I: pbuilder: network access will be disabled during build I: Current time: Tue Aug 20 07:08:44 -12 2024 I: pbuilder-time-stamp: 1724180924 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ffindex_0.9.9.9-6.dsc] I: copying [./ffindex_0.9.9.9.orig.tar.gz] I: copying [./ffindex_0.9.9.9-6.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Nov 3 05:15:23 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ffindex_0.9.9.9-6.dsc: no acceptable signature found dpkg-source: info: extracting ffindex in ffindex-0.9.9.9 dpkg-source: info: unpacking ffindex_0.9.9.9.orig.tar.gz dpkg-source: info: unpacking ffindex_0.9.9.9-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile.patch dpkg-source: info: applying basename.patch dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/691525/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='408fc0a6bce74d41bc7a09c07ecea8ac' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='691525' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ipx1f68z/pbuilderrc_9Q5y --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ipx1f68z/b1 --logfile b1/build.log ffindex_0.9.9.9-6.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 6.1.0-10-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.37-1 (2023-07-03) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 2023 more -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/691525/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man, libopenmpi-dev, openmpi-bin, cmake, chrpath, pkg-config dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19555 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on libopenmpi-dev; however: Package libopenmpi-dev is not installed. pbuilder-satisfydepends-dummy depends on openmpi-bin; however: Package openmpi-bin is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} chrpath{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran-12{a} groff-base{a} help2man{a} ibverbs-providers{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libbsd0{a} libcbor0.8{a} libcurl4{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a} libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a} libexpat1{a} libfabric1{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-12-dev{a} libgfortran5{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibverbs-dev{a} libibverbs1{a} libicu72{a} libjs-jquery{a} libjs-jquery-ui{a} libjsoncpp25{a} libldap-2.5-0{a} liblocale-gettext-perl{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmunge2{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpkgconf3{a} libpmix-dev{a} libpmix2{a} libproc2-0{a} libpsl5{a} libpsm-infinipath1{a} libpsm2-2{a} librdmacm1{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libucx0{a} libuv1{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} m4{a} man-db{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libcoarrays-openmpi-dev libldap-common libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget xauth 0 packages upgraded, 107 newly installed, 0 to remove and 0 not upgraded. Need to get 59.3 MB of archives. After unpacking 227 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 liblocale-gettext-perl amd64 1.07-5 [15.4 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 libcbor0.8 amd64 0.8.0-2+b1 [27.4 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libfido2-1 amd64 1.12.0-2+b1 [77.2 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 openssh-client amd64 1:9.2p1-2 [988 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 chrpath amd64 0.16-2+b1 [17.1 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 libarchive13 amd64 3.6.2-1 [343 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-10 [386 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 librhash0 amd64 1.4.3-3 [134 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libuv1 amd64 1.44.2-1 [140 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 cmake-data all 3.25.1-1 [2026 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 cmake amd64 3.25.1-1 [8692 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libgfortran-12-dev amd64 12.2.0-14 [834 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 