I: pbuilder: network access will be disabled during build I: Current time: Tue Jun 4 18:54:29 +14 2024 I: pbuilder-time-stamp: 1717476869 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libobjcryst_2022.1.4+ds1-2.dsc] I: copying [./libobjcryst_2022.1.4+ds1.orig.tar.xz] I: copying [./libobjcryst_2022.1.4+ds1-2.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Jan 9 08:44:38 2023 +14 gpgv: using EDDSA key EE9AD6F90520FA11F69F4824477B0DB0263A54D8 gpgv: issuer "stefanor@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libobjcryst_2022.1.4+ds1-2.dsc: no acceptable signature found dpkg-source: info: extracting libobjcryst in libobjcryst-2022.1.4+ds1 dpkg-source: info: unpacking libobjcryst_2022.1.4+ds1.orig.tar.xz dpkg-source: info: unpacking libobjcryst_2022.1.4+ds1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying scons_debian.patch dpkg-source: info: applying fix-example.patch dpkg-source: info: applying symmetry-first.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4073567/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 4 18:54 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/4073567/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/4073567/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.15(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DIRSTACK=() DISTRIBUTION=bookworm EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=d95e4f47dfbe41a992b18d5944482a07 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=4073567 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fCFqzkDk/pbuilderrc_NrVy --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fCFqzkDk/b2 --logfile b2/build.log --extrapackages usrmerge libobjcryst_2022.1.4+ds1-2.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 24 2023 bash -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp -rwxr-xr-x 1 root root 125640 Jan 6 2023 dash -rwxr-xr-x 1 root root 121904 Sep 21 2022 date -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd -rwxr-xr-x 1 root root 102200 Sep 21 2022 df -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir -rwxr-xr-x 1 root root 88656 Mar 24 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 21 2022 false -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 24 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 25 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 20 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln -rwxr-xr-x 1 root root 53024 Mar 24 2023 login -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls -rwxr-xr-x 1 root root 207168 Mar 24 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 24 2023 more -rwsr-xr-x 1 root root 59704 Mar 24 2023 mount -rwxr-xr-x 1 root root 18744 Mar 24 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd lrwxrwxrwx 1 root root 4 Apr 24 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 3 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 6 2023 sed lrwxrwxrwx 1 root root 9 Jun 4 18:54 sh -> /bin/bash -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty -rwsr-xr-x 1 root root 72000 Mar 24 2023 su -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync -rwxr-xr-x 1 root root 531984 Apr 7 2023 tar -rwxr-xr-x 1 root root 14520 Nov 3 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch -rwxr-xr-x 1 root root 35664 Sep 21 2022 true -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 24 2023 umount -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 24 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/4073567/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), scons, libcctbx-dev, libboost-dev, libnewmat10-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on scons; however: Package scons is not installed. pbuilder-satisfydepends-dummy depends on libcctbx-dev; however: Package libcctbx-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libnewmat10-dev; however: Package libnewmat10-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libann-cctbx-dev{a} libann-cctbx0{a} libarchive-zip-perl{a} libboost-dev{a} libboost-python-dev{a} libboost-python1.74-dev{a} libboost-python1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libcbf1{a} libccp4-data{a} libccp4-dev{a} libccp4c0{a} libccp4f0{a} libcctbx-dev{a} libcctbx0{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libhdf5-103-1{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libmmdb2-0{a} libnewmat10-dev{a} libnewmat10ldbl{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libsz2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} scons{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 85 newly installed, 0 to remove and 0 not upgraded. Need to get 53.0 MB of archives. After unpacking 322 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 libaec0 amd64 1.0.6-1+b1 [21.1 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libann-cctbx0 amd64 1.1.2+doc-9+b1 [32.4 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 libann-cctbx-dev amd64 1.1.2+doc-9+b1 [44.6 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-20 [9510 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libboost-python1.74.0 amd64 1.74.0+ds1-20 [289 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get: 