/debian bookworm/main amd64 libxi6 amd64 2:1.8-1+b1 [84.2 kB] Get: 135 http://deb.debian.org/debian bookworm/main amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [58.3 kB] Get: 136 http://deb.debian.org/debian bookworm/main amd64 tex-common all 6.18 [32.5 kB] Get: 137 http://deb.debian.org/debian bookworm/main amd64 preview-latex-style all 12.2-1 [201 kB] Get: 138 http://deb.debian.org/debian bookworm/main amd64 sphinx-common all 5.3.0-4 [653 kB] Get: 139 http://deb.debian.org/debian bookworm/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get: 140 http://deb.debian.org/debian bookworm/main amd64 texlive-binaries amd64 2022.20220321.62855-5.1+deb12u1 [10.5 MB] Get: 141 http://deb.debian.org/debian bookworm/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 142 http://deb.debian.org/debian bookworm/main amd64 texlive-base all 2022.20230122-3 [21.9 MB] Get: 143 http://deb.debian.org/debian bookworm/main amd64 texlive-fonts-recommended all 2022.20230122-3 [4988 kB] Get: 144 http://deb.debian.org/debian bookworm/main amd64 texlive-latex-base all 2022.20230122-3 [1182 kB] Get: 145 http://deb.debian.org/debian bookworm/main amd64 texlive-latex-recommended all 2022.20230122-3 [8880 kB] Get: 146 http://deb.debian.org/debian bookworm/main amd64 texlive-pictures all 2022.20230122-3 [15.8 MB] Get: 147 http://deb.debian.org/debian bookworm/main amd64 texlive-latex-extra all 2022.20230122-4 [19.2 MB] Get: 148 http://deb.debian.org/debian bookworm/main amd64 texlive-plain-generic all 2022.20230122-4 [28.9 MB] Fetched 222 MB in 5s (45.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18148 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18464 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../3-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_amd64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18898 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../003-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../006-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../008-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../009-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package ucf. Preparing to unpack .../011-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../012-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../013-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../014-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../015-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../016-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../017-d-shlibs_0.104_all.deb ... Unpacking d-shlibs (0.104) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../018-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../019-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../020-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../021-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../022-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../023-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../024-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../025-libelf1_0.188-2.1_amd64.deb ... Unpacking libelf1:amd64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../026-dwz_0.15-1_amd64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../027-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../028-libxml2_2.9.14+dfsg-1.3~deb12u1_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Selecting previously unselected package gettext. Preparing to unpack .../029-gettext_0.21-12_amd64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../030-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../031-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../032-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package dh-linktree. Preparing to unpack .../033-dh-linktree_0.9_all.deb ... Unpacking dh-linktree (0.9) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../034-libbsd0_0.11.7-2_amd64.deb ... Unpacking libbsd0:amd64 (0.11.7-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../035-libedit2_3.1-20221030-2_amd64.deb ... Unpacking libedit2:amd64 (3.1-20221030-2) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../036-libz3-4_4.8.12-3.1_amd64.deb ... Unpacking libz3-4:amd64 (4.8.12-3.1) ... Selecting previously unselected package libllvm14:amd64. Preparing to unpack .../037-libllvm14_1%3a14.0.6-12_amd64.deb ... Unpacking libllvm14:amd64 (1:14.0.6-12) ... Selecting previously unselected package libclang-cpp14. Preparing to unpack .../038-libclang-cpp14_1%3a14.0.6-12_amd64.deb ... Unpacking libclang-cpp14 (1:14.0.6-12) ... Selecting previously unselected package libclang1-14. Preparing to unpack .../039-libclang1-14_1%3a14.0.6-12_amd64.deb ... Unpacking libclang1-14 (1:14.0.6-12) ... Selecting previously unselected package doxygen. Preparing to unpack .../040-doxygen_1.9.4-4_amd64.deb ... Unpacking doxygen (1.9.4-4) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../041-libbrotli1_1.0.9-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../042-libpng16-16_1.6.39-2_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.39-2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../043-libfreetype6_2.12.1+dfsg-5_amd64.deb ... Unpacking libfreetype6:amd64 (2.12.1+dfsg-5) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../044-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... 