gfortran-12 amd64 12.2.0-14 [10.2 MB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 help2man amd64 1.49.3 [198 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libnl-3-200 amd64 3.7.0-0.2+b1 [63.1 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libnl-route-3-200 amd64 3.7.0-0.2+b1 [185 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 libibverbs1 amd64 44.0-2 [60.7 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 ibverbs-providers amd64 44.0-2 [335 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libevent-2.1-7 amd64 2.1.12-stable-8 [180 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-8 [131 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libevent-extra-2.1-7 amd64 2.1.12-stable-8 [107 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-8 [53.6 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 libevent-openssl-2.1-7 amd64 2.1.12-stable-8 [60.6 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 libevent-dev amd64 2.1.12-stable-8 [305 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.2 [168 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 libpsm2-2 amd64 11.2.185-2 [180 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 librdmacm1 amd64 44.0-2 [68.6 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 libfabric1 amd64 1.17.0-3 [627 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 libhwloc15 amd64 2.9.0-1 [154 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libnuma-dev amd64 2.0.16-1 [35.0 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libltdl7 amd64 2.4.7-5 [393 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 libltdl-dev amd64 2.4.7-5 [164 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libhwloc-dev amd64 2.9.0-1 [241 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libpciaccess0 amd64 0.17-2 [51.4 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2 [292 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2 [759 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 libxnvctrl0 amd64 525.85.05-1 [13.3 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 ocl-icd-libopencl1 amd64 2.3.1-1 [43.0 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 libhwloc-plugins amd64 2.9.0-1 [17.5 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 libnl-3-dev amd64 3.7.0-0.2+b1 [104 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 libnl-route-3-dev amd64 3.7.0-0.2+b1 [203 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 libibverbs-dev amd64 44.0-2 [633 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 libmunge2 amd64 0.5.15-2 [19.5 kB] Get: 96 http://deb.debian.org/debian bookworm/main amd64 libpmix2 amd64 4.2.2-1+b1 [622 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 libucx0 amd64 1.13.1-1 [860 kB] Get: 98 http://deb.debian.org/debian bookworm/main amd64 libopenmpi3 amd64 4.1.4-3+b1 [2422 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 openmpi-common all 4.1.4-3 [167 kB] Get: 100 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 libpmix-dev amd64 4.2.2-1+b1 [902 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 openmpi-bin amd64 4.1.4-3+b1 [226 kB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 libopenmpi-dev amd64 4.1.4-3+b1 [970 kB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] Fetched 59.3 MB in 3s (18.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19555 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-5_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../001-libproc2-0_2%3a4.0.2-3_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.2-3) ... Selecting previously unselected package procps. 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Selecting previously unselected package libcbor0.8:amd64. Preparing to unpack .../015-libcbor0.8_0.8.0-2+b1_amd64.deb ... Unpacking libcbor0.8:amd64 (0.8.0-2+b1) ... Selecting previously unselected package libfido2-1:amd64. Preparing to unpack .../016-libfido2-1_1.12.0-2+b1_amd64.deb ... Unpacking libfido2-1:amd64 (1.12.0-2+b1) ... Selecting previously unselected package openssh-client. Preparing to unpack .../017-openssh-client_1%3a9.2p1-2_amd64.deb ... Unpacking openssh-client (1:9.2p1-2) ... Selecting previously unselected package m4. Preparing to unpack .../018-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../019-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../020-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. 