I: pbuilder: network access will be disabled during build I: Current time: Mon May 20 04:23:20 -12 2024 I: pbuilder-time-stamp: 1716222200 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libccp4_8.0.0-2.dsc] I: copying [./libccp4_8.0.0.orig.tar.gz] I: copying [./libccp4_8.0.0-2.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Nov 9 00:45:37 2022 -12 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libccp4_8.0.0-2.dsc: no acceptable signature found dpkg-source: info: extracting libccp4 in libccp4-8.0.0 dpkg-source: info: unpacking libccp4_8.0.0.orig.tar.gz dpkg-source: info: unpacking libccp4_8.0.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-fix-ftbfs-with-gcc-10.patch dpkg-source: info: applying 0002-endianness.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1313251/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='4bcf8a440177404d8d1448a6bab38f6d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1313251' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.461pk2rr/pbuilderrc_Eo7o --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.461pk2rr/b1 --logfile b1/build.log libccp4_8.0.0-2.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 6.1.0-0.deb11.5-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.12-1~bpo11+1 (2023-03-05) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Feb 12 2023 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 2023 more -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/1313251/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), gfortran, libmmdb2-dev, m4 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on libmmdb2-dev; however: Package libmmdb2-dev is not installed. pbuilder-satisfydepends-dummy depends on m4; however: Package m4 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libgfortran-12-dev{a} libgfortran5{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libmmdb2-0{a} libmmdb2-dev{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 31.0 MB of archives. After unpacking 118 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b3 [687 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libgfortran-12-dev amd64 12.2.0-14 [834 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 gfortran-12 amd64 12.2.0-14 [10.2 MB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 gfortran amd64 4:12.2.0-3 [1428 B] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libmmdb2-0 amd64 2.0.22-1 [338 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libmmdb2-dev amd64 2.0.22-1 [92.9 kB] Fetched 31.0 MB in 0s (67.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../02-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../22-libelf1_0.188-2.1_amd64.deb ... Unpacking libelf1:amd64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_amd64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../24-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.1+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.1+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-12_amd64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../30-libgfortran5_12.2.0-14_amd64.deb ... Unpacking libgfortran5:amd64 (12.2.0-14) ... Selecting previously unselected package libgfortran-12-dev:amd64. Preparing to unpack .../31-libgfortran-12-dev_12.2.0-14_amd64.deb ... Unpacking libgfortran-12-dev:amd64 (12.2.0-14) ... Selecting previously unselected package gfortran-12. Preparing to unpack .../32-gfortran-12_12.2.0-14_amd64.deb ... Unpacking gfortran-12 (12.2.0-14) ... Selecting previously unselected package gfortran. Preparing to unpack .../33-gfortran_4%3a12.2.0-3_amd64.deb ... Unpacking gfortran (4:12.2.0-3) ... Selecting previously unselected package libmmdb2-0:amd64. Preparing to unpack .../34-libmmdb2-0_2.0.22-1_amd64.deb ... Unpacking libmmdb2-0:amd64 (2.0.22-1) ... Selecting previously unselected package libmmdb2-dev. Preparing to unpack .../35-libmmdb2-dev_2.0.22-1_amd64.deb ... Unpacking libmmdb2-dev (2.0.22-1) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmmdb2-0:amd64 (2.0.22-1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up libmmdb2-dev (2.0.22-1) ... Setting up autopoint (0.21-12) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.1+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libgfortran-12-dev:amd64 (12.2.0-14) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up gfortran-12 (12.2.0-14) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:12.2.0-3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/libccp4-8.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libccp4_8.0.0-2_source.changes dpkg-buildpackage: info: source package libccp4 dpkg-buildpackage: info: source version 8.0.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:125: warning: AC_OUTPUT should be used without arguments. configure.ac:125: You should run autoupdate. configure.ac:9: installing 'build-aux/compile' configure.ac:8: installing 'build-aux/missing' Makefile.am: installing 'build-aux/depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/libccp4-8.0.0' dh_auto_configure -- --disable-static --enable-shared --datadir=/usr/share/ccp4 ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --disable-static --enable-shared --datadir=/usr/share/ccp4 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for ar... ar checking the archiver (ar) interface... ar checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gcc... (cached) gcc checking whether the compiler supports GNU C... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to enable C11 features... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... gfortran checking whether the compiler supports GNU Fortran 77... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for m4... /usr/bin/m4 configure: fortran/unix.m4 will be processed with m4 -D_gfort=1 checking for library containing cos... -lm checking for MMDB_CCIF_Init in -lmmdb2... yes checking whether Fortran 77 compiler accepts -fallow-argument-mismatch... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating ccp4c.pc config.status: creating ccp4f.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/build/libccp4-8.0.0' dh_auto_build make -j16 make[1]: Entering directory '/build/libccp4-8.0.0' m4 -D_gfort=1 fortran/unix.m4 > fortran/unix.f make all-am make[2]: Entering directory '/build/libccp4-8.0.0' /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_array.lo ccp4/ccp4_array.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_data.lo ccp4/cmap_data.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmtzlib.lo ccp4/cmtzlib.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_general.lo ccp4/ccp4_general.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_header.lo ccp4/cmap_header.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/csymlib.lo ccp4/csymlib.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_parser.lo ccp4/ccp4_parser.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_labels.lo ccp4/cmap_labels.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cvecmat.lo ccp4/cvecmat.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_program.lo ccp4/ccp4_program.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_open.lo ccp4/cmap_open.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/library_err.lo ccp4/library_err.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_unitcell.lo ccp4/ccp4_unitcell.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_skew.lo ccp4/cmap_skew.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/library_file.lo ccp4/library_file.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_accessor.lo ccp4/cmap_accessor.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_array.c -fPIC -DPIC -o ccp4/.libs/ccp4_array.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_general.c -fPIC -DPIC -o ccp4/.libs/ccp4_general.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_header.c -fPIC -DPIC -o ccp4/.libs/cmap_header.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_unitcell.c -fPIC -DPIC -o ccp4/.libs/ccp4_unitcell.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/csymlib.c -fPIC -DPIC -o ccp4/.libs/csymlib.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cvecmat.c -fPIC -DPIC -o ccp4/.libs/cvecmat.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_data.c -fPIC -DPIC -o ccp4/.libs/cmap_data.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_open.c -fPIC -DPIC -o ccp4/.libs/cmap_open.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_parser.c -fPIC -DPIC -o ccp4/.libs/ccp4_parser.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmtzlib.c -fPIC -DPIC -o ccp4/.libs/cmtzlib.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/library_err.c -fPIC -DPIC -o ccp4/.libs/library_err.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_program.c -fPIC -DPIC -o ccp4/.libs/ccp4_program.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_labels.c -fPIC -DPIC -o ccp4/.libs/cmap_labels.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_accessor.c -fPIC -DPIC -o ccp4/.libs/cmap_accessor.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_skew.c -fPIC -DPIC -o ccp4/.libs/cmap_skew.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/library_file.c -fPIC -DPIC -o ccp4/.libs/library_file.o ccp4/library_err.c: In function 'CFile_Perror': ccp4/library_err.c:247:26: warning: comparison between pointer and zero character constant [-Wpointer-compare] 247 | if (msg == NULL || msg == '\0') colon = ""; | ^~ ccp4/library_err.c:247:22: note: did you mean to dereference the pointer? 247 | if (msg == NULL || msg == '\0') colon = ""; | ^ ccp4/ccp4_program.c: In function 'ccp4_vers_no': ccp4/ccp4_program.c:68:12: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 68 | fgets(ccp4version,MAXLEN_PROGVERSION,cfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_stats.lo ccp4/cmap_stats.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/library_utils.lo ccp4/library_utils.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_close.lo ccp4/cmap_close.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_symop.lo ccp4/cmap_symop.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/pack_c.lo ccp4/pack_c.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_diskio_f.lo `test -f 'fortran/ccp4_diskio_f.c' || echo './'`fortran/ccp4_diskio_f.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_parser_f.lo `test -f 'fortran/ccp4_parser_f.c' || echo './'`fortran/ccp4_parser_f.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-cmaplib_f.lo `test -f 'fortran/cmaplib_f.c' || echo './'`fortran/cmaplib_f.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-csymlib_f.lo `test -f 'fortran/csymlib_f.c' || echo './'`fortran/csymlib_f.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_general_f.lo `test -f 'fortran/ccp4_general_f.c' || echo './'`fortran/ccp4_general_f.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_stats.c -fPIC -DPIC -o ccp4/.libs/cmap_stats.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_unitcell_f.lo `test -f 'fortran/ccp4_unitcell_f.c' || echo './'`fortran/ccp4_unitcell_f.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_close.c -fPIC -DPIC -o ccp4/.libs/cmap_close.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/library_utils.c -fPIC -DPIC -o ccp4/.libs/library_utils.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_symop.c -fPIC -DPIC -o ccp4/.libs/cmap_symop.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/pack_c.c -fPIC -DPIC -o ccp4/.libs/pack_c.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_diskio_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_diskio_f.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_parser_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_parser_f.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/cmaplib_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-cmaplib_f.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-cmtzlib_f.lo `test -f 'fortran/cmtzlib_f.c' || echo './'`fortran/cmtzlib_f.