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Setting up libfreetype6:amd64 (2.12.1+dfsg-5) ... Setting up ucf (3.0043+nmu1) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up libx265-199:amd64 (3.5-2+b1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libllvm14:amd64 (1:14.0.6-12) ... Setting up libgvpr2:amd64 (2.42.2-7+b3) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up libfontconfig1:amd64 (2.14.1-4) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libpaper1:amd64 (1.1.29) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libxpm4:amd64 (1:3.5.12-1.1+deb12u1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up libpango-1.0-0:amd64 (1.50.12+ds-1) ... 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Setting up libxaw7:amd64 (2:1.0.14-1) ... Setting up doxygen (1.9.4-4) ... Setting up libgvc6 (2.42.2-7+b3) ... Setting up texlive-binaries (2022.20220321.62855-5.1+deb12u1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2022.20230122-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up dh-linktree (0.9) ... Setting up graphviz (2.42.2-7+b3) ... Setting up texlive-plain-generic (2022.20230122-4) ... Setting up texlive-latex-base (2022.20230122-3) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/librostlab-1.0.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../librostlab_1.0.20-12_source.changes dpkg-buildpackage: info: source package librostlab dpkg-buildpackage: info: source version 1.0.20-12 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with linktree dh_clean debian/rules binary dh binary --with linktree dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:9: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:9: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:7: installing './compile' configure.ac:5: installing './missing' lib/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' dh_auto_configure -- --enable-doxygen-dot --enable-doxygen-pdf ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-doxygen-dot --enable-doxygen-pdf checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for doxygen... /usr/bin/doxygen checking for perl... /usr/bin/perl checking for dot... /usr/bin/dot checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for egrep... /bin/egrep checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Makefile config.status: creating lib/Doxyfile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' /usr/bin/make -C lib doxygen-doc make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' rm -rf ../doxygen-doc SRCDIR='.' PROJECT='librostlab' DOCDIR='../doxygen-doc' VERSION='1.0.20' PERL_PATH='/usr/bin/perl' HAVE_DOT='YES' DOT_PATH='/usr/bin' GENERATE_MAN='NO' GENERATE_RTF='NO' GENERATE_XML='NO' GENERATE_HTMLHELP='NO' GENERATE_CHI='NO' GENERATE_HTML='YES' GENERATE_LATEX='YES' /usr/bin/doxygen ./Doxyfile warning: Tag 'SYMBOL_CACHE_SIZE' at line 290 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 490 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 761 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 847 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'USE_INLINE_TREES' at line 1032 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1165 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 1257 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 1263 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 1428 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 1441 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 1450 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. Doxygen version used: 1.9.4 Notice: Output directory '../doxygen-doc' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/librostlab-1.0.20/lib/rostlab Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/aux_functions.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/aux_functions.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/blosum62.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/blosum62.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cwd_resource.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cwd_resource.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cxxgrp.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cxxgrp.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cxxpwd.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/cxxpwd.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/euid_egid_resource.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/euid_egid_resource.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/file_lock_resource.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/file_lock_resource.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/mapAA2int.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/mapAA2int.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/readFasta.