I: pbuilder: network access will be disabled during build I: Current time: Tue May 28 02:44:14 +14 2024 I: pbuilder-time-stamp: 1716813854 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [examl_3.0.22-3.dsc] I: copying [./examl_3.0.22.orig.tar.gz] I: copying [./examl_3.0.22-3.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Jan 19 07:42:01 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./examl_3.0.22-3.dsc: no acceptable signature found dpkg-source: info: extracting examl in examl-3.0.22 dpkg-source: info: unpacking examl_3.0.22.orig.tar.gz dpkg-source: info: unpacking examl_3.0.22-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying simde I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2712733/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 May 28 02:44 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2712733/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2712733/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.15(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DIRSTACK=() DISTRIBUTION=bookworm EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=8fa17f371bda42f5923023f6a0ad7e76 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2712733 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JXM6F0KN/pbuilderrc_8a1F --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JXM6F0KN/b2 --logfile b2/build.log --extrapackages usrmerge examl_3.0.22-3.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-0.deb11.5-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.12-1~bpo11+1 (2023-03-05) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 24 2023 bash -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp -rwxr-xr-x 1 root root 125640 Jan 6 2023 dash -rwxr-xr-x 1 root root 121904 Sep 21 2022 date -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd -rwxr-xr-x 1 root root 102200 Sep 21 2022 df -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir -rwxr-xr-x 1 root root 88656 Mar 24 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 21 2022 false -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 24 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 25 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 20 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln -rwxr-xr-x 1 root root 53024 Mar 24 2023 login -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls -rwxr-xr-x 1 root root 207168 Mar 24 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 24 2023 more -rwsr-xr-x 1 root root 59704 Mar 24 2023 mount -rwxr-xr-x 1 root root 18744 Mar 24 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd lrwxrwxrwx 1 root root 4 Apr 24 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 3 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 6 2023 sed lrwxrwxrwx 1 root root 9 May 28 02:44 sh -> /bin/bash -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty -rwsr-xr-x 1 root root 72000 Mar 24 2023 su -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync -rwxr-xr-x 1 root root 531984 Apr 7 2023 tar -rwxr-xr-x 1 root root 14520 Nov 3 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch -rwxr-xr-x 1 root root 35664 Sep 21 2022 true -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 24 2023 umount -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 24 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/2712733/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libopenmpi-dev, libsimde-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libopenmpi-dev; however: Package libopenmpi-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran-12{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcbor0.8{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a} libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a} libfabric1{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-12-dev{a} libgfortran5{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibverbs-dev{a} libibverbs1{a} libicu72{a} libjs-jquery{a} libjs-jquery-ui{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmunge2{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix-dev{a} libpmix2{a} libpsm-infinipath1{a} libpsm2-2{a} librdmacm1{a} libsimde-dev{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libucx0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} m4{a} man-db{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libcoarrays-openmpi-dev libmail-sendmail-perl lynx wget xauth 0 packages upgraded, 83 newly installed, 0 to remove and 0 not upgraded. Need to get 45.8 MB of archives. After unpacking 185 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libcbor0.8 amd64 0.8.0-2+b1 [27.4 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 libfido2-1 amd64 1.12.0-2+b1 [77.2 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 