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/csymlib_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-csymlib_f.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_general_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_general_f.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-library_f.lo `test -f 'fortran/library_f.c' || echo './'`fortran/library_f.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_unitcell_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_unitcell_f.o /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -fallow-argument-mismatch -c -o fortran/ccplib.lo fortran/ccplib.f fortran/ccp4_unitcell_f.c: In function 'ccp4uc_f_orthu_to_fracu_': fortran/ccp4_unitcell_f.c:124:3: warning: 'ccp4uc_orthu_to_fracu' reading 48 bytes from a region of size 24 [-Wstringop-overread] 124 | ccp4uc_orthu_to_fracu((const double (*)[3])rf_cmat, duo, duf); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fortran/ccp4_unitcell_f.c:124:3: note: referencing argument 2 of type 'const double[6]' fortran/ccp4_unitcell_f.c:124:3: warning: 'ccp4uc_orthu_to_fracu' accessing 48 bytes in a region of size 24 [-Wstringop-overflow=] fortran/ccp4_unitcell_f.c:124:3: note: referencing argument 3 of type 'double[6]' In file included from fortran/ccp4_unitcell_f.c:26: ./ccp4/ccp4_unitcell.h:77:6: note: in a call to function 'ccp4uc_orthu_to_fracu' 77 | void ccp4uc_orthu_to_fracu(const double rf[3][3], const double uo[6], double uf[6]); | ^~~~~~~~~~~~~~~~~~~~~ fortran/ccp4_unitcell_f.c: In function 'ccp4uc_f_fracu_to_orthu_': fortran/ccp4_unitcell_f.c:143:3: warning: 'ccp4uc_orthu_to_fracu' reading 48 bytes from a region of size 24 [-Wstringop-overread] 143 | ccp4uc_orthu_to_fracu((const double (*)[3])ro_cmat, duf, duo); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fortran/ccp4_unitcell_f.c:143:3: note: referencing argument 2 of type 'const double[6]' fortran/ccp4_unitcell_f.c:143:3: warning: 'ccp4uc_orthu_to_fracu' accessing 48 bytes in a region of size 24 [-Wstringop-overflow=] fortran/ccp4_unitcell_f.c:143:3: note: referencing argument 3 of type 'double[6]' ./ccp4/ccp4_unitcell.h:77:6: note: in a call to function 'ccp4uc_orthu_to_fracu' 77 | void ccp4uc_orthu_to_fracu(const double rf[3][3], const double uo[6], double uf[6]); | ^~~~~~~~~~~~~~~~~~~~~ /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -fallow-argument-mismatch -c -o fortran/fftlib.lo fortran/fftlib.f /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -fallow-argument-mismatch -c -o fortran/modlib.lo fortran/modlib.f fortran/ccp4_unitcell_f.c: In function 'ccp4uc_f_orthu_to_fracu_': fortran/ccp4_unitcell_f.c:124:3: warning: 'ccp4uc_orthu_to_fracu' reading 48 bytes from a region of size 24 [-Wstringop-overread] 124 | ccp4uc_orthu_to_fracu((const double (*)[3])rf_cmat, duo, duf); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fortran/ccp4_unitcell_f.c:124:3: note: referencing argument 2 of type 'const double[6]' fortran/ccp4_unitcell_f.c:124:3: warning: 'ccp4uc_orthu_to_fracu' accessing 48 bytes in a region of size 24 [-Wstringop-overflow=] fortran/ccp4_unitcell_f.c:124:3: note: referencing argument 3 of type 'double[6]' ./ccp4/ccp4_unitcell.h:77:6: note: in a call to function 'ccp4uc_orthu_to_fracu' 77 | void ccp4uc_orthu_to_fracu(const double rf[3][3], const double uo[6], double uf[6]); | ^~~~~~~~~~~~~~~~~~~~~ /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -fallow-argument-mismatch -c -o fortran/parser.lo fortran/parser.f fortran/ccp4_unitcell_f.c:124:3: warning: 'ccp4uc_orthu_to_fracu' reading 48 bytes from a region of size 24 [-Wstringop-overread] 124 | ccp4uc_orthu_to_fracu((const double (*)[3])rf_cmat, duo, duf); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fortran/ccp4_unitcell_f.c:124:3: note: referencing argument 2 of type 'const double[6]' fortran/ccp4_unitcell_f.c:124:3: warning: 'ccp4uc_orthu_to_fracu' accessing 48 bytes in a region of size 24 [-Wstringop-overflow=] fortran/ccp4_unitcell_f.c:124:3: note: referencing argument 3 of type 'double[6]' ./ccp4/ccp4_unitcell.h:77:6: note: in a call to function 'ccp4uc_orthu_to_fracu' 77 | void ccp4uc_orthu_to_fracu(const double rf[3][3], const double uo[6], double uf[6]); | ^~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/cmtzlib_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-cmtzlib_f.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/library_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-library_f.o /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -fallow-argument-mismatch -c -o fortran/rwbrook.lo fortran/rwbrook.f /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -fallow-argument-mismatch -c -o fortran/libhtml.lo fortran/libhtml.f libtool: compile: gfortran -fno-second-underscore -fallow-argument-mismatch -c fortran/ccplib.f -fPIC -o fortran/.libs/ccplib.o /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -fallow-argument-mismatch -c -o fortran/keyparse.lo fortran/keyparse.f /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -fallow-argument-mismatch -c -o fortran/dna_output.lo fortran/dna_output.f fortran/cmtzlib_f.c: In function 'lrhist_': fortran/cmtzlib_f.c:279:43: warning: passing argument 2 of 'ccp4_lrhist' from incompatible pointer type [-Wincompatible-pointer-types] 279 | *nlines = ccp4_lrhist(mtzdata[*mindx-1], hstrng, *nlines); | ^~~~~~ | | | fpstr {aka char *} In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:668:38: note: expected 'char (*)[80]' but argument is of type 'fpstr' {aka 'char *'} 668 | int ccp4_lrhist(const MTZ *mtz, char history[][MTZRECORDLENGTH], int nlines); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lkyin_': fortran/cmtzlib_f.c:636:31: warning: passing argument 2 of 'MtzParseLabin' from incompatible pointer type [-Wincompatible-pointer-types] 636 | if (MtzParseLabin(temp_name,label,*nlprgi,user_label_in[*mindx-1]) == -1) | ^~~~~ | | | char * ./ccp4/cmtzlib.h:738:48: note: expected 'const char (*)[31]' but argument is of type 'char *' 738 | int MtzParseLabin(char *labin_line, const char prog_labels[][31], | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lkyout_': fortran/cmtzlib_f.c:690:31: warning: passing argument 2 of 'MtzParseLabin' from incompatible pointer type [-Wincompatible-pointer-types] 690 | if (MtzParseLabin(temp_name,label,*nlprgo,user_label_out[*mindx-1]) == -1) | ^~~~~ | | | char * fortran/ccplib.f:1039:72: 1039 | 10 IARR1(J)=IARR2(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/ccplib.f:1064:72: 1064 | 10 ARR1(J)=ARR2(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) ./ccp4/cmtzlib.h:738:48: note: expected 'const char (*)[31]' but argument is of type 'char *' 738 | int MtzParseLabin(char *labin_line, const char prog_labels[][31], | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lkyset_': fortran/cmtzlib_f.c:735:31: warning: passing argument 2 of 'MtzParseLabin' from incompatible pointer type [-Wincompatible-pointer-types] 735 | if (MtzParseLabin(temp_name,label,*nlprgi,user_lab) == -1) | ^~~~~ | | | char * ./ccp4/cmtzlib.h:738:48: note: expected 'const char (*)[31]' but argument is of type 'char *' 738 | int MtzParseLabin(char *labin_line, const char prog_labels[][31], | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c:735:45: warning: passing argument 4 of 'MtzParseLabin' from incompatible pointer type [-Wincompatible-pointer-types] 735 | if (MtzParseLabin(temp_name,label,*nlprgi,user_lab) == -1) | ^~~~~~~~ | | | char * ./ccp4/cmtzlib.h:739:35: note: expected 'char (*)[2][31]' but argument is of type 'char *' 739 | const int nlprgi, char user_labels[][2][31]); | ~~~~~^~~~~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lrassn_': fortran/cmtzlib_f.c:834:44: warning: passing argument 2 of 'ccp4_lrassn' from incompatible pointer type [-Wincompatible-pointer-types] 834 | colarray = ccp4_lrassn(mtzdata[*mindx-1],label,*nlprgi,type); | ^~~~~ | | | char * ./ccp4/cmtzlib.h:754:49: note: expected 'const char (*)[31]' but argument is of type 'char *' 754 | MTZCOL **ccp4_lrassn(const MTZ *mtz, const char labels[][31], const int nlabels, | ~~~~~~~~~~~^~~~~~~~~~~~ fortran/cmtzlib_f.c:834:58: warning: passing argument 4 of 'ccp4_lrassn' from incompatible pointer type [-Wincompatible-pointer-types] 834 | colarray = ccp4_lrassn(mtzdata[*mindx-1],label,*nlprgi,type); | ^~~~ | | | char * ./ccp4/cmtzlib.h:755:22: note: expected 'char (*)[3]' but argument is of type 'char *' 755 | char types[][3]); | ~~~~~^~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lrreff_': fortran/cmtzlib_f.c:1214:23: warning: passing argument 5 of 'ccp4_lrreff' from incompatible pointer type [-Wincompatible-pointer-types] 1214 | collookup[mindex-1], ndatmss[mindex-1], irref[mindex-1]); | ~~~~~~~~~^~~~~~~~~~ | | | MTZCOL ** ./ccp4/cmtzlib.h:808:31: note: expected 'const MTZCOL **' but argument is of type 'MTZCOL **' 808 | const MTZCOL *lookup[], const int ncols, const int iref); | ~~~~~~~~~~~~~~^~~~~~~~ fortran/cmtzlib_f.c: In function 'lwhist_': fortran/cmtzlib_f.c:1811:35: warning: passing argument 2 of 'MtzAddHistory' from incompatible pointer type [-Wincompatible-pointer-types] 1811 | MtzAddHistory(mtzdata[*mindx-1], hstrng, *nlines); | ^~~~~~ | | | fpstr {aka char *} ./ccp4/cmtzlib.h:875:40: note: expected 'const char (*)[80]' but argument is of type 'fpstr' {aka 'char *'} 875 | int MtzAddHistory(MTZ *mtz, const char history[][MTZRECORDLENGTH], const int nlines); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lwhstl_': fortran/cmtzlib_f.c:1863:35: warning: passing argument 2 of 'MtzAddHistory' from incompatible pointer type [-Wincompatible-pointer-types] 1863 | MtzAddHistory(mtzdata[*mindx-1], hline, 1); | ^~~~~ | | | char * ./ccp4/cmtzlib.h:875:40: note: expected 'const char (*)[80]' but argument is of type 'char *' 875 | int MtzAddHistory(MTZ *mtz, const char history[][MTZRECORDLENGTH], const int nlines); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ fortran/ccplib.f:1834:72: 1834 | 10 ARR1(J)=0 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/ccplib.f:1856:72: 1856 | 10 IARR1(J)=0 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/ccplib.f:1879:72: 1879 | 10 ARR1(J)=0.0 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/cmtzlib_f.c: In function 'lwassn_': fortran/cmtzlib_f.c:2436:46: warning: passing argument 2 of 'ccp4_lwassn' from incompatible pointer type [-Wincompatible-pointer-types] 2436 | colarray = ccp4_lwassn(mtzdata[*mindx-1],label,*nlprgo,type,*iappnd); | ^~~~~ | | | char * ./ccp4/cmtzlib.h:935:43: note: expected 'const char (*)[31]' but argument is of type 'char *' 935 | MTZCOL **ccp4_lwassn(MTZ *mtz, const char labels[][31], const int nlabels, | ~~~~~~~~~~~^~~~~~~~~~~~ fortran/cmtzlib_f.c:2436:60: warning: passing argument 4 of 'ccp4_lwassn' from incompatible pointer type [-Wincompatible-pointer-types] 2436 | colarray = ccp4_lwassn(mtzdata[*mindx-1],label,*nlprgo,type,*iappnd); | ^~~~ | | | char * ./ccp4/cmtzlib.h:936:25: note: expected 'const char (*)[3]' but argument is of type 'char *' 936 | const char types[][3], const int iappnd); | ~~~~~~~~~~~^~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lwclab_': fortran/cmtzlib_f.c:2514:44: warning: passing argument 2 of 'ccp4_lwassn' from incompatible pointer type [-Wincompatible-pointer-types] 2514 | colarray = ccp4_lwassn(mtzdata[*mindx-1],label,*nlprgo,type,*iappnd); | ^~~~~ | | | char * ./ccp4/cmtzlib.h:935:43: note: expected 'const char (*)[31]' but argument is of type 'char *' 935 | MTZCOL **ccp4_lwassn(MTZ *mtz, const char labels[][31], const int nlabels, | ~~~~~~~~~~~^~~~~~~~~~~~ fortran/cmtzlib_f.c:2514:58: warning: passing argument 4 of 'ccp4_lwassn' from incompatible pointer type [-Wincompatible-pointer-types] 2514 | colarray = ccp4_lwassn(mtzdata[*mindx-1],label,*nlprgo,type,*iappnd); | ^~~~ | | | char * ./ccp4/cmtzlib.h:936:25: note: expected 'const char (*)[3]' but argument is of type 'char *' 936 | const char types[][3], const int iappnd); | ~~~~~~~~~~~^~~~~~~~~~ libtool: compile: gfortran -fno-second-underscore -fallow-argument-mismatch -c fortran/parser.f -fPIC -o fortran/.libs/parser.o libtool: compile: gfortran -fno-second-underscore -fallow-argument-mismatch -c fortran/fftlib.f -fPIC -o fortran/.libs/fftlib.o libtool: compile: gfortran -fno-second-underscore -fallow-argument-mismatch -c fortran/modlib.f -fPIC -o fortran/.libs/modlib.o fortran/modlib.f:256:72: 256 | DO 100 I = 1, P | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) fortran/modlib.f:258:72: 258 | DO 100 K = 1, R | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) fortran/modlib.f:259:72: 259 | DO 100 J = 1, Q | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) fortran/modlib.f:263:72: 263 | 100 D(I,L) = D(I,L) + A(I,J) * B(J,K) * C(K,L) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) libtool: compile: gfortran -fno-second-underscore -fallow-argument-mismatch -c fortran/rwbrook.f -fPIC -o fortran/.libs/rwbrook.o /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -fallow-argument-mismatch -c -o fortran/pack_f.lo fortran/pack_f.f fortran/modlib.f:749:72: 749 | IF (M-2) 30,10,20 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/fftlib.f:1252:72: 1252 | IF (K-I) 90,130,100 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) libtool: compile: gfortran -fno-second-underscore -fallow-argument-mismatch -c fortran/libhtml.f -fPIC -o fortran/.libs/libhtml.o fortran/modlib.f:1386:18: 1383 | DO 20 J = 2,M | 2 ...... 1386 | A(I,J) = A(J,I) | 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) libtool: compile: gfortran -fno-second-underscore -fallow-argument-mismatch -c fortran/keyparse.f -fPIC -o fortran/.libs/keyparse.o fortran/rwbrook.f:1633:72: 1633 | DO 10 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) fortran/rwbrook.f:1651:72: 1651 | DO 20 J=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1) fortran/modlib.f:1388:16: 1383 | DO 20 J = 2,M | 2 ...... 1388 | ALPHA(J) = A(J,J) | 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/modlib.f:1388:25: 1383 | DO 20 J = 2,M | 2 ...... 1388 | ALPHA(J) = A(J,J) | 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/modlib.f:1441:20: 1440 | DO 120 I = 2,M | 2 1441 | H = ALPHA(I) | 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/modlib.f:1442:16: 1440 | DO 120 I = 2,M | 2 1441 | H = ALPHA(I) 1442 | ALPHA(I) = A(I,I) | 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/modlib.f:1442:25: 1440 | DO 120 I = 2,M | 2 1441 | H = ALPHA(I) 1442 | ALPHA(I) = A(I,I) | 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/modlib.f:1443:14: 1440 | DO 120 I = 2,M | 2 ...... 1443 | A(I,I) = H | 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/rwbrook.f:2314:72: 2314 | DO 10 J=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) fortran/rwbrook.f:2320:72: 2320 | DO 20 J=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1) libtool: compile: gfortran -fno-second-underscore -fallow-argument-mismatch -c fortran/dna_output.f -fPIC -o fortran/.libs/dna_output.o fortran/rwbrook.f:2374:72: 2374 | 1 CELLD(I) = CELL(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) fortran/rwbrook.f:2410:72: 2410 | 1 RCEL(I) = CELLAS(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) fortran/rwbrook.f:2817:72: 2817 | DO 40 J = 1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 40 at (1) /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -fallow-argument-mismatch -c -o fortran/pxxml.lo fortran/pxxml.f /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -fallow-argument-mismatch -c -o fortran/lgglib.lo fortran/lgglib.f /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -fallow-argument-mismatch -c -o fortran/plot84lib.lo fortran/plot84lib.f /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -fallow-argument-mismatch -c -o fortran/plotsubs.lo fortran/plotsubs.f libtool: compile: gfortran -fno-second-underscore -fallow-argument-mismatch -c fortran/pack_f.f -fPIC -o fortran/.libs/pack_f.o /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -fallow-argument-mismatch -c -o fortran/sorting_main.lo fortran/sorting_main.f /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -fallow-argument-mismatch -c -o fortran/unix.lo fortran/unix.f libtool: compile: gfortran -fno-second-underscore -fallow-argument-mismatch -c fortran/pxxml.f -fPIC -o fortran/.libs/pxxml.o libtool: compile: gfortran -fno-second-underscore -fallow-argument-mismatch -c fortran/lgglib.f -fPIC -o fortran/.libs/lgglib.o libtool: compile: gfortran -fno-second-underscore -fallow-argument-mismatch -c fortran/plotsubs.f -fPIC -o fortran/.libs/plotsubs.o libtool: compile: gfortran -fno-second-underscore -fallow-argument-mismatch -c fortran/plot84lib.f -fPIC -o fortran/.libs/plot84lib.o fortran/lgglib.f:43:72: 43 | 10 A(I)=CELL(I)*V(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/lgglib.f:51:72: 51 | DO 10 IJ=1,IN | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) fortran/lgglib.f:52:72: 52 | 10 A(IJ,II)=A1(II,IJ) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/lgglib.f:60:72: 60 | DO 10 IJ=1,IN | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) fortran/lgglib.f:61:72: 61 | 10 OUT(II,IJ)=A1(II,IJ)+A2(II,IJ) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/lgglib.f:80:72: 80 | 20 V(I1)=A(I,I1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1) fortran/lgglib.f:90:72: 90 | 20 VJ(I1)=A(I1,IJ) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1) fortran/lgglib.f:99:72: 99 | DO 10 I2=1,IN | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) fortran/lgglib.f:100:72: 100 | 10 A(I1,I2)=A1(I1,I2)*C | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/lgglib.f:115:72: 115 | 40 RSLT(I,IJ)=POIMULT(IN1,IM2,V1,V2) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) fortran/lgglib.f:123:72: 123 | DO 10 IJ=1,IN | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) fortran/lgglib.f:124:72: 124 | 10 OUT(II,IJ)=A1(II,IJ)-A2(II,IJ) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/lgglib.f:280:72: 280 | DO 20 IC=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1) fortran/lgglib.f:281:72: 