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Unpacking libbrotli1:amd64 (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../028-libsasl2-modules-db_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../029-libsasl2-2_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../030-libldap-2.5-0_2.5.13+dfsg-5_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../031-libnghttp2-14_1.52.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.52.0-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../032-libpsl5_0.21.2-1_amd64.deb ... Unpacking libpsl5:amd64 (0.21.2-1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../033-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../034-libssh2-1_1.10.0-3+b1_amd64.deb ... Unpacking libssh2-1:amd64 (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../035-libcurl4_7.88.1-10_amd64.deb ... Unpacking libcurl4:amd64 (7.88.1-10) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../036-libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package libjsoncpp25:amd64. Preparing to unpack .../037-libjsoncpp25_1.9.5-4_amd64.deb ... Unpacking libjsoncpp25:amd64 (1.9.5-4) ... Selecting previously unselected package librhash0:amd64. Preparing to unpack .../038-librhash0_1.4.3-3_amd64.deb ... Unpacking librhash0:amd64 (1.4.3-3) ... 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Selecting previously unselected package gettext. Preparing to unpack .../051-gettext_0.21-12_amd64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../052-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../053-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../054-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../055-libgfortran5_12.2.0-14_amd64.deb ... Unpacking libgfortran5:amd64 (12.2.0-14) ... Selecting previously unselected package libgfortran-12-dev:amd64. Preparing to unpack .../056-libgfortran-12-dev_12.2.0-14_amd64.deb ... Unpacking libgfortran-12-dev:amd64 (12.2.0-14) ... Selecting previously unselected package gfortran-12. Preparing to unpack .../057-gfortran-12_12.2.0-14_amd64.deb ... Unpacking gfortran-12 (12.2.0-14) ... Selecting previously unselected package help2man. Preparing to unpack .../058-help2man_1.49.3_amd64.deb ... Unpacking help2man (1.49.3) ... Selecting previously unselected package libnl-3-200:amd64. Preparing to unpack .../059-libnl-3-200_3.7.0-0.2+b1_amd64.deb ... Unpacking libnl-3-200:amd64 (3.7.0-0.2+b1) ... Selecting previously unselected package libnl-route-3-200:amd64. Preparing to unpack .../060-libnl-route-3-200_3.7.0-0.2+b1_amd64.deb ... Unpacking libnl-route-3-200:amd64 (3.7.0-0.2+b1) ... Selecting previously unselected package libibverbs1:amd64. Preparing to unpack .../061-libibverbs1_44.0-2_amd64.deb ... Unpacking libibverbs1:amd64 (44.0-2) ... Selecting previously unselected package ibverbs-providers:amd64. Preparing to unpack .../062-ibverbs-providers_44.0-2_amd64.deb ... Unpacking ibverbs-providers:amd64 (44.0-2) ... Selecting previously unselected package libevent-2.1-7:amd64. Preparing to unpack .../063-libevent-2.1-7_2.1.12-stable-8_amd64.deb ... Unpacking libevent-2.1-7:amd64 (2.1.12-stable-8) ... Selecting previously unselected package libevent-core-2.1-7:amd64. Preparing to unpack .../064-libevent-core-2.1-7_2.1.12-stable-8_amd64.deb ... Unpacking libevent-core-2.1-7:amd64 (2.1.12-stable-8) ... Selecting previously unselected package libevent-extra-2.1-7:amd64. Preparing to unpack .../065-libevent-extra-2.1-7_2.1.12-stable-8_amd64.deb ... Unpacking libevent-extra-2.1-7:amd64 (2.1.12-stable-8) ... Selecting previously unselected package libevent-pthreads-2.1-7:amd64. Preparing to unpack .../066-libevent-pthreads-2.1-7_2.1.12-stable-8_amd64.deb ... Unpacking libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ... Selecting previously unselected package libevent-openssl-2.1-7:amd64. Preparing to unpack .../067-libevent-openssl-2.1-7_2.1.12-stable-8_amd64.deb ... Unpacking libevent-openssl-2.1-7:amd64 (2.1.12-stable-8) ... Selecting previously unselected package libevent-dev. Preparing to unpack .../068-libevent-dev_2.1.12-stable-8_amd64.deb ... Unpacking libevent-dev (2.1.12-stable-8) ... Selecting previously unselected package libpsm-infinipath1. Preparing to unpack .../069-libpsm-infinipath1_3.3+20.604758e7-6.2_amd64.deb ... Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.2) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../070-libnuma1_2.0.16-1_amd64.deb ... Unpacking libnuma1:amd64 (2.0.16-1) ... Selecting previously unselected package libpsm2-2. Preparing to unpack .../071-libpsm2-2_11.2.185-2_amd64.deb ... Unpacking libpsm2-2 (11.2.185-2) ... Selecting previously unselected package librdmacm1:amd64. Preparing to unpack .../072-librdmacm1_44.0-2_amd64.deb ... Unpacking librdmacm1:amd64 (44.0-2) ... Selecting previously unselected package libfabric1:amd64. Preparing to unpack .../073-libfabric1_1.17.0-3_amd64.deb ... Unpacking libfabric1:amd64 (1.17.0-3) ... Selecting previously unselected package libhwloc15:amd64. Preparing to unpack .../074-libhwloc15_2.9.0-1_amd64.deb ... Unpacking libhwloc15:amd64 (2.9.0-1) ... Selecting previously unselected package libnuma-dev:amd64. Preparing to unpack .../075-libnuma-dev_2.0.16-1_amd64.deb ... Unpacking libnuma-dev:amd64 (2.0.16-1) ... Selecting previously unselected package libltdl7:amd64. Preparing to unpack .../076-libltdl7_2.4.7-5_amd64.deb ... Unpacking libltdl7:amd64 (2.4.7-5) ... Selecting previously unselected package libltdl-dev:amd64. Preparing to unpack .../077-libltdl-dev_2.4.7-5_amd64.deb ... Unpacking libltdl-dev:amd64 (2.4.7-5) ... Selecting previously unselected package libhwloc-dev:amd64. Preparing to unpack .../078-libhwloc-dev_2.9.0-1_amd64.deb ... Unpacking libhwloc-dev:amd64 (2.9.0-1) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../079-libpciaccess0_0.17-2_amd64.deb ... Unpacking libpciaccess0:amd64 (0.17-2) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../080-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../081-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../082-libxcb1_1.15-1_amd64.deb ... Unpacking libxcb1:amd64 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../083-libx11-data_2%3a1.8.4-2_all.deb ... Unpacking libx11-data (2:1.8.4-2) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../084-libx11-6_2%3a1.8.4-2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.4-2) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../085-libxext6_2%3a1.3.4-1+b1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b1) ... Selecting previously unselected package libxnvctrl0:amd64. Preparing to unpack .../086-libxnvctrl0_525.85.05-1_amd64.deb ... Unpacking libxnvctrl0:amd64 (525.85.05-1) ... Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../087-ocl-icd-libopencl1_2.3.1-1_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.3.1-1) ... Selecting previously unselected package libhwloc-plugins:amd64. Preparing to unpack .../088-libhwloc-plugins_2.9.0-1_amd64.deb ... Unpacking libhwloc-plugins:amd64 (2.9.0-1) ... Selecting previously unselected package libnl-3-dev:amd64. Preparing to unpack .../089-libnl-3-dev_3.7.0-0.2+b1_amd64.deb ... Unpacking libnl-3-dev:amd64 (3.7.0-0.2+b1) ... Selecting previously unselected package libnl-route-3-dev:amd64. Preparing to unpack .../090-libnl-route-3-dev_3.7.0-0.2+b1_amd64.deb ... 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Setting up libx11-6:amd64 (2:1.8.4-2) ... Setting up libhwloc-dev:amd64 (2.9.0-1) ... Setting up libibverbs1:amd64 (44.0-2) ... Setting up ibverbs-providers:amd64 (44.0-2) ... Setting up openssh-client (1:9.2p1-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxnvctrl0:amd64 (525.85.05-1) ... Setting up libnl-route-3-dev:amd64 (3.7.0-0.2+b1) ... Setting up cmake (3.25.1-1) ... Setting up librdmacm1:amd64 (44.0-2) ... Setting up libucx0:amd64 (1.13.1-1) ... Setting up debhelper (13.11.4) ... Setting up libibverbs-dev:amd64 (44.0-2) ... Setting up libhwloc-plugins:amd64 (2.9.0-1) ... Setting up libfabric1:amd64 (1.17.0-3) ... Setting up libpmix2:amd64 (4.2.2-1+b1) ... Setting up libopenmpi3:amd64 (4.1.4-3+b1) ... Setting up libpmix-dev:amd64 (4.2.2-1+b1) ... Setting up openmpi-bin (4.1.4-3+b1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:amd64 (4.1.4-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/ffindex-0.9.9.