openssh-client amd64 1:9.2p1-2 [988 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libgfortran-12-dev amd64 12.2.0-14 [834 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 gfortran-12 amd64 12.2.0-14 [10.2 MB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libnl-3-200 amd64 3.7.0-0.2+b1 [63.1 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libnl-route-3-200 amd64 3.7.0-0.2+b1 [185 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libibverbs1 amd64 44.0-2 [60.7 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 ibverbs-providers amd64 44.0-2 [335 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libevent-2.1-7 amd64 2.1.12-stable-8 [180 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-8 [131 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 libevent-extra-2.1-7 amd64 2.1.12-stable-8 [107 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-8 [53.6 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libevent-openssl-2.1-7 amd64 2.1.12-stable-8 [60.6 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libevent-dev amd64 2.1.12-stable-8 [305 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.2 [168 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libpsm2-2 amd64 11.2.185-2 [180 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 librdmacm1 amd64 44.0-2 [68.6 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 libfabric1 amd64 1.17.0-3 [627 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libhwloc15 amd64 2.9.0-1 [154 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libnuma-dev amd64 2.0.16-1 [35.0 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libltdl7 amd64 2.4.7-5 [393 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libltdl-dev amd64 2.4.7-5 [164 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libhwloc-dev amd64 2.9.0-1 [241 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 libpciaccess0 amd64 0.17-2 [51.4 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2 [292 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2 [759 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libxnvctrl0 amd64 525.85.05-1 [13.3 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 ocl-icd-libopencl1 amd64 2.3.1-1 [43.0 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 libhwloc-plugins amd64 2.9.0-1 [17.5 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 libnl-3-dev amd64 3.7.0-0.2+b1 [104 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 libnl-route-3-dev amd64 3.7.0-0.2+b1 [203 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 libibverbs-dev amd64 44.0-2 [633 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 libmunge2 amd64 0.5.15-2 [19.5 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 libpmix2 amd64 4.2.2-1+b1 [622 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libucx0 amd64 1.13.1-1 [860 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libopenmpi3 amd64 4.1.4-3+b1 [2422 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 openmpi-common all 4.1.4-3 [167 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libpmix-dev amd64 4.2.2-1+b1 [902 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 openmpi-bin amd64 4.1.4-3+b1 [226 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libopenmpi-dev amd64 4.1.4-3+b1 [970 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 libsimde-dev all 0.7.4~rc2-2 [377 kB] Fetched 45.8 MB in 1s (37.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. 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Unpacking libmunge2 (0.5.15-2) ... Selecting previously unselected package libpmix2:amd64. Preparing to unpack .../74-libpmix2_4.2.2-1+b1_amd64.deb ... Unpacking libpmix2:amd64 (4.2.2-1+b1) ... Selecting previously unselected package libucx0:amd64. Preparing to unpack .../75-libucx0_1.13.1-1_amd64.deb ... Unpacking libucx0:amd64 (1.13.1-1) ... Selecting previously unselected package libopenmpi3:amd64. Preparing to unpack .../76-libopenmpi3_4.1.4-3+b1_amd64.deb ... Unpacking libopenmpi3:amd64 (4.1.4-3+b1) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../77-openmpi-common_4.1.4-3_all.deb ... Unpacking openmpi-common (4.1.4-3) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../78-zlib1g-dev_1%3a1.2.13.dfsg-1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Selecting previously unselected package libpmix-dev:amd64. Preparing to unpack .../79-libpmix-dev_4.2.2-1+b1_amd64.deb ... Unpacking libpmix-dev:amd64 (4.2.2-1+b1) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../80-openmpi-bin_4.1.4-3+b1_amd64.deb ... Unpacking openmpi-bin (4.1.4-3+b1) ... Selecting previously unselected package libopenmpi-dev:amd64. Preparing to unpack .../81-libopenmpi-dev_4.1.4-3+b1_amd64.deb ... Unpacking libopenmpi-dev:amd64 (4.1.4-3+b1) ... Selecting previously unselected package libsimde-dev. Preparing to unpack .../82-libsimde-dev_0.7.4~rc2-2_all.deb ... Unpacking libsimde-dev (0.7.4~rc2-2) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up libsimde-dev (0.7.4~rc2-2) ... Setting up libpciaccess0:amd64 (0.17-2) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libcbor0.8:amd64 (0.8.0-2+b1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up libmunge2 (0.5.15-2) ... Setting up libx11-data (2:1.8.4-2) ... Setting up libhwloc15:amd64 (2.9.0-1) ... Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-8) ... Setting up libevent-2.1-7:amd64 (2.1.12-stable-8) ... Setting up autopoint (0.21-12) ... Setting up libltdl7:amd64 (2.4.7-5) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up libnuma1:amd64 (2.0.16-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up ocl-icd-libopencl1:amd64 (2.3.1-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libnl-3-200:amd64 (3.7.0-0.2+b1) ... Setting up libpsm2-2 (11.2.185-2) ... Setting up openmpi-common (4.1.4-3) ... Setting up libsub-override-perl (0.09-4) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.2) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libfido2-1:amd64 (1.12.0-2+b1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libevent-extra-2.1-7:amd64 (2.1.12-stable-8) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libedit2:amd64 (3.1-20221030-2) ... Setting up libevent-openssl-2.1-7:amd64 (2.1.12-stable-8) ... Setting up libgfortran-12-dev:amd64 (12.2.0-14) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:amd64 (2.0.16-1) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.2+b1) ... Setting up dh-autoreconf (20) ... Setting up libltdl-dev:amd64 (2.4.7-5) ... Setting up gfortran-12 (12.2.0-14) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libevent-dev (2.1.12-stable-8) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libnl-3-dev:amd64 (3.7.0-0.2+b1) ... Setting up groff-base (1.22.4-10) ... Setting up libx11-6:amd64 (2:1.8.4-2) ... Setting up libhwloc-dev:amd64 (2.9.0-1) ... Setting up libibverbs1:amd64 (44.0-2) ... Setting up ibverbs-providers:amd64 (44.0-2) ... Setting up openssh-client (1:9.2p1-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxnvctrl0:amd64 (525.85.05-1) ... Setting up libnl-route-3-dev:amd64 (3.7.0-0.2+b1) ... Setting up librdmacm1:amd64 (44.0-2) ... Setting up libucx0:amd64 (1.13.1-1) ... Setting up debhelper (13.11.4) ... Setting up libibverbs-dev:amd64 (44.0-2) ... Setting up libhwloc-plugins:amd64 (2.9.0-1) ... Setting up libfabric1:amd64 (1.17.0-3) ... Setting up libpmix2:amd64 (4.2.2-1+b1) ... Setting up libopenmpi3:amd64 (4.1.4-3+b1) ... Setting up libpmix-dev:amd64 (4.2.2-1+b1) ... Setting up openmpi-bin (4.1.4-3+b1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:amd64 (4.1.4-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... usrmerge is already the newest version (35). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/2712733/tmp/hooks/A99_set_merged_usr starting Re-configuring usrmerge... removed '/etc/unsupported-skip-usrmerge-conversion' The system has been successfully converted. I: user script /srv/workspace/pbuilder/2712733/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/examl-3.0.22/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../examl_3.0.22-3_source.changes dpkg-buildpackage: info: source package examl dpkg-buildpackage: info: source version 3.0.22-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --sourcedirectory=examl debian/rules override_dh_auto_clean make[1]: Entering directory '/build/examl-3.0.22' for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2 ; do \ dh_auto_clean -- SFX=-${SIMD} ; \ done /usr/bin/make --directory=parser -f Makefile.SSE3.gcc clean make[2]: Entering directory '/build/examl-3.0.22/parser' rm -f *.o parse-examl"" make[2]: Leaving directory '/build/examl-3.0.22/parser' make[1]: Leaving directory '/build/examl-3.0.22' dh_autoreconf_clean -O--sourcedirectory=examl dh_clean -O--sourcedirectory=examl debian/rules binary dh binary --sourcedirectory=examl dh_update_autotools_config -O--sourcedirectory=examl dh_autoreconf -O--sourcedirectory=examl dh_auto_configure -O--sourcedirectory=examl debian/rules override_dh_auto_build make[1]: Entering directory '/build/examl-3.0.22' dh_auto_build for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2 ; do \ /usr/bin/make --directory=examl -f Makefile.AVX.gcc SFX=-${SIMD} CFLAGS="-g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -m${SIMD}" ; \ /usr/bin/make --directory=examl -f Makefile.OMP.AVX.gcc SFX=-${SIMD} CFLAGS="-g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -m${SIMD}" ; \ find . -name '*.o' -delete ; \ done make[2]: Entering directory '/build/examl-3.0.22/examl' rm -f *.o examl-avx2 mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c