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/readFasta.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdexcept.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdexcept.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdio.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdio.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdlib.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/rostlab_stdlib.h... Preprocessing /build/reproducible-path/librostlab-1.0.20/lib/rostlab/umask_resource.h... Parsing file /build/reproducible-path/librostlab-1.0.20/lib/rostlab/umask_resource.h... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file rostlab/aux_functions.h... Generating code for file rostlab/blosum62.h... Generating code for file rostlab/cwd_resource.h... Generating code for file rostlab/cxxgrp.h... Generating code for file rostlab/cxxpwd.h... Generating code for file rostlab/euid_egid_resource.h... Generating code for file rostlab/file_lock_resource.h... Generating code for file rostlab/mapAA2int.h... Generating code for file rostlab/readFasta.h... Generating code for file rostlab/rostlab_stdexcept.h... Generating code for file rostlab/rostlab_stdio.h... Generating code for file rostlab/rostlab_stdlib.h... Generating code for file rostlab/umask_resource.h... Generating file documentation... Generating docs for file rostlab/aux_functions.h... Generating docs for file rostlab/blosum62.h... Generating docs for file rostlab/cwd_resource.h... Generating docs for file rostlab/cxxgrp.h... Generating docs for file rostlab/cxxpwd.h... Generating docs for file rostlab/euid_egid_resource.h... Generating docs for file rostlab/file_lock_resource.h... Generating docs for file rostlab/mapAA2int.h... Generating docs for file rostlab/readFasta.h... Generating docs for file rostlab/rostlab_stdexcept.h... Generating docs for file rostlab/rostlab_stdio.h... Generating docs for file rostlab/rostlab_stdlib.h... Generating docs for file rostlab/umask_resource.h... Generating page documentation... Generating group documentation... Generating class documentation... Generating concept documentation... Generating namespace index... Generating docs for namespace rostlab Generating docs for compound rostlab::cwd_resource... Generating docs for compound rostlab::cxx_group... Generating docs for compound rostlab::cxx_passwd... Generating docs for compound rostlab::error_backtracer... Generating docs for compound rostlab::euid_egid_resource... Generating docs for compound rostlab::exception... Generating docs for compound rostlab::file_lock_resource... Generating docs for nested compound rostlab::file_lock_resource::wouldblock... Generating docs for compound rostlab::gid_not_found_error... Generating docs for compound rostlab::gname_not_found_error... Generating docs for compound rostlab::runtime_error... Generating docs for compound rostlab::uid_not_found_error... Generating docs for compound rostlab::umask_resource... Generating docs for compound rostlab::uname_not_found_error... Generating docs for namespace rostlab::bio Generating docs for compound rostlab::bio::seq... Generating docs for namespace rostlab::bio::fmt Generating docs for compound rostlab::bio::fmt::fasta... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... Running dot... Generating dot graphs using 16 parallel threads... Running dot for graph 1/66 Running dot for graph 2/66 Running dot for graph 3/66 Running dot for graph 4/66 Running dot for graph 5/66 Running dot for graph 6/66 Running dot for graph 7/66 Running dot for graph 8/66 Running dot for graph 9/66 Running dot for graph 10/66 Running dot for graph 11/66 Running dot for graph 12/66 Running dot for graph 13/66 Running dot for graph 14/66 Running dot for graph 15/66 Running dot for graph 16/66 Running dot for graph 17/66 Running dot for graph 18/66 Running dot for graph 19/66 Running dot for graph 20/66 Running dot for graph 21/66 Running dot for graph 22/66 Running dot for graph 23/66 Running dot for graph 24/66 Running dot for graph 25/66 Running dot for graph 26/66 Running dot for graph 27/66 Running dot for graph 28/66 Running dot for graph 29/66 Running dot for graph 30/66 Running dot for graph 31/66 Running dot for graph 32/66 Running dot for graph 33/66 Running dot for graph 34/66 Running dot for graph 35/66 Running dot for graph 36/66 Running dot for graph 37/66 Running dot for graph 38/66 Running dot for graph 39/66 Running dot for graph 40/66 Running dot for graph 41/66 Running dot for graph 42/66 Running dot for graph 43/66 Running dot for graph 44/66 Running dot for graph 45/66 Running dot for graph 46/66 Running dot for graph 47/66 Running dot for graph 48/66 Running dot for graph 49/66 Running dot for graph 50/66 Running dot for graph 51/66 Running dot for graph 52/66 Running dot for graph 53/66 Running dot for graph 54/66 Running dot for graph 55/66 Running dot for graph 56/66 Running dot for graph 57/66 Running dot for graph 58/66 Running dot for graph 59/66 Running dot for graph 60/66 Running dot for graph 61/66 Running dot for graph 62/66 Running