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ffindex_0.9.9.9-6_source.changes dpkg-buildpackage: info: source package ffindex dpkg-buildpackage: info: source version 0.9.9.9-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean debian/rules:39: target 'ffindex_apply_mpi.1' given more than once in the same rule dh clean dh_auto_clean make -j16 clean make[1]: Entering directory '/build/ffindex-0.9.9.9' make -C src clean make[2]: Entering directory '/build/ffindex-0.9.9.9/src' rm -f ffindex_apply ffindex_from_fasta ffindex_get ffindex_build ffindex_modify ffindex_unpack ffindex_from_tsv ffindex_apply_mpi ffindex.o ffindex_posix_search.o ffutil.o libffindex.so libffindex.so.2.0.2 libffindex.a \ libffindex.so libffindex.so.2.0.2 libffindex.a \ ffindex_build.o ffindex_get.o ffindex_modify.o ffindex_from_fasta.o ffindex_apply_mpi.o \ ffindex_apply.o ffindex_from_tsv.o ffindex_unpack.o ffindex_posix_search.o ffindex_apply_mpi_spawn.o \ make[2]: Leaving directory '/build/ffindex-0.9.9.9/src' make[1]: Leaving directory '/build/ffindex-0.9.9.9' debian/rules override_dh_clean make[1]: Entering directory '/build/ffindex-0.9.9.9' debian/rules:39: target 'ffindex_apply_mpi.1' given more than once in the same rule rm -f ffindex_apply.1 ffindex_build.1 ffindex_from_fasta.1 ffindex_get.1 ffindex_modify.1 ffindex_unpack.1 ffindex_apply_mpi.1 ffindex_from_tsv.1 ffindex_apply_mpi.1 dh_clean make[1]: Leaving directory '/build/ffindex-0.9.9.9' debian/rules binary debian/rules:39: target 'ffindex_apply_mpi.1' given more than once in the same rule dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j16 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/ffindex-0.9.9.9' make -C src all make[2]: Entering directory '/build/ffindex-0.9.9.9/src' cc -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex.o ffindex.c cc -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex_posix_search.o ffindex_posix_search.c cc -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffutil.o ffutil.c cc -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex_from_fasta.o ffindex_from_fasta.c cc -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex_get.o ffindex_get.c cc -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex_build.o ffindex_build.c cc -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex_modify.o ffindex_modify.c cc -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex_unpack.o ffindex_unpack.c cc -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ffindex_from_tsv.o ffindex_from_tsv.c cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_MPI -c ffindex_apply_mpi.c -o ffindex_apply_mpi.o ffindex.c: In function 'ffindex_write': ffindex.c:577:3: warning: ignoring return value of 'ftruncate' declared with attribute 'warn_unused_result' [-Wunused-result] 577 | ftruncate(fileno(index_file), ftell(index_file)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ffindex.c: In function 'ffindex_insert_dir': ffindex.c:234:5: warning: '__builtin_strncpy' output may be truncated copying 255 bytes from a string of length 255 [-Wstringop-truncation] 234 | strncpy(path + input_dir_name_len, entry->d_name, NAME_MAX); | ^ cc -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,-soname,libffindex.so.2.0.2 -shared -o libffindex.so.2.0.2 ffindex.o ffindex_posix_search.o ffutil.o ar rcs libffindex.a ffindex.o ffindex_posix_search.o ffutil.o ln -sf libffindex.so.2.0.2 libffindex.so cc -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c ffindex_apply_mpi.c -o ffindex_apply.o cc -o ffindex_from_fasta ffindex_from_fasta.o -Wl,-z,relro -Wl,-z,now -L. -lffindex cc -o ffindex_get ffindex_get.o -Wl,-z,relro -Wl,-z,now -L. -lffindex cc -o ffindex_build ffindex_build.o -Wl,-z,relro -Wl,-z,now -L. -lffindex cc -o ffindex_modify ffindex_modify.o -Wl,-z,relro -Wl,-z,now -L. -lffindex cc -o ffindex_unpack ffindex_unpack.o -Wl,-z,relro -Wl,-z,now -L. -lffindex cc -o ffindex_from_tsv ffindex_from_tsv.o -Wl,-z,relro -Wl,-z,now -L. -lffindex cc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_MPI -o ffindex_apply_mpi ffindex_apply_mpi.o -Wl,-z,relro -Wl,-z,now -L. -lffindex -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi cc -g -O2 -ffile-prefix-map=/build/ffindex-0.9.9.9=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -O2 -g -fPIC -Wall -pedantic -D_GNU_SOURCE=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -o ffindex_apply ffindex_apply.o -Wl,-z,relro -Wl,-z,now -L. -lffindex make[2]: Leaving directory '/build/ffindex-0.9.9.9/src' make[1]: Leaving directory '/build/ffindex-0.9.9.9' debian/rules override_dh_auto_test make[1]: Entering directory '/build/ffindex-0.9.9.9' debian/rules:39: target 'ffindex_apply_mpi.1' given more than once in the same rule dh_auto_test -- FFINDEX_MAX_INDEX_ENTRIES=20000 check make -j16 test FFINDEX_MAX_INDEX_ENTRIES=20000 check make[2]: Entering directory '/build/ffindex-0.9.9.9' make[2]: 'test' is up to date. make -C src check make[3]: Entering directory '/build/ffindex-0.9.9.9/src' rm -f /tmp/test.data /tmp/test.ffindex LD_LIBRARY_PATH=".:" ./ffindex_build -s /tmp/test.data /tmp/test.ffindex ../test/data ../test/data2 LD_LIBRARY_PATH=".:" ./ffindex_get /tmp/test.data /tmp/test.ffindex a b foo | tee /tmp/test.out a bb fooo fooo LD_LIBRARY_PATH=".:" ./ffindex_modify -u /tmp/test.ffindex b LD_LIBRARY_PATH=".:" ./ffindex_get /tmp/test.data /tmp/test.ffindex a b foo | tee /tmp/test-unlink.out ffindex_get.c:152 ffindex_get key not found in index: b: No such file or directory a fooo fooo LD_LIBRARY_PATH=".:" ./ffindex_build -a -s /tmp/test.data /tmp/test.ffindex ../test/testfile ======== compare results ========= diff /tmp/test.out test.should diff /tmp/test-unlink.out test-unlink.should ======== error handling ========== LD_LIBRARY_PATH=".:" ./ffindex_get /tmp/test.data /tmp/test.ffindex nonexistquery b foo || echo ffindex_get.c:152 ffindex_get key not found in index: nonexistquery: No such file or directory ffindex_get.c:152 ffindex_get key not found in index: b: No such file or directory fooo fooo LD_LIBRARY_PATH=".:" ./ffindex_get /nonexist/data /tmp/test.ffindex a foo || echo /nonexist/data: No such file or directory ffindex_get.c:80 ffindex_index_db_open failed: ./ffindex_get: Invalid argument LD_LIBRARY_PATH=".:" ./ffindex_get /tmp/test.data /nonexist/index a foo || echo /nonexist/index: No such file or directory ffindex_get.c:80 ffindex_index_db_open failed: ./ffindex_get: Invalid argument make[3]: Leaving directory '/build/ffindex-0.9.9.9/src' make[2]: Leaving directory '/build/ffindex-0.9.9.9' make[1]: Leaving directory '/build/ffindex-0.9.9.9' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j16 install DESTDIR=/build/ffindex-0.9.9.9/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/ffindex-0.9.9.9' make -C src install make[2]: Entering directory '/build/ffindex-0.9.9.9/src' mkdir -p /build/ffindex-0.9.9.9/debian/tmp/usr/bin mkdir -p /build/ffindex-0.9.9.9/debian/tmp/usr/lib mkdir -p /build/ffindex-0.9.9.9/debian/tmp/usr/include install ffindex_get /build/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_get install ffindex_build /build/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_build install ffindex_modify /build/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_modify install ffindex_from_fasta /build/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_from_fasta install ffindex_from_tsv /build/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_from_tsv install ffindex_apply /build/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_apply install ffindex_unpack /build/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_unpack install libffindex.so.2.0.2 /build/ffindex-0.9.9.9/debian/tmp/usr/lib/libffindex.so.2.0.2 install libffindex.a /build/ffindex-0.9.9.9/debian/tmp/usr/lib/libffindex.a ln -sf libffindex.so.2.0.2 /build/ffindex-0.9.9.9/debian/tmp/usr/lib/libffindex.so.0 