53 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-2 [131 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libboost-python1.74-dev amd64 1.74.0+ds1-20 [310 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libboost-python-dev amd64 1.74.0.3 [4632 B] Get: 62 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-9 [386 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 libsz2 amd64 1.0.6-1+b1 [7804 B] Get: 72 http://deb.debian.org/debian bookworm/main amd64 libhdf5-103-1 amd64 1.10.8+repack1-1 [1237 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 libcbf1 amd64 0.9.7+dfsg1-2+b2 [353 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 libccp4-data all 8.0.0-2 [62.3 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 libccp4c0 amd64 8.0.0-2 [88.5 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libmmdb2-0 amd64 2.0.22-1 [338 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 libccp4f0 amd64 8.0.0-2 [210 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libccp4-dev amd64 8.0.0-2 [42.8 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libcctbx0 amd64 2022.9+ds2+~3.11.2+ds1-6+b1 [2369 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libcctbx-dev amd64 2022.9+ds2+~3.11.2+ds1-6+b1 [1148 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libnewmat10ldbl amd64 1.10.4-8 [147 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 libnewmat10-dev amd64 1.10.4-8 [140 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 scons all 4.4.0+dfsg-1 [663 kB] Fetched 53.0 MB in 1s (70.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. 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Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20346 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... 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Setting up libboost-python1.74.0 (1.74.0+ds1-20) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ... Setting up libsz2:amd64 (1.0.6-1+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libann-cctbx-dev (1.1.2+doc-9+b1) ... Setting up libccp4f0:amd64 (8.0.0-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libccp4-dev:amd64 (8.0.0-2) ... Setting up libtool (2.4.7-5) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libcurl4:amd64 (7.88.1-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libhdf5-103-1:amd64 (1.10.8+repack1-1) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libpython3.11:amd64 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up libcbf1:amd64 (0.9.7+dfsg1-2+b2) ... Setting up libpython3.11-dev:amd64 (3.11.2-6) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-2) ... Setting up libcctbx0 (2022.9+ds2+~3.11.2+ds1-6+b1) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3.11-dev (3.11.2-6) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up scons (4.4.0+dfsg-1) ... Setting up libboost-python1.74-dev (1.74.0+ds1-20) ... Setting up libboost-python-dev (1.74.0.3) ... Setting up libcctbx-dev (2022.9+ds2+~3.11.2+ds1-6+b1) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... usrmerge is already the newest version (35). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/4073567/tmp/hooks/A99_set_merged_usr starting Re-configuring usrmerge... removed '/etc/unsupported-skip-usrmerge-conversion' The system has been successfully converted. I: user script /srv/workspace/pbuilder/4073567/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/libobjcryst-2022.1.4+ds1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libobjcryst_2022.1.4+ds1-2_source.changes dpkg-buildpackage: info: source package libobjcryst dpkg-buildpackage: info: source version 2022.1.4+ds1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Stefano Rivera dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/libobjcryst-2022.1.4+ds1' dh_auto_clean rm -f -r .sconsign.dblite debian/objcryst sconscript.local site_scons/gitarchive.cfg rm -f examples/objcryst_test find . -name "*.pyc" -delete make[1]: Leaving directory '/build/libobjcryst-2022.1.4+ds1' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_auto_install make[1]: Entering directory '/build/libobjcryst-2022.1.4+ds1' mkdir -p debian/objcryst/usr/ LIBRARY_PATH="/usr/lib/x86_64-linux-gnu/" scons -Q build=debug prefix=. with_shared_cctbx=1 install g++ -o debian/objcryst/usr/ObjCryst/Quirks/VFNDebug.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/Quirks/VFNDebug.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/Atom.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/Atom.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/CIF.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/CIF.cpp debian/objcryst/usr/ObjCryst/ObjCryst/CIF.cpp: In function 'ObjCryst::Crystal* ObjCryst::CreateCrystalFromCIF(CIF&, bool, bool, bool, bool, Crystal*)': debian/objcryst/usr/ObjCryst/ObjCryst/CIF.cpp:1045:16: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] 1045 | catch(exception) | ^~~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/CIF.cpp:1066:16: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] 1066 | catch(exception) | ^~~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/CIF.cpp:1088:16: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] 1088 | catch(exception) | ^~~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/CIF.cpp:1138:22: warning: catching polymorphic type 'class std::invalid_argument' by value [-Wcatch-value=] 1138 | catch(invalid_argument) | ^~~~~~~~~~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/CIF.cpp:1176:29: warning: catching polymorphic type 'class cctbx::error' by value [-Wcatch-value=] 1176 | catch(cctbx::error) | ^~~~~ g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/Crystal.