281 | 20 SYM(IC,4,IS)=SYM(IC,4,IS)*CELL(IC) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1) fortran/lgglib.f:668:72: 668 | 10 DOSQ = DOSQ + V(I)*V(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/plotsubs.f:312:72: 312 | 1 CALL PLTDWU(X(I),Y(I)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) fortran/plotsubs.f:352:72: 352 | IF(J) 26,26,27 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/plotsubs.f:377:72: 377 | IF(J) 30,28,20 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) libtool: compile: gfortran -fno-second-underscore -fallow-argument-mismatch -c fortran/sorting_main.f -fPIC -o fortran/.libs/sorting_main.o fortran/lgglib.f:1766:72: 1766 | DO 10 I2=1,IN | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) fortran/lgglib.f:1767:72: 1767 | 10 A(I1,I2)=A1(I1,I2)*C | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/lgglib.f:1912:72: 1912 | 10 ME(J)=J | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/lgglib.f:1934:72: 1934 | 40 A(I,J) = A(I,J)*Y | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) fortran/lgglib.f:1957:72: 1957 | 66 A(K,J) = W | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 66 at (1) fortran/lgglib.f:1980:72: 1980 | 1 IF (TH(I).GT.180.) TH(I) = TH(I) - 360. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) fortran/lgglib.f:2106:72: 2106 | DO 50 J = 1, N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 50 at (1) fortran/lgglib.f:2107:72: 2107 | 50 DETA(I) = DETA(I) + ATA(I,J)*PHI(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1) fortran/lgglib.f:2116:72: 2116 | DO 10 J = I,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) fortran/lgglib.f:2117:72: 2117 | DO 10 K = 1,M | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) fortran/lgglib.f:2118:72: 2118 | 10 ATA(I,J) = ATA(I,J) + A(K,I)*A(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/lgglib.f:2121:72: 2121 | DO 20 J = 1, I-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1) fortran/lgglib.f:2122:72: 2122 | 20 ATA(I,J) = ATA(J,I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1) fortran/lgglib.f:2136:72: 2136 | 30 B1(I) = POIMULT(M, M, A(1,I), PHI) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) fortran/lgglib.f:2146:72: 2146 | DO 40 J = 1, N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 40 at (1) fortran/lgglib.f:2147:72: 2147 | 40 DETA(I) = DETA(I) + ATA(I,J)*B1(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) fortran/lgglib.f:2239:72: 2239 | DO 4 I=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 4 at (1) fortran/lgglib.f:2240:72: 2240 | 4 S(I,J) = 0.0 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) fortran/lgglib.f:2266:72: 2266 | IF(IFIELD-3) 104,104,103 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/lgglib.f:2268:72: 2268 | 103 IF(ICOL-ICOLMX) 9987,1000,1000 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/lgglib.f:2274:72: 2274 | IF (11-IFNUM) 9980,110,110 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/lgglib.f:2276:72: 2276 | 110 IF (10-IFNUM) 118,115,112 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/lgglib.f:2278:72: 2278 | 112 IF (6-IFNUM) 125,130,130 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/lgglib.f:2286:72: 2286 | IF (IFNUM-9) 122,122,9980 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/lgglib.f:2287:72: 2287 | 122 IF (IFNUM-6) 130,130,125 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/lgglib.f:2303:72: 2303 | IF (IFNUM-6) 138,138,9980 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/lgglib.f:2314:72: 2314 | IF(ICOL - ICOLMX) 151,151,1000 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/lgglib.f:2321:72: 2321 | 163 IF (ICOLMX+1-ICOL) 9980,1000,9980 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/lgglib.f:2330:72: 2330 | IF(ABS(ABS(D) - 1.0) -.0001) 1001,9985,9985 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/lgglib.f:2332:72: 2332 | IF(IFIELD - 3) 9987,1002,9987 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) libtool: compile: gfortran -fno-second-underscore -fallow-argument-mismatch -c fortran/unix.f -fPIC -o fortran/.libs/unix.o fortran/lgglib.f:3222:72: 3222 | 10 POIMULT=V1(I)*V2(I)+POIMULT | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/lgglib.f:4072:72: 4072 | DO 5 J = 1, NATM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 5 at (1) fortran/lgglib.f:4073:72: 4073 | 5 CALL ARRGIVE(3,EMT(1,I),VT((J-1)*3+1,I+3)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) fortran/lgglib.f:5842:72: 5842 | 10 C=C+V(I)*V(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/lgglib.f:1315:72: 1315 | 1 , (X(I,NATM),I=1,3) | 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:1369:72: 1369 | 1 , (X(I,NATM),I=1,3),occ(natm),bfac(natm) | 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:1429:72: 1429 | 1 , (X(I,NATM),I=1,3),occ(natm),bfac(natm) | 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:1489:72: 1489 | 1 res(natm), (X(I,NATM),I=1,3),occ(natm),bfac(natm) | 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:1546:72: 1546 | 1 , (X(I,NATM),I=1,3) | 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:1598:72: 1598 | 1 SEQ(NATM), RES(NATM), ATOM(NATM) | 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:2424:10: 2423 | do j = 1, 4 | 2 2424 | rt(j,4) = gt(4,j) | 1 Warning: Array reference at (1) out of bounds (4 > 3) in loop beginning at (2) fortran/plot84lib.f:6390:25: 6390 | CALL QWRITE(IUNITR,IREC,NRECL) | 1 ...... 12406 | CALL QWRITE(IUNIT,NBYTES,1) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(4)/INTEGER(4)). fortran/plot84lib.f:6473:24: 6449 | CALL QREAD(IUNITR,IREC,NRECL,IER) | 2 ...... 