In function ‘initializePartitions’, inlined from ‘initializeTree’ at axml.c:2217:3, inlined from ‘main’ at axml.c:2631:5: axml.c:2121:40: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from axml.c:44: /usr/include/stdlib.h: In function ‘main’: /usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c quartets.c: In function ‘computeQuartets’: quartets.c:393:31: warning: implicit declaration of function ‘basename’; did you mean ‘rename’? [-Wimplicit-function-declaration] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~ | rename quartets.c:393:31: warning: passing argument 2 of ‘strcat’ makes pointer from integer without a cast [-Wint-conversion] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | int In file included from /usr/include/features.h:489, from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/12/include/limits.h:203, from /usr/lib/gcc/x86_64-linux-gnu/12/include/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/12/include/limits.h:34, from quartets.c:36: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:128:1: note: expected ‘const char * restrict’ but argument is of type ‘int’ 128 | __NTH (strcat (char *__restrict __dest, const char *__restrict __src)) | ^~~~~ mpicc -o examl-avx2 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/examl-3.0.22/examl' make[2]: Entering directory '/build/examl-3.0.22/examl' mpicc -o examl-OMP-avx2 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/examl-3.0.22/examl' make[2]: Entering directory '/build/examl-3.0.22/examl' rm -f *.o examl-avx mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c In function ‘initializePartitions’, inlined from ‘initializeTree’ at axml.c:2217:3, inlined from ‘main’ at axml.c:2631:5: axml.c:2121:40: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from axml.c:44: /usr/include/stdlib.h: In function ‘main’: /usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c quartets.c: In function ‘computeQuartets’: quartets.c:393:31: warning: implicit declaration of function ‘basename’; did you mean ‘rename’? [-Wimplicit-function-declaration] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~ | rename quartets.c:393:31: warning: passing argument 2 of ‘strcat’ makes pointer from integer without a cast [-Wint-conversion] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | int In file included from /usr/include/features.h:489, from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/12/include/limits.h:203, from /usr/lib/gcc/x86_64-linux-gnu/12/include/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/12/include/limits.h:34, from quartets.c:36: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:128:1: note: expected ‘const char * restrict’ but argument is of type ‘int’ 128 | __NTH (strcat (char *__restrict __dest, const char *__restrict __src)) | ^~~~~ mpicc -o examl-avx axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/examl-3.0.22/examl' make[2]: Entering directory '/build/examl-3.0.22/examl' mpicc -o examl-OMP-avx axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/examl-3.0.22/examl' make[2]: Entering directory '/build/examl-3.0.22/examl' rm -f *.o examl-sse4.1 mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c In function ‘initializePartitions’, inlined from ‘initializeTree’ at axml.c:2217:3, inlined from ‘main’ at axml.c:2631:5: axml.c:2121:40: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from axml.c:44: /usr/include/stdlib.h: In function ‘main’: /usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c In file included from /usr/include/simde/x86/avx2.h:33, from avxLikelihood.c:14: /usr/include/simde/x86/avx.h: In function ‘simde__m256d_from_private’: /usr/include/simde/x86/avx.h:290:1: note: the ABI for passing parameters with 32-byte alignment has changed in GCC 4.6 290 | simde__m256d_from_private(simde__m256d_private v) { | ^~~~~~~~~~~~~~~~~~~~~~~~~ mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c quartets.c: In function ‘computeQuartets’: quartets.c:393:31: warning: implicit declaration of function ‘basename’; did you mean ‘rename’? [-Wimplicit-function-declaration] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~ | rename quartets.c:393:31: warning: passing argument 2 of ‘strcat’ makes pointer from integer without a cast [-Wint-conversion] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | int In file included from /usr/include/features.h:489, from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/12/include/limits.h:203, from /usr/lib/gcc/x86_64-linux-gnu/12/include/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/12/include/limits.h:34, from quartets.c:36: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:128:1: note: expected ‘const char * restrict’ but argument is of type ‘int’ 128 | __NTH (strcat (char *__restrict __dest, const char *__restrict __src)) | ^~~~~ mpicc -o examl-sse4.1 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/examl-3.0.22/examl' make[2]: Entering directory '/build/examl-3.0.22/examl' mpicc -o examl-OMP-sse4.1 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/examl-3.0.22/examl' make[2]: Entering directory '/build/examl-3.0.22/examl' rm -f *.o examl-ssse3 mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c In function ‘initializePartitions’, inlined from ‘initializeTree’ at axml.c:2217:3, inlined from ‘main’ at axml.c:2631:5: axml.c:2121:40: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from axml.c:44: /usr/include/stdlib.h: In function ‘main’: /usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c In file included from /usr/include/simde/x86/avx2.h:33, from avxLikelihood.c:14: /usr/include/simde/x86/avx.h: In function ‘simde__m256d_from_private’: /usr/include/simde/x86/avx.h:290:1: note: the ABI for passing parameters with 32-byte alignment has changed in GCC 4.6 290 | simde__m256d_from_private(simde__m256d_private v) { | ^~~~~~~~~~~~~~~~~~~~~~~~~ mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c quartets.c: In function ‘computeQuartets’: quartets.c:393:31: warning: implicit declaration of function ‘basename’; did you mean ‘rename’? [-Wimplicit-function-declaration] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~ | rename quartets.c:393:31: warning: passing argument 2 of ‘strcat’ makes pointer from integer without a cast [-Wint-conversion] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | int In file included from /usr/include/features.h:489, from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/12/include/limits.h:203, from /usr/lib/gcc/x86_64-linux-gnu/12/include/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/12/include/limits.h:34, from quartets.c:36: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:128:1: note: expected ‘const char * restrict’ but argument is of type ‘int’ 128 | __NTH (strcat (char *__restrict __dest, const char *__restrict __src)) | ^~~~~ mpicc -o examl-ssse3 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/examl-3.0.22/examl' make[2]: Entering directory '/build/examl-3.0.22/examl' mpicc -o examl-OMP-ssse3 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/examl-3.0.22/examl' make[2]: Entering directory '/build/examl-3.0.22/examl' rm -f *.o examl-sse3 mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c In function ‘initializePartitions’, inlined from ‘initializeTree’ at axml.c:2217:3, inlined from ‘main’ at axml.c:2631:5: axml.c:2121:40: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from axml.c:44: /usr/include/stdlib.h: In function ‘main’: /usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c In file included from /usr/include/simde/x86/avx2.h:33, from avxLikelihood.c:14: /usr/include/simde/x86/avx.h: In function ‘simde__m256d_from_private’: /usr/include/simde/x86/avx.h:290:1: note: the ABI for passing parameters with 32-byte alignment has changed in GCC 4.6 290 | simde__m256d_from_private(simde__m256d_private v) { | ^~~~~~~~~~~~~~~~~~~~~~~~~ mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c quartets.c: In function ‘computeQuartets’: quartets.c:393:31: warning: implicit declaration of function ‘basename’; did you mean ‘rename’? [-Wimplicit-function-declaration] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~ | rename quartets.c:393:31: warning: passing argument 2 of ‘strcat’ makes pointer from integer without a cast [-Wint-conversion] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | int In file included from /usr/include/features.h:489, from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/12/include/limits.h:203, from /usr/lib/gcc/x86_64-linux-gnu/12/include/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/12/include/limits.h:34, from quartets.c:36: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:128:1: note: expected ‘const char * restrict’ but argument is of type ‘int’ 128 | __NTH (strcat (char *__restrict __dest, const char *__restrict __src)) | ^~~~~ mpicc -o examl-sse3 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/examl-3.0.22/examl' make[2]: Entering directory '/build/examl-3.0.22/examl' mpicc -o examl-OMP-sse3 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/examl-3.0.22/examl' make[2]: Entering directory '/build/examl-3.0.22/examl' rm -f *.o examl-sse2 mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c In function ‘initializePartitions’, inlined from ‘initializeTree’ at axml.c:2217:3, inlined from ‘main’ at axml.c:2631:5: axml.c:2121:40: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from axml.c:44: /usr/include/stdlib.h: In function ‘main’: /usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c In file