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/Crystal.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/DiffractionDataSingleCrystal.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/DiffractionDataSingleCrystal.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/Exception.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/Exception.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/IO.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/IO.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/Indexing.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/Indexing.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/Molecule.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/Molecule.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/PDF.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/PDF.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/Polyhedron.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/Polyhedron.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/PowderPattern.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/PowderPattern.cpp debian/objcryst/usr/ObjCryst/ObjCryst/PowderPattern.cpp: In function 'std::vector ObjCryst::spgExtinctionFingerprint(Crystal&, const cctbx::sgtbx::space_group&)': debian/objcryst/usr/ObjCryst/ObjCryst/PowderPattern.cpp:6853:17: warning: comparison of integer expressions of different signedness: 'long int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6853 | if(i>=fingerprint.size()) cout<<"WHOOOOOOOOOOOOOPS"< ObjCryst::ScatteringPowerAtom::GetResonantScattFactReal(const ObjCryst::ScatteringData&, int) const': debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.cpp:696:23: warning: catching polymorphic type 'class cctbx::error' by value [-Wcatch-value=] 696 | catch(cctbx::error) | ^~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.cpp: In member function 'virtual CrystMatrix ObjCryst::ScatteringPowerAtom::GetResonantScattFactImag(const ObjCryst::ScatteringData&, int) const': debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.cpp:740:23: warning: catching polymorphic type 'class cctbx::error' by value [-Wcatch-value=] 740 | catch(cctbx::error) | ^~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.cpp: In member function 'std::string ObjCryst::ScatteringPowerAtom::GetElementName() const': debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.cpp:777:17: warning: catching polymorphic type 'class cctbx::error' by value [-Wcatch-value=] 777 | catch(cctbx::error) | ^~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.cpp: In member function 'void ObjCryst::ScatteringPowerAtom::InitAtNeutronScattCoeffs()': debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.cpp:810:17: warning: catching polymorphic type 'class cctbx::error' by value [-Wcatch-value=] 810 | catch(cctbx::error) | ^~~~~ g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPowerSphere.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPowerSphere.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/SpaceGroup.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/SpaceGroup.cpp debian/objcryst/usr/ObjCryst/ObjCryst/SpaceGroup.cpp: In member function 'void ObjCryst::SpaceGroup::InitSpaceGroup(const std::string&)': debian/objcryst/usr/ObjCryst/ObjCryst/SpaceGroup.cpp:591:20: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] 591 | catch(exception ex1) | ^~~ debian/objcryst/usr/ObjCryst/ObjCryst/SpaceGroup.cpp:602:23: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] 602 | catch(exception ex2) | ^~~ debian/objcryst/usr/ObjCryst/ObjCryst/SpaceGroup.cpp:647:20: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] 647 | catch(exception ex) | ^~ g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/UnitCell.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/UnitCell.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/ZScatterer.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/ZScatterer.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_001.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_001.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_002.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_002.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_067.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_067.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_097.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_097.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_230.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_230.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_centro.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_centro.