dot for graph 63/66 Running dot for graph 64/66 Running dot for graph 65/66 Running dot for graph 66/66 Patching output file 1/41 Patching output file 2/41 Patching output file 3/41 Patching output file 4/41 Patching output file 5/41 Patching output file 6/41 Patching output file 7/41 Patching output file 8/41 Patching output file 9/41 Patching output file 10/41 Patching output file 11/41 Patching output file 12/41 Patching output file 13/41 Patching output file 14/41 Patching output file 15/41 Patching output file 16/41 Patching output file 17/41 Patching output file 18/41 Patching output file 19/41 Patching output file 20/41 Patching output file 21/41 Patching output file 22/41 Patching output file 23/41 Patching output file 24/41 Patching output file 25/41 Patching output file 26/41 Patching output file 27/41 Patching output file 28/41 Patching output file 29/41 Patching output file 30/41 Patching output file 31/41 Patching output file 32/41 Patching output file 33/41 Patching output file 34/41 Patching output file 35/41 Patching output file 36/41 Patching output file 37/41 Patching output file 38/41 Patching output file 39/41 Patching output file 40/41 Patching output file 41/41 lookup cache used 180/65536 hits=517 misses=194 finished... cd ../doxygen-doc/latex; \ rm -f *.aux *.toc *.idx *.ind *.ilg *.log *.out; \ /usr/bin/pdflatex refman.tex; \ /usr/bin/makeindex refman.idx; \ /usr/bin/pdflatex refman.tex; \ countdown=5; \ while /bin/egrep 'Rerun (LaTeX|to get cross-references right)' \ refman.log > /dev/null 2>&1 \ && test $countdown -gt 0; do \ /usr/bin/pdflatex refman.tex; \ countdown=`expr $countdown - 1`; \ done; \ mv refman.pdf ../librostlab.pdf This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./refman.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array-2016-10-06.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/fixltx2e.sty Package fixltx2e Warning: fixltx2e is not required with releases after 2015 (fixltx2e) All fixes are now in the LaTeX kernel. 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Check if current package is valid. ) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def) (/usr/share/texlive/texmf-dist/tex/latex/caption/caption.sty (/usr/share/texlive/texmf-dist/tex/latex/caption/caption3.sty) (/usr/share/texlive/texmf-dist/tex/latex/caption/ltcaption.sty)) (/usr/share/texlive/texmf-dist/tex/latex/etoc/etoc.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file refman.aux. (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex No file refman.toc. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] Chapter 1. (./namespaces.tex (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) (/usr/share/texlive/texmf-dist/tex/latex/wasysym/uwasy.fd) LaTeX Warning: Reference `namespacerostlab' on page 1 undefined on input line 3 . LaTeX Warning: Reference `namespacerostlab_1_1bio' on page 1 undefined on input line 4. LaTeX Warning: Reference `namespacerostlab_1_1bio_1_1fmt' on page 1 undefined o n input line 5. ) [1] [2] Chapter 2. (./hierarchy.tex LaTeX Warning: Reference `classrostlab_1_1cwd__resource' on page 3 undefined on input line 3. LaTeX Warning: Reference `structrostlab_1_1cxx__group' on page 3 undefined on i nput line 4. LaTeX Warning: Reference `structrostlab_1_1cxx__passwd' on page 3 undefined on input line 5. LaTeX Warning: Reference `classrostlab_1_1error__backtracer' on page 3 undefine d on input line 6. LaTeX Warning: Reference `classrostlab_1_1exception' on page 3 undefined on inp ut line 8. 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LaTeX Warning: Reference `classrostlab_1_1file__lock__resource_1_1wouldblock' o n page 5 undefined on input line 18. ) [5] [6] Chapter 4. (./files.tex LaTeX Warning: Reference `aux__functions_8h' on page 7 undefined on input line 3. LaTeX Warning: Reference `blosum62_8h' on page 7 undefined on input line 4. LaTeX Warning: Reference `cwd__resource_8h' on page 7 undefined on input line 5 . LaTeX Warning: Reference `cxxgrp_8h' on page 7 undefined on input line 6. LaTeX Warning: Reference `cxxpwd_8h' on page 7 undefined on input line 7. LaTeX Warning: Reference `euid__egid__resource_8h' on page 7 undefined on input line 8. LaTeX Warning: Reference `file__lock__resource_8h' on page 7 undefined on input line 9. LaTeX Warning: Reference `mapAA2int_8h' on page 7 undefined on input line 10. LaTeX Warning: Reference `readFasta_8h' on page 7 undefined on input line 11. LaTeX Warning: Reference `rostlab__stdexcept_8h' on page 7 undefined on input l ine 12. LaTeX Warning: Reference `rostlab__stdio_8h' on page 7 undefined on input line 13. LaTeX Warning: Reference `rostlab__stdlib_8h' on page 7 undefined on input line 14. LaTeX Warning: Reference `umask__resource_8h' on page 7 undefined on input line 15. ) [7] [8] Chapter 5. (./namespacerostlab.