6473 | CALL QREAD(IUNITR,JJXY,4,IER) | 1 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(4)/REAL(4)). fortran/plot84lib.f:8301:22: 8301 | CALL AXIS(X,Y,HTEXT,NCHAR,AXLEN,ANGLE,FVAL,DV) | 1 Warning: Rank mismatch in argument 'label' at (1) (scalar and rank-1) fortran/plot84lib.f:10427:19: 10427 | CALL TRIPLOT(ICLEAR,1) | 1 Warning: Rank mismatch in argument 'line' at (1) (rank-1 and scalar) ccp4/cmtzlib.c: In function 'MtzPut': ccp4/cmtzlib.c:2746:27: warning: '%74s' directive writing between 74 and 80 bytes into a region of size 76 [-Wformat-overflow=] 2746 | sprintf(hdrrec,"SYMM %74s",symline); | ^~~~ ~~~~~~~ In file included from /usr/include/stdio.h:906, from ccp4/cmtzlib.c:23: In function 'sprintf', inlined from 'MtzPut' at ccp4/cmtzlib.c:2746:6: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 80 and 86 bytes into a destination of size 81 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ccp4/cmtzlib.c: In function 'MtzPut': ccp4/cmtzlib.c:2840:52: warning: '%1X' directive writing between 1 and 8 bytes into a region of size 7 [-Wformat-overflow=] 2840 | sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d","M/ISYM",mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); | ^~~ ccp4/cmtzlib.c:2840:27: note: directive argument in the range [0, 2147483647] 2840 | sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d","M/ISYM",mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'sprintf', inlined from 'MtzPut' at ccp4/cmtzlib.c:2840:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 81 and 95 bytes into a destination of size 81 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ccp4/cmtzlib.c: In function 'MtzPut': ccp4/cmtzlib.c:2842:52: warning: '%1X' directive writing between 1 and 8 bytes into a region of size 7 [-Wformat-overflow=] 2842 | sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d",mtz->xtal[i]->set[j]->col[k]->label,mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); | ^~~ ccp4/cmtzlib.c:2842:27: note: directive argument in the range [0, 2147483647] 2842 | sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d",mtz->xtal[i]->set[j]->col[k]->label,mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'sprintf', inlined from 'MtzPut' at ccp4/cmtzlib.c:2842:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 81 and 95 bytes into a destination of size 81 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/libccp4-8.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -no-undefined -Wl,-z,relro -o ccp4/libccp4c.la -rpath /usr/lib/x86_64-linux-gnu ccp4/ccp4_array.lo ccp4/cmap_data.lo ccp4/cmtzlib.lo ccp4/ccp4_general.lo ccp4/cmap_header.lo ccp4/csymlib.lo ccp4/ccp4_parser.lo ccp4/cmap_labels.lo ccp4/cvecmat.lo ccp4/ccp4_program.lo ccp4/cmap_open.lo ccp4/library_err.lo ccp4/ccp4_unitcell.lo ccp4/cmap_skew.lo ccp4/library_file.lo ccp4/cmap_accessor.lo ccp4/cmap_stats.lo ccp4/library_utils.lo ccp4/cmap_close.lo ccp4/cmap_symop.lo ccp4/pack_c.lo -lm libtool: link: gcc -shared -fPIC -DPIC ccp4/.libs/ccp4_array.o ccp4/.libs/cmap_data.o ccp4/.libs/cmtzlib.o ccp4/.libs/ccp4_general.o ccp4/.libs/cmap_header.o ccp4/.libs/csymlib.o ccp4/.libs/ccp4_parser.o ccp4/.libs/cmap_labels.o ccp4/.libs/cvecmat.o ccp4/.libs/ccp4_program.o ccp4/.libs/cmap_open.o ccp4/.libs/library_err.o ccp4/.libs/ccp4_unitcell.o ccp4/.libs/cmap_skew.o ccp4/.libs/library_file.o ccp4/.libs/cmap_accessor.o ccp4/.libs/cmap_stats.o ccp4/.libs/library_utils.o ccp4/.libs/cmap_close.o ccp4/.libs/cmap_symop.o ccp4/.libs/pack_c.o -lm -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libccp4c.so.0 -o ccp4/.libs/libccp4c.so.0.0.0 libtool: link: (cd "ccp4/.libs" && rm -f "libccp4c.so.0" && ln -s "libccp4c.so.0.0.0" "libccp4c.so.0") libtool: link: (cd "ccp4/.libs" && rm -f "libccp4c.so" && ln -s "libccp4c.so.0.0.0" "libccp4c.so") libtool: link: ( cd "ccp4/.libs" && rm -f "libccp4c.la" && ln -s "../libccp4c.la" "libccp4c.la" ) /bin/bash ./libtool --tag=F77 --mode=link gfortran -fno-second-underscore -fallow-argument-mismatch -no-undefined -Wl,-z,relro -o fortran/libccp4f.la -rpath /usr/lib/x86_64-linux-gnu fortran/libccp4f_la-ccp4_diskio_f.lo fortran/libccp4f_la-ccp4_parser_f.lo fortran/libccp4f_la-cmaplib_f.lo fortran/libccp4f_la-csymlib_f.lo fortran/libccp4f_la-ccp4_general_f.lo fortran/libccp4f_la-ccp4_unitcell_f.lo fortran/libccp4f_la-cmtzlib_f.lo fortran/libccp4f_la-library_f.lo fortran/ccplib.lo fortran/fftlib.lo fortran/modlib.lo fortran/parser.lo fortran/rwbrook.lo fortran/libhtml.lo fortran/keyparse.lo fortran/dna_output.lo fortran/pack_f.lo fortran/pxxml.lo fortran/lgglib.lo fortran/plot84lib.lo fortran/plotsubs.lo fortran/sorting_main.lo fortran/unix.lo ccp4/libccp4c.la -lmmdb2 -lm libtool: link: gfortran -shared -fPIC fortran/.libs/libccp4f_la-ccp4_diskio_f.o fortran/.libs/libccp4f_la-ccp4_parser_f.o fortran/.libs/libccp4f_la-cmaplib_f.o fortran/.libs/libccp4f_la-csymlib_f.o fortran/.libs/libccp4f_la-ccp4_general_f.o fortran/.libs/libccp4f_la-ccp4_unitcell_f.o fortran/.libs/libccp4f_la-cmtzlib_f.o fortran/.libs/libccp4f_la-library_f.o fortran/.libs/ccplib.o fortran/.libs/fftlib.o fortran/.libs/modlib.o fortran/.libs/parser.o fortran/.libs/rwbrook.o fortran/.libs/libhtml.o fortran/.libs/keyparse.o fortran/.libs/dna_output.o fortran/.libs/pack_f.o fortran/.libs/pxxml.o fortran/.libs/lgglib.o fortran/.libs/plot84lib.o fortran/.libs/plotsubs.o fortran/.libs/sorting_main.o fortran/.libs/unix.o -Wl,-rpath -Wl,/build/libccp4-8.0.0/ccp4/.libs ccp4/.libs/libccp4c.so -lmmdb2 -lm -Wl,-z -Wl,relro -Wl,-soname -Wl,libccp4f.so.0 -o fortran/.libs/libccp4f.so.0.0.0 libtool: link: (cd "fortran/.libs" && rm -f "libccp4f.so.0" && ln -s "libccp4f.so.0.0.0" "libccp4f.so.0") libtool: link: (cd "fortran/.libs" && rm -f "libccp4f.so" && ln -s "libccp4f.so.0.0.0" "libccp4f.so") libtool: link: ( cd "fortran/.libs" && rm -f "libccp4f.la" && ln -s "../libccp4f.la" "libccp4f.la" ) make[2]: Leaving directory '/build/libccp4-8.0.0' make[1]: Leaving directory '/build/libccp4-8.0.0' dh_auto_test make -j16 check "TESTSUITEFLAGS=-j16 --verbose" VERBOSE=1 make[1]: Entering directory '/build/libccp4-8.0.0' make check-am make[2]: Entering directory '/build/libccp4-8.0.0' make[2]: Leaving directory '/build/libccp4-8.0.0' make[1]: Leaving directory '/build/libccp4-8.0.0' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/libccp4-8.0.0/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/libccp4-8.0.0' make install-am make[2]: Entering directory '/build/libccp4-8.0.0' make[3]: Entering directory '/build/libccp4-8.0.0' /bin/mkdir -p '/build/libccp4-8.0.0/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c ccp4/libccp4c.la fortran/libccp4f.la '/build/libccp4-8.0.0/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c ccp4/.libs/libccp4c.so.0.0.0 /build/libccp4-8.0.0/debian/tmp/usr/lib/x86_64-linux-gnu/libccp4c.so.0.0.0 libtool: install: (cd /build/libccp4-8.0.