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/test.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/test.cpp g++ -o debian/objcryst/usr/ObjCryst/RefinableObj/GlobalOptimObj.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/RefinableObj/GlobalOptimObj.cpp debian/objcryst/usr/ObjCryst/RefinableObj/GlobalOptimObj.cpp: In member function 'virtual void ObjCryst::MonteCarloObj::MultiRunOptimize(long int&, long int&, bool, double, double)': debian/objcryst/usr/ObjCryst/RefinableObj/GlobalOptimObj.cpp:847:44: warning: '%f' directive writing between 3 and 317 bytes into a region of size between 0 and 18 [-Wformat-overflow=] 847 | sprintf(costAsChar,"-Run#%ld-Cost-%f",abs(nbCycle),this->GetLogLikelihood()); | ^~ debian/objcryst/usr/ObjCryst/RefinableObj/GlobalOptimObj.cpp:847:29: note: assuming directive output of 8 bytes 847 | sprintf(costAsChar,"-Run#%ld-Cost-%f",abs(nbCycle),this->GetLogLikelihood()); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:906, from /usr/include/c++/12/cstdio:42, from /usr/include/c++/12/ext/string_conversions.h:43, from /usr/include/c++/12/bits/basic_string.h:3960, from /usr/include/c++/12/string:53, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/iomanip:40, from debian/objcryst/usr/ObjCryst/RefinableObj/GlobalOptimObj.cpp:23: In function 'int sprintf(char*, const char*, ...)', inlined from 'virtual void ObjCryst::MonteCarloObj::MultiRunOptimize(long int&, long int&, bool, double, double)' at debian/objcryst/usr/ObjCryst/RefinableObj/GlobalOptimObj.cpp:847:17: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 16 and 348 bytes into a destination of size 30 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -o debian/objcryst/usr/ObjCryst/RefinableObj/IO.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/RefinableObj/IO.cpp g++ -o debian/objcryst/usr/ObjCryst/RefinableObj/LSQNumObj.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/RefinableObj/LSQNumObj.cpp g++ -o debian/objcryst/usr/ObjCryst/RefinableObj/RefinableObj.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/RefinableObj/RefinableObj.cpp g++ -o debian/objcryst/usr/ObjCryst/RefinableObj/Simplex.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/RefinableObj/Simplex.cpp g++ -o debian/objcryst/usr/ObjCryst/RefinableObj/Tracker.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/RefinableObj/Tracker.cpp g++ -o debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp: In instantiation of 'void CrystVector::operator*=(T) [with T = bool]': debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp:1054:16: required from here debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp:221:41: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 221 | for(int i=mNumElements;i>0;i--) *p++ *= num; | ~~~~~^~~~~~ debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp: In instantiation of 'void CrystVector::operator*=(const CrystVector&) [with T = bool]': debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp:1054:16: required from here debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp:238:44: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 238 | for(int i=mNumElements;i>0;i--) { *p *= *rhs; p++ ; rhs++;} | ~~~^~~~~~~ debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp:243:44: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 243 | for(int i=mNumElements;i>0;i--) { *p *= *p; p++ ;} | ~~~^~~~~ debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp: In instantiation of 'void CrystVector::operator/=(T) [with T = bool]': debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp:1054:16: required from here debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp:251:41: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 251 | for(int i=mNumElements;i>0;i--) *p++ *= d; | ~~~~~^~~~ debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp: In instantiation of 'void CrystMatrix::operator*=(T) [with T = bool]': debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp:1056:16: required from here debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp:586:41: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 586 | for(int i=0;i::operator*=(const CrystMatrix&) [with T = bool]': debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp:1056:16: required from here debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp:600:41: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 600 | for(int i=0;i'debian/objcryst/usr/libObjCryst.so.0.0.1' 'debian/objcryst/usr/libObjCryst.so'->'debian/objcryst/usr/libObjCryst.so.0.0.1' Install file: "debian/objcryst/usr/libObjCryst.so.0.0.1" as "debian/objcryst/usr/lib/libObjCryst.so.0.0.1" ldconfig -n debian/objcryst/usr/lib Install file: "debian/objcryst/usr/ObjCryst/version.h" as "debian/objcryst/usr/include/ObjCryst/version.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/Atom.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/Atom.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/CIF.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/CIF.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/Colours.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/Colours.