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [9] [10] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [11] [12] [13] [14] [15] [16] [17]) (./namespacerostlab_1_1bio.tex) (./namespacerostlab_1_1bio_1_1fmt.tex) [18] Chapter 6. (./classrostlab_1_1cwd__resource.tex [19]) (./structrostlab_1_1cxx__group.tex [20] [21]) (./structrostlab_1_1cxx__passwd.tex [22] [23]) (./classrostlab_1_1error__backtracer.tex [24] <./classrostlab_1_1error__backtra cer__inherit__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1error__backtracer__in herit__graph.pdf): PDF inclusion: multiple pdfs with page group included in a s ingle page > [25]) (./classrostlab_1_1euid__egid__resource.tex [26]) (./classrostlab_1_1exception.tex <./classrostlab_1_1exception__inherit__graph.p df pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1exception__inherit__g raph.pdf): PDF inclusion: multiple pdfs with page group included in a single pa ge > <./classrostlab_1_1exception__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1exception__coll__grap h.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [27]) (./classrostlab_1_1bio_1_1fmt_1_1fasta.tex) (./classrostlab_1_1file__lock__resource.tex [28] [29] [30]) (./classrostlab_1_1gid__not__found__error.tex <./classrostlab_1_1gid__not__foun d__error__inherit__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gid__not__found__erro r__inherit__graph.pdf): PDF inclusion: multiple pdfs with page group included i n a single page > [31] <./classrostlab_1_1gid__not__found__error__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gid__not__found__erro r__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [32]) (./classrostlab_1_1gname__not__found__error.tex <./classrostlab_1_1gnam e__not__found__error__inherit__graph.pdf> <./classrostlab_1_1gname__not__found_ _error__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gname__not__found__er ror__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [33]) (./classrostlab_1_1runtime__error.tex <./classrostlab_1_1runtime__error __inherit__graph.pdf> [34] <./classrostlab_1_1runtime__error__coll__graph.pdf> [35]) (./classrostlab_1_1bio_1_1seq.tex [36]) (./classrostlab_1_1uid__not__found__error.tex <./classrostlab_1_1uid__not__foun d__error__inherit__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uid__not__found__erro r__inherit__graph.pdf): PDF inclusion: multiple pdfs with page group included i n a single page > <./classrostlab_1_1uid__not__found__error__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uid__not__found__erro r__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [37] [38]) (./classrostlab_1_1umask__resource.tex) (./classrostlab_1_1uname__not__found__error.tex <./classrostlab_1_1uname__not__ found__error__inherit__graph.pdf> [39] <./classrostlab_1_1uname__not__found__er ror__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uname__not__found__er ror__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [40]) (./classrostlab_1_1file__lock__resource_1_1wouldblock.tex <./classrostl ab_1_1file__lock__resource_1_1wouldblock__inherit__graph.pdf> <./classrostlab_1 _1file__lock__resource_1_1wouldblock__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1file__lock__resource_ 1_1wouldblock__coll__graph.pdf): PDF inclusion: multiple pdfs with page group i ncluded in a single page > [41]) [42] Chapter 7. (./aux__functions_8h.tex <./aux__functions_8h__incl.pdf> [43]) (./aux__functions_8h_source.tex [44] [45]) (./blosum62_8h.tex [46]) (./blosum62_8h_source.tex) (./cwd__resource_8h.tex <./cwd__resource_8h__incl.pd f pdfTeX warning: /usr/bin/pdflatex (file ./cwd__resource_8h__incl.pdf): PDF incl usion: multiple pdfs with page group included in a single page >) (./cwd__resource_8h_source.tex [47] [48]) (./cxxgrp_8h.tex <./cxxgrp_8h__inc l.pdf pdfTeX warning: /usr/bin/pdflatex (file ./cxxgrp_8h__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page >) (./cxxgrp_8h_source.tex [49] [50]) (./cxxpwd_8h.tex <./cxxpwd_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./cxxpwd_8h__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [51]) (./cxxpwd_8h_source.tex [52] [53]) (./euid__egid__resource_8h.tex <./eu id__egid__resource_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./euid__egid__resource_8h__incl.pdf): P DF inclusion: multiple pdfs with page group included in a single page >) (./euid__egid__resource_8h_source.tex [54] [55]) (./file__lock__resource_8h.tex <./file__lock__resource_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./file__lock__resource_8h__incl.pdf): P DF inclusion: multiple pdfs with page group included in a single page >) (./file__lock__resource_8h_source.tex [56] [57]) (./mapAA2int_8h.tex <./mapA A2int_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./mapAA2int_8h__incl.pdf): PDF inclusio n: multiple pdfs with page group included in a single page >) (./mapAA2int_8h_source.tex [58] [59]) (./readFasta_8h.tex <./readFasta_8h__i ncl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./readFasta_8h__incl.pdf): PDF inclusio n: multiple pdfs with page group included in a single page >) (./readFasta_8h_source.tex [60] [61]) (./rostlab__stdexcept_8h.tex <./rostla b__stdexcept_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./rostlab__stdexcept_8h__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > <./rostlab__stdexcept_8h__dep__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./rostlab__stdexcept_8h__dep__incl.pdf) : PDF