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libccp4c.so.0.0.0 libccp4c.so.0 || { rm -f libccp4c.so.0 && ln -s libccp4c.so.0.0.0 libccp4c.so.0; }; }) libtool: install: (cd /build/libccp4-8.0.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libccp4c.so.0.0.0 libccp4c.so || { rm -f libccp4c.so && ln -s libccp4c.so.0.0.0 libccp4c.so; }; }) libtool: install: /usr/bin/install -c ccp4/.libs/libccp4c.lai /build/libccp4-8.0.0/debian/tmp/usr/lib/x86_64-linux-gnu/libccp4c.la libtool: warning: relinking 'fortran/libccp4f.la' libtool: install: (cd /build/libccp4-8.0.0; /bin/bash "/build/libccp4-8.0.0/libtool" --tag F77 --mode=relink gfortran -fno-second-underscore -fallow-argument-mismatch -no-undefined -Wl,-z,relro -o fortran/libccp4f.la -rpath /usr/lib/x86_64-linux-gnu fortran/libccp4f_la-ccp4_diskio_f.lo fortran/libccp4f_la-ccp4_parser_f.lo fortran/libccp4f_la-cmaplib_f.lo fortran/libccp4f_la-csymlib_f.lo fortran/libccp4f_la-ccp4_general_f.lo fortran/libccp4f_la-ccp4_unitcell_f.lo fortran/libccp4f_la-cmtzlib_f.lo fortran/libccp4f_la-library_f.lo fortran/ccplib.lo fortran/fftlib.lo fortran/modlib.lo fortran/parser.lo fortran/rwbrook.lo fortran/libhtml.lo fortran/keyparse.lo fortran/dna_output.lo fortran/pack_f.lo fortran/pxxml.lo fortran/lgglib.lo fortran/plot84lib.lo fortran/plotsubs.lo fortran/sorting_main.lo fortran/unix.lo ccp4/libccp4c.la -lmmdb2 -lm -inst-prefix-dir /build/libccp4-8.0.0/debian/tmp) libtool: relink: gfortran -shared -fPIC fortran/.libs/libccp4f_la-ccp4_diskio_f.o fortran/.libs/libccp4f_la-ccp4_parser_f.o fortran/.libs/libccp4f_la-cmaplib_f.o fortran/.libs/libccp4f_la-csymlib_f.o fortran/.libs/libccp4f_la-ccp4_general_f.o fortran/.libs/libccp4f_la-ccp4_unitcell_f.o fortran/.libs/libccp4f_la-cmtzlib_f.o fortran/.libs/libccp4f_la-library_f.o fortran/.libs/ccplib.o fortran/.libs/fftlib.o fortran/.libs/modlib.o fortran/.libs/parser.o fortran/.libs/rwbrook.o fortran/.libs/libhtml.o fortran/.libs/keyparse.o fortran/.libs/dna_output.o fortran/.libs/pack_f.o fortran/.libs/pxxml.o fortran/.libs/lgglib.o fortran/.libs/plot84lib.o fortran/.libs/plotsubs.o fortran/.libs/sorting_main.o fortran/.libs/unix.o -L/build/libccp4-8.0.0/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lccp4c -lmmdb2 -lm -Wl,-z -Wl,relro -Wl,-soname -Wl,libccp4f.so.0 -o fortran/.libs/libccp4f.so.0.0.0 libtool: install: /usr/bin/install -c fortran/.libs/libccp4f.so.0.0.0T /build/libccp4-8.0.0/debian/tmp/usr/lib/x86_64-linux-gnu/libccp4f.so.0.0.0 libtool: install: (cd /build/libccp4-8.0.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libccp4f.so.0.0.0 libccp4f.so.0 || { rm -f libccp4f.so.0 && ln -s libccp4f.so.0.0.0 libccp4f.so.0; }; }) libtool: install: (cd /build/libccp4-8.0.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libccp4f.so.0.0.0 libccp4f.so || { rm -f libccp4f.so && ln -s libccp4f.so.0.0.0 libccp4f.so; }; }) libtool: install: /usr/bin/install -c fortran/.libs/libccp4f.lai /build/libccp4-8.0.0/debian/tmp/usr/lib/x86_64-linux-gnu/libccp4f.la libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/libccp4-8.0.0/debian/tmp/usr/include/ccp4' /usr/bin/install -c -m 644 ccp4/ccp4_file_err.h ccp4/ccp4_program.h ccp4/ccp4_unitcell.h ccp4/cmap_errno.h ccp4/cmap_stats.h ccp4/csymlib.h ccp4/library_file.h ccp4/w32mvs.h ccp4/ccp4_fortran.h ccp4/ccp4_spg.h ccp4/ccp4_utils.h ccp4/cmap_header.h ccp4/cmaplib.h ccp4/cvecmat.h ccp4/mtzdata.h ccp4/ccp4_array.h ccp4/ccp4_general.h ccp4/ccp4_sysdep.h ccp4/ccp4_vars.h ccp4/cmap_labels.h ccp4/cmaplib_f.h ccp4/overview.h ccp4/ccp4_errno.h ccp4/ccp4_parser.h ccp4/ccp4_types.h ccp4/cmap_data.h ccp4/cmap_skew.h ccp4/cmtzlib.h ccp4/pack_c.h '/build/libccp4-8.0.0/debian/tmp/usr/include/ccp4' /bin/mkdir -p '/build/libccp4-8.0.0/debian/tmp/usr/share/ccp4' /usr/bin/install -c -m 644 ccp4-config.cmake '/build/libccp4-8.0.0/debian/tmp/usr/share/ccp4' /bin/mkdir -p '/build/libccp4-8.0.0/debian/tmp/usr/share/ccp4' /usr/bin/install -c -m 644 data/atomsf_neutron.lib data/atomsf_electron.lib data/atomsf.lib data/syminfo.lib data/symop.lib data/font84.ascii '/build/libccp4-8.0.0/debian/tmp/usr/share/ccp4' /bin/mkdir -p '/build/libccp4-8.0.0/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 ccp4c.pc ccp4f.pc '/build/libccp4-8.0.0/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[3]: Leaving directory '/build/libccp4-8.0.0' make[2]: Leaving directory '/build/libccp4-8.0.0' make[1]: Leaving directory '/build/libccp4-8.0.0' dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a debian/rules override_dh_strip make[1]: Entering directory '/build/libccp4-8.0.0' dh_strip -plibccp4c0 dh_strip -plibccp4f0 dh_strip -a -Nlibccp4c0 -Nlibccp4f0 make[1]: Leaving directory '/build/libccp4-8.0.0' dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libccp4-dev' in '../libccp4-dev_8.0.0-2_amd64.deb'. dpkg-deb: building package 'libccp4c0' in '../libccp4c0_8.0.0-2_amd64.deb'. dpkg-deb: building package 'libccp4-data' in '../libccp4-data_8.0.0-2_all.deb'. dpkg-deb: building package 'libccp4f0' in '../libccp4f0_8.0.0-2_amd64.deb'. dpkg-deb: building package 'libccp4f0-dbgsym' in '../libccp4f0-dbgsym_8.0.0-2_amd64.deb'. dpkg-deb: building package 'libccp4c0-dbgsym' in '../libccp4c0-dbgsym_8.0.0-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libccp4_8.0.0-2_amd64.buildinfo dpkg-genchanges --build=binary -O../libccp4_8.0.0-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1313251 and its subdirectories I: Current time: Mon May 20 04:25:11 -12 2024 I: pbuilder-time-stamp: 1716222311