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/Crystal.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/Crystal.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/DiffractionDataSingleCrystal.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/DiffractionDataSingleCrystal.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/General.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/General.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/GeomStructFactor.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/GeomStructFactor.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/IO.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/IO.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/Indexing.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/Indexing.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/Molecule.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/Molecule.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/PDF.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/PDF.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/Polyhedron.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/Polyhedron.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/PowderPattern.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/PowderPattern.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/PowderPatternBackgroundBayesianMinimiser.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/PowderPatternBackgroundBayesianMinimiser.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/ReflectionProfile.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/ReflectionProfile.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/Scatterer.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/Scatterer.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringCorr.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/ScatteringCorr.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringData.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/ScatteringData.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/ScatteringPower.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPowerSphere.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/ScatteringPowerSphere.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/SpaceGroup.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/SpaceGroup.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/UnitCell.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/UnitCell.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/ZScatterer.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/ZScatterer.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/test.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/test.h" Install file: "debian/objcryst/usr/ObjCryst/RefinableObj/GlobalOptimObj.h" as "debian/objcryst/usr/include/ObjCryst/RefinableObj/GlobalOptimObj.h" Install file: "debian/objcryst/usr/ObjCryst/RefinableObj/IO.h" as "debian/objcryst/usr/include/ObjCryst/RefinableObj/IO.h" Install file: "debian/objcryst/usr/ObjCryst/RefinableObj/LSQNumObj.h" as "debian/objcryst/usr/include/ObjCryst/RefinableObj/LSQNumObj.h" Install file: "debian/objcryst/usr/ObjCryst/RefinableObj/RefinableObj.h" as "debian/objcryst/usr/include/ObjCryst/RefinableObj/RefinableObj.h" Install file: "debian/objcryst/usr/ObjCryst/RefinableObj/Simplex.h" as "debian/objcryst/usr/include/ObjCryst/RefinableObj/Simplex.h" Install file: "debian/objcryst/usr/ObjCryst/RefinableObj/Tracker.h" as "debian/objcryst/usr/include/ObjCryst/RefinableObj/Tracker.h" Install file: "debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.h" as "debian/objcryst/usr/include/ObjCryst/CrystVector/CrystVector.h" Install file: "debian/objcryst/usr/ObjCryst/Quirks/VFNDebug.h" as "debian/objcryst/usr/include/ObjCryst/Quirks/VFNDebug.h" Install file: "debian/objcryst/usr/ObjCryst/Quirks/ci_string.h" as "debian/objcryst/usr/include/ObjCryst/Quirks/ci_string.h" iconv -f ISO-8859-1 -t UTF-8 debian/objcryst/usr/include/ObjCryst/ObjCryst/UnitCell.h > UnitCell.h mv UnitCell.h debian/objcryst/usr/include/ObjCryst/ObjCryst/UnitCell.h dh_installdirs dh_install dh_auto_install rm -f -r debian/objcryst/usr/newmat/ debian/objcryst/usr/cctbx/cctbx/ rm -f -r debian/objcryst/usr/ObjCryst/ debian/objcryst/usr/SConscript* rm -f -r debian/libobjcryst0/debian make[1]: Leaving directory '/build/libobjcryst-2022.1.4+ds1' dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libobjcryst0-dbgsym' in '../libobjcryst0-dbgsym_2022.1.4+ds1-2_amd64.deb'. dpkg-deb: building package 'libobjcryst0' in '../libobjcryst0_2022.1.4+ds1-2_amd64.deb'. dpkg-deb: building package 'libobjcryst-dev' in '../libobjcryst-dev_2022.1.4+ds1-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libobjcryst_2022.1.4+ds1-2_amd64.buildinfo dpkg-genchanges --build=binary -O../libobjcryst_2022.1.4+ds1-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/4073567/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/4073567/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4073567 and its subdirectories I: Current time: Tue Jun 4 19:05:06 +14 2024 I: pbuilder-time-stamp: 1717477506