inclusion: multiple pdfs with page group included in a single page > [62]) (./rostlab__stdexcept_8h_source.tex [63]) (./rostlab__stdio_8h.tex <./r ostlab__stdio_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./rostlab__stdio_8h__incl.pdf): PDF inc lusion: multiple pdfs with page group included in a single page >) (./rostlab__stdio_8h_source.tex [64]) (./rostlab__stdlib_8h.tex <./rostlab__ stdlib_8h__incl.pdf> [65]) (./rostlab__stdlib_8h_source.tex [66] [67]) (./umask__resource_8h.tex <./umask__resource_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./umask__resource_8h__incl.pdf): PDF in clusion: multiple pdfs with page group included in a single page >) (./umask__resource_8h_source.tex [68]) [69] [70] No file refman.ind. (./refman.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `refman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ){/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on refman.pdf (72 pages, 509387 bytes). Transcript written on refman.log. This is makeindex, version 2.16 [TeX Live 2022] (kpathsea + Thai support). Scanning input file refman.idx....done (213 entries accepted, 0 rejected). Sorting entries.....done (1698 comparisons). Generating output file refman.ind....done (271 lines written, 0 warnings). Output written in refman.ind. Transcript written in refman.ilg. 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(./namespaces.tex) [1] [2] Chapter 2. (./hierarchy.tex) [3] [4] Chapter 3. (./annotated.tex) [5] [6] Chapter 4. (./files.tex) [7] [8] Chapter 5. (./namespacerostlab.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [9] [10] [11] [12] [13] [14] [15] [16] [17]) (./namespacerostlab_1_1bio.tex) (./namespacerostlab_1_1bio_1_1fmt.tex) [18] Chapter 6. (./classrostlab_1_1cwd__resource.tex [19]) (./structrostlab_1_1cxx__group.tex [20] [21]) (./structrostlab_1_1cxx__passwd.tex [22] [23]) (./classrostlab_1_1error__backtracer.tex [24] <./classrostlab_1_1error__backtra cer__inherit__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1error__backtracer__in herit__graph.pdf): PDF inclusion: multiple pdfs with page group included in a s ingle page > [25]) (./classrostlab_1_1euid__egid__resource.tex [26]) (./classrostlab_1_1exception.tex <./classrostlab_1_1exception__inherit__graph.p df pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1exception__inherit__g raph.pdf): PDF inclusion: multiple pdfs with page group included in a single pa ge > <./classrostlab_1_1exception__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1exception__coll__grap h.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [27]) (./classrostlab_1_1bio_1_1fmt_1_1fasta.tex) (./classrostlab_1_1file__lock__resource.tex [28] [29] [30]) (./classrostlab_1_1gid__not__found__error.tex <./classrostlab_1_1gid__not__foun d__error__inherit__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gid__not__found__erro r__inherit__graph.pdf): PDF inclusion: multiple pdfs with page group included i n a single page > [31] <./classrostlab_1_1gid__not__found__error__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gid__not__found__erro r__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [32]) (./classrostlab_1_1gname__not__found__error.tex <./classrostlab_1_1gnam e__not__found__error__inherit__graph.pdf> <./classrostlab_1_1gname__not__found_ _error__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1gname__not__found__er ror__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [33]) (./classrostlab_1_1runtime__error.tex <./classrostlab_1_1runtime__error __inherit__graph.pdf> [34] <./classrostlab_1_1runtime__error__coll__graph.pdf> [35]) (./classrostlab_1_1bio_1_1seq.tex [36]) (./classrostlab_1_1uid__not__found__error.tex <./classrostlab_1_1uid__not__foun d__error__inherit__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uid__not__found__erro r__inherit__graph.pdf): PDF inclusion: multiple pdfs with page group included i n a single page > <./classrostlab_1_1uid__not__found__error__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uid__not__found__erro r__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [37] [38]) (./classrostlab_1_1umask__resource.tex) (./classrostlab_1_1uname__not__found__error.tex <./classrostlab_1_1uname__not__ found__error__inherit__graph.pdf> [39] <./classrostlab_1_1uname__not__found__er ror__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uname__not__found__er ror__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [40]) (./classrostlab_1_1file__lock__resource_1_1wouldblock.tex <./classrostl ab_1_1file__lock__resource_1_1wouldblock__inherit__graph.pdf> <./classrostlab_1 _1file__lock__resource_1_1wouldblock__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1file__lock__resource_ 1_1wouldblock__coll__graph.pdf): PDF inclusion: multiple pdfs with page group i ncluded in a single page > [41]) [42] Chapter 7. (./aux__functions_8h.tex <./aux__functions_8h__incl.pdf> [43]) (./aux__functions_8h_source.tex [44] [45]) (./blosum62_8h.tex [46]) (./blosum62_8h_source.tex) (./cwd__resource_8h.tex <./cwd__resource_8h__incl.pd f pdfTeX warning: /usr/bin/pdflatex (file ./cwd__resource_8h__incl.pdf): PDF incl usion: multiple pdfs with page group included in a single page >) (./cwd__resource_8h_source.tex [47] [48]) (./cxxgrp_8h.tex <./cxxgrp_8h__inc l.pdf pdfTeX warning: /usr/bin/pdflatex (file ./cxxgrp_8h__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page >) (./cxxgrp_8h_source.tex [49] [50]) (./cxxpwd_8h.tex <./cxxpwd_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./cxxpwd_8h__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > [51]) (./cxxpwd_8h_source.tex [52] [53]) (./euid__egid__resource_8h.tex <./eu id__egid__resource_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./euid__egid__resource_8h__incl.pdf): P DF inclusion: multiple pdfs with page group included in a single page >) (./euid__egid__resource_8h_source.tex [54] [55]) (./file__lock__resource_8h.tex <./file__lock__resource_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./file__lock__resource_8h__incl.pdf): P DF inclusion: multiple pdfs with page group included in a single page >) (./file__lock__resource_8h_source.tex [56] [57]) (./mapAA2int_8h.tex <./mapA A2int_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./mapAA2int_8h__incl.pdf): PDF inclusio n: multiple pdfs with page group included in a single page >) (./mapAA2int_8h_source.tex [58] [59]) (./readFasta_8h.tex <./readFasta_8h__i ncl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./readFasta_8h__incl.pdf): PDF inclusio n: multiple pdfs with page group included in a single page >) (./readFasta_8h_source.tex [60] [61]) (./rostlab__stdexcept_8h.tex <./rostla b__stdexcept_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./rostlab__stdexcept_8h__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > <./rostlab__stdexcept_8h__dep__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./rostlab__stdexcept_8h__dep__incl.pdf) : PDF inclusion: multiple pdfs with page group included in a single page > [62]) (./rostlab__stdexcept_8h_source.tex [63]) (./rostlab__stdio_8h.tex <./r ostlab__stdio_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./rostlab__stdio_8h__incl.pdf): PDF inc lusion: multiple pdfs with page group included in a single page >) (./rostlab__stdio_8h_source.tex [64]) (./rostlab__stdlib_8h.tex <./rostlab__ stdlib_8h__incl.pdf> [65]) (./rostlab__stdlib_8h_source.tex [66] [67]) (./umask__resource_8h.tex <./umask__resource_8h__incl.pdf pdfTeX warning: /usr/bin/pdflatex (file ./umask__resource_8h__incl.pdf): PDF in clusion: multiple pdfs with page group included in a single page >) (./umask__resource_8h_source.tex [68]) [69] [70] (./refman.ind [71] [72] [73]) (./refman.aux) Package rerunfilecheck Warning: File `refman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ){/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on refman.pdf (81 pages, 543171 bytes). Transcript written on refman.log. make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' dh_auto_build -Nlibrostlab-doc make -j15 make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' make all-recursive make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20' Making all in lib make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' make all-am make[4]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/librostlab-1.0.20=. -fstack-protector-strong -Wformat -Werror=format-security -c -o librostlab_la-blosum62.lo `test -f 'blosum62.cpp' || echo './'`blosum62.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/librostlab-1.0.20=. -fstack-protector-strong -Wformat -Werror=format-security -c blosum62.cpp -fPIC -DPIC -o .libs/librostlab_la-blosum62.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/librostlab-1.0.20=. -fstack-protector-strong -Wformat -Werror=format-security -c blosum62.cpp -o librostlab_la-blosum62.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/librostlab-1.0.20=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 3:0:0 -Wall -Wl,-z,relro -Wl,-z,now -o librostlab.la -rpath /usr/lib/x86_64-linux-gnu librostlab_la-blosum62.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/12/crtbeginS.o .libs/librostlab_la-blosum62.o -L/usr/lib/gcc/x86_64-linux-gnu/12 -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/12/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,librostlab.so.3 -o .libs/librostlab.so.3.0.0 libtool: link: (cd ".libs" && rm -f "librostlab.so.3" && ln -s "librostlab.so.3.0.0" "librostlab.so.3") libtool: link: (cd ".libs" && rm -f "librostlab.so" && ln -s "librostlab.so.3.0.0" "librostlab.so") libtool: link: ar cr .libs/librostlab.a librostlab_la-blosum62.o libtool: link: ranlib .libs/librostlab.a libtool: link: ( cd ".libs" && rm -f "librostlab.la" && ln -s "../librostlab.la" "librostlab.la" ) make[4]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20' make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' dh_auto_test make -j15 check "TESTSUITEFLAGS=-j15 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' Making check in lib