included from /usr/include/simde/x86/avx2.h:33, from avxLikelihood.c:14: /usr/include/simde/x86/avx.h: In function ‘simde__m256d_from_private’: /usr/include/simde/x86/avx.h:290:1: note: the ABI for passing parameters with 32-byte alignment has changed in GCC 4.6 290 | simde__m256d_from_private(simde__m256d_private v) { | ^~~~~~~~~~~~~~~~~~~~~~~~~ mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c quartets.c: In function ‘computeQuartets’: quartets.c:393:31: warning: implicit declaration of function ‘basename’; did you mean ‘rename’? [-Wimplicit-function-declaration] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~ | rename quartets.c:393:31: warning: passing argument 2 of ‘strcat’ makes pointer from integer without a cast [-Wint-conversion] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | int In file included from /usr/include/features.h:489, from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/12/include/limits.h:203, from /usr/lib/gcc/x86_64-linux-gnu/12/include/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/12/include/limits.h:34, from quartets.c:36: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:128:1: note: expected ‘const char * restrict’ but argument is of type ‘int’ 128 | __NTH (strcat (char *__restrict __dest, const char *__restrict __src)) | ^~~~~ mpicc -o examl-sse2 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/examl-3.0.22/examl' make[2]: Entering directory '/build/examl-3.0.22/examl' mpicc -o examl-OMP-sse2 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/examl-3.0.22/examl' /usr/bin/make --directory=parser -f Makefile.SSE3.gcc make[2]: Entering directory '/build/examl-3.0.22/parser' rm -f *.o parse-examl"" gcc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -O2 -D_GNU_SOURCE -funroll-loops -Wall -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value -Wunused-variable -Wformat -Wformat-nonliteral -Wparentheses -Wsequence-point -Wuninitialized -Wundef -Wbad-function-cast -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c axml.c: In function ‘genericBaseFrequencies’: axml.c:2509:26: warning: comparison is always true due to limited range of data type [-Wtype-limits] 2509 | if(yptr[j] >= 0 && yptr[j] < 20) | ^~ gcc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -O2 -D_GNU_SOURCE -funroll-loops -Wall -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value -Wunused-variable -Wformat -Wformat-nonliteral -Wparentheses -Wsequence-point -Wuninitialized -Wundef -Wbad-function-cast -Wdate-time -D_FORTIFY_SOURCE=2 -c -o parsePartitions.o parsePartitions.c gcc -o parse-examl"" axml.o parsePartitions.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/examl-3.0.22/parser' make[1]: Leaving directory '/build/examl-3.0.22' dh_auto_test -O--sourcedirectory=examl create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=examl dh_prep -O--sourcedirectory=examl debian/rules override_dh_auto_install make[1]: Entering directory '/build/examl-3.0.22' dh_install debian/bin/simd-dispatch /usr/lib/examl/bin dh_install examl/examl* /usr/lib/examl/bin/ dh_install parser/parse-examl /usr/bin/ mkdir -p /build/examl-3.0.22/debian/examl/usr/bin cd /build/examl-3.0.22/debian/examl/usr/bin \ && for prog in examl examl-OMP ; do \ ln -s ../lib/examl/bin/simd-dispatch ${prog} ; done make[1]: Leaving directory '/build/examl-3.0.22' dh_installdocs -O--sourcedirectory=examl dh_installchangelogs -O--sourcedirectory=examl dh_installman -O--sourcedirectory=examl dh_installsystemduser -O--sourcedirectory=examl dh_perl -O--sourcedirectory=examl dh_link -O--sourcedirectory=examl dh_strip_nondeterminism -O--sourcedirectory=examl dh_compress -O--sourcedirectory=examl dh_fixperms -O--sourcedirectory=examl dh_missing -O--sourcedirectory=examl dh_dwz -a -O--sourcedirectory=examl dh_strip -a -O--sourcedirectory=examl dh_makeshlibs -a -O--sourcedirectory=examl dh_shlibdeps -a -O--sourcedirectory=examl dh_installdeb -O--sourcedirectory=examl debian/rules override_dh_gencontrol make[1]: Entering directory '/build/examl-3.0.22' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.4~rc2-2), " make[1]: Leaving directory '/build/examl-3.0.22' dh_md5sums -O--sourcedirectory=examl dh_builddeb -O--sourcedirectory=examl dpkg-deb: building package 'examl-dbgsym' in '../examl-dbgsym_3.0.22-3_amd64.deb'. dpkg-deb: building package 'examl' in '../examl_3.0.22-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../examl_3.0.22-3_amd64.buildinfo dpkg-genchanges --build=binary -O../examl_3.0.22-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2712733/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2712733/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2712733 and its subdirectories I: Current time: Tue May 28 02:54:37 +14 2024 I: pbuilder-time-stamp: 1716814477