ln -sf libffindex.so.2.0.2 /build/ffindex-0.9.9.9/debian/tmp/usr/lib/libffindex.so install ffindex.h /build/ffindex-0.9.9.9/debian/tmp/usr/include/ffindex.h install ffutil.h /build/ffindex-0.9.9.9/debian/tmp/usr/include/ffutil.h install ffindex_posix_search.h /build/ffindex-0.9.9.9/debian/tmp/usr/include/ffindex_posix_search.h install ffindex_apply_mpi /build/ffindex-0.9.9.9/debian/tmp/usr/bin/ffindex_apply_mpi make[2]: Leaving directory '/build/ffindex-0.9.9.9/src' make[1]: Leaving directory '/build/ffindex-0.9.9.9' debian/rules override_dh_install make[1]: Entering directory '/build/ffindex-0.9.9.9' debian/rules:39: target 'ffindex_apply_mpi.1' given more than once in the same rule dh_install find debian -name ffindex_apply_mpi -exec chrpath --delete \{\} \; make[1]: Leaving directory '/build/ffindex-0.9.9.9' dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples make[1]: Entering directory '/build/ffindex-0.9.9.9' debian/rules:39: target 'ffindex_apply_mpi.1' given more than once in the same rule dh_installexamples cp -aR test /build/ffindex-0.9.9.9/debian/ffindex/usr/share/doc/ffindex/examples/; cp ./src/test.should /build/ffindex-0.9.9.9/debian/ffindex/usr/share/doc/ffindex/examples/; cp ./src/test-unlink.should /build/ffindex-0.9.9.9/debian/ffindex/usr/share/doc/ffindex/examples/; make[1]: Leaving directory '/build/ffindex-0.9.9.9' debian/rules override_dh_installman make[1]: Entering directory '/build/ffindex-0.9.9.9' debian/rules:39: target 'ffindex_apply_mpi.1' given more than once in the same rule unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_apply" --version-option="-v" 'debian/tmp/usr/bin/ffindex_apply' -o 'ffindex_apply.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_build" --version-option="-v" 'debian/tmp/usr/bin/ffindex_build' -o 'ffindex_build.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_from_fasta" --version-option="-v" 'debian/tmp/usr/bin/ffindex_from_fasta' -o 'ffindex_from_fasta.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_get" --version-option="-v" 'debian/tmp/usr/bin/ffindex_get' -o 'ffindex_get.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_modify" --version-option="-v" 'debian/tmp/usr/bin/ffindex_modify' -o 'ffindex_modify.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_unpack" --version-option="-v" 'debian/tmp/usr/bin/ffindex_unpack' -o 'ffindex_unpack.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_apply_mpi" --version-option="-v" 'debian/tmp/usr/bin/ffindex_apply_mpi' -o 'ffindex_apply_mpi.1' --include debian/man_notes.nroff unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && eval 'ffindex_apply="apply a program to each FFindex entry"; ffindex_build="build file index from files in directories"; ffindex_from_fasta="populate index from FASTA file"; ffindex_get="retrieve entries from file index"; ffindex_modify="modify file index entries"; ffindex_unpack="unpack file index entries"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)"; ffindex_from_tsv="populate index from TSV file"; ffindex_apply_mpi="apply a program to each FFindex entry (mpi enhanced)";' && help2man --no-info --no-discard-stderr '--help-option= ' -n "$ffindex_from_tsv" --version-option="-v" 'debian/tmp/usr/bin/ffindex_from_tsv' -o 'ffindex_from_tsv.1' --include debian/man_notes.nroff dh_installman make[1]: Leaving directory '/build/ffindex-0.9.9.9' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'ffindex' in '../ffindex_0.9.9.9-6_amd64.deb'. dpkg-deb: building package 'libffindex0-dev' in '../libffindex0-dev_0.9.9.9-6_amd64.deb'. dpkg-deb: building package 'ffindex-dbgsym' in '../ffindex-dbgsym_0.9.9.9-6_amd64.deb'. dpkg-deb: building package 'libffindex0-dbgsym' in '../libffindex0-dbgsym_0.9.9.9-6_amd64.deb'. dpkg-deb: building package 'libffindex0' in '../libffindex0_0.9.9.9-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../ffindex_0.9.9.9-6_amd64.buildinfo dpkg-genchanges --build=binary -O../ffindex_0.9.9.9-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/691525 and its subdirectories I: Current time: Tue Aug 20 07:10:58 -12 2024 I: pbuilder-time-stamp: 1724181058