make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' make check-am make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20' make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/librostlab-1.0.20/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' Making install in lib make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' make install-am make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' make[4]: Entering directory '/build/reproducible-path/librostlab-1.0.20/lib' /bin/mkdir -p '/build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c librostlab.la '/build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/librostlab.so.3.0.0 /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/x86_64-linux-gnu/librostlab.so.3.0.0 libtool: install: (cd /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f librostlab.so.3.0.0 librostlab.so.3 || { rm -f librostlab.so.3 && ln -s librostlab.so.3.0.0 librostlab.so.3; }; }) libtool: install: (cd /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f librostlab.so.3.0.0 librostlab.so || { rm -f librostlab.so && ln -s librostlab.so.3.0.0 librostlab.so; }; }) libtool: install: /usr/bin/install -c .libs/librostlab.lai /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/x86_64-linux-gnu/librostlab.la libtool: install: /usr/bin/install -c .libs/librostlab.a /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/x86_64-linux-gnu/librostlab.a libtool: install: chmod 644 /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/x86_64-linux-gnu/librostlab.a libtool: install: ranlib /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/x86_64-linux-gnu/librostlab.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/include/rostlab' /usr/bin/install -c -m 644 rostlab/aux_functions.h rostlab/blosum62.h rostlab/cwd_resource.h rostlab/cxxgrp.h rostlab/cxxpwd.h rostlab/euid_egid_resource.h rostlab/file_lock_resource.h rostlab/mapAA2int.h rostlab/readFasta.h rostlab/rostlab_stdexcept.h rostlab/rostlab_stdio.h rostlab/rostlab_stdlib.h rostlab/umask_resource.h '/build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/include/rostlab' make[4]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20/lib' make[2]: Entering directory '/build/reproducible-path/librostlab-1.0.20' make[3]: Entering directory '/build/reproducible-path/librostlab-1.0.20' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' make[2]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' dh_install d-shlibmove --commit \ --multiarch \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/librostlab3-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/librostlab3/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/librostlab.a debian/librostlab3-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/librostlab.so debian/librostlab3-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/x86_64-linux-gnu/librostlab.so.3 debian/librostlab3/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/librostlab-1.0.20/debian/tmp/usr/lib/x86_64-linux-gnu/librostlab.so.3.0.0 debian/librostlab3/usr/lib/x86_64-linux-gnu PKGDEV=librostlab3-dev PKGSHL=librostlab3 install -d -m 755 debian/librostlab3-dev/usr/include mv debian/tmp/usr/include/rostlab debian/librostlab3-dev/usr/include find debian -name "lib*.la" -delete make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' debian/rules override_dh_installdocs make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' dh_installdocs dh_installdocs: warning: Cannot auto-detect main package for librostlab-doc. If the default is wrong, please use --doc-main-package find debian -name "*_*.md5" -delete make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' dh_installchangelogs dh_installexamples dh_perl dh_link dh_linktree dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' dh_compress -Xlibrostlab.tag make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' dh_fixperms debian/rules override_dh_missing make[1]: Entering directory '/build/reproducible-path/librostlab-1.0.20' dh_missing --list-missing make[1]: Leaving directory '/build/reproducible-path/librostlab-1.0.20' dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package librostlab-doc: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package librostlab-doc: substitution variable ${js:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package librostlab3: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package librostlab3: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'librostlab-doc' in '../librostlab-doc_1.0.20-12_all.deb'. dpkg-deb: building package 'librostlab3' in '../librostlab3_1.0.20-12_amd64.deb'. dpkg-deb: building package 'librostlab3-dbgsym' in '../librostlab3-dbgsym_1.0.20-12_amd64.deb'. dpkg-deb: building package 'librostlab3-dev' in '../librostlab3-dev_1.0.20-12_amd64.deb'. dpkg-genbuildinfo --build=binary -O../librostlab_1.0.20-12_amd64.buildinfo dpkg-genchanges --build=binary -O../librostlab_1.0.20-12_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1488171 and its subdirectories I: Current time: Sat Jan 6 05:29:05 -12 2024 I: pbuilder-time-stamp: 1704562145